01:20:48 Started by upstream project "Trigger" build number 11 01:20:48 originally caused by: 01:20:48 Started by timer 01:20:48 Running as SYSTEM 01:20:48 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:20:48 The recommended git tool is: NONE 01:20:48 No credentials specified 01:20:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:20:48 Fetching changes from the remote Git repository 01:20:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:20:48 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:20:48 > git --version # timeout=10 01:20:48 > git --version # 'git version 2.52.0' 01:20:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:20:52 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:20:52 Checking out Revision 42a3d638c0cf4cbcca37f4b6cd038f77947d1c38 (origin/merge_ci) 01:20:52 > git config core.sparsecheckout # timeout=10 01:20:52 > git checkout -f 42a3d638c0cf4cbcca37f4b6cd038f77947d1c38 # timeout=10 01:20:54 Commit message: "Add version.properties to etc/omero.properties" 01:20:54 > git rev-list --no-walk 6891a6bb7cc2d094e58582a64fc68198acc7b271 # timeout=10 01:20:55 Cleaning workspace 01:20:55 > git rev-parse --verify HEAD # timeout=10 01:20:55 Resetting working tree 01:20:55 > git reset --hard # timeout=10 01:20:55 > git clean -fdx # timeout=10 01:21:24 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6 01:21:24 [OMERO-build] $ /bin/bash -xe /tmp/jenkins2142226414954268551.sh 01:21:24 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 01:21:24 + cd src 01:21:24 + export OMERO_BRANCH=merge_ci 01:21:24 + OMERO_BRANCH=merge_ci 01:21:24 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:21:24 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 01:21:52 + source /home/omero/settings.env 01:21:52 ++ OMERO_DB_HOST=pg 01:21:52 ++ OMERO_DB_USER=postgres 01:21:52 ++ OMERO_DB_PASS= 01:21:52 ++ OMERO_ROOT_PASS=omero 01:21:52 ++ OMERO_DATA_DIR=/OMERO 01:21:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:21:52 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:22:12 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:22:13 Collecting zeroc-ice==3.6.5 01:22:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:22:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.7 MB/s eta 0:00:00 01:22:16 Installing collected packages: zeroc-ice 01:22:20 Successfully installed zeroc-ice-3.6.5 01:22:20 01:22:20 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:22:20 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:22:20 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 01:22:21 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 01:22:21 Collecting setuptools<66 01:22:21 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 01:22:21 Collecting omero-py 01:22:21 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 01:22:22 Collecting appdirs 01:22:22 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:22:22 Collecting future 01:22:22 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:22:22 Collecting numpy<3,>=2 01:22:22 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:22:23 Collecting Pillow>=10.0.0 01:22:23 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:22:23 Collecting PyYAML 01:22:23 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:22:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:22:24 Collecting requests 01:22:24 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:22:24 Collecting portalocker 01:22:24 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 01:22:24 Collecting charset_normalizer<4,>=2 01:22:24 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 01:22:24 Collecting idna<4,>=2.5 01:22:24 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:22:24 Collecting urllib3<3,>=1.26 01:22:24 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:22:25 Collecting certifi>=2023.5.7 01:22:25 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 01:22:25 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 01:22:26 Attempting uninstall: setuptools 01:22:26 Found existing installation: setuptools 65.5.1 01:22:26 Uninstalling setuptools-65.5.1: 01:22:27 Successfully uninstalled setuptools-65.5.1 01:23:21 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 01:23:21 01:23:21 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:23:21 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:23:21 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 01:23:21 ++ deactivate nondestructive 01:23:21 ++ '[' -n '' ']' 01:23:21 ++ '[' -n '' ']' 01:23:21 ++ hash -r 01:23:21 ++ '[' -n '' ']' 01:23:21 ++ unset VIRTUAL_ENV 01:23:21 ++ unset VIRTUAL_ENV_PROMPT 01:23:21 ++ '[' '!' nondestructive = nondestructive ']' 01:23:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 01:23:21 ++ export VIRTUAL_ENV 01:23:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:23:21 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:23:21 ++ export PATH 01:23:21 ++ '[' -n '' ']' 01:23:21 ++ '[' -z '' ']' 01:23:21 ++ _OLD_VIRTUAL_PS1= 01:23:21 ++ PS1='(omero-virtualenv) ' 01:23:21 ++ export PS1 01:23:21 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 01:23:21 ++ export VIRTUAL_ENV_PROMPT 01:23:21 ++ hash -r 01:23:21 + source docs/hudson/OMERO.sh 01:23:21 ++ set -e 01:23:21 ++ set -u 01:23:21 ++ set -x 01:23:21 ++ source docs/hudson/functions.sh 01:23:21 ++ echo Building merge_ci 01:23:21 Building merge_ci 01:23:21 ++ python3 ./build.py build-dev release-all 01:23:21 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:23:22 01:23:22 check-ivy: 01:23:22 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:23:22 Created dir: /home/omero/workspace/OMERO-build/src/target 01:23:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:24 01:23:24 build-scons: 01:23:24 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:23:26 No sub-builds to iterate on 01:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:23:27 01:23:27 buildlist: 01:23:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:23:27 01:23:27 clean: 01:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:28 01:23:28 python-clean: 01:23:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:23:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-42a3d638c0-ice36-b7') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:23:28 warnings.warn( 01:23:28 running clean 01:23:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:23:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:23:29 01:23:29 python-clean: 01:23:29 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:23:29 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-42a3d638c0-ice36-b7') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:23:29 warnings.warn( 01:23:29 running clean 01:23:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:23:30 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:23:31 01:23:31 python-clean: 01:23:31 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:23:31 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-42a3d638c0-ice36-b7') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:23:31 warnings.warn( 01:23:31 running clean 01:23:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:23:31 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:23:32 01:23:32 build-scons: 01:23:32 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:23:34 01:23:34 build: 01:23:34 No sub-builds to iterate on 01:23:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:23:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:23:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:23:36 