00:40:21 Started by upstream project "Trigger" build number 73 00:40:21 originally caused by: 00:40:21 Started by timer 00:40:21 Running as SYSTEM 00:40:21 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:40:21 The recommended git tool is: NONE 00:40:21 No credentials specified 00:40:21 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:40:21 Fetching changes from the remote Git repository 00:40:21 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:40:21 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:40:21 > git --version # timeout=10 00:40:21 > git --version # 'git version 2.47.3' 00:40:21 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:40:23 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:40:23 Checking out Revision 6c88b4e1e569fba79cc1fb501a00668911bc2a84 (origin/merge_ci) 00:40:23 > git config core.sparsecheckout # timeout=10 00:40:23 > git checkout -f 6c88b4e1e569fba79cc1fb501a00668911bc2a84 # timeout=10 00:40:24 Commit message: "Add version.properties to etc/omero.properties" 00:40:24 > git rev-list --no-walk 96af868b72aef8b51c5b64f89069ce82e756fc3e # timeout=10 00:40:24 Cleaning workspace 00:40:24 > git rev-parse --verify HEAD # timeout=10 00:40:24 Resetting working tree 00:40:24 > git reset --hard # timeout=10 00:40:24 > git clean -fdx # timeout=10 00:40:24 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 46 00:40:24 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17064127111227361860.sh 00:40:24 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 00:40:24 + cd src 00:40:24 + export OMERO_BRANCH=merge_ci 00:40:24 + OMERO_BRANCH=merge_ci 00:40:24 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:40:24 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:40:24 + source /home/omero/settings.env 00:40:24 ++ OMERO_DB_HOST=pg 00:40:24 ++ OMERO_DB_USER=postgres 00:40:24 ++ OMERO_DB_PASS= 00:40:24 ++ OMERO_ROOT_PASS=omero 00:40:24 ++ OMERO_DATA_DIR=/OMERO 00:40:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:40:24 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:40:28 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:40:29 Collecting zeroc-ice==3.6.5 00:40:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:40:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 18.1 MB/s eta 0:00:00 00:40:31 Installing collected packages: zeroc-ice 00:40:32 Successfully installed zeroc-ice-3.6.5 00:40:32 00:40:32 [notice] A new release of pip available: 22.3.1 -> 26.0.1 00:40:32 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:40:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:40:32 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:40:33 Collecting setuptools<66 00:40:33 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:40:33 Collecting omero-py 00:40:33 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB) 00:40:33 Collecting appdirs 00:40:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:40:33 Collecting future 00:40:33 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:40:34 Collecting numpy<3,>=2 00:40:34 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:40:35 Collecting Pillow>=10.0.0 00:40:35 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:40:35 Collecting PyYAML 00:40:35 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:40:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:40:35 Collecting requests 00:40:35 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:40:35 Collecting portalocker 00:40:35 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:40:35 Collecting charset_normalizer<4,>=2 00:40:36 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:40:36 Collecting idna<4,>=2.5 00:40:36 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:40:36 Collecting urllib3<3,>=1.21.1 00:40:36 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 00:40:36 Collecting certifi>=2017.4.17 00:40:36 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 00:40:36 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:40:36 Attempting uninstall: setuptools 00:40:36 Found existing installation: setuptools 65.5.1 00:40:36 Uninstalling setuptools-65.5.1: 00:40:36 Successfully uninstalled setuptools-65.5.1 00:40:42 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.2 omero-py-5.22.0 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3 00:40:42 00:40:42 [notice] A new release of pip available: 22.3.1 -> 26.0.1 00:40:42 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:40:42 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:40:42 ++ deactivate nondestructive 00:40:42 ++ '[' -n '' ']' 00:40:42 ++ '[' -n '' ']' 00:40:42 ++ hash -r 00:40:42 ++ '[' -n '' ']' 00:40:42 ++ unset VIRTUAL_ENV 00:40:42 ++ unset VIRTUAL_ENV_PROMPT 00:40:42 ++ '[' '!' nondestructive = nondestructive ']' 00:40:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:40:42 ++ export VIRTUAL_ENV 00:40:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:40:42 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:40:42 ++ export PATH 00:40:42 ++ '[' -n '' ']' 00:40:42 ++ '[' -z '' ']' 00:40:42 ++ _OLD_VIRTUAL_PS1= 00:40:42 ++ PS1='(omero-virtualenv) ' 00:40:42 ++ export PS1 00:40:42 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:40:42 ++ export VIRTUAL_ENV_PROMPT 00:40:42 ++ hash -r 00:40:42 + source docs/hudson/OMERO.sh 00:40:42 ++ set -e 00:40:42 ++ set -u 00:40:42 ++ set -x 00:40:42 ++ source docs/hudson/functions.sh 00:40:42 ++ echo Building merge_ci 00:40:42 Building merge_ci 00:40:42 ++ python3 ./build.py build-dev release-all 00:40:42 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:40:43 00:40:43 check-ivy: 00:40:43 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:40:43 Created dir: /home/omero/workspace/OMERO-build/src/target 00:40:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:44 00:40:44 build-scons: 00:40:44 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:44 No sub-builds to iterate on 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:40:44 00:40:44 buildlist: 00:40:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:40:44 00:40:44 clean: 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:44 00:40:44 python-clean: 00:40:44 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:44 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-6c88b4e1e5-ice36-b50') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:44 warnings.warn( 00:40:44 running clean 00:40:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:40:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:45 00:40:45 python-clean: 00:40:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-6c88b4e1e5-ice36-b50') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:45 warnings.warn( 00:40:45 running clean 00:40:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:40:45 00:40:45 python-clean: 00:40:45 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:40:45 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-593-6c88b4e1e5-ice36-b50') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:40:45 warnings.warn( 00:40:45 running clean 00:40:45 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:40:45 