Started by upstream project "Trigger" build number 56
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor on ‘testintegration’
Running on testintegration in /home/omero/workspace/OMERO-guides-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.39.2'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-guides-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.39.2'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
> git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision 06eaa16a203dcfe3e22546549d40185a79f25ac7 (refs/remotes/origin/master)
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-guides-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-guides.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-guides.git
> git --version # timeout=10
> git --version # 'git version 2.39.3'
> git fetch --tags --force --progress -- https://github.com/ome/omero-guides.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 06eaa16a203dcfe3e22546549d40185a79f25ac7 # timeout=10
Commit message: "Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c"
> git rev-list --no-walk 06eaa16a203dcfe3e22546549d40185a79f25ac7 # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.cellprofiler.url # timeout=10
> git config -f .gitmodules --get submodule.cellprofiler.path # timeout=10
> git config --get submodule.matlab.url # timeout=10
> git config -f .gitmodules --get submodule.matlab.path # timeout=10
> git config --get submodule.qupath.url # timeout=10
> git config -f .gitmodules --get submodule.qupath.path # timeout=10
> git config --get submodule.fiji.url # timeout=10
> git config -f .gitmodules --get submodule.fiji.path # timeout=10
> git config --get submodule.orbit.url # timeout=10
> git config -f .gitmodules --get submodule.orbit.path # timeout=10
> git config --get submodule.r.url # timeout=10
> git config -f .gitmodules --get submodule.r.path # timeout=10
> git config --get submodule.figure.url # timeout=10
> git config -f .gitmodules --get submodule.figure.path # timeout=10
> git config --get submodule.trackmate.url # timeout=10
> git config -f .gitmodules --get submodule.trackmate.path # timeout=10
> git config --get submodule.python.url # timeout=10
> git config -f .gitmodules --get submodule.python.path # timeout=10
> git config --get submodule.parade.url # timeout=10
> git config -f .gitmodules --get submodule.parade.path # timeout=10
> git config --get submodule.fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.fpbioimage.path # timeout=10
> git config --get submodule.iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.iviewer.path # timeout=10
> git config --get submodule.upload.url # timeout=10
> git config -f .gitmodules --get submodule.upload.path # timeout=10
> git config --get submodule.ilastik.url # timeout=10
> git config -f .gitmodules --get submodule.ilastik.path # timeout=10
> git config --get submodule.introduction.url # timeout=10
> git config -f .gitmodules --get submodule.introduction.path # timeout=10
> git config --get submodule.download.url # timeout=10
> git config -f .gitmodules --get submodule.download.path # timeout=10
> git config --get submodule.java.url # timeout=10
> git config -f .gitmodules --get submodule.java.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.mde.url # timeout=10
> git config -f .gitmodules --get submodule.mde.path # timeout=10
> git submodule update --init --recursive cellprofiler # timeout=10
> git submodule update --init --recursive matlab # timeout=10
> git submodule update --init --recursive qupath # timeout=10
> git submodule update --init --recursive fiji # timeout=10
> git submodule update --init --recursive orbit # timeout=10
> git submodule update --init --recursive r # timeout=10
> git submodule update --init --recursive figure # timeout=10
> git submodule update --init --recursive trackmate # timeout=10
> git submodule update --init --recursive python # timeout=10
> git submodule update --init --recursive parade # timeout=10
> git submodule update --init --recursive fpbioimage # timeout=10
> git submodule update --init --recursive iviewer # timeout=10
> git submodule update --init --recursive upload # timeout=10
> git submodule update --init --recursive ilastik # timeout=10
> git submodule update --init --recursive introduction # timeout=10
> git submodule update --init --recursive download # timeout=10
[Pipeline] pwd
[Pipeline] sh
+ mkdir -p build
+ echo build
[Pipeline] sh
+ pushd build
~/workspace/OMERO-guides-push/build ~/workspace/OMERO-guides-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-guides-push
+ python3 -m venv build/venv
> git submodule update --init --recursive java # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive mde # timeout=10
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 21.2.3
Uninstalling pip-21.2.3:
Successfully uninstalled pip-21.2.3
Successfully installed pip-24.0
+ python3 -m pip install scc
Collecting scc
Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.19.1-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.31.0-py3-none-any.whl (62 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.11.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-guides.git
+ BASE_REPO=omero-guides.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-04-30 01:00:58,462 [ scc.config] DEBUG Found github.token
2024-04-30 01:00:58,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-04-30 01:00:58,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:00:59,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:00:59,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-04-30 01:00:59,509 [ scc.gh] DEBUG 2985 remaining from 5000 (Reset at 01:04
2024-04-30 01:00:59,510 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:00:59,516 [ scc.git] DEBUG Check current status
2024-04-30 01:00:59,516 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:00:59,523 [ scc.git] DEBUG 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c
