14:59:06 Started by upstream project "Trigger" build number 24 14:59:06 originally caused by: 14:59:06 Started by user devspace 14:59:06 Running as SYSTEM 14:59:06 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 14:59:06 The recommended git tool is: NONE 14:59:06 No credentials specified 14:59:06 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 14:59:06 Fetching changes from the remote Git repository 14:59:06 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 14:59:06 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 14:59:06 > git --version # timeout=10 14:59:06 > git --version # 'git version 2.47.3' 14:59:06 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 14:59:08 > git rev-parse origin/merge_ci^{commit} # timeout=10 14:59:08 Checking out Revision d52c0e2f83e8feb78419eda02dec53d1bb9207d6 (origin/merge_ci) 14:59:08 > git config core.sparsecheckout # timeout=10 14:59:08 > git checkout -f d52c0e2f83e8feb78419eda02dec53d1bb9207d6 # timeout=10 14:59:08 Commit message: "Add version.properties to etc/omero.properties" 14:59:08 > git rev-list --no-walk 8213c47762edead35523b708e0cf6e82f096e796 # timeout=10 14:59:08 Cleaning workspace 14:59:08 > git rev-parse --verify HEAD # timeout=10 14:59:08 Resetting working tree 14:59:08 > git reset --hard # timeout=10 14:59:08 > git clean -fdx # timeout=10 14:59:09 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6 14:59:09 [OMERO-build] $ /bin/bash -xe /tmp/jenkins3693649379277060113.sh 14:59:09 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 14:59:09 + cd src 14:59:09 + export OMERO_BRANCH=merge_ci 14:59:09 + OMERO_BRANCH=merge_ci 14:59:09 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 14:59:09 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 14:59:09 + source /home/omero/settings.env 14:59:09 ++ OMERO_DB_HOST=pg 14:59:09 ++ OMERO_DB_USER=postgres 14:59:09 ++ OMERO_DB_PASS= 14:59:09 ++ OMERO_ROOT_PASS=omero 14:59:09 ++ OMERO_DATA_DIR=/OMERO 14:59:09 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 14:59:09 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 14:59:12 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 14:59:12 Collecting zeroc-ice==3.6.5 14:59:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 14:59:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.2 MB/s eta 0:00:00 14:59:15 Installing collected packages: zeroc-ice 14:59:16 Successfully installed zeroc-ice-3.6.5 14:59:16 14:59:16 [notice] A new release of pip available: 22.3.1 -> 25.3 14:59:16 [notice] To update, run: python3.11 -m pip install --upgrade pip 14:59:16 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 14:59:16 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 14:59:16 Collecting setuptools<66 14:59:16 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 14:59:17 Collecting omero-py 14:59:17 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 14:59:17 Collecting appdirs 14:59:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 14:59:17 Collecting future 14:59:17 Using cached future-1.0.0-py3-none-any.whl (491 kB) 14:59:17 Collecting numpy<3 14:59:18 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB) 14:59:18 Collecting Pillow>=10.0.0 14:59:18 Downloading pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 14:59:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 21.4 MB/s eta 0:00:00 14:59:19 Collecting PyYAML 14:59:19 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 14:59:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 14:59:19 Collecting requests 14:59:19 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 14:59:19 Collecting portalocker 14:59:19 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 14:59:19 Collecting charset_normalizer<4,>=2 14:59:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 14:59:19 Collecting idna<4,>=2.5 14:59:19 Using cached idna-3.11-py3-none-any.whl (71 kB) 14:59:19 Collecting urllib3<3,>=1.21.1 14:59:19 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) 14:59:19 Collecting certifi>=2017.4.17 14:59:20 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB) 14:59:20 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 14:59:20 Attempting uninstall: setuptools 14:59:20 Found existing installation: setuptools 65.5.1 14:59:20 Uninstalling setuptools-65.5.1: 14:59:20 Successfully uninstalled setuptools-65.5.1 14:59:25 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.11.12 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.0 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.2 14:59:25 14:59:25 [notice] A new release of pip available: 22.3.1 -> 25.3 14:59:25 [notice] To update, run: python3.11 -m pip install --upgrade pip 14:59:25 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 14:59:25 ++ deactivate nondestructive 14:59:25 ++ '[' -n '' ']' 14:59:25 ++ '[' -n '' ']' 14:59:25 ++ hash -r 14:59:25 ++ '[' -n '' ']' 14:59:25 ++ unset VIRTUAL_ENV 14:59:25 ++ unset VIRTUAL_ENV_PROMPT 14:59:25 ++ '[' '!' nondestructive = nondestructive ']' 14:59:25 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 14:59:25 ++ export VIRTUAL_ENV 14:59:25 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:59:25 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:59:25 ++ export PATH 14:59:25 ++ '[' -n '' ']' 14:59:25 ++ '[' -z '' ']' 14:59:25 ++ _OLD_VIRTUAL_PS1= 14:59:25 ++ PS1='(omero-virtualenv) ' 14:59:25 ++ export PS1 14:59:25 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 14:59:25 ++ export VIRTUAL_ENV_PROMPT 14:59:25 ++ hash -r 14:59:25 + source docs/hudson/OMERO.sh 14:59:25 ++ set -e 14:59:25 ++ set -u 14:59:25 ++ set -x 14:59:25 ++ source docs/hudson/functions.sh 14:59:25 ++ echo Building merge_ci 14:59:25 Building merge_ci 14:59:25 ++ python3 ./build.py build-dev release-all 14:59:25 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 14:59:26 14:59:26 check-ivy: 14:59:26 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 14:59:26 Created dir: /home/omero/workspace/OMERO-build/src/target 14:59:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:59:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:59:27 14:59:27 build-scons: 14:59:27 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:59:27 No sub-builds to iterate on 14:59:27 Entering /home/omero/workspace/OMERO-build/src/components/tools... 