23:27:46 Started by upstream project "Trigger" build number 119 23:27:46 originally caused by: 23:27:46 Started by timer 23:27:46 Running as SYSTEM 23:27:46 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 23:27:46 The recommended git tool is: NONE 23:27:46 No credentials specified 23:27:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 23:27:46 Fetching changes from the remote Git repository 23:27:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 23:27:46 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 23:27:46 > git --version # timeout=10 23:27:46 > git --version # 'git version 2.52.0' 23:27:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 23:27:54 > git rev-parse origin/merge_ci^{commit} # timeout=10 23:27:54 Checking out Revision 8601e326c863d1743db9c720d710d6fd2f46ff0a (origin/merge_ci) 23:27:54 > git config core.sparsecheckout # timeout=10 23:27:54 > git checkout -f 8601e326c863d1743db9c720d710d6fd2f46ff0a # timeout=10 23:27:57 Commit message: "Add version.properties to etc/omero.properties" 23:27:57 > git rev-list --no-walk 760e8ed10591478854222e5fa30dfd2524e19dc3 # timeout=10 23:27:57 Cleaning workspace 23:27:57 > git rev-parse --verify HEAD # timeout=10 23:27:57 Resetting working tree 23:27:57 > git reset --hard # timeout=10 23:27:57 > git clean -fdx # timeout=10 23:28:50 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 90 23:28:51 [OMERO-build] $ /bin/bash -xe /tmp/jenkins3030345203131130797.sh 23:28:51 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 23:28:51 + cd src 23:28:51 + export OMERO_BRANCH=merge_ci 23:28:51 + OMERO_BRANCH=merge_ci 23:28:51 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 23:28:51 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 23:29:30 + source /home/omero/settings.env 23:29:30 ++ OMERO_DB_HOST=pg 23:29:30 ++ OMERO_DB_USER=postgres 23:29:30 ++ OMERO_DB_PASS= 23:29:30 ++ OMERO_ROOT_PASS=omero 23:29:30 ++ OMERO_DATA_DIR=/OMERO 23:29:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:29:30 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 23:29:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 23:29:51 Collecting zeroc-ice==3.6.5 23:29:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 23:29:54 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.7 MB/s eta 0:00:00 23:29:54 Installing collected packages: zeroc-ice 23:29:58 Successfully installed zeroc-ice-3.6.5 23:29:58 23:29:58 [notice] A new release of pip available: 22.3.1 -> 26.2.1 23:29:58 [notice] To update, run: python3.11 -m pip install --upgrade pip 23:29:58 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 23:29:59 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 23:29:59 Collecting setuptools<66 23:29:59 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 23:29:59 Collecting omero-py 23:29:59 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 23:30:00 Collecting appdirs 23:30:00 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 23:30:00 Collecting future 23:30:00 Using cached future-1.0.0-py3-none-any.whl (491 kB) 23:30:00 Collecting numpy<3,>=2 23:30:01 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 23:30:01 Collecting Pillow>=10.0.0 23:30:01 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 23:30:02 Collecting PyYAML 23:30:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 23:30:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 23:30:02 Collecting requests 23:30:02 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 23:30:02 Collecting portalocker 23:30:02 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 23:30:02 Collecting charset_normalizer<4,>=2 23:30:03 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) 23:30:03 Collecting idna<4,>=2.5 23:30:03 Using cached idna-3.20-py3-none-any.whl (69 kB) 23:30:03 Collecting urllib3<3,>=1.26 23:30:03 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 23:30:03 Collecting certifi>=2023.5.7 23:30:03 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 23:30:03 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 23:30:04 Attempting uninstall: setuptools 23:30:04 Found existing installation: setuptools 65.5.1 23:30:05 Uninstalling setuptools-65.5.1: 23:30:05 Successfully uninstalled setuptools-65.5.1 23:30:59 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0 23:30:59 23:30:59 [notice] A new release of pip available: 22.3.1 -> 26.2.1 23:30:59 [notice] To update, run: python3.11 -m pip install --upgrade pip 23:30:59 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 23:30:59 ++ deactivate nondestructive 23:30:59 ++ '[' -n '' ']' 23:30:59 ++ '[' -n '' ']' 23:30:59 ++ hash -r 23:30:59 ++ '[' -n '' ']' 23:30:59 ++ unset VIRTUAL_ENV 23:30:59 ++ unset VIRTUAL_ENV_PROMPT 23:30:59 ++ '[' '!' nondestructive = nondestructive ']' 23:30:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 23:30:59 ++ export VIRTUAL_ENV 23:30:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:30:59 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:30:59 ++ export PATH 23:30:59 ++ '[' -n '' ']' 23:30:59 ++ '[' -z '' ']' 23:30:59 ++ _OLD_VIRTUAL_PS1= 23:30:59 ++ PS1='(omero-virtualenv) ' 23:30:59 ++ export PS1 23:30:59 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 23:30:59 ++ export VIRTUAL_ENV_PROMPT 23:30:59 ++ hash -r 23:30:59 + source docs/hudson/OMERO.sh 23:30:59 ++ set -e 23:30:59 ++ set -u 23:30:59 ++ set -x 23:30:59 ++ source docs/hudson/functions.sh 23:30:59 ++ echo Building merge_ci 23:30:59 Building merge_ci 23:30:59 ++ python3 ./build.py build-dev release-all 23:30:59 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 23:31:01 23:31:01 check-ivy: 23:31:01 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 23:31:01 Created dir: /home/omero/workspace/OMERO-build/src/target 23:31:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:31:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:31:02 23:31:02 build-scons: 23:31:02 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 23:31:04 No sub-builds to iterate on 23:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools... 23:31:05 23:31:05 buildlist: 