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:40:45 00:40:45 build-scons: 00:40:45 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:40:45 00:40:45 build: 00:40:45 No sub-builds to iterate on 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:40:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:40:45 00:40:45 tools-init: 00:40:45 no-op 00:40:46 00:40:46 retrieve: 00:40:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:40:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:33 00:41:33 prepare: 00:41:33 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:41:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:41:33 00:41:33 pre-compile: 00:41:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:41:33 00:41:33 compile: 00:41:33 no-op 00:41:33 00:41:33 package: 00:41:33 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:41:34 00:41:34 install: 00:41:34 :: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-593-6c88b4e1e5-ice36-b50 :: integration :: Wed Feb 11 00:40:45 UTC 2026 00:41:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:41:34 :: publishing :: omero#omero_client 00:41:34 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-593-6c88b4e1e5-ice36-b50/omero_client-5.6.3-593-6c88b4e1e5-ice36-b50.jar 00:41:34 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-593-6c88b4e1e5-ice36-b50/omero_client-5.6.3-593-6c88b4e1e5-ice36-b50.xml 00:41:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:34 00:41:34 retrieve: 00:41:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:34 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:41:34 00:41:34 dist: 00:41:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:41:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:41:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:41:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:41:34 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:41:34 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:41:34 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:41:34 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:41:34 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:41:35 00:41:35 copy-licenses: 00:41:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:41:35 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:41:35 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:41:35 00:41:35 copy-history: 00:41:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:41:35 00:41:35 copy-etc: 00:41:35 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:41:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:41:35 00:41:35 copy-sql: 00:41:35 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:41:42 00:41:42 copy-server: 00:41:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:41:42 00:41:42 copy-client: 00:41:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:41:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:41:43 00:41:43 update-version: 00:41:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:41:43 00:41:43 create-workdirs: 00:41:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:41:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:41:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 00:41:43 00:41:43 copy-luts: 00:41:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:41:43 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:41:43 00:41:43 test-compile: 00:41:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:41:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:41:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:41:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:41:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:41:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:41:44 00:41:44 testng-init: 00:41:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:48 00:41:47,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 00:41:48 00:41:47,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - No custom configurators were discovered as a service. 00:41:48 00:41:47,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:48 00:41:47,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:48 00:41:47,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:41:48 00:41:47,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:41:48 00:41:47,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:41:48 00:41:47,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:48 00:41:47,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:48 00:41:47,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:41:48 00:41:47,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:48 00:41:47,741 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2012ed86 - Resource [logback.xml] occurs multiple times on the classpath. 00:41:48 00:41:47,741 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2012ed86 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:48 00:41:47,741 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2012ed86 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:41:48 00:41:47,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:41:48 00:41:47,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:41:48 00:41:47,955 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:41:48 00:41:47,957 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5c512d91 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:41:48 00:41:47,957 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5c512d91 - Please move "immediateFlush" property into the enclosing appender. 00:41:48 00:41:48,009 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5c512d91 - Setting the "immediateFlush" property of the enclosing appender to true 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:41:48 00:41:48,010 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:41:48 00:41:48,011 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6022a4c4 - End of configuration. 00:41:48 00:41:48,013 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@11092844 - Registering current configuration as safe fallback point 00:41:48 00:41:48,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@30082a5e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:41:48 00:41:48 lifecycle.test-compile: 00:41:48 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:48 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:41:48 warning: [options] bootstrap class path not set in conjunction with -source 8 00:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:49 import omero.grid.RawAccessRequest; 00:41:49 ^ 00:41:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:49 import omero.grid.RawAccessRequest; 00:41:49 ^ 00:41:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:50 import omero.grid.RawAccessRequest; 00:41:50 ^ 00:41:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:50 import omero.model.ImportJob; 00:41:50 ^ 00:41:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:41:50 import omero.model.ImportJobI; 00:41:50 ^ 00:41:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:41:50 