08:13:48 Started by upstream project "Trigger" build number 95 08:13:48 originally caused by: 08:13:48 Started by user devspace 08:13:48 Running as SYSTEM 08:13:48 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 08:13:48 The recommended git tool is: NONE 08:13:48 No credentials specified 08:13:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 08:13:48 Fetching changes from the remote Git repository 08:13:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 08:13:48 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 08:13:48 > git --version # timeout=10 08:13:48 > git --version # 'git version 2.39.3' 08:13:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:13:53 > git rev-parse origin/merge_ci^{commit} # timeout=10 08:13:53 Checking out Revision db8274c74113d86b67cae1c7360dfec3fc96e100 (origin/merge_ci) 08:13:53 > git config core.sparsecheckout # timeout=10 08:13:53 > git checkout -f db8274c74113d86b67cae1c7360dfec3fc96e100 # timeout=10 08:13:53 Commit message: "Add version.properties to etc/omero.properties" 08:13:53 > git rev-list --no-walk a99039879431cc9cc2bbd46243934ce69620939c # timeout=10 08:13:53 Cleaning workspace 08:13:53 > git rev-parse --verify HEAD # timeout=10 08:13:53 Resetting working tree 08:13:53 > git reset --hard # timeout=10 08:13:53 > git clean -fdx # timeout=10 08:13:53 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 82 08:13:53 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1666601594308213305.sh 08:13:53 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 08:13:53 + cd src 08:13:53 + export OMERO_BRANCH=merge_ci 08:13:53 + OMERO_BRANCH=merge_ci 08:13:53 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 08:13:53 + source /home/omero/settings.env 08:13:53 ++ OMERO_DB_HOST=pg 08:13:53 ++ OMERO_DB_USER=postgres 08:13:53 ++ OMERO_DB_PASS= 08:13:53 ++ OMERO_ROOT_PASS=omero 08:13:53 ++ OMERO_DATA_DIR=/OMERO 08:13:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:13:53 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 08:13:56 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 08:13:57 Collecting zeroc-ice==3.6.5 08:13:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 08:14:00 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 08:14:00 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:14:00 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 08:14:01 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0) 08:14:01 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2) 08:14:01 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 08:14:01 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 08:14:01 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 08:14:01 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 08:14:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 08:14:01 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 08:14:01 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 08:14:01 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 08:14:01 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 08:14:01 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 08:14:01 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 08:14:01 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 08:14:02 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 08:14:02 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:14:02 + source docs/hudson/OMERO.sh 08:14:02 ++ set -e 08:14:02 ++ set -u 08:14:02 ++ set -x 08:14:02 ++ source docs/hudson/functions.sh 08:14:02 ++ echo Building merge_ci 08:14:02 Building merge_ci 08:14:02 ++ python3 ./build.py build-dev release-all 08:14:02 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:14:02 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:14:03 08:14:03 check-ivy: 08:14:03 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 08:14:03 Created dir: /home/omero/workspace/OMERO-build/src/target 08:14:04 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:14:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:14:05 08:14:05 build-scons: 08:14:05 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:14:06 No sub-builds to iterate on 08:14:06 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:14:06 08:14:06 buildlist: 08:14:06 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:14:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:14:06 08:14:06 clean: 08:14:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:14:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:14:07 08:14:07 python-clean: 08:14:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:14:07 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:14:07 warnings.warn( 08:14:07 running clean 08:14:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:14:07 08:14:07 python-clean: 08:14:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:14:07 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:14:07 warnings.warn( 08:14:07 running clean 08:14:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:14:07 08:14:07 python-clean: 08:14:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:14:07 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:14:07 warnings.warn( 08:14:07 running clean 08:14:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:14:07 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:14:07 08:14:07 build-scons: 08:14:07 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:14:07 08:14:07 build: 08:14:07 No sub-builds to iterate on 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:14:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:14:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:14:08 08:14:08 tools-init: 08:14:08 no-op 08:14:08 08:14:08 retrieve: 08:14:08 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:14:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:14:59 08:14:59 prepare: 08:14:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:14:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:14:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:14:59 08:14:59 pre-compile: 08:14:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:14:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:14:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:14:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:14:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:14:59 08:14:59 compile: 08:14:59 no-op 08:14:59 08:14:59 package: 08:14:59 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:15:00 08:15:00 install: 08:15:00 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-469-db8274c741-ice36 :: integration :: Thu Jun 06 08:14:07 UTC 2024 08:15:00 