03:08:14 Started by upstream project "Trigger" build number 79 03:08:14 originally caused by: 03:08:14 Started by timer 03:08:14 Running as SYSTEM 03:08:14 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 03:08:14 The recommended git tool is: NONE 03:08:14 No credentials specified 03:08:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 03:08:14 Fetching changes from the remote Git repository 03:08:14 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 03:08:14 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 03:08:14 > git --version # timeout=10 03:08:14 > git --version # 'git version 2.39.3' 03:08:14 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 03:08:18 > git rev-parse origin/merge_ci^{commit} # timeout=10 03:08:18 Checking out Revision 6d87d9debbb9887ee46a7978a767ec6c72838b13 (origin/merge_ci) 03:08:18 > git config core.sparsecheckout # timeout=10 03:08:18 > git checkout -f 6d87d9debbb9887ee46a7978a767ec6c72838b13 # timeout=10 03:08:18 Commit message: "Add version.properties to etc/omero.properties" 03:08:18 > git rev-list --no-walk 408be6aa26e7c698c37d358360abdd1e37f2e601 # timeout=10 03:08:18 Cleaning workspace 03:08:18 > git rev-parse --verify HEAD # timeout=10 03:08:18 Resetting working tree 03:08:18 > git reset --hard # timeout=10 03:08:19 > git clean -fdx # timeout=10 03:08:19 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 69 03:08:19 [OMERO-build] $ /bin/bash -xe /tmp/jenkins8644855834517682662.sh 03:08:19 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 03:08:19 + cd src 03:08:19 + export OMERO_BRANCH=merge_ci 03:08:19 + OMERO_BRANCH=merge_ci 03:08:19 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 03:08:19 + source /home/omero/settings.env 03:08:19 ++ OMERO_DB_HOST=pg 03:08:19 ++ OMERO_DB_USER=postgres 03:08:19 ++ OMERO_DB_PASS= 03:08:19 ++ OMERO_ROOT_PASS=omero 03:08:19 ++ OMERO_DATA_DIR=/OMERO 03:08:19 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 03:08:19 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 03:08:22 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 03:08:24 Collecting zeroc-ice==3.6.5 03:08:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 03:08:27 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 03:08:27 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 03:08:27 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 03:08:27 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1) 03:08:28 Collecting setuptools 03:08:28 Using cached setuptools-70.0.0-py3-none-any.whl (863 kB) 03:08:28 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2) 03:08:28 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 03:08:28 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 03:08:28 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 03:08:28 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 03:08:28 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 03:08:28 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 03:08:28 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 03:08:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 03:08:28 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 03:08:28 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 03:08:28 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 03:08:28 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 03:08:28 Installing collected packages: setuptools 03:08:28 Attempting uninstall: setuptools 03:08:28 Found existing installation: setuptools 69.5.1 03:08:28 Uninstalling setuptools-69.5.1: 03:08:28 Successfully uninstalled setuptools-69.5.1 03:08:29 Successfully installed setuptools-70.0.0 03:08:29 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 03:08:29 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 03:08:29 + source docs/hudson/OMERO.sh 03:08:29 ++ set -e 03:08:29 ++ set -u 03:08:29 ++ set -x 03:08:29 ++ source docs/hudson/functions.sh 03:08:29 ++ echo Building merge_ci 03:08:29 Building merge_ci 03:08:29 ++ python3 ./build.py build-dev release-all 03:08:29 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 03:08:29 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 03:08:29 03:08:29 check-ivy: 03:08:29 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 03:08:29 Created dir: /home/omero/workspace/OMERO-build/src/target 03:08:30 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:08:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:08:31 03:08:31 build-scons: 03:08:31 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 03:08:31 No sub-builds to iterate on 03:08:31 Entering /home/omero/workspace/OMERO-build/src/components/tools... 03:08:31 03:08:31 buildlist: 03:08:31 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:08:31 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:08:31 03:08:31 clean: 03:08:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:08:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:08:31 03:08:31 python-clean: 03:08:31 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 03:08:31 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 03:08:31 warnings.warn( 03:08:31 running clean 03:08:31 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 03:08:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 03:08:32 03:08:32 python-clean: 03:08:32 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 03:08:32 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 03:08:32 warnings.warn( 03:08:32 running clean 03:08:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:08:32 03:08:32 python-clean: 03:08:32 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 03:08:32 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-6d87d9debb-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 03:08:32 warnings.warn( 03:08:32 running clean 03:08:32 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 03:08:32 Deleting directory /home/omero/workspace/OMERO-build/src/target 03:08:32 03:08:32 build-scons: 03:08:32 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 03:08:32 03:08:32 build: 03:08:32 No sub-builds to iterate on 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 03:08:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 03:08:32 03:08:32 tools-init: 03:08:32 no-op 03:08:33 03:08:33 retrieve: 03:08:33 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:08:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:09:28 03:09:28 prepare: 03:09:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 03:09:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 03:09:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 03:09:28 03:09:28 pre-compile: 03:09:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 03:09:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 03:09:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 03:09:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 03:09:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 03:09:28 03:09:28 compile: 03:09:28 no-op 03:09:28 03:09:28 package: 03:09:28 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 03:09:29 03:09:29 install: 03:09:29 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-6d87d9debb-ice36 :: integration :: Wed May 22 03:08:32 UTC 2024 03:09:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 03:09:29 :: publishing :: omero#omero_client 03:09:29 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-6d87d9debb-ice36/omero_client-5.6.3-467-6d87d9debb-ice36.jar 03:09:29 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-6d87d9debb-ice36/omero_client-5.6.3-467-6d87d9debb-ice36.xml 03:09:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:09:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:09:29 03:09:29 retrieve: 03:09:29 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:09:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:09:30 Entering /home/omero/workspace/OMERO-build/src/components/tools... 