00:35:01 Started by upstream project "Trigger" build number 440 00:35:01 originally caused by: 00:35:01 Started by timer 00:35:01 Running as SYSTEM 00:35:01 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:35:01 The recommended git tool is: NONE 00:35:01 No credentials specified 00:35:01 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:35:01 Fetching changes from the remote Git repository 00:35:01 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:35:01 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:35:01 > git --version # timeout=10 00:35:01 > git --version # 'git version 2.43.5' 00:35:01 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:35:01 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:35:01 Checking out Revision efb0b4a240f585dba86e8edc84fcbb692a95623e (origin/merge_ci) 00:35:01 > git config core.sparsecheckout # timeout=10 00:35:01 > git checkout -f efb0b4a240f585dba86e8edc84fcbb692a95623e # timeout=10 00:35:01 Commit message: "Add version.properties to etc/omero.properties" 00:35:01 > git rev-list --no-walk 55e5784f22b4b1e3accb40c36c22275224685165 # timeout=10 00:35:01 Cleaning workspace 00:35:01 > git rev-parse --verify HEAD # timeout=10 00:35:01 Resetting working tree 00:35:01 > git reset --hard # timeout=10 00:35:01 > git clean -fdx # timeout=10 00:35:02 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 374 00:35:02 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17373892811652297899.sh 00:35:02 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 00:35:02 + cd src 00:35:02 + export OMERO_BRANCH=merge_ci 00:35:02 + OMERO_BRANCH=merge_ci 00:35:02 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:35:02 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:35:02 + source /home/omero/settings.env 00:35:02 ++ OMERO_DB_HOST=pg 00:35:02 ++ OMERO_DB_USER=postgres 00:35:02 ++ OMERO_DB_PASS= 00:35:02 ++ OMERO_ROOT_PASS=omero 00:35:02 ++ OMERO_DATA_DIR=/OMERO 00:35:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:35:02 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:35:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:35:06 Collecting zeroc-ice==3.6.5 00:35:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:35:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.5 MB/s eta 0:00:00 00:35:09 Installing collected packages: zeroc-ice 00:35:10 Successfully installed zeroc-ice-3.6.5 00:35:10 00:35:10 [notice] A new release of pip available: 22.3.1 -> 25.0.1 00:35:10 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:35:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:35:10 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:35:10 Collecting setuptools<66 00:35:10 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:35:10 Collecting omero-py 00:35:10 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 00:35:10 Collecting urllib3<2 00:35:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:35:10 Collecting appdirs 00:35:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:35:11 Collecting future 00:35:11 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:35:11 Collecting numpy<3 00:35:11 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 00:35:11 Collecting Pillow>=10.0.0 00:35:11 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 00:35:12 Collecting PyYAML 00:35:12 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:35:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:35:12 Collecting requests 00:35:12 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:35:12 Collecting portalocker 00:35:12 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:35:12 Collecting charset-normalizer<4,>=2 00:35:12 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) 00:35:12 Collecting idna<4,>=2.5 00:35:12 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:35:12 Collecting certifi>=2017.4.17 00:35:12 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 00:35:12 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 00:35:12 Attempting uninstall: setuptools 00:35:12 Found existing installation: setuptools 65.5.1 00:35:12 Uninstalling setuptools-65.5.1: 00:35:12 Successfully uninstalled setuptools-65.5.1 00:35:18 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.4 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 00:35:18 00:35:18 [notice] A new release of pip available: 22.3.1 -> 25.0.1 00:35:18 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:35:18 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:35:18 ++ deactivate nondestructive 00:35:18 ++ '[' -n '' ']' 00:35:18 ++ '[' -n '' ']' 00:35:18 ++ hash -r 00:35:18 ++ '[' -n '' ']' 00:35:18 ++ unset VIRTUAL_ENV 00:35:18 ++ unset VIRTUAL_ENV_PROMPT 00:35:18 ++ '[' '!' nondestructive = nondestructive ']' 00:35:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:35:18 ++ export VIRTUAL_ENV 00:35:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:35:18 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:35:18 ++ export PATH 00:35:18 ++ '[' -n '' ']' 00:35:18 ++ '[' -z '' ']' 00:35:18 ++ _OLD_VIRTUAL_PS1= 00:35:18 ++ PS1='(omero-virtualenv) ' 00:35:18 ++ export PS1 00:35:18 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:35:18 ++ export VIRTUAL_ENV_PROMPT 00:35:18 ++ hash -r 00:35:18 + source docs/hudson/OMERO.sh 00:35:18 ++ set -e 00:35:18 ++ set -u 00:35:18 ++ set -x 00:35:18 ++ source docs/hudson/functions.sh 00:35:18 ++ echo Building merge_ci 00:35:18 Building merge_ci 00:35:18 ++ python3 ./build.py build-dev release-all 00:35:18 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:35:18 00:35:18 check-ivy: 00:35:18 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:35:18 Created dir: /home/omero/workspace/OMERO-build/src/target 00:35:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:19 00:35:19 build-scons: 00:35:19 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:35:19 No sub-builds to iterate on 00:35:19 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:35:20 00:35:20 buildlist: 00:35:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:20 00:35:20 clean: 00:35:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:20 00:35:20 python-clean: 00:35:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:35:20 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-efb0b4a240-ice36-b382') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:35:20 warnings.warn( 00:35:20 running clean 00:35:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:35:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:35:20 00:35:20 python-clean: 00:35:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:35:20 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-efb0b4a240-ice36-b382') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:35:20 warnings.warn( 00:35:20 running clean 00:35:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:21 