09:56:54 Started by upstream project "Trigger" build number 9 09:56:54 originally caused by: 09:56:54 Started by user devspace 09:56:54 Running as SYSTEM 09:56:54 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 09:56:54 The recommended git tool is: NONE 09:56:54 No credentials specified 09:56:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 09:56:55 Fetching changes from the remote Git repository 09:56:55 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 09:56:55 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 09:56:55 > git --version # timeout=10 09:56:55 > git --version # 'git version 2.39.3' 09:56:55 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:56:57 > git rev-parse origin/merge_ci^{commit} # timeout=10 09:56:57 Checking out Revision 4311821d91f6e298d1c318b0dccca25bb97b7502 (origin/merge_ci) 09:56:57 > git config core.sparsecheckout # timeout=10 09:56:57 > git checkout -f 4311821d91f6e298d1c318b0dccca25bb97b7502 # timeout=10 09:56:58 Commit message: "Add version.properties to etc/omero.properties" 09:56:58 > git rev-list --no-walk 03ab3324c08fafdd78957eabeb78da88e268ff0b # timeout=10 09:56:58 Cleaning workspace 09:56:58 > git rev-parse --verify HEAD # timeout=10 09:56:58 Resetting working tree 09:56:58 > git reset --hard # timeout=10 09:56:58 > git clean -fdx # timeout=10 09:56:59 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6 09:56:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins10993034212909260354.sh 09:56:59 + mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz . 09:56:59 + cd src 09:56:59 + export OMERO_BRANCH=merge_ci 09:56:59 + OMERO_BRANCH=merge_ci 09:56:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 09:56:59 + source /home/omero/settings.env 09:56:59 ++ OMERO_DB_HOST=pg 09:56:59 ++ OMERO_DB_USER=postgres 09:56:59 ++ OMERO_DB_PASS= 09:56:59 ++ OMERO_ROOT_PASS=omero 09:56:59 ++ OMERO_DATA_DIR=/OMERO 09:56:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:56:59 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 09:57:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 09:57:02 Collecting zeroc-ice==3.6.5 09:57:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 09:57:04 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 09:57:04 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 09:57:04 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 09:57:05 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0) 09:57:05 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.0) 09:57:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 09:57:06 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 09:57:06 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 09:57:06 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 09:57:06 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 09:57:06 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 09:57:06 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 09:57:06 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 09:57:06 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 09:57:06 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 09:57:06 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 09:57:06 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 09:57:06 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 09:57:06 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 09:57:06 + source docs/hudson/OMERO.sh 09:57:06 ++ set -e 09:57:06 ++ set -u 09:57:06 ++ set -x 09:57:06 ++ source docs/hudson/functions.sh 09:57:06 ++ echo Building merge_ci 09:57:06 Building merge_ci 09:57:06 ++ python3 ./build.py build-dev release-all 09:57:06 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 09:57:06 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:57:06 09:57:06 check-ivy: 09:57:06 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 09:57:06 Created dir: /home/omero/workspace/OMERO-build/src/target 09:57:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:57:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:57:08 09:57:08 build-scons: 09:57:08 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:57:08 No sub-builds to iterate on 09:57:08 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:57:08 09:57:08 buildlist: 09:57:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:57:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:57:08 09:57:08 clean: 09:57:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:57:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:57:08 09:57:08 python-clean: 09:57:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:57:08 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:57:08 warnings.warn( 09:57:08 running clean 09:57:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:57:09 09:57:09 python-clean: 09:57:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:57:09 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:57:09 warnings.warn( 09:57:09 running clean 09:57:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:57:09 09:57:09 python-clean: 09:57:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:57:09 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-4311821d91-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:57:09 warnings.warn( 09:57:09 running clean 09:57:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 09:57:09 Deleting directory /home/omero/workspace/OMERO-build/src/target 09:57:09 09:57:09 build-scons: 09:57:09 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:57:09 09:57:09 build: 09:57:09 No sub-builds to iterate on 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:57:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:57:09 09:57:09 tools-init: 09:57:09 no-op 09:57:10 09:57:10 retrieve: 09:57:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:57:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:57:10 WARNING: An illegal reflective access operation has occurred 09:57:10 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 09:57:10 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 09:57:10 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 09:57:10 WARNING: All illegal access operations will be denied in a future release 09:58:06 09:58:06 prepare: 09:58:06 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:58:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:58:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:58:06 09:58:06 pre-compile: 09:58:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:58:07 09:58:07 compile: 09:58:07 no-op 09:58:07 09:58:07 package: 09:58:07 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 09:58:07 09:58:07 install: 09:58:07 :: delivering :: omero#omero_client;working@06339221e627 :: 5.6.3-437-4311821d91-ice36 :: integration :: Wed Mar 20 09:57:09 UTC 2024 