03:09:30 03:09:30 dist: 03:09:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 03:09:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 03:09:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 03:09:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 03:09:30 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 03:09:30 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 03:09:30 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 03:09:30 Entering /home/omero/workspace/OMERO-build/src/components/tests... 03:09:30 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 03:09:30 03:09:30 copy-licenses: 03:09:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 03:09:30 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 03:09:30 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 03:09:30 03:09:30 copy-history: 03:09:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 03:09:30 03:09:30 copy-etc: 03:09:30 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 03:09:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 03:09:30 03:09:30 copy-sql: 03:09:30 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 03:09:46 03:09:46 copy-server: 03:09:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 03:09:46 03:09:46 copy-client: 03:09:46 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 03:09:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 03:09:48 03:09:48 update-version: 03:09:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 03:09:48 03:09:48 create-workdirs: 03:09:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 03:09:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 03:09:48 03:09:48 copy-luts: 03:09:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 03:09:48 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 03:09:48 03:09:48 test-compile: 03:09:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 03:09:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 03:09:48 03:09:48 testng-init: 03:09:48 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:09:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:09:53 03:09:53,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 03:09:53 03:09:53,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - No custom configurators were discovered as a service. 03:09:53 03:09:53,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 03:09:53 03:09:53,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 03:09:53 03:09:53,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 03:09:53 03:09:53,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 03:09:53 03:09:53,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 03:09:53 03:09:53,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 03:09:53 03:09:53,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 03:09:53 03:09:53,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 03:09:53 03:09:53,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 03:09:53 03:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs multiple times on the classpath. 03:09:53 03:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 03:09:53 03:09:53,298 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 03:09:53 03:09:53,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 03:09:53 03:09:53,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 03:09:53 03:09:53,663 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 03:09:53 03:09:53,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 03:09:53 03:09:53,666 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Please move "immediateFlush" property into the enclosing appender. 03:09:53 03:09:53,770 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Setting the "immediateFlush" property of the enclosing appender to true 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 03:09:53 03:09:53,771 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 03:09:53 03:09:53,773 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@39b266b2 - End of configuration. 03:09:53 03:09:53,778 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5ea7ad41 - Registering current configuration as safe fallback point 03:09:53 03:09:53,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 482 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 03:09:53 03:09:53 lifecycle.test-compile: 03:09:53 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 03:09:53 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 03:09:54 warning: [options] bootstrap class path not set in conjunction with -source 8 03:09:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:09:56 import omero.grid.RawAccessRequest; 03:09:56 ^ 03:09:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:09:56 import omero.grid.RawAccessRequest; 03:09:56 ^ 03:09:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:09:56 import omero.grid.RawAccessRequest; 03:09:56 ^ 03:09:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 03:09:56 import omero.model.ImportJob; 03:09:56 ^ 03:09:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 03:09:56 import omero.model.ImportJobI; 03:09:56 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 03:09:58 IObject link = (IObject) linkClass.newInstance(); 03:09:58 ^ 03:09:58 where T is a type-variable: 03:09:58 T extends Object declared in class Class 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 03:09:58 T copy = (T) obj.getClass().newInstance(); 03:09:58 ^ 03:09:58 where T is a type-variable: 03:09:58 T extends Object declared in class Class 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:09:58 RawAccessRequest raw = new RawAccessRequest(); 03:09:58 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:09:58 RawAccessRequest raw = new RawAccessRequest(); 03:09:58 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 03:09:58 raw.repoUuid = legacy.root().getHash().getValue(); 03:09:58 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 03:09:58 raw.command = "rm"; 03:09:58 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 03:09:58 raw.args = Arrays.asList(path); 03:09:58 ^ 03:09:58 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 03:09:58 final IObject link = linkClass.newInstance(); 03:09:58 ^ 03:09:58 where T is a type-variable: 03:09:58 T extends Object declared in class Class 03:09:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 03:09:59 