00:35:21 python-clean: 00:35:21 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:35:21 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-efb0b4a240-ice36-b382') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:35:21 warnings.warn( 00:35:21 running clean 00:35:21 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:35:21 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:35:21 00:35:21 build-scons: 00:35:21 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:35:21 00:35:21 build: 00:35:21 No sub-builds to iterate on 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:35:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:21 00:35:21 tools-init: 00:35:21 no-op 00:35:22 00:35:22 retrieve: 00:35:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:22 WARNING: An illegal reflective access operation has occurred 00:35:22 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:35:22 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:35:22 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:35:22 WARNING: All illegal access operations will be denied in a future release 00:35:34 00:35:34 prepare: 00:35:34 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:34 00:35:34 pre-compile: 00:35:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:35 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:35 00:35:35 compile: 00:35:35 no-op 00:35:35 00:35:35 package: 00:35:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:35:35 00:35:35 install: 00:35:35 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-efb0b4a240-ice36-b382 :: integration :: Mon Apr 14 00:35:21 UTC 2025 00:35:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:35:35 :: publishing :: omero#omero_client 00:35:35 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-efb0b4a240-ice36-b382/omero_client-5.6.3-552-efb0b4a240-ice36-b382.jar 00:35:35 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-efb0b4a240-ice36-b382/omero_client-5.6.3-552-efb0b4a240-ice36-b382.xml 00:35:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:36 00:35:36 retrieve: 00:35:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:36 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:35:36 00:35:36 dist: 00:35:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:35:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:35:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:35:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:35:36 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:35:36 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:35:36 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:36 00:35:36 copy-licenses: 00:35:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:36 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:35:36 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:35:36 00:35:36 copy-history: 00:35:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:36 00:35:36 copy-etc: 00:35:36 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:35:36 00:35:36 copy-sql: 00:35:36 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:35:40 00:35:40 copy-server: 00:35:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 00:35:40 00:35:40 copy-client: 00:35:40 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:35:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 00:35:42 00:35:42 update-version: 00:35:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:42 00:35:42 create-workdirs: 00:35:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:35:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:35:42 00:35:42 copy-luts: 00:35:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:42 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:42 00:35:42 test-compile: 00:35:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:42 00:35:42 testng-init: 00:35:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:45 00:35:45,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:35:45 00:35:45,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service. 00:35:45 00:35:45,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:45 00:35:45,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:45 00:35:45,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:35:45 00:35:45,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:35:45 00:35:45,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:35:45 00:35:45,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:45 00:35:45,260 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:45 00:35:45,261 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:35:45 00:35:45,261 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:45 00:35:45,262 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath. 00:35:45 00:35:45,262 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:45 00:35:45,262 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:35:45 00:35:45,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:35:45 00:35:45,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:35:45 00:35:45,479 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:35:45 00:35:45,480 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:35:45 00:35:45,480 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender. 00:35:45 00:35:45,541 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true 00:35:45 00:35:45,541 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:35:45 00:35:45,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:35:45 00:35:45,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:35:45 00:35:45,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:35:45 00:35:45,542 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:35:45 00:35:45,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:35:45 00:35:45,543 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration. 