14:59:27 14:59:27 buildlist: 14:59:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:59:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:59:27 14:59:27 clean: 14:59:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:59:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:59:28 14:59:28 python-clean: 14:59:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:59:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:59:28 warnings.warn( 14:59:28 running clean 14:59:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 14:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:59:28 14:59:28 python-clean: 14:59:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:59:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:59:28 warnings.warn( 14:59:28 running clean 14:59:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 14:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 14:59:28 14:59:28 python-clean: 14:59:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 14:59:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-578-d52c0e2f83-ice36-b6') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 14:59:28 warnings.warn( 14:59:28 running clean 14:59:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 14:59:28 Deleting directory /home/omero/workspace/OMERO-build/src/target 14:59:28 14:59:28 build-scons: 14:59:28 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 14:59:28 14:59:28 build: 14:59:28 No sub-builds to iterate on 14:59:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:59:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 14:59:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 14:59:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 14:59:29 14:59:29 tools-init: 14:59:29 no-op 14:59:29 14:59:29 retrieve: 14:59:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 14:59:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 14:59:30 WARNING: An illegal reflective access operation has occurred 14:59:30 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 14:59:30 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 14:59:30 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 14:59:30 WARNING: All illegal access operations will be denied in a future release 15:00:31 15:00:31 prepare: 15:00:31 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:00:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 15:00:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 15:00:31 15:00:31 pre-compile: 15:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:00:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 15:00:31 15:00:31 compile: 15:00:31 no-op 15:00:31 15:00:31 package: 15:00:31 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 15:00:32 15:00:32 install: 15:00:32 :: delivering :: omero#omero_client;working@ae19421db1ea :: 5.6.3-578-d52c0e2f83-ice36-b6 :: integration :: Sat Jan 03 14:59:29 UTC 2026 15:00:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 15:00:32 :: publishing :: omero#omero_client 15:00:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-d52c0e2f83-ice36-b6/omero_client-5.6.3-578-d52c0e2f83-ice36-b6.jar 15:00:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-578-d52c0e2f83-ice36-b6/omero_client-5.6.3-578-d52c0e2f83-ice36-b6.xml 15:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:00:32 15:00:32 retrieve: 15:00:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:00:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tools... 15:00:32 15:00:32 dist: 15:00:32 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 15:00:32 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 15:00:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 15:00:32 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 15:00:32 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 15:00:32 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 15:00:32 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 15:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tests... 15:00:32 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 15:00:33 15:00:33 copy-licenses: 15:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 15:00:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 15:00:33 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 15:00:33 15:00:33 copy-history: 15:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 15:00:33 15:00:33 copy-etc: 15:00:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 15:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 15:00:33 15:00:33 copy-sql: 15:00:33 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 15:00:42 15:00:42 copy-server: 15:00:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 15:00:42 15:00:42 copy-client: 15:00:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 15:00:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 15:00:43 15:00:43 update-version: 15:00:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 15:00:43 15:00:43 create-workdirs: 15:00:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 15:00:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 15:00:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 15:00:43 15:00:43 copy-luts: 15:00:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 15:00:43 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 15:00:43 15:00:43 test-compile: 15:00:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 15:00:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:00:44 15:00:44 testng-init: 15:00:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:00:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:00:47 15:00:47,683 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 15:00:47 15:00:47,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - No custom configurators were discovered as a service. 