05:27:43 Started by upstream project "Trigger" build number 49 05:27:43 originally caused by: 05:27:43 Started by user devspace 05:27:43 Running as SYSTEM 05:27:43 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 05:27:43 The recommended git tool is: NONE 05:27:43 No credentials specified 05:27:43 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 05:27:43 Fetching changes from the remote Git repository 05:27:43 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 05:27:43 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 05:27:43 > git --version # timeout=10 05:27:43 > git --version # 'git version 2.39.3' 05:27:43 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 05:27:47 > git rev-parse origin/merge_ci^{commit} # timeout=10 05:27:47 Checking out Revision f824c5f0bbf360874ec0c42b3de4796821433358 (origin/merge_ci) 05:27:47 > git config core.sparsecheckout # timeout=10 05:27:47 > git checkout -f f824c5f0bbf360874ec0c42b3de4796821433358 # timeout=10 05:27:47 Commit message: "Add version.properties to etc/omero.properties" 05:27:47 > git rev-list --no-walk b35a114fd003b9ea69c5961dc4df3704c222fed1 # timeout=10 05:27:47 Cleaning workspace 05:27:47 > git rev-parse --verify HEAD # timeout=10 05:27:47 Resetting working tree 05:27:47 > git reset --hard # timeout=10 05:27:47 > git clean -fdx # timeout=10 05:27:49 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 40 05:27:49 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13320270925488858489.sh 05:27:49 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 05:27:49 + cd src 05:27:49 + export OMERO_BRANCH=merge_ci 05:27:49 + OMERO_BRANCH=merge_ci 05:27:49 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 05:27:49 + source /home/omero/settings.env 05:27:49 ++ OMERO_DB_HOST=pg 05:27:49 ++ OMERO_DB_USER=postgres 05:27:49 ++ OMERO_DB_PASS= 05:27:49 ++ OMERO_ROOT_PASS=omero 05:27:49 ++ OMERO_DATA_DIR=/OMERO 05:27:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 05:27:49 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 05:27:53 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 05:27:54 Collecting zeroc-ice==3.6.5 05:27:55 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 05:27:56 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 05:27:56 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 05:27:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 05:27:57 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1) 05:27:58 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1) 05:27:58 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 05:27:58 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 05:27:58 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 05:27:58 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 05:27:58 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 05:27:58 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 05:27:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 05:27:58 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 05:27:58 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 05:27:58 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 05:27:58 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 05:27:58 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 05:27:58 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 05:27:58 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 05:27:58 + source docs/hudson/OMERO.sh 05:27:58 ++ set -e 05:27:58 ++ set -u 05:27:58 ++ set -x 05:27:58 ++ source docs/hudson/functions.sh 05:27:58 ++ echo Building merge_ci 05:27:58 Building merge_ci 05:27:58 ++ python3 ./build.py build-dev release-all 05:27:59 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 05:27:59 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 05:28:00 05:28:00 check-ivy: 05:28:00 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 05:28:00 Created dir: /home/omero/workspace/OMERO-build/src/target 05:28:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:28:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:28:02 05:28:02 build-scons: 05:28:02 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 05:28:02 No sub-builds to iterate on 05:28:02 Entering /home/omero/workspace/OMERO-build/src/components/tools... 05:28:03 05:28:03 buildlist: 05:28:03 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:28:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:28:03 05:28:03 clean: 05:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:28:03 05:28:03 python-clean: 05:28:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 05:28:03 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-456-f824c5f0bb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 05:28:03 warnings.warn( 05:28:03 running clean 05:28:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 05:28:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 05:28:04 05:28:04 python-clean: 05:28:04 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 05:28:04 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-456-f824c5f0bb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 05:28:04 warnings.warn( 05:28:04 running clean 05:28:04 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:28:04 05:28:04 python-clean: 05:28:04 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 05:28:04 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-456-f824c5f0bb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 05:28:04 warnings.warn( 05:28:04 running clean 05:28:04 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 05:28:04 Deleting directory /home/omero/workspace/OMERO-build/src/target 05:28:04 05:28:04 build-scons: 05:28:04 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 05:28:04 05:28:04 build: 05:28:04 No sub-builds to iterate on 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 05:28:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 05:28:04 05:28:04 tools-init: 05:28:04 no-op 05:28:05 05:28:05 retrieve: 05:28:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:28:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:28:05 WARNING: An illegal reflective access operation has occurred 05:28:05 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 05:28:05 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 05:28:05 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 05:28:05 WARNING: All illegal access operations will be denied in a future release 05:29:10 05:29:10 prepare: 05:29:10 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 05:29:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 05:29:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 05:29:10 05:29:10 pre-compile: 05:29:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 05:29:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 05:29:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 05:29:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 05:29:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 05:29:10 05:29:10 compile: 05:29:10 no-op 05:29:11 05:29:11 package: 05:29:11 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 05:29:11 05:29:11 install: 05:29:11 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-456-f824c5f0bb-ice36 :: integration :: Tue Apr 23 05:28:04 UTC 2024 05:29:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 05:29:11 :: publishing :: omero#omero_client 05:29:11 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-456-f824c5f0bb-ice36/omero_client-5.6.3-456-f824c5f0bb-ice36.jar 05:29:11 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-456-f824c5f0bb-ice36/omero_client-5.6.3-456-f824c5f0bb-ice36.xml 05:29:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:29:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:29:11 05:29:11 retrieve: 05:29:11 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:29:11 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:29:12 Entering /home/omero/workspace/OMERO-build/src/components/tools... 