00:34:38 Started by upstream project "Trigger" build number 70 00:34:38 originally caused by: 00:34:38 Started by timer 00:34:38 Running as SYSTEM 00:34:38 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:34:38 The recommended git tool is: NONE 00:34:38 No credentials specified 00:34:38 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:34:38 Fetching changes from the remote Git repository 00:34:38 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:34:38 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:34:38 > git --version # timeout=10 00:34:38 > git --version # 'git version 2.47.3' 00:34:38 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:34:38 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:34:38 Checking out Revision 15588f48ac1217787ce41f66056ee7ee58e84196 (origin/merge_ci) 00:34:38 > git config core.sparsecheckout # timeout=10 00:34:38 > git checkout -f 15588f48ac1217787ce41f66056ee7ee58e84196 # timeout=10 00:34:38 Commit message: "Add version.properties to etc/omero.properties" 00:34:38 > git rev-list --no-walk a8dcaa050b18d4d02b848d90cc3c5ae0b388accc # timeout=10 00:34:38 Cleaning workspace 00:34:38 > git rev-parse --verify HEAD # timeout=10 00:34:38 Resetting working tree 00:34:38 > git reset --hard # timeout=10 00:34:38 > git clean -fdx # timeout=10 00:34:38 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43 00:34:38 [OMERO-build] $ /bin/bash -xe /tmp/jenkins8865877469432631046.sh 00:34:38 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 00:34:38 + cd src 00:34:38 + export OMERO_BRANCH=merge_ci 00:34:38 + OMERO_BRANCH=merge_ci 00:34:38 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:34:38 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:34:39 + source /home/omero/settings.env 00:34:39 ++ OMERO_DB_HOST=pg 00:34:39 ++ OMERO_DB_USER=postgres 00:34:39 ++ OMERO_DB_PASS= 00:34:39 ++ OMERO_ROOT_PASS=omero 00:34:39 ++ OMERO_DATA_DIR=/OMERO 00:34:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:34:39 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:34:42 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:34:42 Collecting zeroc-ice==3.6.5 00:34:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:34:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.5 MB/s eta 0:00:00 00:34:45 Installing collected packages: zeroc-ice 00:34:46 Successfully installed zeroc-ice-3.6.5 00:34:46 00:34:46 [notice] A new release of pip available: 22.3.1 -> 26.0 00:34:46 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:34:46 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:34:47 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:34:47 Collecting setuptools<66 00:34:47 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:34:47 Collecting omero-py 00:34:47 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 00:34:47 Collecting appdirs 00:34:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:34:47 Collecting future 00:34:47 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:34:48 Collecting numpy<3 00:34:48 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:34:48 Collecting Pillow>=10.0.0 00:34:48 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:34:48 Collecting PyYAML 00:34:48 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:34:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:34:49 Collecting requests 00:34:49 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:34:49 Collecting portalocker 00:34:49 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:34:49 Collecting charset_normalizer<4,>=2 00:34:49 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:34:49 Collecting idna<4,>=2.5 00:34:49 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:34:49 Collecting urllib3<3,>=1.21.1 00:34:49 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 00:34:49 Collecting certifi>=2017.4.17 00:34:49 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 00:34:49 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:34:49 Attempting uninstall: setuptools 00:34:49 Found existing installation: setuptools 65.5.1 00:34:49 Uninstalling setuptools-65.5.1: 00:34:49 Successfully uninstalled setuptools-65.5.1 00:34:56 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.2 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3 00:34:56 00:34:56 [notice] A new release of pip available: 22.3.1 -> 26.0 00:34:56 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:34:56 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:34:56 ++ deactivate nondestructive 00:34:56 ++ '[' -n '' ']' 00:34:56 ++ '[' -n '' ']' 00:34:56 ++ hash -r 00:34:56 ++ '[' -n '' ']' 00:34:56 ++ unset VIRTUAL_ENV 00:34:56 ++ unset VIRTUAL_ENV_PROMPT 00:34:56 ++ '[' '!' nondestructive = nondestructive ']' 00:34:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:34:56 ++ export VIRTUAL_ENV 00:34:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:56 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:56 ++ export PATH 00:34:56 ++ '[' -n '' ']' 00:34:56 ++ '[' -z '' ']' 00:34:56 ++ _OLD_VIRTUAL_PS1= 00:34:56 ++ PS1='(omero-virtualenv) ' 00:34:56 ++ export PS1 00:34:56 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:34:56 ++ export VIRTUAL_ENV_PROMPT 00:34:56 ++ hash -r 00:34:56 + source docs/hudson/OMERO.sh 00:34:56 ++ set -e 00:34:56 ++ set -u 00:34:56 ++ set -x 00:34:56 ++ source docs/hudson/functions.sh 00:34:56 ++ echo Building merge_ci 00:34:56 Building merge_ci 00:34:56 ++ python3 ./build.py build-dev release-all 00:34:56 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:34:57 00:34:57 check-ivy: 00:34:57 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:34:57 Created dir: /home/omero/workspace/OMERO-build/src/target 00:34:57 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:34:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:34:57 00:34:57 build-scons: 00:34:57 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:34:57 No sub-builds to iterate on 00:34:58 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:34:58 00:34:58 buildlist: 00:34:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:34:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:34:58 00:34:58 clean: 00:34:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:58 00:34:58 python-clean: 00:34:58 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:58 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-15588f48ac-ice36-b47') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:58 warnings.warn( 00:34:58 running clean 00:34:58 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:34:58 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:34:59 00:34:59 python-clean: 00:34:59 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:59 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-15588f48ac-ice36-b47') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:59 warnings.warn( 00:34:59 running clean 00:34:59 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:34:59 00:34:59 python-clean: 