15:00:47 15:00:47,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 15:00:47 15:00:47,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 15:00:47 15:00:47,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 15:00:47 15:00:47,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 15:00:47 15:00:47,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 15:00:47 15:00:47,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 15:00:47 15:00:47,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 15:00:47 15:00:47,693 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 15:00:47 15:00:47,693 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 15:00:47 15:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs multiple times on the classpath. 15:00:47 15:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 15:00:47 15:00:47,694 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@c34e260 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 15:00:47 15:00:47,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 15:00:47 15:00:47,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 15:00:47 15:00:47,908 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 15:00:47 15:00:47,909 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 15:00:47 15:00:47,909 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - Please move "immediateFlush" property into the enclosing appender. 15:00:47 15:00:47,975 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@39342312 - Setting the "immediateFlush" property of the enclosing appender to true 15:00:47 15:00:47,975 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 15:00:47 15:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 15:00:47 15:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 15:00:47 15:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 15:00:47 15:00:47,976 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 15:00:47 15:00:47,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 15:00:47 15:00:47,977 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@243fe859 - End of configuration. 15:00:47 15:00:47,979 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@384edc3b - Registering current configuration as safe fallback point 15:00:47 15:00:47,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@18809db8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 15:00:47 15:00:47 lifecycle.test-compile: 15:00:47 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:00:48 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 15:00:48 warning: [options] bootstrap class path not set in conjunction with -source 8 15:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:49 import omero.grid.RawAccessRequest; 15:00:49 ^ 15:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:49 import omero.grid.RawAccessRequest; 15:00:49 ^ 15:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:49 import omero.grid.RawAccessRequest; 15:00:49 ^ 15:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:49 import omero.model.ImportJob; 15:00:49 ^ 15:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 15:00:49 import omero.model.ImportJobI; 15:00:49 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 15:00:50 IObject link = (IObject) linkClass.newInstance(); 15:00:50 ^ 15:00:50 where T is a type-variable: 15:00:50 T extends Object declared in class Class 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 15:00:50 T copy = (T) obj.getClass().newInstance(); 15:00:50 ^ 15:00:50 where T is a type-variable: 15:00:50 T extends Object declared in class Class 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:50 RawAccessRequest raw = new RawAccessRequest(); 15:00:50 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:50 RawAccessRequest raw = new RawAccessRequest(); 15:00:50 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:00:50 raw.repoUuid = legacy.root().getHash().getValue(); 15:00:50 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 15:00:50 raw.command = "rm"; 15:00:50 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 15:00:50 raw.args = Arrays.asList(path); 15:00:50 ^ 15:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 15:00:50 final IObject link = linkClass.newInstance(); 15:00:50 ^ 15:00:50 where T is a type-variable: 15:00:50 T extends Object declared in class Class 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 15:00:51 originalLink.setChild(annotationClass.newInstance()); 15:00:51 ^ 15:00:51 where T is a type-variable: 15:00:51 T extends Object declared in class Class 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:00:51 RoiResult r = svc.findByImage(id, new RoiOptions()); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:51 final RawAccessRequest request = new RawAccessRequest(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:51 final RawAccessRequest request = new RawAccessRequest(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:00:51 request.repoUuid = repo.root().getHash().getValue(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 15:00:51 request.command = "exists"; 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 15:00:51 request.args = Collections.singletonList(dirPath); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:51 final RawAccessRequest