01:23:36 tools-init: 01:23:36 no-op 01:23:36 01:23:36 retrieve: 01:23:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:23:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:24:59 01:24:59 prepare: 01:24:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:25:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:25:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:25:00 01:25:00 pre-compile: 01:25:00 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:25:01 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:25:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:25:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:25:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:25:16 01:25:16 compile: 01:25:16 no-op 01:25:16 01:25:16 package: 01:25:16 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:25:20 01:25:20 install: 01:25:20 :: delivering :: omero#omero_client;working@aa391330d99d :: 5.6.3-614-42a3d638c0-ice36-b7 :: integration :: Sun Jul 12 01:23:35 UTC 2026 01:25:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:25:20 :: publishing :: omero#omero_client 01:25:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-42a3d638c0-ice36-b7/omero_client-5.6.3-614-42a3d638c0-ice36-b7.jar 01:25:21 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-42a3d638c0-ice36-b7/omero_client-5.6.3-614-42a3d638c0-ice36-b7.xml 01:25:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:25:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:25:22 01:25:22 retrieve: 01:25:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:25:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:25:22 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:25:22 01:25:22 dist: 01:25:22 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:25:22 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:25:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:25:22 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:25:23 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:25:23 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:25:24 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:25:24 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:25:24 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:25:25 01:25:25 copy-licenses: 01:25:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:25:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:25:25 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:25:25 01:25:25 copy-history: 01:25:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:25:25 01:25:25 copy-etc: 01:25:25 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:25:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:25:26 01:25:26 copy-sql: 01:25:26 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:25:38 01:25:38 copy-server: 01:25:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 01:25:43 01:25:43 copy-client: 01:25:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:25:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 01:25:52 01:25:52 update-version: 01:25:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:25:52 01:25:52 create-workdirs: 01:25:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:25:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:25:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 01:25:52 01:25:52 copy-luts: 01:25:52 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:25:52 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:25:53 01:25:53 test-compile: 01:25:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:25:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:25:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:25:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:25:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:25:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:25:54 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:25:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:25:55 01:25:55 testng-init: 01:25:55 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:25:55 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:26:04 01:26:03,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 01:26:04 01:26:03,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 01:26:04 01:26:03,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:26:04 01:26:03,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:26:04 01:26:03,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:26:04 01:26:03,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:26:04 01:26:03,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:26:04 01:26:03,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:26:04 01:26:03,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:26:04 01:26:03,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:26:04 01:26:03,981 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:26:04 01:26:03,982 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 01:26:04 01:26:03,982 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:26:04 01:26:03,982 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:26:04 01:26:04,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:26:04 01:26:04,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:26:04 01:26:04,243 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:26:04 01:26:04,245 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:26:04 01:26:04,245 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 01:26:04 01:26:04,326 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:26:04 01:26:04,327 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:26:04 01:26:04,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 01:26:04 01:26:04,331 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 01:26:04 01:26:04,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 355 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:26:04 01:26:04 lifecycle.test-compile: 01:26:04 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:26:04 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:26:04 warning: [options] bootstrap class path not set in conjunction with -source 8 01:26:04 warning: [options] source value 8 is obsolete and will be removed in a future release 01:26:04 warning: [options] target value 8 is obsolete and will be removed in a future release 01:26:04 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 01:26:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:06 import omero.grid.RawAccessRequest; 01:26:06 ^ 01:26:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:07 import omero.grid.RawAccessRequest; 01:26:07 ^ 01:26:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:07 import omero.grid.RawAccessRequest; 01:26:07 ^ 01:26:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:07 import omero.model.ImportJob; 01:26:07 ^ 01:26:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:26:07 import omero.model.ImportJobI; 01:26:07 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:26:08 IObject link = (IObject) linkClass.newInstance(); 01:26:08 ^ 01:26:08 where T is a type-variable: 01:26:08 T extends Object declared in class Class 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:26:08 T copy = (T) obj.getClass().newInstance(); 01:26:08 ^ 01:26:08 where T is a type-variable: 01:26:08 T extends Object declared in class Class 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:08 RawAccessRequest raw = new RawAccessRequest(); 01:26:08 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:08 