originalLink.setChild(annotationClass.newInstance()); 03:09:59 ^ 03:09:59 where T is a type-variable: 03:09:59 T extends Object declared in class Class 03:09:59 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 03:09:59 RoiResult r = svc.findByImage(id, new RoiOptions()); 03:09:59 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:10:00 final RawAccessRequest request = new RawAccessRequest(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:10:00 final RawAccessRequest request = new RawAccessRequest(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 03:10:00 request.repoUuid = repo.root().getHash().getValue(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 03:10:00 request.command = "exists"; 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 03:10:00 request.args = Collections.singletonList(dirPath); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:10:00 final RawAccessRequest request = new RawAccessRequest(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 03:10:00 final RawAccessRequest request = new RawAccessRequest(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 03:10:00 request.repoUuid = repo.root().getHash().getValue(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 03:10:00 request.command = "exists"; 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 03:10:00 request.args = Collections.singletonList(dirName); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 03:10:00 final ImportJob importJob = new ImportJobI(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 03:10:00 final ImportJob importJob = new ImportJobI(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 03:10:00 importJob.setImageName(omero.rtypes.rstring(name)); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 03:10:00 importJob.setImageDescription(omero.rtypes.rstring(desc)); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 03:10:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 03:10:00 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 03:10:00 final String savedName = sent.getImageName().getValue().toString(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 03:10:00 final String savedDesc = sent.getImageDescription().getValue().toString(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 03:10:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 03:10:00 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 03:10:00 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 03:10:00 ^ 03:10:00 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 03:10:00 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 03:10:00 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 RoiResult r = svc.findByImage(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 03:10:01 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 03:10:01 table = svc.getTable(f.getId().getValue()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 RoiResult r = svc.findByImage(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 03:10:01 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 03:10:01 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 03:10:01 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 03:10:01 svc.getShapeStatsRestricted( 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 03:10:01 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 03:10:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 03:10:01 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 03:10:01 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 03:10:01 request.typesToIgnore = Collections.singletonList("Annotation"); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 03:10:01 request.typesToIgnore = Collections.singletonList("Annotation"); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 03:10:01 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 03:10:01 p2.setRelatedTo(p1); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 03:10:01 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 03:10:01 pixels1.setRelatedTo(pixels2); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 03:10:01 Pixels pixels = pixels1.getRelatedTo(); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 03:10:01 Assert.assertNull(pixels1.getRelatedTo()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 03:10:01 pixels1.setRelatedTo(pixels2); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 03:10:01 Pixels pixels = pixels1.getRelatedTo(); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 03:10:01 Assert.assertNull(pixels1.getRelatedTo()); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options); 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 03:10:01 ^ 03:10:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 03:10:01 l = svc.getRoiMeasurements(image.getId().getValue(), options); 03:10:01 ^ 03:10:01 Note: Some input files use unchecked or unsafe operations. 03:10:01 Note: Recompile with -Xlint:unchecked for details. 03:10:01 88 warnings 03:10:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1162144154.tmp 03:10:02 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 03:10:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:10:02 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-6d87d9debb-ice36 :: integration :: Wed May 22 03:09:48 UTC 2024 03:10:02 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 03:10:02 :: publishing :: omero#OmeroJava-test 03:10:02 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-6d87d9debb-ice36.jar 03:10:02 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-6d87d9debb-ice36.xml 03:10:02 03:10:02 build-eclipse: 03:10:02 No sub-builds to iterate on 03:10:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 03:10:02 03:10:02 retrieve: 03:10:02 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 03:10:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 03:10:06 03:10:06 prepare: 03:10:06 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 03:10:08 03:10:08 release-clients: 03:10:08 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-6d87d9debb-ice36.zip 03:10:15 03:10:15 release-zip: 03:10:15 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-6d87d9debb-ice36.zip 03:10:29 03:10:29 BUILD SUCCESSFUL 03:10:29 Total time: 2 minutes 0 seconds 03:10:29 ++ '[' -d .git ']' 03:10:29 ++ python3 ./build.py release-src 03:10:29 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 03:10:29 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 03:10:30 03:10:30 release-src-git: 03:10:30 Releasing openmicroscopy-5.6.3-467-6d87d9debb-ice36 03:10:32 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-6d87d9debb-ice36.zip 03:10:32 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-6d87d9debb-ice36-base.zip 03:10:33 03:10:33 BUILD SUCCESSFUL 03:10:33 Total time: 3 seconds 03:10:33 ++ echo BUILD_NUMBER=70 03:10:33 ++ echo OMERO_BRANCH=merge_ci 03:10:33 ++ git_info 03:10:33 +++ git rev-parse HEAD 03:10:33 ++ HEAD=6d87d9debbb9887ee46a7978a767ec6c72838b13 03:10:33 ++ git log --max-count=1 6d87d9debbb9887ee46a7978a767ec6c72838b13 03:10:33 ++ env 03:10:33 ++ sort 03:10:33 Archiving artifacts 03:11:03 Finished: SUCCESS