00:38:58 Started by upstream project "Trigger" build number 583 00:38:58 originally caused by: 00:38:58 Started by timer 00:38:58 Running as SYSTEM 00:38:58 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:38:58 The recommended git tool is: NONE 00:38:58 No credentials specified 00:38:58 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:38:58 Fetching changes from the remote Git repository 00:38:58 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:38:58 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:38:58 > git --version # timeout=10 00:38:58 > git --version # 'git version 2.43.5' 00:38:58 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:38:59 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:38:59 Checking out Revision 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 (origin/merge_ci) 00:38:59 > git config core.sparsecheckout # timeout=10 00:38:59 > git checkout -f 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 # timeout=10 00:38:59 Commit message: "Add version.properties to etc/omero.properties" 00:38:59 > git rev-list --no-walk 7fbb1ae34b337c59dfcf37f1bf118c68b8addd5d # timeout=10 00:38:59 Cleaning workspace 00:38:59 > git rev-parse --verify HEAD # timeout=10 00:38:59 Resetting working tree 00:38:59 > git reset --hard # timeout=10 00:38:59 > git clean -fdx # timeout=10 00:38:59 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 484 00:38:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13845036484556992186.sh 00:38:59 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 00:38:59 + cd src 00:38:59 + export OMERO_BRANCH=merge_ci 00:38:59 + OMERO_BRANCH=merge_ci 00:38:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:38:59 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:38:59 + source /home/omero/settings.env 00:38:59 ++ OMERO_DB_HOST=pg 00:38:59 ++ OMERO_DB_USER=postgres 00:38:59 ++ OMERO_DB_PASS= 00:38:59 ++ OMERO_ROOT_PASS=omero 00:38:59 ++ OMERO_DATA_DIR=/OMERO 00:38:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:38:59 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:39:03 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:39:03 Collecting zeroc-ice==3.6.5 00:39:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:39:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 5.0 MB/s eta 0:00:00 00:39:07 Installing collected packages: zeroc-ice 00:39:08 Successfully installed zeroc-ice-3.6.5 00:39:08 00:39:08 [notice] A new release of pip available: 22.3.1 -> 25.2 00:39:08 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:39:08 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:39:08 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:39:09 Collecting setuptools<66 00:39:09 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:39:09 Collecting omero-py 00:39:09 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 00:39:09 Collecting urllib3<2 00:39:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:39:09 Collecting appdirs 00:39:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:39:09 Collecting future 00:39:09 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:39:09 Collecting numpy<3 00:39:09 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:39:10 Collecting Pillow>=10.0.0 00:39:10 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 00:39:10 Collecting PyYAML 00:39:10 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:39:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:39:10 Collecting requests 00:39:10 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 00:39:10 Collecting portalocker 00:39:10 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:39:10 Collecting charset_normalizer<4,>=2 00:39:10 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) 00:39:10 Collecting idna<4,>=2.5 00:39:11 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:39:11 Collecting certifi>=2017.4.17 00:39:11 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) 00:39:11 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:39:11 Attempting uninstall: setuptools 00:39:11 Found existing installation: setuptools 65.5.1 00:39:11 Uninstalling setuptools-65.5.1: 00:39:11 Successfully uninstalled setuptools-65.5.1 00:39:17 Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 00:39:17 00:39:17 [notice] A new release of pip available: 22.3.1 -> 25.2 00:39:17 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:39:17 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:39:17 ++ deactivate nondestructive 00:39:17 ++ '[' -n '' ']' 00:39:17 ++ '[' -n '' ']' 00:39:17 ++ hash -r 00:39:17 ++ '[' -n '' ']' 00:39:17 ++ unset VIRTUAL_ENV 00:39:17 ++ unset VIRTUAL_ENV_PROMPT 00:39:17 ++ '[' '!' nondestructive = nondestructive ']' 00:39:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:39:17 ++ export VIRTUAL_ENV 00:39:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:39:17 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:39:17 ++ export PATH 00:39:17 ++ '[' -n '' ']' 00:39:17 ++ '[' -z '' ']' 00:39:17 ++ _OLD_VIRTUAL_PS1= 00:39:17 ++ PS1='(omero-virtualenv) ' 00:39:17 ++ export PS1 00:39:17 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:39:17 ++ export VIRTUAL_ENV_PROMPT 00:39:17 ++ hash -r 00:39:17 + source docs/hudson/OMERO.sh 00:39:17 ++ set -e 00:39:17 ++ set -u 00:39:17 ++ set -x 00:39:17 ++ source docs/hudson/functions.sh 00:39:17 ++ echo Building merge_ci 00:39:17 Building merge_ci 00:39:17 ++ python3 ./build.py build-dev release-all 00:39:17 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:39:17 00:39:17 check-ivy: 00:39:17 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:39:17 Created dir: /home/omero/workspace/OMERO-build/src/target 00:39:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:18 00:39:18 build-scons: 00:39:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:39:18 No sub-builds to iterate on 00:39:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:39:18 00:39:18 buildlist: 00:39:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:19 00:39:19 clean: 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:19 00:39:19 python-clean: 00:39:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:19 warnings.warn( 00:39:19 running clean 00:39:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:39:19 00:39:19 python-clean: 00:39:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:19 warnings.warn( 00:39:19 running clean 00:39:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:39:20 00:39:20 python-clean: 00:39:20 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:39:20 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:39:20 warnings.warn( 00:39:20 running clean 00:39:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:39:20 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:39:20 00:39:20 build-scons: 00:39:20 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:39:20 00:39:20 build: 00:39:20 No sub-builds to iterate on 00:39:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:39:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:39:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:39:20 00:39:20 tools-init: 00:39:20 no-op 00:39:20 