request = new RawAccessRequest(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 15:00:51 final RawAccessRequest request = new RawAccessRequest(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 15:00:51 request.repoUuid = repo.root().getHash().getValue(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 15:00:51 request.command = "exists"; 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 15:00:51 request.args = Collections.singletonList(dirName); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:51 final ImportJob importJob = new ImportJobI(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 15:00:51 final ImportJob importJob = new ImportJobI(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 15:00:51 importJob.setImageName(omero.rtypes.rstring(name)); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 15:00:51 importJob.setImageDescription(omero.rtypes.rstring(desc)); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 15:00:51 final String savedName = sent.getImageName().getValue().toString(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 15:00:51 final String savedDesc = sent.getImageDescription().getValue().toString(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 15:00:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 15:00:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 15:00:51 ^ 15:00:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 15:00:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 15:00:51 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 RoiResult r = svc.findByImage(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 15:00:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 15:00:52 table = svc.getTable(f.getId().getValue()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 RoiResult r = svc.findByImage(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 15:00:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 15:00:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 15:00:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 15:00:52 svc.getShapeStatsRestricted( 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 15:00:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:00:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:00:52 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:00:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:00:52 request.typesToIgnore = Collections.singletonList("Annotation"); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 15:00:52 request.typesToIgnore = Collections.singletonList("Annotation"); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:00:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:00:52 p2.setRelatedTo(p1); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:00:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:00:52 pixels1.setRelatedTo(pixels2); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:00:52 Pixels pixels = pixels1.getRelatedTo(); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:00:52 Assert.assertNull(pixels1.getRelatedTo()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 15:00:52 pixels1.setRelatedTo(pixels2); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:00:52 Pixels pixels = pixels1.getRelatedTo(); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 15:00:52 Assert.assertNull(pixels1.getRelatedTo()); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 15:00:52 ^ 15:00:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 15:00:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 15:00:52 ^ 15:00:52 Note: Some input files use unchecked or unsafe operations. 15:00:52 Note: Recompile with -Xlint:unchecked for details. 15:00:52 88 warnings 15:00:52 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_18198439.tmp 15:00:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 15:00:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:00:52 :: delivering :: omero#OmeroJava-test;working@ae19421db1ea :: 5.6.3-578-d52c0e2f83-ice36-b6 :: integration :: Sat Jan 03 15:00:43 UTC 2026 15:00:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 15:00:52 :: publishing :: omero#OmeroJava-test 15:00:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-d52c0e2f83-ice36-b6.jar 15:00:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-578-d52c0e2f83-ice36-b6.xml 15:00:52 15:00:52 build-eclipse: 15:00:52 No sub-builds to iterate on 15:00:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 15:00:53 15:00:53 retrieve: 15:00:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 15:00:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 15:00:55 15:00:55 prepare: 15:00:55 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 15:00:56 15:00:56 release-clients: 15:00:56 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-578-d52c0e2f83-ice36-b6.zip 15:01:01 15:01:01 release-zip: 15:01:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip 15:01:11 15:01:11 BUILD SUCCESSFUL 15:01:11 Total time: 1 minute 45 seconds 15:01:11 ++ '[' -d .git ']' 15:01:11 ++ python3 ./build.py release-src 15:01:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 15:01:11 15:01:11 release-src-git: 15:01:11 Releasing openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6 15:01:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6.zip 15:01:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6-base.zip 15:01:14 15:01:14 BUILD SUCCESSFUL 15:01:14 Total time: 3 seconds 15:01:14 ++ echo BUILD_NUMBER=6 15:01:14 ++ echo OMERO_BRANCH=merge_ci 15:01:14 ++ git_info 15:01:14 +++ git rev-parse HEAD 15:01:14 ++ HEAD=d52c0e2f83e8feb78419eda02dec53d1bb9207d6 15:01:14 ++ git log --max-count=1 d52c0e2f83e8feb78419eda02dec53d1bb9207d6 15:01:14 ++ env 15:01:14 ++ sort 15:01:14 Archiving artifacts 15:01:30 Finished: SUCCESS