00:35:45 00:35:45,545 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point 00:35:45 00:35:45,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:35:45 00:35:45 lifecycle.test-compile: 00:35:45 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:45 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:45 warning: [options] bootstrap class path not set in conjunction with -source 8 00:35:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:47 import omero.grid.RawAccessRequest; 00:35:47 ^ 00:35:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:47 import omero.grid.RawAccessRequest; 00:35:47 ^ 00:35:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:47 import omero.grid.RawAccessRequest; 00:35:47 ^ 00:35:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:47 import omero.model.ImportJob; 00:35:47 ^ 00:35:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:47 import omero.model.ImportJobI; 00:35:47 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:35:48 IObject link = (IObject) linkClass.newInstance(); 00:35:48 ^ 00:35:48 where T is a type-variable: 00:35:48 T extends Object declared in class Class 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:35:48 T copy = (T) obj.getClass().newInstance(); 00:35:48 ^ 00:35:48 where T is a type-variable: 00:35:48 T extends Object declared in class Class 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:48 RawAccessRequest raw = new RawAccessRequest(); 00:35:48 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:48 RawAccessRequest raw = new RawAccessRequest(); 00:35:48 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:48 raw.repoUuid = legacy.root().getHash().getValue(); 00:35:48 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:48 raw.command = "rm"; 00:35:48 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:48 raw.args = Arrays.asList(path); 00:35:48 ^ 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:35:48 final IObject link = linkClass.newInstance(); 00:35:48 ^ 00:35:48 where T is a type-variable: 00:35:48 T extends Object declared in class Class 00:35:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:35:48 originalLink.setChild(annotationClass.newInstance()); 00:35:48 ^ 00:35:48 where T is a type-variable: 00:35:48 T extends Object declared in class Class 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:49 final RawAccessRequest request = new RawAccessRequest(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:49 final RawAccessRequest request = new RawAccessRequest(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:49 request.repoUuid = repo.root().getHash().getValue(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:49 request.command = "exists"; 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:49 request.args = Collections.singletonList(dirPath); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:49 final RawAccessRequest request = new RawAccessRequest(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:49 final RawAccessRequest request = new RawAccessRequest(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:49 request.repoUuid = repo.root().getHash().getValue(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:49 request.command = "exists"; 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:49 request.args = Collections.singletonList(dirName); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:49 final ImportJob importJob = new ImportJobI(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:49 final ImportJob importJob = new ImportJobI(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:35:49 importJob.setImageName(omero.rtypes.rstring(name)); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:35:49 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:49 final String savedName = sent.getImageName().getValue().toString(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:49 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:49 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:49 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:35:49 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:35:49 table = svc.getTable(f.getId().getValue()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:49 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:49 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:49 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:35:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:49 svc.getShapeStatsRestricted( 00:35:49 ^ 00:35:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:49 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:35:49 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:50 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:50 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:50 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:50 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:50 p2.setRelatedTo(p1); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:50 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:50 pixels1.setRelatedTo(pixels2); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:50 Pixels pixels = pixels1.getRelatedTo(); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:50 Assert.assertNull(pixels1.getRelatedTo()); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:50 pixels1.setRelatedTo(pixels2); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:50 Pixels pixels = pixels1.getRelatedTo(); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:50 Assert.assertNull(pixels1.getRelatedTo()); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:50 ^ 00:35:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:50 ^ 00:35:50 Note: Some input files use unchecked or unsafe operations. 00:35:50 Note: Recompile with -Xlint:unchecked for details. 00:35:50 88 warnings 00:35:50 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_79576157.tmp 00:35:50 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:35:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:50 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-efb0b4a240-ice36-b382 :: integration :: Mon Apr 14 00:35:42 UTC 2025 00:35:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:35:50 :: publishing :: omero#OmeroJava-test 00:35:50 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-efb0b4a240-ice36-b382.jar 00:35:50 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-efb0b4a240-ice36-b382.xml 00:35:50 00:35:50 build-eclipse: 00:35:50 No sub-builds to iterate on 00:35:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:50 00:35:50 retrieve: 00:35:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:53 00:35:53 prepare: 00:35:53 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:35:54 00:35:54 release-clients: 00:35:54 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-efb0b4a240-ice36-b382.zip 00:36:01 00:36:01 release-zip: 00:36:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-efb0b4a240-ice36-b382.zip 00:36:15 00:36:15 BUILD SUCCESSFUL 00:36:15 Total time: 56 seconds 00:36:15 ++ '[' -d .git ']' 00:36:15 ++ python3 ./build.py release-src 00:36:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:36:15 00:36:15 release-src-git: 00:36:15 Releasing openmicroscopy-5.6.3-552-efb0b4a240-ice36-b382 00:36:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-efb0b4a240-ice36-b382.zip 00:36:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-efb0b4a240-ice36-b382-base.zip 00:36:18 00:36:18 BUILD SUCCESSFUL 00:36:18 Total time: 3 seconds 00:36:18 ++ echo BUILD_NUMBER=382 00:36:18 ++ echo OMERO_BRANCH=merge_ci 00:36:18 ++ git_info 00:36:18 +++ git rev-parse HEAD 00:36:18 ++ HEAD=efb0b4a240f585dba86e8edc84fcbb692a95623e 00:36:18 ++ git log --max-count=1 efb0b4a240f585dba86e8edc84fcbb692a95623e 00:36:18 ++ env 00:36:18 ++ sort 00:36:18 Archiving artifacts 00:36:47 Finished: SUCCESS