23:31:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:31:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:31:05 23:31:05 clean: 23:31:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:31:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:31:06 23:31:06 python-clean: 23:31:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 23:31:06 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-8601e326c8-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 23:31:06 warnings.warn( 23:31:06 running clean 23:31:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 23:31:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 23:31:07 23:31:07 python-clean: 23:31:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 23:31:07 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-8601e326c8-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 23:31:07 warnings.warn( 23:31:07 running clean 23:31:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 23:31:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 23:31:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:31:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:31:09 23:31:09 python-clean: 23:31:09 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 23:31:09 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-8601e326c8-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 23:31:09 warnings.warn( 23:31:09 running clean 23:31:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 23:31:09 Deleting directory /home/omero/workspace/OMERO-build/src/target 23:31:10 23:31:10 build-scons: 23:31:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 23:31:11 23:31:11 build: 23:31:11 No sub-builds to iterate on 23:31:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:31:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:31:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 23:31:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 23:31:13 23:31:13 tools-init: 23:31:13 no-op 23:31:13 23:31:13 retrieve: 23:31:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:31:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:33:36 23:33:36 prepare: 23:33:36 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 23:33:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 23:33:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 23:33:36 23:33:36 pre-compile: 23:33:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 23:33:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 23:33:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 23:33:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 23:33:50 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 23:33:52 23:33:52 compile: 23:33:52 no-op 23:33:52 23:33:52 package: 23:33:52 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 23:33:56 23:33:56 install: 23:33:56 :: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-8601e326c8-ice36-b100 :: integration :: Sun Oct 04 23:31:12 UTC 2026 23:33:56 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 23:33:56 :: publishing :: omero#omero_client 23:33:56 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-8601e326c8-ice36-b100/omero_client-5.6.3-689-8601e326c8-ice36-b100.jar 23:33:56 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-8601e326c8-ice36-b100/omero_client-5.6.3-689-8601e326c8-ice36-b100.xml 23:33:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:33:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:33:58 23:33:58 retrieve: 23:33:58 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:33:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:33:59 Entering /home/omero/workspace/OMERO-build/src/components/tools... 23:33:59 23:33:59 dist: 23:33:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 23:33:59 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 23:33:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 23:33:59 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 23:33:59 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 23:34:00 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 23:34:00 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 23:34:00 Entering /home/omero/workspace/OMERO-build/src/components/tests... 23:34:01 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 23:34:02 23:34:02 copy-licenses: 23:34:02 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 23:34:02 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 23:34:02 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 23:34:03 23:34:03 copy-history: 23:34:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 23:34:03 23:34:03 copy-etc: 23:34:03 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 23:34:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 23:34:04 23:34:04 copy-sql: 23:34:04 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 23:34:40 23:34:40 copy-server: 23:34:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 23:34:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won 23:34:48 23:34:48 copy-client: 23:34:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 23:34:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 23:34:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won 23:35:00 23:35:00 update-version: 23:35:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 23:35:00 23:35:00 create-workdirs: 23:35:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 23:35:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 23:35:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 23:35:00 23:35:00 copy-luts: 23:35:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 23:35:00 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 23:35:01 23:35:01 test-compile: 23:35:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:35:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 23:35:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:35:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 23:35:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:35:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 23:35:03 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 23:35:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 23:35:04 23:35:04 testng-init: 23:35:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:35:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:35:16 23:35:15,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 23:35:16 23:35:15,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - No custom configurators were discovered as a service. 