Started by upstream project "Trigger" build number 60 originally caused by: Started by timer Running as SYSTEM Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 > git rev-parse origin/merge_ci^{commit} # timeout=10 Checking out Revision 740eba00c2c0005399128f8f114e6cfab3d42933 (origin/merge_ci) > git config core.sparsecheckout # timeout=10 > git checkout -f 740eba00c2c0005399128f8f114e6cfab3d42933 # timeout=10 Commit message: "Add version.properties to etc/omero.properties" > git rev-list --no-walk dfda0641cf63081c95961d12a4986319a87e67ad # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 51 [OMERO-build] $ /bin/bash -xe /tmp/jenkins9675291355365088526.sh + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . + cd src + export OMERO_BRANCH=merge_ci + OMERO_BRANCH=merge_ci + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv + source /home/omero/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) WARNING: You are using pip version 21.2.3; however, version 24.0 is available. You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1) Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2) Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) WARNING: You are using pip version 21.2.3; however, version 24.0 is available. You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. + source docs/hudson/OMERO.sh ++ set -e ++ set -u ++ set -x ++ source docs/hudson/functions.sh ++ echo Building merge_ci Building merge_ci ++ python3 ./build.py build-dev release-all OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml check-ivy: Creating /home/omero/workspace/OMERO-build/src/etc/local.properties Created dir: /home/omero/workspace/OMERO-build/src/target :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml build-scons: Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons No sub-builds to iterate on Entering /home/omero/workspace/OMERO-build/src/components/tools... buildlist: :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml clean: Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... python-clean: WARNING: '' not a valid package name; please use only .-separated package names in setup.py /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-460-740eba00c2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running clean Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... python-clean: WARNING: '' not a valid package name; please use only .-separated package names in setup.py /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-460-740eba00c2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running clean Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... python-clean: WARNING: '' not a valid package name; please use only .-separated package names in setup.py /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-460-740eba00c2-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running clean Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py Deleting directory /home/omero/workspace/OMERO-build/src/target build-scons: Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons build: No sub-builds to iterate on Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... tools-init: no-op retrieve: :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release prepare: Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes pre-compile: Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes compile: no-op package: Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar install: :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-460-740eba00c2-ice36 :: integration :: Sat May 04 00:40:36 UTC 2024 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml :: publishing :: omero#omero_client published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-460-740eba00c2-ice36/omero_client-5.6.3-460-740eba00c2-ice36.jar published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-460-740eba00c2-ice36/omero_client-5.6.3-460-740eba00c2-ice36.xml Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... retrieve: :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml Entering /home/omero/workspace/OMERO-build/src/components/tools... dist: Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts Copying 28 files to /home/omero/workspace/OMERO-build/src/dist Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist Entering /home/omero/workspace/OMERO-build/src/components/tests... Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... copy-licenses: Copying 1 file to /home/omero/workspace/OMERO-build/src/dist Created dir: /home/omero/workspace/OMERO-build/src/dist/share Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share copy-history: Copying 1 file to /home/omero/workspace/OMERO-build/src/dist copy-etc: Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates copy-sql: Copying 60 files to /home/omero/workspace/OMERO-build/src/dist copy-server: conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won copy-client: Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won update-version: Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc create-workdirs: Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid Created dir: /home/omero/workspace/OMERO-build/src/dist/var copy-luts: Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts test-compile: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... testng-init: :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:41:15,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 00:41:15,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - No custom configurators were discovered as a service. 00:41:15,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:15,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:41:15,215 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:41:15,216 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:41:15,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:41:15,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:15,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:41:15,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:41:15,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:15,220 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs multiple times on the classpath. 00:41:15,220 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:41:15,220 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:41:15,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:41:15,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:41:15,463 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:41:15,465 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:41:15,465 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Please move "immediateFlush" property into the enclosing appender. 00:41:15,534 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Setting the "immediateFlush" property of the enclosing appender to true 00:41:15,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:41:15,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:41:15,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:41:15,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:41:15,535 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:41:15,535 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:41:15,537 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33ce766b - End of configuration. 