IObject link = (IObject) linkClass.newInstance(); 00:41:50 ^ 00:41:50 where T is a type-variable: 00:41:50 T extends Object declared in class Class 00:41:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:41:50 T copy = (T) obj.getClass().newInstance(); 00:41:50 ^ 00:41:50 where T is a type-variable: 00:41:50 T extends Object declared in class Class 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 RawAccessRequest raw = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 RawAccessRequest raw = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:51 raw.repoUuid = legacy.root().getHash().getValue(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:51 raw.command = "rm"; 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:51 raw.args = Arrays.asList(path); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:41:51 final IObject link = linkClass.newInstance(); 00:41:51 ^ 00:41:51 where T is a type-variable: 00:41:51 T extends Object declared in class Class 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:41:51 originalLink.setChild(annotationClass.newInstance()); 00:41:51 ^ 00:41:51 where T is a type-variable: 00:41:51 T extends Object declared in class Class 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:51 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 final RawAccessRequest request = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 final RawAccessRequest request = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:51 request.repoUuid = repo.root().getHash().getValue(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:51 request.command = "exists"; 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:51 request.args = Collections.singletonList(dirPath); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 final RawAccessRequest request = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:41:51 final RawAccessRequest request = new RawAccessRequest(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:41:51 request.repoUuid = repo.root().getHash().getValue(); 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:41:51 request.command = "exists"; 00:41:51 ^ 00:41:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:41:51 request.args = Collections.singletonList(dirName); 00:41:51 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:52 final ImportJob importJob = new ImportJobI(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:41:52 final ImportJob importJob = new ImportJobI(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:41:52 importJob.setImageName(omero.rtypes.rstring(name)); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:41:52 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:41:52 final String savedName = sent.getImageName().getValue().toString(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:41:52 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:41:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:41:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:41:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 RoiResult r = svc.findByImage(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:41:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:41:52 table = svc.getTable(f.getId().getValue()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 RoiResult r = svc.findByImage(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:41:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:41:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 00:41:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 00:41:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:41:52 svc.getShapeStatsRestricted( 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:41:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:52 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:52 request.typesToIgnore = Collections.singletonList("Annotation"); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:41:52 request.typesToIgnore = Collections.singletonList("Annotation"); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:52 p2.setRelatedTo(p1); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:52 pixels1.setRelatedTo(pixels2); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:52 Pixels pixels = pixels1.getRelatedTo(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:52 Assert.assertNull(pixels1.getRelatedTo()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:41:52 pixels1.setRelatedTo(pixels2); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:52 Pixels pixels = pixels1.getRelatedTo(); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:41:52 Assert.assertNull(pixels1.getRelatedTo()); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:41:52 ^ 00:41:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:41:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:41:52 ^ 00:41:53 Note: Some input files use unchecked or unsafe operations. 00:41:53 Note: Recompile with -Xlint:unchecked for details. 00:41:53 88 warnings 00:41:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1273722667.tmp 00:41:53 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:41:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:53 :: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-593-6c88b4e1e5-ice36-b50 :: integration :: Wed Feb 11 00:41:44 UTC 2026 00:41:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:41:53 :: publishing :: omero#OmeroJava-test 00:41:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-593-6c88b4e1e5-ice36-b50.jar 00:41:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-593-6c88b4e1e5-ice36-b50.xml 00:41:53 00:41:53 build-eclipse: 00:41:53 No sub-builds to iterate on 00:41:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:41:53 00:41:53 retrieve: 00:41:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:41:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:55 00:41:55 prepare: 00:41:55 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:41:57 00:41:57 release-clients: 00:41:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-593-6c88b4e1e5-ice36-b50.zip 00:42:02 00:42:02 release-zip: 00:42:02 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50.zip 00:42:12 00:42:12 BUILD SUCCESSFUL 00:42:12 Total time: 1 minute 30 seconds 00:42:12 ++ '[' -d .git ']' 00:42:12 ++ python3 ./build.py release-src 00:42:12 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:42:13 00:42:13 release-src-git: 00:42:13 Releasing openmicroscopy-5.6.3-593-6c88b4e1e5-ice36-b50 00:42:14 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-593-6c88b4e1e5-ice36-b50.zip 00:42:14 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-593-6c88b4e1e5-ice36-b50-base.zip 00:42:16 00:42:16 BUILD SUCCESSFUL 00:42:16 Total time: 3 seconds 00:42:16 ++ echo BUILD_NUMBER=50 00:42:16 ++ echo OMERO_BRANCH=merge_ci 00:42:16 ++ git_info 00:42:16 +++ git rev-parse HEAD 00:42:16 ++ HEAD=6c88b4e1e569fba79cc1fb501a00668911bc2a84 00:42:16 ++ git log --max-count=1 6c88b4e1e569fba79cc1fb501a00668911bc2a84 00:42:16 ++ env 00:42:16 ++ sort 00:42:16 Archiving artifacts 00:42:32 Finished: SUCCESS