2024-04-30 01:00:59,524 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:00:59,582 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-04-30 01:00:59,593 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-04-30 01:00:59,597 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-04-30 01:00:59,601 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-04-30 01:00:59,612 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-04-30 01:00:59,616 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-04-30 01:00:59,626 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-04-30 01:00:59,635 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-04-30 01:00:59,637 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-04-30 01:00:59,658 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-04-30 01:00:59,669 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-04-30 01:00:59,680 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-04-30 01:00:59,696 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-04-30 01:00:59,699 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f)
2024-04-30 01:00:59,711 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-04-30 01:00:59,715 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-04-30 01:00:59,726 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-04-30 01:00:59,741 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-04-30 01:00:59,749 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-04-30 01:00:59,759 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:00:59,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2024-04-30 01:01:00,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:00,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:01,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:01,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:01,704 [ scc.git] DEBUG Resetting...
2024-04-30 01:01:01,704 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-04-30 01:01:01,714 [ scc.git] DEBUG HEAD is now at 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c
2024-04-30 01:01:01,714 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-04-30 01:01:01,809 [ scc.git] DEBUG Check current status
2024-04-30 01:01:01,809 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:01,814 [ scc.git] DEBUG 06eaa16 Merge pull request #290 from ome/dependabot/submodules/qupath-6db8b1c
2024-04-30 01:01:01,815 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:01,856 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-04-30 01:01:01,865 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-04-30 01:01:01,867 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-04-30 01:01:01,870 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-04-30 01:01:01,879 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-04-30 01:01:01,882 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-04-30 01:01:01,890 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-04-30 01:01:01,898 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-04-30 01:01:01,900 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-04-30 01:01:01,903 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-04-30 01:01:01,911 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-04-30 01:01:01,920 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-04-30 01:01:01,928 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-04-30 01:01:01,931 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f)
2024-04-30 01:01:01,939 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-04-30 01:01:01,942 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-04-30 01:01:01,950 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-04-30 01:01:01,959 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-04-30 01:01:01,962 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-04-30 01:01:01,963 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-04-30 01:01:01,963 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-04-30 01:01:01,964 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-04-30 01:01:01,964 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-04-30 01:01:01,964 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-04-30 01:01:01,964 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:01:02,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2024-04-30 01:01:02,258 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:01:02,258 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:02,258 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:02,263 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:01:02,268 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:01:02,269 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:01:02,274 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:01:02,280 [ scc.git] DEBUG Already up to date.
2024-04-30 01:01:02,281 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:01:02,281 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:02,281 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:02,286 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:01:02,337 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:02,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:02,341 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:01:02,866 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f99157d4460> has no local changes
2024-04-30 01:01:02,866 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:01:02,937 [ scc.git] DEBUG [detached HEAD e026e03] merge master -Dorg -Snone
2024-04-30 01:01:02,937 [ scc.merge] INFO Repository: ome/omero-guides
2024-04-30 01:01:02,937 [ scc.merge] INFO Excluded PRs:
2024-04-30 01:01:02,937 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2024-04-30 01:01:02,937 [ scc.merge] INFO Already up to date.