00:41:15,539 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5bd8b901 - Registering current configuration as safe fallback point 00:41:15,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 321 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY lifecycle.test-compile: Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes warning: [options] bootstrap class path not set in conjunction with -source 8 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated import omero.grid.RawAccessRequest; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated import omero.grid.RawAccessRequest; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated import omero.grid.RawAccessRequest; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated import omero.model.ImportJob; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated import omero.model.ImportJobI; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated IObject link = (IObject) linkClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated T copy = (T) obj.getClass().newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated RawAccessRequest raw = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated RawAccessRequest raw = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated raw.repoUuid = legacy.root().getHash().getValue(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated raw.command = "rm"; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated raw.args = Arrays.asList(path); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated final IObject link = linkClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated originalLink.setChild(annotationClass.newInstance()); ^ where T is a type-variable: T extends Object declared in class Class /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated RoiResult r = svc.findByImage(id, new RoiOptions()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated final RawAccessRequest request = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated final RawAccessRequest request = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated request.repoUuid = repo.root().getHash().getValue(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated request.command = "exists"; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated request.args = Collections.singletonList(dirPath); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated final RawAccessRequest request = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated final RawAccessRequest request = new RawAccessRequest(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated request.repoUuid = repo.root().getHash().getValue(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated request.command = "exists"; ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated request.args = Collections.singletonList(dirName); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated final ImportJob importJob = new ImportJobI(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated final ImportJob importJob = new ImportJobI(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated importJob.setImageName(omero.rtypes.rstring(name)); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated importJob.setImageDescription(omero.rtypes.rstring(desc)); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated final String savedName = sent.getImageName().getValue().toString(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated final String savedDesc = sent.getImageDescription().getValue().toString(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated RoiResult r = svc.findByImage(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated List l = svc.getRoiMeasurements(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated l = svc.getRoiMeasurements(image.getId().getValue(), options); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated l = svc.getRoiMeasurements(image.getId().getValue(), options); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated List l = svc.getRoiMeasurements(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List,RoiOptions) in IRoiPrx has been deprecated Map values = svc.getMeasuredRoisMap(image.getId() ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated List l = svc.getRoiMeasurements(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated table = svc.getTable(f.getId().getValue()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated RoiResult r = svc.findByImage(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated new ArrayList(), new Integer(0), new Integer(0), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated new ArrayList(), new Integer(0), new Integer(0), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List,int,int,int[]) in IRoiPrx has been deprecated svc.getShapeStatsRestricted( ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List,int,int,int[]) in IRoiPrx has been deprecated final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated request.typesToIgnore = Collections.singletonList("TagAnnotation"); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated request.typesToIgnore = Collections.singletonList("IAnnotationLink"); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated request.typesToIgnore = Collections.singletonList("Annotation"); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated request.typesToIgnore = Collections.singletonList("Annotation"); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated p2.setRelatedTo(p1); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated pixels1.setRelatedTo(pixels2); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated Pixels pixels = pixels1.getRelatedTo(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated Assert.assertNull(pixels1.getRelatedTo()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated pixels1.setRelatedTo(pixels2); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated Pixels pixels = pixels1.getRelatedTo(); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated Assert.assertNull(pixels1.getRelatedTo()); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated List l = svc.getRoiMeasurements(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated l = svc.getRoiMeasurements(image.getId().getValue(), options); ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated List l = svc.getRoiMeasurements(image.getId().getValue(), ^ /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated l = svc.getRoiMeasurements(image.getId().getValue(), options); ^ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 88 warnings Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_248090390.tmp Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-460-740eba00c2-ice36 :: integration :: Sat May 04 00:41:10 UTC 2024 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml :: publishing :: omero#OmeroJava-test published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-460-740eba00c2-ice36.jar published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-460-740eba00c2-ice36.xml build-eclipse: No sub-builds to iterate on Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... retrieve: :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml prepare: Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs release-clients: Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-460-740eba00c2-ice36.zip release-zip: Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-460-740eba00c2-ice36.zip BUILD SUCCESSFUL Total time: 1 minute 17 seconds ++ '[' -d .git ']' ++ python3 ./build.py release-src OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml release-src-git: Releasing openmicroscopy-5.6.3-460-740eba00c2-ice36 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-460-740eba00c2-ice36.zip - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-460-740eba00c2-ice36-base.zip BUILD SUCCESSFUL Total time: 4 seconds ++ echo BUILD_NUMBER=51 ++ echo OMERO_BRANCH=merge_ci ++ git_info +++ git rev-parse HEAD ++ HEAD=740eba00c2c0005399128f8f114e6cfab3d42933 ++ git log --max-count=1 740eba00c2c0005399128f8f114e6cfab3d42933 ++ env ++ sort Archiving artifacts Finished: SUCCESS