00:39:05 Started by upstream project "Trigger" build number 445 00:39:05 originally caused by: 00:39:05 Started by timer 00:39:05 Running as SYSTEM 00:39:05 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:39:05 The recommended git tool is: NONE 00:39:05 No credentials specified 00:39:05 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:39:05 Fetching changes from the remote Git repository 00:39:05 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:39:05 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:39:05 > git --version # timeout=10 00:39:05 > git --version # 'git version 2.43.5' 00:39:05 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:39:06 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:39:06 Checking out Revision 1d3965eb9380908e5722e695c10549fa15d9a983 (origin/merge_ci) 00:39:06 > git config core.sparsecheckout # timeout=10 00:39:06 > git checkout -f 1d3965eb9380908e5722e695c10549fa15d9a983 # timeout=10 00:39:06 Commit message: "Add version.properties to etc/omero.properties" 00:39:06 > git rev-list --no-walk 2a90b0d23ff3676b52a193e9a714bbe415d634fe # timeout=10 00:39:06 Cleaning workspace 00:39:06 > git rev-parse --verify HEAD # timeout=10 00:39:06 Resetting working tree 00:39:06 > git reset --hard # timeout=10 00:39:06 > git clean -fdx # timeout=10 00:39:06 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 378 00:39:06 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4005015847957625140.sh 00:39:06 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 00:39:06 + cd src 00:39:06 + export OMERO_BRANCH=merge_ci 00:39:06 + OMERO_BRANCH=merge_ci 00:39:06 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:39:06 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:39:06 + source /home/omero/settings.env 00:39:06 ++ OMERO_DB_HOST=pg 00:39:06 ++ OMERO_DB_USER=postgres 00:39:06 ++ OMERO_DB_PASS= 00:39:06 ++ OMERO_ROOT_PASS=omero 00:39:06 ++ OMERO_DATA_DIR=/OMERO 00:39:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:39:06 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:39:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:39:10 Collecting zeroc-ice==3.6.5 00:39:11 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:39:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00 00:39:13 Installing collected packages: zeroc-ice 00:39:14 Successfully installed zeroc-ice-3.6.5 00:39:14 00:39:14 [notice] A new release of pip available: 22.3.1 -> 25.0.1 00:39:14 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:39:14 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:39:14 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:39:15 Collecting setuptools<66 00:39:15 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:39:15 Collecting omero-py 00:39:15 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 00:39:15 Collecting urllib3<2 00:39:15 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:39:15 Collecting appdirs 00:39:15 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:39:15 Collecting future 00:39:15 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:39:15 Collecting numpy<3 00:39:15 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 00:39:16 Collecting Pillow>=10.0.0 00:39:16 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 00:39:16 Collecting PyYAML 00:39:16 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:39:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:39:16 Collecting requests 00:39:16 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:39:16 Collecting portalocker 00:39:16 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:39:16 Collecting charset-normalizer<4,>=2 00:39:16 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) 00:39:16 Collecting idna<4,>=2.5 00:39:16 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:39:16 Collecting certifi>=2017.4.17 00:39:16 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 00:39:17 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 00:39:17 Attempting uninstall: setuptools 00:39:17 Found existing installation: setuptools 65.5.1 00:39:17 Uninstalling setuptools-65.5.1: 00:39:17 Successfully uninstalled setuptools-65.5.1 00:39:22 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.4 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 00:39:22 00:39:22 [notice] A new release of pip available: 22.3.1 -> 25.0.1 00:39:22 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:39:22 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:39:22 ++ deactivate nondestructive 00:39:22 ++ '[' -n '' ']' 00:39:22 ++ '[' -n '' ']' 00:39:22 ++ hash -r 00:39:22 ++ '[' -n '' ']' 00:39:22 ++ unset VIRTUAL_ENV 00:39:22 ++ unset VIRTUAL_ENV_PROMPT 00:39:22 ++ '[' '!' nondestructive = nondestructive ']' 00:39:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:39:22 ++ export VIRTUAL_ENV 00:39:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:39:22 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:39:22 ++ export PATH 00:39:22 ++ '[' -n '' ']' 00:39:22 ++ '[' -z '' ']' 00:39:22 ++ _OLD_VIRTUAL_PS1= 00:39:22 ++ PS1='(omero-virtualenv) ' 00:39:22 ++ export PS1 00:39:22 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:39:22 ++ export VIRTUAL_ENV_PROMPT 00:39:22 ++ hash -r 00:39:22 + source docs/hudson/OMERO.sh 00:39:22 ++ set -e 00:39:22 ++ set -u 00:39:22 ++ set -x 00:39:22 ++ source docs/hudson/functions.sh 00:39:22 ++ echo Building merge_ci 00:39:22 Building merge_ci 00:39:22 ++ python3 ./build.py build-dev release-all 00:39:23 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:39:23 00:39:23 check-ivy: 00:39:23 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:39:23 Created dir: /home/omero/workspace/OMERO-build/src/target 00:39:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:24 00:39:24 build-scons: 00:39:24 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:39:24 No sub-builds to iterate on 00:39:24 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:39:24 00:39:24 buildlist: 00:39:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:24 00:39:24 clean: 00:39:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:25 00:39:25 python-clean: 00:39:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:25 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-1d3965eb93-ice36-b386') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:25 warnings.warn( 00:39:25 running clean 00:39:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:39:25 00:39:25 python-clean: 00:39:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:25 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-1d3965eb93-ice36-b386') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:25 warnings.warn( 00:39:25 running clean 00:39:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:25 00:39:25 python-clean: 00:39:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:25 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-1d3965eb93-ice36-b386') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:25 warnings.warn( 00:39:25 running clean 00:39:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:39:25 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:39:26 