2024-04-30 01:01:02,937 [ scc.merge] INFO
2024-04-30 01:01:02,937 [ scc.merge] INFO
2024-04-30 01:01:02,938 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-04-30 01:01:02,938 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'cellprofiler'
Synchronizing submodule url for 'download'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'fiji'
Synchronizing submodule url for 'fpbioimage'
Synchronizing submodule url for 'ilastik'
Synchronizing submodule url for 'introduction'
Synchronizing submodule url for 'iviewer'
Synchronizing submodule url for 'java'
Synchronizing submodule url for 'matlab'
Synchronizing submodule url for 'mde'
Synchronizing submodule url for 'orbit'
Synchronizing submodule url for 'parade'
Synchronizing submodule url for 'python'
Synchronizing submodule url for 'qupath'
Synchronizing submodule url for 'r'
Synchronizing submodule url for 'scripts'
Synchronizing submodule url for 'trackmate'
Synchronizing submodule url for 'upload'
Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8'
Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed'
Submodule path 'scripts': checked out 'bb21e02683ea51ea8fd0e2e86b605f694767c36b'
Merge all submodules2024-04-30 01:01:10,975 [ scc.config] DEBUG Found github.token
2024-04-30 01:01:10,979 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-04-30 01:01:11,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:01:11,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:01:12,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-04-30 01:01:12,004 [ scc.gh] DEBUG 2977 remaining from 5000 (Reset at 01:04
2024-04-30 01:01:12,005 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:12,009 [ scc.git] DEBUG Check current status
2024-04-30 01:01:12,009 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:12,014 [ scc.git] DEBUG e026e03 merge master -Dorg -Snone
2024-04-30 01:01:12,015 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:12,064 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-04-30 01:01:12,076 [ scc.git] DEBUG +a27d196bee4a96b586246dc5d94ef07db7c5c0f8 download (heads/master)
2024-04-30 01:01:12,079 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-04-30 01:01:12,083 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-04-30 01:01:12,097 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-04-30 01:01:12,101 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-04-30 01:01:12,111 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-04-30 01:01:12,120 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-04-30 01:01:12,123 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-04-30 01:01:12,126 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-04-30 01:01:12,135 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-04-30 01:01:12,145 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-04-30 01:01:12,155 [ scc.git] DEBUG +908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master)
2024-04-30 01:01:12,158 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f)
2024-04-30 01:01:12,170 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-04-30 01:01:12,173 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-04-30 01:01:12,184 [ scc.git] DEBUG +bb21e02683ea51ea8fd0e2e86b605f694767c36b scripts (heads/master)
2024-04-30 01:01:12,195 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-04-30 01:01:12,199 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-04-30 01:01:12,204 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:12,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2024-04-30 01:01:12,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:13,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:13,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:14,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:14,227 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:14,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-04-30 01:01:14,301 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:14,306 [ scc.git] DEBUG Check current status
2024-04-30 01:01:14,306 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:14,310 [ scc.git] DEBUG 248e8cb Merge pull request #23 from jburel/rtd_build
2024-04-30 01:01:14,311 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:14,357 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:14,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler HTTP/1.1" 200 None
2024-04-30 01:01:15,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:15,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:16,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:16,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:16,439 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:16,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:16,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-04-30 01:01:16,485 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:16,489 [ scc.git] DEBUG Check current status
2024-04-30 01:01:16,490 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:16,494 [ scc.git] DEBUG a27d196 Fix build failure on rtd
2024-04-30 01:01:16,494 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:16,543 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:16,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download HTTP/1.1" 200 None
2024-04-30 01:01:17,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:17,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:18,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:18,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:18,721 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:18,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:18,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-04-30 01:01:18,763 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:18,770 [ scc.git] DEBUG Check current status
2024-04-30 01:01:18,770 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:18,777 [ scc.git] DEBUG 654d43b Merge pull request #16 from jburel/rtd_build
2024-04-30 01:01:18,777 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:18,838 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:19,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure HTTP/1.1" 200 None
2024-04-30 01:01:19,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:20,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:20,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:20,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:20,973 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:21,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:21,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-04-30 01:01:21,016 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:21,020 [ scc.git] DEBUG Check current status
2024-04-30 01:01:21,021 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:21,024 [ scc.git] DEBUG 218b05a Merge pull request #32 from jburel/link
2024-04-30 01:01:21,025 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:21,066 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:21,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji HTTP/1.1" 200 None