23:35:16 23:35:15,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 23:35:16 23:35:15,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 23:35:16 23:35:15,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 23:35:16 23:35:15,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 23:35:16 23:35:15,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 23:35:16 23:35:15,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 23:35:16 23:35:15,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 23:35:16 23:35:15,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 23:35:16 23:35:15,858 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 23:35:16 23:35:15,860 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7fdbba5d - Resource [logback.xml] occurs multiple times on the classpath. 23:35:16 23:35:15,860 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7fdbba5d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 23:35:16 23:35:15,860 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7fdbba5d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 23:35:16 23:35:16,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 23:35:16 23:35:16,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 23:35:16 23:35:16,095 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 23:35:16 23:35:16,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6ff36ec8 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 23:35:16 23:35:16,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6ff36ec8 - Please move "immediateFlush" property into the enclosing appender. 23:35:16 23:35:16,160 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6ff36ec8 - Setting the "immediateFlush" property of the enclosing appender to true 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 23:35:16 23:35:16,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 23:35:16 23:35:16,162 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@548666b9 - End of configuration. 23:35:16 23:35:16,164 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@12949ce - Registering current configuration as safe fallback point 23:35:16 23:35:16,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d031f38 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 312 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 23:35:16 23:35:16 lifecycle.test-compile: 23:35:16 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 23:35:16 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 23:35:16 warning: [options] bootstrap class path not set in conjunction with -source 8 23:35:16 warning: [options] source value 8 is obsolete and will be removed in a future release 23:35:16 warning: [options] target value 8 is obsolete and will be removed in a future release 23:35:16 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 23:35:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:19 import omero.grid.RawAccessRequest; 23:35:19 ^ 23:35:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:20 import omero.grid.RawAccessRequest; 23:35:20 ^ 23:35:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:20 import omero.grid.RawAccessRequest; 23:35:20 ^ 23:35:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:20 import omero.model.ImportJob; 23:35:20 ^ 23:35:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 23:35:20 import omero.model.ImportJobI; 23:35:20 ^ 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated 23:35:21 IObject link = (IObject) linkClass.newInstance(); 23:35:21 ^ 23:35:21 where T is a type-variable: 23:35:21 T extends Object declared in class Class 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 23:35:21 T copy = (T) obj.getClass().newInstance(); 23:35:21 ^ 23:35:21 where T is a type-variable: 23:35:21 T extends Object declared in class Class 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:21 RawAccessRequest raw = new RawAccessRequest(); 23:35:21 ^ 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:21 RawAccessRequest raw = new RawAccessRequest(); 23:35:21 ^ 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 23:35:21 raw.repoUuid = legacy.root().getHash().getValue(); 23:35:21 ^ 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 23:35:21 raw.command = "rm"; 23:35:21 ^ 23:35:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 23:35:21 raw.args = Arrays.asList(path); 23:35:21 ^ 23:35:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 23:35:22 final IObject link = linkClass.newInstance(); 23:35:22 ^ 23:35:22 where T is a type-variable: 23:35:22 T extends Object declared in class Class 23:35:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 23:35:22 originalLink.setChild(annotationClass.newInstance()); 23:35:22 ^ 23:35:22 where T is a type-variable: 23:35:22 T extends Object declared in class Class 23:35:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 23:35:22 RoiResult r = svc.findByImage(id, new RoiOptions()); 23:35:22 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:23 final RawAccessRequest request = new RawAccessRequest(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:23 final RawAccessRequest request = new RawAccessRequest(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 23:35:23 request.repoUuid = repo.root().getHash().getValue(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 23:35:23 request.command = "exists"; 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 23:35:23 request.args = Collections.singletonList(dirPath); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:23 final RawAccessRequest request = new RawAccessRequest(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 23:35:23 final RawAccessRequest request = new