00:39:26 build-scons: 00:39:26 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:39:26 00:39:26 build: 00:39:26 No sub-builds to iterate on 00:39:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:39:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:26 00:39:26 tools-init: 00:39:26 no-op 00:39:26 00:39:26 retrieve: 00:39:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:27 WARNING: An illegal reflective access operation has occurred 00:39:27 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:39:27 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:39:27 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:39:27 WARNING: All illegal access operations will be denied in a future release 00:39:41 00:39:41 prepare: 00:39:41 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:39:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:39:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:39:41 00:39:41 pre-compile: 00:39:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:39:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:39:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:39:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:39:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:39:41 00:39:41 compile: 00:39:41 no-op 00:39:41 00:39:41 package: 00:39:41 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:39:42 00:39:42 install: 00:39:42 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-1d3965eb93-ice36-b386 :: integration :: Sat Apr 19 00:39:26 UTC 2025 00:39:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:39:42 :: publishing :: omero#omero_client 00:39:42 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-1d3965eb93-ice36-b386/omero_client-5.6.3-552-1d3965eb93-ice36-b386.jar 00:39:42 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-1d3965eb93-ice36-b386/omero_client-5.6.3-552-1d3965eb93-ice36-b386.xml 00:39:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:42 00:39:42 retrieve: 00:39:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:43 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:39:43 00:39:43 dist: 00:39:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:39:43 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:39:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:39:43 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:39:43 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:39:43 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:39:43 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:39:43 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:39:43 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:39:43 00:39:43 copy-licenses: 00:39:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:39:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:39:43 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:39:43 00:39:43 copy-history: 00:39:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:39:43 00:39:43 copy-etc: 00:39:43 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:39:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:39:43 00:39:43 copy-sql: 00:39:43 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:39:48 00:39:48 copy-server: 00:39:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 00:39:48 00:39:48 copy-client: 00:39:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:39:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 00:39:50 00:39:50 update-version: 00:39:50 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:39:50 00:39:50 create-workdirs: 00:39:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:39:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:39:50 00:39:50 copy-luts: 00:39:50 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:39:50 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:39:50 00:39:50 test-compile: 00:39:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:39:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:50 00:39:50 testng-init: 00:39:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:53 00:39:53,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:39:53 00:39:53,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service. 00:39:53 00:39:53,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:39:53 00:39:53,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:39:53 00:39:53,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:39:53 00:39:53,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:39:53 00:39:53,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:39:53 00:39:53,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:39:53 00:39:53,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:39:53 00:39:53,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:39:53 00:39:53,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:39:53 00:39:53,478 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath. 00:39:53 00:39:53,478 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:39:53 00:39:53,478 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:39:53 00:39:53,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:39:53 00:39:53,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:39:53 00:39:53,701 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:39:53 00:39:53,703 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:39:53 00:39:53,703 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender. 00:39:53 00:39:53,765 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:39:53 00:39:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:39:53 00:39:53,767 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration. 00:39:53 00:39:53,770 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point 00:39:53 00:39:53,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:39:53 00:39:53 lifecycle.test-compile: 00:39:53 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:39:53 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:39:54 warning: [options] bootstrap class path not set in conjunction with -source 8 00:39:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:55 import omero.grid.RawAccessRequest; 00:39:55 ^ 00:39:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:55 import omero.grid.RawAccessRequest; 00:39:55 ^ 00:39:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:55 import omero.grid.RawAccessRequest; 00:39:55 ^ 00:39:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:55 import omero.model.ImportJob; 00:39:55 ^ 00:39:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:39:55 import omero.model.ImportJobI; 00:39:55 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:39:56 IObject link = (IObject) linkClass.newInstance(); 00:39:56 ^ 00:39:56 where T is a type-variable: 00:39:56 T extends Object declared in class Class 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:39:56 T copy = (T) obj.getClass().newInstance(); 00:39:56 ^ 00:39:56 where T is a type-variable: 00:39:56 T extends Object declared in class Class 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:56 RawAccessRequest raw = new RawAccessRequest(); 00:39:56 