00:39:20 retrieve: 00:39:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:39:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:39:21 WARNING: An illegal reflective access operation has occurred 00:39:21 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:39:21 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:39:21 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:39:21 WARNING: All illegal access operations will be denied in a future release 00:40:12 00:40:12 prepare: 00:40:12 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:40:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:40:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:40:12 00:40:12 pre-compile: 00:40:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:13 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:40:13 00:40:13 compile: 00:40:13 no-op 00:40:13 00:40:13 package: 00:40:13 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:40:13 00:40:13 install: 00:40:13 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-6acd4e3b0d-ice36-b491 :: integration :: Mon Aug 11 00:39:20 UTC 2025 00:40:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:40:13 :: publishing :: omero#omero_client 00:40:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6acd4e3b0d-ice36-b491/omero_client-5.6.3-574-6acd4e3b0d-ice36-b491.jar 00:40:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6acd4e3b0d-ice36-b491/omero_client-5.6.3-574-6acd4e3b0d-ice36-b491.xml 00:40:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:14 00:40:14 retrieve: 00:40:14 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:14 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:14 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:40:14 00:40:14 dist: 00:40:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:40:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:40:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:40:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:40:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:40:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:40:14 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:40:14 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:40:14 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:40:14 00:40:14 copy-licenses: 00:40:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:40:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:40:14 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:40:14 00:40:14 copy-history: 00:40:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:40:14 00:40:14 copy-etc: 00:40:14 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:40:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:40:14 00:40:14 copy-sql: 00:40:14 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:40:19 00:40:19 copy-server: 00:40:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:40:19 00:40:19 copy-client: 00:40:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:40:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:40:20 00:40:20 update-version: 00:40:20 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:40:20 00:40:20 create-workdirs: 00:40:20 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:40:20 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:40:20 00:40:20 copy-luts: 00:40:20 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:40:20 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:40:20 00:40:20 test-compile: 00:40:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:40:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:21 00:40:21 testng-init: 00:40:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:25 00:40:24,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:40:25 00:40:24,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - No custom configurators were discovered as a service. 00:40:25 00:40:24,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:40:25 00:40:24,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:40:25 00:40:24,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:40:25 00:40:24,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:40:25 00:40:24,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:40:25 00:40:24,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:40:25 00:40:24,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:40:25 00:40:24,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:40:25 00:40:24,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:40:25 00:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs multiple times on the classpath. 00:40:25 00:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:40:25 00:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:40:25 00:40:25,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:40:25 00:40:25,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:40:25 00:40:25,070 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:40:25 00:40:25,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:40:25 00:40:25,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - Please move "immediateFlush" property into the enclosing appender. 00:40:25 00:40:25,135 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - Setting the "immediateFlush" property of the enclosing appender to true 00:40:25 00:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:40:25 00:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:40:25 00:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:40:25 00:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:40:25 00:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:40:25 00:40:25,137 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:40:25 00:40:25,138 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@502aa66a - End of configuration. 00:40:25 00:40:25,140 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5a06fcfc - Registering current configuration as safe fallback point 00:40:25 00:40:25,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:40:25 00:40:25 lifecycle.test-compile: 00:40:25 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:40:25 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:40:25 warning: [options] bootstrap class path not set in conjunction with -source 8 00:40:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:26 import omero.grid.RawAccessRequest; 00:40:26 ^ 00:40:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:26 import omero.grid.RawAccessRequest; 00:40:26 ^ 00:40:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:26 import omero.grid.RawAccessRequest; 00:40:26 ^ 00:40:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:26 import omero.model.ImportJob; 00:40:26 ^ 00:40:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:40:26 import omero.model.ImportJobI; 00:40:26 ^ 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:40:27 IObject link = (IObject) linkClass.newInstance(); 00:40:27 ^ 00:40:27 where T is a type-variable: 00:40:27 T extends Object declared in class Class 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:40:27 T copy = (T) obj.getClass().newInstance(); 00:40:27 ^ 00:40:27 where T is a type-variable: 