00:34:59 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:59 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-15588f48ac-ice36-b47') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:59 warnings.warn( 00:34:59 running clean 00:34:59 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:34:59 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:34:59 00:34:59 build-scons: 00:34:59 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:34:59 00:34:59 build: 00:34:59 No sub-builds to iterate on 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:34:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:34:59 00:34:59 tools-init: 00:34:59 no-op 00:35:00 00:35:00 retrieve: 00:35:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:41 00:35:41 prepare: 00:35:41 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:41 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:41 00:35:41 pre-compile: 00:35:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:41 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:41 00:35:41 compile: 00:35:41 no-op 00:35:41 00:35:41 package: 00:35:41 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:35:42 00:35:42 install: 00:35:42 :: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-593-15588f48ac-ice36-b47 :: integration :: Sun Feb 08 00:34:59 UTC 2026 00:35:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:35:42 :: publishing :: omero#omero_client 00:35:42 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-593-15588f48ac-ice36-b47/omero_client-5.6.3-593-15588f48ac-ice36-b47.jar 00:35:42 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-593-15588f48ac-ice36-b47/omero_client-5.6.3-593-15588f48ac-ice36-b47.xml 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:42 00:35:42 retrieve: 00:35:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:42 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:35:42 00:35:42 dist: 00:35:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:35:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:35:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:42 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:42 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:35:42 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:35:42 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:35:43 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:35:43 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:43 00:35:43 copy-licenses: 00:35:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:35:43 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:35:43 00:35:43 copy-history: 00:35:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:43 00:35:43 copy-etc: 00:35:43 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:35:43 00:35:43 copy-sql: 00:35:43 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:35:48 00:35:48 copy-server: 00:35:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:35:48 00:35:48 copy-client: 00:35:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:35:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:35:49 00:35:49 update-version: 00:35:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:49 00:35:49 create-workdirs: 00:35:49 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:35:49 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:35:49 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 00:35:49 00:35:49 copy-luts: 00:35:49 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:49 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:49 00:35:49 test-compile: 00:35:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:35:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:50 00:35:50 testng-init: 00:35:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:52 00:35:52,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 00:35:52 00:35:52,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - No custom configurators were discovered as a service. 00:35:52 00:35:52,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:52 00:35:52,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:52 00:35:52,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:35:52 00:35:52,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:35:52 00:35:52,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:35:52 00:35:52,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:52 00:35:52,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:52 00:35:52,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:35:52 00:35:52,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:52 00:35:52,672 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75d12 - Resource [logback.xml] occurs multiple times on the classpath. 00:35:52 00:35:52,672 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75d12 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:52 00:35:52,672 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75d12 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:35:52 00:35:52,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:35:52 00:35:52,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:35:52 00:35:52,894 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:35:52 00:35:52,896 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30082a5e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:35:52 00:35:52,896 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30082a5e - Please move "immediateFlush" property into the enclosing appender. 00:35:52 00:35:52,952 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@30082a5e - Setting the "immediateFlush" property of the enclosing appender to true 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:35:52 00:35:52,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:35:52 00:35:52,954 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2012ed86 - End of configuration. 00:35:52 00:35:52,956 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5c512d91 - Registering current configuration as safe fallback point 00:35:52 00:35:52,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@58649b7e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:35:52 00:35:52 lifecycle.test-compile: 00:35:52 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:52 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:53 warning: [options] bootstrap class path not set in conjunction with -source 8 00:35:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:54 import omero.grid.RawAccessRequest; 00:35:54 ^ 00:35:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:54 import omero.grid.RawAccessRequest; 00:35:54 ^ 00:35:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:54 import omero.grid.RawAccessRequest; 00:35:54 ^ 00:35:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:54 import omero.model.ImportJob; 00:35:54 ^ 00:35:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:54 import omero.model.ImportJobI; 00:35:54 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:35:55 