05:29:12 05:29:12 dist: 05:29:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 05:29:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 05:29:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 05:29:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 05:29:12 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 05:29:12 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 05:29:12 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 05:29:12 Entering /home/omero/workspace/OMERO-build/src/components/tests... 05:29:12 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 05:29:12 05:29:12 copy-licenses: 05:29:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 05:29:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 05:29:12 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 05:29:13 05:29:13 copy-history: 05:29:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 05:29:13 05:29:13 copy-etc: 05:29:13 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 05:29:13 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 05:29:13 05:29:13 copy-sql: 05:29:13 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 05:29:27 05:29:27 copy-server: 05:29:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 05:29:27 05:29:27 copy-client: 05:29:27 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 05:29:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 05:29:29 05:29:29 update-version: 05:29:29 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 05:29:29 05:29:29 create-workdirs: 05:29:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 05:29:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 05:29:29 05:29:29 copy-luts: 05:29:29 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 05:29:29 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 05:29:29 05:29:29 test-compile: 05:29:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 05:29:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 05:29:30 05:29:30 testng-init: 05:29:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:29:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:29:35 05:29:34,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 05:29:35 05:29:34,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - No custom configurators were discovered as a service. 05:29:35 05:29:34,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 05:29:35 05:29:34,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 05:29:35 05:29:34,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 05:29:35 05:29:34,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 05:29:35 05:29:34,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 05:29:35 05:29:34,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 05:29:35 05:29:34,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 05:29:35 05:29:34,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 05:29:35 05:29:34,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 05:29:35 05:29:34,967 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs multiple times on the classpath. 05:29:35 05:29:34,967 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 05:29:35 05:29:34,967 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@664bd35e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 05:29:35 05:29:35,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 05:29:35 05:29:35,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 05:29:35 05:29:35,279 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 05:29:35 05:29:35,282 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 05:29:35 05:29:35,282 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Please move "immediateFlush" property into the enclosing appender. 05:29:35 05:29:35,358 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33ce766b - Setting the "immediateFlush" property of the enclosing appender to true 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 05:29:35 05:29:35,360 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 05:29:35 05:29:35,361 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5bd8b901 - End of configuration. 05:29:35 05:29:35,363 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5390bdee - Registering current configuration as safe fallback point 05:29:35 05:29:35,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7cfe97db - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 398 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 05:29:35 05:29:35 lifecycle.test-compile: 05:29:35 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 05:29:35 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 05:29:36 warning: [options] bootstrap class path not set in conjunction with -source 8 05:29:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:38 import omero.grid.RawAccessRequest; 05:29:38 ^ 05:29:38 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:38 import omero.grid.RawAccessRequest; 05:29:38 ^ 05:29:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:39 import omero.grid.RawAccessRequest; 05:29:39 ^ 05:29:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:39 import omero.model.ImportJob; 05:29:39 ^ 05:29:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 05:29:39 import omero.model.ImportJobI; 05:29:39 ^ 05:29:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 05:29:39 IObject link = (IObject) linkClass.newInstance(); 05:29:39 ^ 05:29:39 where T is a type-variable: 05:29:39 T extends Object declared in class Class 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 05:29:40 T copy = (T) obj.getClass().newInstance(); 05:29:40 ^ 05:29:40 where T is a type-variable: 05:29:40 T extends Object declared in class Class 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:40 RawAccessRequest raw = new RawAccessRequest(); 05:29:40 ^ 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:40 RawAccessRequest raw = new RawAccessRequest(); 05:29:40 ^ 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 05:29:40 raw.repoUuid = legacy.root().getHash().getValue(); 05:29:40 ^ 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 05:29:40 raw.command = "rm"; 05:29:40 ^ 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 05:29:40 raw.args = Arrays.asList(path); 05:29:40 ^ 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 05:29:40 final IObject link = linkClass.newInstance(); 05:29:40 ^ 05:29:40 where T is a type-variable: 05:29:40 T extends Object declared in class Class 05:29:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 05:29:40 originalLink.setChild(annotationClass.newInstance()); 05:29:40 ^ 05:29:40 where T is a type-variable: 05:29:40 T extends Object