00:40:27 T extends Object declared in class Class 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:27 RawAccessRequest raw = new RawAccessRequest(); 00:40:27 ^ 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:27 RawAccessRequest raw = new RawAccessRequest(); 00:40:27 ^ 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:40:27 raw.repoUuid = legacy.root().getHash().getValue(); 00:40:27 ^ 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:40:27 raw.command = "rm"; 00:40:27 ^ 00:40:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:40:27 raw.args = Arrays.asList(path); 00:40:27 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:40:28 final IObject link = linkClass.newInstance(); 00:40:28 ^ 00:40:28 where T is a type-variable: 00:40:28 T extends Object declared in class Class 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:40:28 originalLink.setChild(annotationClass.newInstance()); 00:40:28 ^ 00:40:28 where T is a type-variable: 00:40:28 T extends Object declared in class Class 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:40:28 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:28 final RawAccessRequest request = new RawAccessRequest(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:28 final RawAccessRequest request = new RawAccessRequest(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:40:28 request.repoUuid = repo.root().getHash().getValue(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:40:28 request.command = "exists"; 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:40:28 request.args = Collections.singletonList(dirPath); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:28 final RawAccessRequest request = new RawAccessRequest(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:40:28 final RawAccessRequest request = new RawAccessRequest(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:40:28 request.repoUuid = repo.root().getHash().getValue(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:40:28 request.command = "exists"; 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:40:28 request.args = Collections.singletonList(dirName); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:28 final ImportJob importJob = new ImportJobI(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:40:28 final ImportJob importJob = new ImportJobI(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:40:28 importJob.setImageName(omero.rtypes.rstring(name)); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:40:28 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:40:28 final String savedName = sent.getImageName().getValue().toString(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:40:28 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:40:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:40:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:40:28 ^ 00:40:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:40:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:40:28 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 RoiResult r = svc.findByImage(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:40:29 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:40:29 table = svc.getTable(f.getId().getValue()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 RoiResult r = svc.findByImage(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:40:29 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:40:29 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:40:29 svc.getShapeStatsRestricted( 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:40:29 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:40:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:40:29 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:40:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:40:29 request.typesToIgnore = Collections.singletonList("Annotation"); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:40:29 request.typesToIgnore = Collections.singletonList("Annotation"); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:40:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:40:29 p2.setRelatedTo(p1); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:40:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:40:29 pixels1.setRelatedTo(pixels2); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:40:29 Pixels pixels = pixels1.getRelatedTo(); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:40:29 Assert.assertNull(pixels1.getRelatedTo()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:40:29 pixels1.setRelatedTo(pixels2); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:40:29 Pixels pixels = pixels1.getRelatedTo(); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:40:29 Assert.assertNull(pixels1.getRelatedTo()); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:40:29 ^ 00:40:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:40:29 ^ 00:40:29 Note: Some input files use unchecked or unsafe operations. 00:40:29 Note: Recompile with -Xlint:unchecked for details. 00:40:29 88 warnings 00:40:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_620982600.tmp 00:40:29 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:40:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:30 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-6acd4e3b0d-ice36-b491 :: integration :: Mon Aug 11 00:40:20 UTC 2025 00:40:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:40:30 :: publishing :: omero#OmeroJava-test 00:40:30 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6acd4e3b0d-ice36-b491.jar 00:40:30 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6acd4e3b0d-ice36-b491.xml 00:40:30 00:40:30 build-eclipse: 00:40:30 No sub-builds to iterate on 00:40:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:30 00:40:30 retrieve: 00:40:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:32 00:40:32 prepare: 00:40:32 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:40:33 00:40:33 release-clients: 00:40:33 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-6acd4e3b0d-ice36-b491.zip 00:40:39 00:40:39 release-zip: 00:40:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-6acd4e3b0d-ice36-b491.zip 00:40:50 00:40:50 BUILD SUCCESSFUL 00:40:50 Total time: 1 minute 33 seconds 00:40:50 ++ '[' -d .git ']' 00:40:50 ++ python3 ./build.py release-src 00:40:50 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:40:51 00:40:51 release-src-git: 00:40:51 Releasing openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491 00:40:52 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491.zip 00:40:52 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491-base.zip 00:40:53 00:40:53 BUILD SUCCESSFUL 00:40:53 Total time: 3 seconds 00:40:54 ++ echo BUILD_NUMBER=491 00:40:54 ++ echo OMERO_BRANCH=merge_ci 00:40:54 ++ git_info 00:40:54 +++ git rev-parse HEAD 00:40:54 ++ HEAD=6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 00:40:54 ++ git log --max-count=1 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 00:40:54 ++ env 00:40:54 ++ sort 00:40:54 Archiving artifacts 00:41:18 Finished: SUCCESS