09:58:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 09:58:07 :: publishing :: omero#omero_client 09:58:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-4311821d91-ice36/omero_client-5.6.3-437-4311821d91-ice36.jar 09:58:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-4311821d91-ice36/omero_client-5.6.3-437-4311821d91-ice36.xml 09:58:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:08 09:58:08 retrieve: 09:58:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:08 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:58:08 09:58:08 dist: 09:58:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 09:58:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 09:58:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:58:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:58:08 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 09:58:08 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 09:58:08 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 09:58:08 Entering /home/omero/workspace/OMERO-build/src/components/tests... 09:58:08 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:58:08 09:58:08 copy-licenses: 09:58:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:58:08 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 09:58:08 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 09:58:08 09:58:08 copy-history: 09:58:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:58:08 09:58:08 copy-etc: 09:58:08 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 09:58:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 09:58:08 09:58:08 copy-sql: 09:58:08 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 09:58:24 09:58:24 copy-server: 09:58:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 09:58:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won 09:58:24 09:58:24 copy-client: 09:58:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 09:58:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 09:58:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won 09:58:25 09:58:25 update-version: 09:58:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 09:58:25 09:58:25 create-workdirs: 09:58:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 09:58:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 09:58:25 09:58:25 copy-luts: 09:58:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:58:25 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:58:25 09:58:25 test-compile: 09:58:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:58:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:58:26 09:58:26 testng-init: 09:58:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:29 09:58:29,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 09:58:29 09:58:29,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - No custom configurators were discovered as a service. 09:58:29 09:58:29,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 09:58:29 09:58:29,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 09:58:29 09:58:29,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 09:58:29 09:58:29,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 09:58:29 09:58:29,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 09:58:29 09:58:29,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 09:58:29 09:58:29,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 09:58:29 09:58:29,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 09:58:29 09:58:29,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:58:29 09:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs multiple times on the classpath. 09:58:29 09:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:58:29 09:58:29,300 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@12ceff30 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 09:58:29 09:58:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 09:58:29 09:58:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 09:58:29 09:58:29,534 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 09:58:29 09:58:29,536 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 09:58:29 09:58:29,536 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - Please move "immediateFlush" property into the enclosing appender. 09:58:29 09:58:29,601 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2d550996 - Setting the "immediateFlush" property of the enclosing appender to true 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 09:58:29 09:58:29,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 09:58:29 09:58:29,603 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@682fec32 - End of configuration. 09:58:29 09:58:29,606 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3ad32e52 - Registering current configuration as safe fallback point 09:58:29 09:58:29,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60a64104 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 09:58:29 09:58:29 lifecycle.test-compile: 09:58:29 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:58:29 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:58:30 warning: [options] bootstrap class path not set in conjunction with -source 8 09:58:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:31 import omero.grid.RawAccessRequest; 09:58:31 ^ 09:58:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:31 import omero.grid.RawAccessRequest; 09:58:31 ^ 09:58:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:31 import omero.grid.RawAccessRequest; 09:58:31 ^ 09:58:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:31 import omero.model.ImportJob; 09:58:31 ^ 09:58:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:58:31 import omero.model.ImportJobI; 09:58:31 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 09:58:32 IObject link = (IObject) linkClass.newInstance(); 09:58:32 ^ 09:58:32 where T is a type-variable: 09:58:32 T extends Object declared in class Class 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 09:58:32 T copy = (T) obj.getClass().newInstance(); 09:58:32 ^ 09:58:32 where T is a type-variable: 09:58:32 T extends Object declared in class Class 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:32 RawAccessRequest raw = new RawAccessRequest(); 09:58:32 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:32 RawAccessRequest raw = new RawAccessRequest(); 09:58:32 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:58:32 raw.repoUuid = legacy.root().getHash().getValue(); 09:58:32 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 09:58:32 raw.command = "rm"; 09:58:32 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 09:58:32 raw.args = Arrays.asList(path); 09:58:32 ^ 09:58:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 09:58:32 final IObject link = linkClass.newInstance(); 09:58:32 ^ 09:58:32 where T