declared in class Class 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 05:29:41 RoiResult r = svc.findByImage(id, new RoiOptions()); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:41 final RawAccessRequest request = new RawAccessRequest(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:41 final RawAccessRequest request = new RawAccessRequest(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 05:29:41 request.repoUuid = repo.root().getHash().getValue(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 05:29:41 request.command = "exists"; 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 05:29:41 request.args = Collections.singletonList(dirPath); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:41 final RawAccessRequest request = new RawAccessRequest(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 05:29:41 final RawAccessRequest request = new RawAccessRequest(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 05:29:41 request.repoUuid = repo.root().getHash().getValue(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 05:29:41 request.command = "exists"; 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 05:29:41 request.args = Collections.singletonList(dirName); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:41 final ImportJob importJob = new ImportJobI(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 05:29:41 final ImportJob importJob = new ImportJobI(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 05:29:41 importJob.setImageName(omero.rtypes.rstring(name)); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 05:29:41 importJob.setImageDescription(omero.rtypes.rstring(desc)); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:41 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:41 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 05:29:41 final String savedName = sent.getImageName().getValue().toString(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 05:29:41 final String savedDesc = sent.getImageDescription().getValue().toString(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:41 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 05:29:41 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 05:29:41 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 05:29:41 ^ 05:29:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 05:29:41 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 05:29:41 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 RoiResult r = svc.findByImage(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 l = svc.getRoiMeasurements(image.getId().getValue(), options); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 l = svc.getRoiMeasurements(image.getId().getValue(), options); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 05:29:42 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 05:29:42 table = svc.getTable(f.getId().getValue()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 RoiResult r = svc.findByImage(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 05:29:42 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 05:29:42 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 05:29:42 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 05:29:42 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 05:29:42 svc.getShapeStatsRestricted( 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 05:29:42 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 05:29:42 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 05:29:42 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 05:29:42 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 05:29:42 request.typesToIgnore = Collections.singletonList("Annotation"); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 05:29:42 request.typesToIgnore = Collections.singletonList("Annotation"); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 05:29:42 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 05:29:42 p2.setRelatedTo(p1); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 05:29:42 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 05:29:42 pixels1.setRelatedTo(pixels2); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 05:29:42 Pixels pixels = pixels1.getRelatedTo(); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 05:29:42 Assert.assertNull(pixels1.getRelatedTo()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 05:29:42 pixels1.setRelatedTo(pixels2); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 05:29:42 Pixels pixels = pixels1.getRelatedTo(); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 05:29:42 Assert.assertNull(pixels1.getRelatedTo()); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 l = svc.getRoiMeasurements(image.getId().getValue(), options); 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 05:29:42 ^ 05:29:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 05:29:42 l = svc.getRoiMeasurements(image.getId().getValue(), options); 05:29:42 ^ 05:29:42 Note: Some input files use unchecked or unsafe operations. 05:29:42 Note: Recompile with -Xlint:unchecked for details. 05:29:42 88 warnings 05:29:42 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1467770125.tmp 05:29:42 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 05:29:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:29:42 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-456-f824c5f0bb-ice36 :: integration :: Tue Apr 23 05:29:30 UTC 2024 05:29:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 05:29:42 :: publishing :: omero#OmeroJava-test 05:29:42 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-456-f824c5f0bb-ice36.jar 05:29:42 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-456-f824c5f0bb-ice36.xml 05:29:42 05:29:42 build-eclipse: 05:29:42 No sub-builds to iterate on 05:29:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 05:29:43 05:29:43 retrieve: 05:29:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 05:29:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 05:29:45 05:29:45 prepare: 05:29:45 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 05:29:46 05:29:46 release-clients: 05:29:46 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-456-f824c5f0bb-ice36.zip 05:29:53 05:29:53 release-zip: 05:29:53 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip 05:30:05 05:30:05 BUILD SUCCESSFUL 05:30:05 Total time: 2 minutes 5 seconds 05:30:05 ++ '[' -d .git ']' 05:30:05 ++ python3 ./build.py release-src 05:30:05 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 05:30:05 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 05:30:06 05:30:06 release-src-git: 05:30:06 Releasing openmicroscopy-5.6.3-456-f824c5f0bb-ice36 05:30:08 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-456-f824c5f0bb-ice36.zip 05:30:08 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-456-f824c5f0bb-ice36-base.zip 05:30:10 05:30:10 BUILD SUCCESSFUL 05:30:10 Total time: 4 seconds 05:30:10 ++ echo BUILD_NUMBER=40 05:30:10 ++ echo OMERO_BRANCH=merge_ci 05:30:10 ++ git_info 05:30:10 +++ git rev-parse HEAD 05:30:10 ++ HEAD=f824c5f0bbf360874ec0c42b3de4796821433358 05:30:10 ++ git log --max-count=1 f824c5f0bbf360874ec0c42b3de4796821433358 05:30:10 ++ env 05:30:10 ++ sort 05:30:10 Archiving artifacts 05:30:39 Finished: SUCCESS