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:15:00 :: publishing :: omero#omero_client 08:15:00 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-db8274c741-ice36/omero_client-5.6.3-469-db8274c741-ice36.jar 08:15:00 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-db8274c741-ice36/omero_client-5.6.3-469-db8274c741-ice36.xml 08:15:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:00 08:15:00 retrieve: 08:15:00 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:15:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:00 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:15:00 08:15:00 dist: 08:15:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:15:00 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:15:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:15:00 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:15:00 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:15:00 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 08:15:00 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:15:00 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:15:01 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:15:01 08:15:01 copy-licenses: 08:15:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:15:01 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:15:01 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:15:01 08:15:01 copy-history: 08:15:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:15:01 08:15:01 copy-etc: 08:15:01 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:15:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:15:02 08:15:02 copy-sql: 08:15:02 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:15:19 08:15:19 copy-server: 08:15:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 08:15:19 08:15:19 copy-client: 08:15:19 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:15:21 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 08:15:21 08:15:21 update-version: 08:15:21 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:15:21 08:15:21 create-workdirs: 08:15:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:15:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:15:21 08:15:21 copy-luts: 08:15:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:15:21 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:15:21 08:15:21 test-compile: 08:15:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:21 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:15:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:15:22 08:15:22 testng-init: 08:15:22 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:15:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:26 08:15:26,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 08:15:26 08:15:26,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service. 08:15:26 08:15:26,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:15:26 08:15:26,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:15:26 08:15:26,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:15:26 08:15:26,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:15:26 08:15:26,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:15:26 08:15:26,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:15:26 08:15:26,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:15:26 08:15:26,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:15:26 08:15:26,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:15:26 08:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath. 08:15:26 08:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:15:26 08:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:15:26 08:15:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:15:26 08:15:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:15:26 08:15:26,400 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:15:26 08:15:26,402 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:15:26 08:15:26,402 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender. 08:15:26 08:15:26,469 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true 08:15:26 08:15:26,469 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:15:26 08:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:15:26 08:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:15:26 08:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:15:26 08:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:15:26 08:15:26,470 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:15:26 08:15:26,471 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration. 08:15:26 08:15:26,473 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point 08:15:26 08:15:26,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:15:26 08:15:26 lifecycle.test-compile: 08:15:26 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:15:26 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:15:26 warning: [options] bootstrap class path not set in conjunction with -source 8 08:15:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:29 import omero.grid.RawAccessRequest; 08:15:29 ^ 08:15:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:30 import omero.grid.RawAccessRequest; 08:15:30 ^ 08:15:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:30 import omero.grid.RawAccessRequest; 08:15:30 ^ 08:15:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:30 import omero.model.ImportJob; 08:15:30 ^ 08:15:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:15:30 import omero.model.ImportJobI; 08:15:30 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:15:31 IObject link = (IObject) linkClass.newInstance(); 08:15:31 ^ 08:15:31 where T is a type-variable: 08:15:31 T extends Object declared in class Class 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:15:31 T copy = (T) obj.getClass().newInstance(); 08:15:31 ^ 08:15:31 where T is a type-variable: 08:15:31 T extends Object declared in class Class 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:31 RawAccessRequest raw = new RawAccessRequest(); 08:15:31 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:31 RawAccessRequest raw = new RawAccessRequest(); 08:15:31 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:15:31 raw.repoUuid = legacy.root().getHash().getValue(); 08:15:31 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:15:31 raw.command = "rm"; 08:15:31 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:15:31 raw.args = Arrays.asList(path); 08:15:31 ^ 08:15:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:15:31 final IObject link = linkClass.newInstance(); 08:15:31 ^ 08:15:31 where T is a type-variable: 08:15:31 T extends Object declared in class Class 