IObject link = (IObject) linkClass.newInstance(); 00:35:55 ^ 00:35:55 where T is a type-variable: 00:35:55 T extends Object declared in class Class 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:35:55 T copy = (T) obj.getClass().newInstance(); 00:35:55 ^ 00:35:55 where T is a type-variable: 00:35:55 T extends Object declared in class Class 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:55 RawAccessRequest raw = new RawAccessRequest(); 00:35:55 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:55 RawAccessRequest raw = new RawAccessRequest(); 00:35:55 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:55 raw.repoUuid = legacy.root().getHash().getValue(); 00:35:55 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:55 raw.command = "rm"; 00:35:55 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:55 raw.args = Arrays.asList(path); 00:35:55 ^ 00:35:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:35:55 final IObject link = linkClass.newInstance(); 00:35:55 ^ 00:35:55 where T is a type-variable: 00:35:55 T extends Object declared in class Class 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:35:56 originalLink.setChild(annotationClass.newInstance()); 00:35:56 ^ 00:35:56 where T is a type-variable: 00:35:56 T extends Object declared in class Class 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:56 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:56 final RawAccessRequest request = new RawAccessRequest(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:56 final RawAccessRequest request = new RawAccessRequest(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:56 request.repoUuid = repo.root().getHash().getValue(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:56 request.command = "exists"; 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:56 request.args = Collections.singletonList(dirPath); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:56 final RawAccessRequest request = new RawAccessRequest(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:56 final RawAccessRequest request = new RawAccessRequest(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:56 request.repoUuid = repo.root().getHash().getValue(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:56 request.command = "exists"; 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:56 request.args = Collections.singletonList(dirName); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:56 final ImportJob importJob = new ImportJobI(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:56 final ImportJob importJob = new ImportJobI(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:35:56 importJob.setImageName(omero.rtypes.rstring(name)); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:35:56 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:56 final String savedName = sent.getImageName().getValue().toString(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:56 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:35:56 ^ 00:35:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:35:56 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:35:57 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:35:57 table = svc.getTable(f.getId().getValue()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:57 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:57 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 00:35:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:35:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:57 svc.getShapeStatsRestricted( 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:57 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:57 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:57 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:57 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:57 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:57 p2.setRelatedTo(p1); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:57 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:57 pixels1.setRelatedTo(pixels2); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:57 Pixels pixels = pixels1.getRelatedTo(); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:57 Assert.assertNull(pixels1.getRelatedTo()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:57 pixels1.setRelatedTo(pixels2); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:57 Pixels pixels = pixels1.getRelatedTo(); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:57 Assert.assertNull(pixels1.getRelatedTo()); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:57 ^ 00:35:57 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:57 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:57 ^ 00:35:57 Note: Some input files use unchecked or unsafe operations. 00:35:57 Note: Recompile with -Xlint:unchecked for details. 00:35:57 88 warnings 00:35:57 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1779669398.tmp 00:35:57 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:35:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:57 :: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-593-15588f48ac-ice36-b47 :: integration :: Sun Feb 08 00:35:50 UTC 2026 00:35:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:35:57 :: publishing :: omero#OmeroJava-test 00:35:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-593-15588f48ac-ice36-b47.jar 00:35:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-593-15588f48ac-ice36-b47.xml 00:35:57 00:35:57 build-eclipse: 00:35:57 No sub-builds to iterate on 00:35:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:58 00:35:58 retrieve: 00:35:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:59 00:35:59 prepare: 00:35:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:36:00 00:36:00 release-clients: 00:36:00 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-593-15588f48ac-ice36-b47.zip 00:36:05 00:36:05 release-zip: 00:36:05 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-593-15588f48ac-ice36-b47.zip 00:36:16 00:36:16 BUILD SUCCESSFUL 00:36:16 Total time: 1 minute 19 seconds 00:36:16 ++ '[' -d .git ']' 00:36:16 ++ python3 ./build.py release-src 00:36:16 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:36:16 00:36:16 release-src-git: 00:36:16 Releasing openmicroscopy-5.6.3-593-15588f48ac-ice36-b47 00:36:18 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-593-15588f48ac-ice36-b47.zip 00:36:18 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-593-15588f48ac-ice36-b47-base.zip 00:36:19 00:36:19 BUILD SUCCESSFUL 00:36:19 Total time: 3 seconds 00:36:19 ++ echo BUILD_NUMBER=47 00:36:19 ++ echo OMERO_BRANCH=merge_ci 00:36:19 ++ git_info 00:36:19 +++ git rev-parse HEAD 00:36:19 ++ HEAD=15588f48ac1217787ce41f66056ee7ee58e84196 00:36:19 ++ git log --max-count=1 15588f48ac1217787ce41f66056ee7ee58e84196 00:36:19 ++ env 00:36:19 ++ sort 00:36:19 Archiving artifacts 00:36:35 Finished: SUCCESS