RawAccessRequest(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 23:35:23 request.repoUuid = repo.root().getHash().getValue(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 23:35:23 request.command = "exists"; 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 23:35:23 request.args = Collections.singletonList(dirName); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 23:35:23 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions()); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:23 final ImportJob importJob = new ImportJobI(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 23:35:23 final ImportJob importJob = new ImportJobI(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 23:35:23 importJob.setImageName(omero.rtypes.rstring(name)); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 23:35:23 importJob.setImageDescription(omero.rtypes.rstring(desc)); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 23:35:23 final String savedName = sent.getImageName().getValue().toString(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 23:35:23 final String savedDesc = sent.getImageDescription().getValue().toString(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 23:35:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 23:35:23 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 23:35:23 ^ 23:35:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 23:35:23 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 23:35:23 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 RoiResult r = svc.findByImage(image.getId().getValue(), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 23:35:24 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 23:35:24 table = svc.getTable(f.getId().getValue()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 RoiResult r = svc.findByImage(image.getId().getValue(), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 23:35:24 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 23:35:24 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 23:35:24 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 23:35:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 23:35:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 23:35:24 svc.getShapeStatsRestricted( 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 23:35:24 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 23:35:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 23:35:24 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 23:35:24 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 23:35:24 request.typesToIgnore = Collections.singletonList("Annotation"); 23:35:24 ^ 23:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 23:35:24 request.typesToIgnore = Collections.singletonList("Annotation"); 23:35:24 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 23:35:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 23:35:25 p2.setRelatedTo(p1); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 23:35:25 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 23:35:25 pixels1.setRelatedTo(pixels2); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 23:35:25 Pixels pixels = pixels1.getRelatedTo(); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 23:35:25 Assert.assertNull(pixels1.getRelatedTo()); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 23:35:25 pixels1.setRelatedTo(pixels2); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 23:35:25 Pixels pixels = pixels1.getRelatedTo(); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 23:35:25 Assert.assertNull(pixels1.getRelatedTo()); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 23:35:25 ^ 23:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 23:35:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 23:35:25 ^ 23:35:25 Note: Some input files use unchecked or unsafe operations. 23:35:25 Note: Recompile with -Xlint:unchecked for details. 23:35:25 92 warnings 23:35:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1603239484.tmp 23:35:25 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 23:35:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:35:26 :: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-8601e326c8-ice36-b100 :: integration :: Sun Oct 04 23:35:03 UTC 2026 23:35:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 23:35:26 :: publishing :: omero#OmeroJava-test 23:35:26 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-8601e326c8-ice36-b100.jar 23:35:26 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-8601e326c8-ice36-b100.xml 23:35:26 23:35:26 build-eclipse: 23:35:26 No sub-builds to iterate on 23:35:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 23:35:27 23:35:27 retrieve: 23:35:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 23:35:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 23:35:32 23:35:32 prepare: 23:35:32 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 23:35:36 23:35:36 release-clients: 23:35:36 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-8601e326c8-ice36-b100.zip 23:35:44 23:35:44 release-zip: 23:35:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-8601e326c8-ice36-b100.zip 23:35:58 23:35:58 BUILD SUCCESSFUL 23:35:58 Total time: 4 minutes 58 seconds 23:35:58 ++ '[' -d .git ']' 23:35:58 ++ python3 ./build.py release-src 23:35:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 23:35:59 23:35:59 release-src-git: 23:35:59 Releasing openmicroscopy-5.6.3-689-8601e326c8-ice36-b100 23:36:01 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-8601e326c8-ice36-b100.zip 23:36:01 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-8601e326c8-ice36-b100-base.zip 23:36:02 23:36:02 BUILD SUCCESSFUL 23:36:02 Total time: 4 seconds 23:36:02 ++ echo BUILD_NUMBER=100 23:36:02 ++ echo OMERO_BRANCH=merge_ci 23:36:02 ++ git_info 23:36:02 +++ git rev-parse HEAD 23:36:02 ++ HEAD=8601e326c863d1743db9c720d710d6fd2f46ff0a 23:36:02 ++ git log --max-count=1 8601e326c863d1743db9c720d710d6fd2f46ff0a 23:36:03 ++ env 23:36:03 ++ sort 23:36:03 Archiving artifacts 23:36:20 Finished: SUCCESS