is a type-variable: 09:58:32 T extends Object declared in class Class 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 09:58:33 originalLink.setChild(annotationClass.newInstance()); 09:58:33 ^ 09:58:33 where T is a type-variable: 09:58:33 T extends Object declared in class Class 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:58:33 RoiResult r = svc.findByImage(id, new RoiOptions()); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:33 final RawAccessRequest request = new RawAccessRequest(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:33 final RawAccessRequest request = new RawAccessRequest(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:58:33 request.repoUuid = repo.root().getHash().getValue(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 09:58:33 request.command = "exists"; 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 09:58:33 request.args = Collections.singletonList(dirPath); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:33 final RawAccessRequest request = new RawAccessRequest(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:58:33 final RawAccessRequest request = new RawAccessRequest(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:58:33 request.repoUuid = repo.root().getHash().getValue(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 09:58:33 request.command = "exists"; 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 09:58:33 request.args = Collections.singletonList(dirName); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:33 final ImportJob importJob = new ImportJobI(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:58:33 final ImportJob importJob = new ImportJobI(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 09:58:33 importJob.setImageName(omero.rtypes.rstring(name)); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 09:58:33 importJob.setImageDescription(omero.rtypes.rstring(desc)); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:58:33 final String savedName = sent.getImageName().getValue().toString(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:58:33 final String savedDesc = sent.getImageDescription().getValue().toString(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:58:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:58:33 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 09:58:33 ^ 09:58:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:58:33 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 09:58:33 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 RoiResult r = svc.findByImage(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 09:58:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 09:58:34 table = svc.getTable(f.getId().getValue()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 RoiResult r = svc.findByImage(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:58:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:58:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:58:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:58:34 svc.getShapeStatsRestricted( 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:58:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:58:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:58:34 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:58:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:58:34 request.typesToIgnore = Collections.singletonList("Annotation"); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:58:34 request.typesToIgnore = Collections.singletonList("Annotation"); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:58:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:58:34 p2.setRelatedTo(p1); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:58:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:58:34 pixels1.setRelatedTo(pixels2); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:58:34 Pixels pixels = pixels1.getRelatedTo(); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:58:34 Assert.assertNull(pixels1.getRelatedTo()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:58:34 pixels1.setRelatedTo(pixels2); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:58:34 Pixels pixels = pixels1.getRelatedTo(); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:58:34 Assert.assertNull(pixels1.getRelatedTo()); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:58:34 ^ 09:58:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:58:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:58:34 ^ 09:58:35 Note: Some input files use unchecked or unsafe operations. 09:58:35 Note: Recompile with -Xlint:unchecked for details. 09:58:35 88 warnings 09:58:35 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1887349394.tmp 09:58:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 09:58:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:35 :: delivering :: omero#OmeroJava-test;working@06339221e627 :: 5.6.3-437-4311821d91-ice36 :: integration :: Wed Mar 20 09:58:25 UTC 2024 09:58:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 09:58:35 :: publishing :: omero#OmeroJava-test 09:58:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-4311821d91-ice36.jar 09:58:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-4311821d91-ice36.xml 09:58:35 09:58:35 build-eclipse: 09:58:35 No sub-builds to iterate on 09:58:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:58:35 09:58:35 retrieve: 09:58:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:58:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:58:38 09:58:38 prepare: 09:58:38 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:58:39 09:58:39 release-clients: 09:58:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-4311821d91-ice36.zip 09:58:45 09:58:45 release-zip: 09:58:45 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-4311821d91-ice36.zip 09:58:57 09:58:57 BUILD SUCCESSFUL 09:58:57 Total time: 1 minute 51 seconds 09:58:58 ++ '[' -d .git ']' 09:58:58 ++ python3 ./build.py release-src 09:58:58 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 09:58:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:58:58 09:58:58 release-src-git: 09:58:58 Releasing openmicroscopy-5.6.3-437-4311821d91-ice36 09:58:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-4311821d91-ice36.zip 09:58:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-4311821d91-ice36-base.zip 09:59:01 09:59:01 BUILD SUCCESSFUL 09:59:01 Total time: 3 seconds 09:59:01 ++ echo BUILD_NUMBER=6 09:59:01 ++ echo OMERO_BRANCH=merge_ci 09:59:01 ++ git_info 09:59:01 +++ git rev-parse HEAD 09:59:01 ++ HEAD=4311821d91f6e298d1c318b0dccca25bb97b7502 09:59:01 ++ git log --max-count=1 4311821d91f6e298d1c318b0dccca25bb97b7502 09:59:01 ++ env 09:59:01 ++ sort 09:59:01 Archiving artifacts 09:59:29 Finished: SUCCESS