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:56 RawAccessRequest raw = new RawAccessRequest(); 00:39:56 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:39:56 raw.repoUuid = legacy.root().getHash().getValue(); 00:39:56 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:39:56 raw.command = "rm"; 00:39:56 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:39:56 raw.args = Arrays.asList(path); 00:39:56 ^ 00:39:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:39:56 final IObject link = linkClass.newInstance(); 00:39:56 ^ 00:39:56 where T is a type-variable: 00:39:56 T extends Object declared in class Class 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:39:57 originalLink.setChild(annotationClass.newInstance()); 00:39:57 ^ 00:39:57 where T is a type-variable: 00:39:57 T extends Object declared in class Class 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:39:57 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:57 final RawAccessRequest request = new RawAccessRequest(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:57 final RawAccessRequest request = new RawAccessRequest(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:39:57 request.repoUuid = repo.root().getHash().getValue(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:39:57 request.command = "exists"; 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:39:57 request.args = Collections.singletonList(dirPath); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:57 final RawAccessRequest request = new RawAccessRequest(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:39:57 final RawAccessRequest request = new RawAccessRequest(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:39:57 request.repoUuid = repo.root().getHash().getValue(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:39:57 request.command = "exists"; 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:39:57 request.args = Collections.singletonList(dirName); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:57 final ImportJob importJob = new ImportJobI(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:39:57 final ImportJob importJob = new ImportJobI(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:39:57 importJob.setImageName(omero.rtypes.rstring(name)); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:39:57 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:39:57 final String savedName = sent.getImageName().getValue().toString(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:39:57 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:39:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:39:57 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:39:57 ^ 00:39:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:39:57 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:39:57 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 RoiResult r = svc.findByImage(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:39:58 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:39:58 table = svc.getTable(f.getId().getValue()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 RoiResult r = svc.findByImage(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:39:58 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:39:58 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:39:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:39:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:39:58 svc.getShapeStatsRestricted( 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:39:58 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:39:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:39:58 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:39:58 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:39:58 request.typesToIgnore = Collections.singletonList("Annotation"); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:39:58 request.typesToIgnore = Collections.singletonList("Annotation"); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:39:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:39:58 p2.setRelatedTo(p1); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:39:58 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:39:58 pixels1.setRelatedTo(pixels2); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:39:58 Pixels pixels = pixels1.getRelatedTo(); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:39:58 Assert.assertNull(pixels1.getRelatedTo()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:39:58 pixels1.setRelatedTo(pixels2); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:39:58 Pixels pixels = pixels1.getRelatedTo(); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:39:58 Assert.assertNull(pixels1.getRelatedTo()); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:39:58 ^ 00:39:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:39:58 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:39:58 ^ 00:39:58 Note: Some input files use unchecked or unsafe operations. 00:39:58 Note: Recompile with -Xlint:unchecked for details. 00:39:58 88 warnings 00:39:58 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1235443251.tmp 00:39:58 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:39:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:58 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-1d3965eb93-ice36-b386 :: integration :: Sat Apr 19 00:39:50 UTC 2025 00:39:58 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:39:58 :: publishing :: omero#OmeroJava-test 00:39:58 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-1d3965eb93-ice36-b386.jar 00:39:58 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-1d3965eb93-ice36-b386.xml 00:39:58 00:39:58 build-eclipse: 00:39:58 No sub-builds to iterate on 00:39:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:59 00:39:59 retrieve: 00:39:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:01 00:40:01 prepare: 00:40:01 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:40:02 00:40:02 release-clients: 00:40:02 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-1d3965eb93-ice36-b386.zip 00:40:09 00:40:09 release-zip: 00:40:09 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-1d3965eb93-ice36-b386.zip 00:40:22 00:40:22 BUILD SUCCESSFUL 00:40:22 Total time: 59 seconds 00:40:22 ++ '[' -d .git ']' 00:40:22 ++ python3 ./build.py release-src 00:40:22 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:40:23 00:40:23 release-src-git: 00:40:23 Releasing openmicroscopy-5.6.3-552-1d3965eb93-ice36-b386 00:40:24 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-1d3965eb93-ice36-b386.zip 00:40:24 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-1d3965eb93-ice36-b386-base.zip 00:40:26 00:40:26 BUILD SUCCESSFUL 00:40:26 Total time: 3 seconds 00:40:26 ++ echo BUILD_NUMBER=386 00:40:26 ++ echo OMERO_BRANCH=merge_ci 00:40:26 ++ git_info 00:40:26 +++ git rev-parse HEAD 00:40:26 ++ HEAD=1d3965eb9380908e5722e695c10549fa15d9a983 00:40:26 ++ git log --max-count=1 1d3965eb9380908e5722e695c10549fa15d9a983 00:40:26 ++ env 00:40:26 ++ sort 00:40:26 Archiving artifacts 00:40:55 Finished: SUCCESS