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:15:32 originalLink.setChild(annotationClass.newInstance()); 08:15:32 ^ 08:15:32 where T is a type-variable: 08:15:32 T extends Object declared in class Class 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:15:32 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:15:32 ^ 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:32 final RawAccessRequest request = new RawAccessRequest(); 08:15:32 ^ 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:32 final RawAccessRequest request = new RawAccessRequest(); 08:15:32 ^ 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:15:32 request.repoUuid = repo.root().getHash().getValue(); 08:15:32 ^ 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:15:32 request.command = "exists"; 08:15:32 ^ 08:15:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:15:32 request.args = Collections.singletonList(dirPath); 08:15:32 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:33 final RawAccessRequest request = new RawAccessRequest(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:15:33 final RawAccessRequest request = new RawAccessRequest(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:15:33 request.repoUuid = repo.root().getHash().getValue(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:15:33 request.command = "exists"; 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:15:33 request.args = Collections.singletonList(dirName); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:33 final ImportJob importJob = new ImportJobI(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:15:33 final ImportJob importJob = new ImportJobI(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:15:33 importJob.setImageName(omero.rtypes.rstring(name)); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:15:33 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:15:33 final String savedName = sent.getImageName().getValue().toString(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:15:33 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:15:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:15:33 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:15:33 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 RoiResult r = svc.findByImage(image.getId().getValue(), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:15:33 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:15:33 table = svc.getTable(f.getId().getValue()); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 RoiResult r = svc.findByImage(image.getId().getValue(), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:15:33 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:15:33 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:15:33 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:15:33 svc.getShapeStatsRestricted( 08:15:33 ^ 08:15:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:15:33 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:15:33 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:15:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:15:34 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:15:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:15:34 request.typesToIgnore = Collections.singletonList("Annotation"); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:15:34 request.typesToIgnore = Collections.singletonList("Annotation"); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:15:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:15:34 p2.setRelatedTo(p1); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:15:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:15:34 pixels1.setRelatedTo(pixels2); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:15:34 Pixels pixels = pixels1.getRelatedTo(); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:15:34 Assert.assertNull(pixels1.getRelatedTo()); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:15:34 pixels1.setRelatedTo(pixels2); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:15:34 Pixels pixels = pixels1.getRelatedTo(); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:15:34 Assert.assertNull(pixels1.getRelatedTo()); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:15:34 ^ 08:15:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:15:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:15:34 ^ 08:15:34 Note: Some input files use unchecked or unsafe operations. 08:15:34 Note: Recompile with -Xlint:unchecked for details. 08:15:34 88 warnings 08:15:34 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1869087662.tmp 08:15:34 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:15:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:34 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-469-db8274c741-ice36 :: integration :: Thu Jun 06 08:15:22 UTC 2024 08:15:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:15:34 :: publishing :: omero#OmeroJava-test 08:15:34 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-db8274c741-ice36.jar 08:15:34 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-db8274c741-ice36.xml 08:15:34 08:15:34 build-eclipse: 08:15:34 No sub-builds to iterate on 08:15:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:15:35 08:15:35 retrieve: 08:15:35 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 08:15:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:38 08:15:38 prepare: 08:15:38 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:15:40 08:15:40 release-clients: 08:15:40 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-469-db8274c741-ice36.zip 08:15:46 08:15:46 release-zip: 08:15:46 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-469-db8274c741-ice36.zip 08:15:59 08:15:59 BUILD SUCCESSFUL 08:15:59 Total time: 1 minute 56 seconds 08:15:59 ++ '[' -d .git ']' 08:15:59 ++ python3 ./build.py release-src 08:15:59 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:15:59 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:16:00 08:16:00 release-src-git: 08:16:00 Releasing openmicroscopy-5.6.3-469-db8274c741-ice36 08:16:02 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-db8274c741-ice36.zip 08:16:02 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-db8274c741-ice36-base.zip 08:16:03 08:16:03 BUILD SUCCESSFUL 08:16:03 Total time: 4 seconds 08:16:03 ++ echo BUILD_NUMBER=83 08:16:03 ++ echo OMERO_BRANCH=merge_ci 08:16:03 ++ git_info 08:16:03 +++ git rev-parse HEAD 08:16:03 ++ HEAD=db8274c74113d86b67cae1c7360dfec3fc96e100 08:16:03 ++ git log --max-count=1 db8274c74113d86b67cae1c7360dfec3fc96e100 08:16:03 ++ env 08:16:03 ++ sort 08:16:03 Archiving artifacts 08:16:33 Finished: SUCCESS