RawAccessRequest raw = new RawAccessRequest(); 01:26:08 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:26:08 raw.repoUuid = legacy.root().getHash().getValue(); 01:26:08 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:26:08 raw.command = "rm"; 01:26:08 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:26:08 raw.args = Arrays.asList(path); 01:26:08 ^ 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:26:08 final IObject link = linkClass.newInstance(); 01:26:08 ^ 01:26:08 where T is a type-variable: 01:26:08 T extends Object declared in class Class 01:26:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:26:08 originalLink.setChild(annotationClass.newInstance()); 01:26:08 ^ 01:26:08 where T is a type-variable: 01:26:08 T extends Object declared in class Class 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:26:09 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:09 final RawAccessRequest request = new RawAccessRequest(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:09 final RawAccessRequest request = new RawAccessRequest(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:26:09 request.repoUuid = repo.root().getHash().getValue(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:26:09 request.command = "exists"; 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:26:09 request.args = Collections.singletonList(dirPath); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:09 final RawAccessRequest request = new RawAccessRequest(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:26:09 final RawAccessRequest request = new RawAccessRequest(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:26:09 request.repoUuid = repo.root().getHash().getValue(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:26:09 request.command = "exists"; 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:26:09 request.args = Collections.singletonList(dirName); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:09 final ImportJob importJob = new ImportJobI(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:26:09 final ImportJob importJob = new ImportJobI(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:26:09 importJob.setImageName(omero.rtypes.rstring(name)); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:26:09 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:09 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:26:09 final String savedName = sent.getImageName().getValue().toString(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:26:09 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:26:09 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:26:09 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:26:09 ^ 01:26:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:26:09 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:26:09 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 RoiResult r = svc.findByImage(image.getId().getValue(), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:26:10 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:26:10 table = svc.getTable(f.getId().getValue()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 RoiResult r = svc.findByImage(image.getId().getValue(), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:26:10 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:26:10 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:26:10 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 01:26:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:26:10 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:26:10 svc.getShapeStatsRestricted( 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:26:10 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:26:10 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:26:10 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:26:10 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:26:10 request.typesToIgnore = Collections.singletonList("Annotation"); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:26:10 request.typesToIgnore = Collections.singletonList("Annotation"); 01:26:10 ^ 01:26:10 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:26:10 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:26:10 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:26:11 p2.setRelatedTo(p1); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:26:11 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:26:11 pixels1.setRelatedTo(pixels2); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:26:11 Pixels pixels = pixels1.getRelatedTo(); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:26:11 Assert.assertNull(pixels1.getRelatedTo()); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:26:11 pixels1.setRelatedTo(pixels2); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:26:11 Pixels pixels = pixels1.getRelatedTo(); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:26:11 Assert.assertNull(pixels1.getRelatedTo()); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:11 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:26:11 ^ 01:26:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:26:11 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:26:11 ^ 01:26:11 Note: Some input files use unchecked or unsafe operations. 01:26:11 Note: Recompile with -Xlint:unchecked for details. 01:26:11 91 warnings 01:26:11 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_872434162.tmp 01:26:11 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:26:11 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:26:11 :: delivering :: omero#OmeroJava-test;working@aa391330d99d :: 5.6.3-614-42a3d638c0-ice36-b7 :: integration :: Sun Jul 12 01:25:54 UTC 2026 01:26:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:26:11 :: publishing :: omero#OmeroJava-test 01:26:11 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-42a3d638c0-ice36-b7.jar 01:26:12 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-42a3d638c0-ice36-b7.xml 01:26:12 01:26:12 build-eclipse: 01:26:12 No sub-builds to iterate on 01:26:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:26:12 01:26:12 retrieve: 01:26:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:26:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:26:17 01:26:17 prepare: 01:26:17 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:26:21 01:26:21 release-clients: 01:26:21 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-42a3d638c0-ice36-b7.zip 01:26:27 01:26:27 release-zip: 01:26:27 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-42a3d638c0-ice36-b7.zip 01:26:39 01:26:39 BUILD SUCCESSFUL 01:26:39 Total time: 3 minutes 17 seconds 01:26:39 ++ '[' -d .git ']' 01:26:39 ++ python3 ./build.py release-src 01:26:39 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:26:40 01:26:40 release-src-git: 01:26:40 Releasing openmicroscopy-5.6.3-614-42a3d638c0-ice36-b7 01:26:42 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-42a3d638c0-ice36-b7.zip 01:26:42 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-42a3d638c0-ice36-b7-base.zip 01:26:43 01:26:43 BUILD SUCCESSFUL 01:26:43 Total time: 4 seconds 01:26:43 ++ echo BUILD_NUMBER=7 01:26:43 ++ echo OMERO_BRANCH=merge_ci 01:26:43 ++ git_info 01:26:43 +++ git rev-parse HEAD 01:26:43 ++ HEAD=42a3d638c0cf4cbcca37f4b6cd038f77947d1c38 01:26:43 ++ git log --max-count=1 42a3d638c0cf4cbcca37f4b6cd038f77947d1c38 01:26:43 ++ env 01:26:43 ++ sort 01:26:43 Archiving artifacts 01:27:00 Finished: SUCCESS