2024-04-30 01:01:21,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:22,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:22,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:23,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:23,194 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:23,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:23,237 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-04-30 01:01:23,237 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:23,243 [ scc.git] DEBUG Check current status
2024-04-30 01:01:23,243 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:23,247 [ scc.git] DEBUG 8f4b103 remove sphinx job following migration to rtd
2024-04-30 01:01:23,248 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:23,287 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:23,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage HTTP/1.1" 200 None
2024-04-30 01:01:24,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:24,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:24,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:25,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:25,425 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:25,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:25,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-04-30 01:01:25,474 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:25,479 [ scc.git] DEBUG Check current status
2024-04-30 01:01:25,479 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:25,484 [ scc.git] DEBUG 6789cf7 Remove sphinx badge
2024-04-30 01:01:25,484 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:25,531 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:25,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik HTTP/1.1" 200 None
2024-04-30 01:01:26,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:26,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:27,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:27,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:27,671 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:27,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:27,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-04-30 01:01:27,717 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:27,721 [ scc.git] DEBUG Check current status
2024-04-30 01:01:27,722 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:27,726 [ scc.git] DEBUG d903363 Merge pull request #26 from jburel/rtd_build
2024-04-30 01:01:27,727 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:27,777 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:28,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction HTTP/1.1" 200 None
2024-04-30 01:01:28,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:29,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:29,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:29,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:29,916 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:29,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:29,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-04-30 01:01:29,956 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:29,961 [ scc.git] DEBUG Check current status
2024-04-30 01:01:29,961 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:29,965 [ scc.git] DEBUG 6ed80b3 Merge pull request #13 from jburel/rtd_build
2024-04-30 01:01:29,966 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:30,009 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:30,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer HTTP/1.1" 200 None
2024-04-30 01:01:30,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:31,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:31,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:32,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:32,161 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:32,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:32,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-04-30 01:01:32,216 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:32,223 [ scc.git] DEBUG Check current status
2024-04-30 01:01:32,223 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:32,229 [ scc.git] DEBUG a4b6b55 Remove badge for sphinx
2024-04-30 01:01:32,229 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:32,284 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:32,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java HTTP/1.1" 200 None
2024-04-30 01:01:33,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:33,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:33,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:34,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:34,401 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:34,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:34,445 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-04-30 01:01:34,445 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:34,451 [ scc.git] DEBUG Check current status
2024-04-30 01:01:34,451 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:34,456 [ scc.git] DEBUG ecbd07c Merge pull request #5 from pwalczysko/matlab-online
2024-04-30 01:01:34,456 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:34,504 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:34,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab HTTP/1.1" 200 None
2024-04-30 01:01:35,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:35,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:36,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:36,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:36,671 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:36,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:36,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-04-30 01:01:36,718 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:36,723 [ scc.git] DEBUG Check current status
2024-04-30 01:01:36,723 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:36,729 [ scc.git] DEBUG d43e17f Merge pull request #5 from jburel/rtd_build
2024-04-30 01:01:36,730 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:36,782 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:37,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde HTTP/1.1" 200 None
2024-04-30 01:01:37,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:38,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:38,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:38,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:38,928 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:38,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:38,972 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-04-30 01:01:38,972 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:38,979 [ scc.git] DEBUG Check current status
2024-04-30 01:01:38,980 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:38,986 [ scc.git] DEBUG 4ef1eaa Update actions to v3 and v4
2024-04-30 01:01:38,986 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:39,040 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:39,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit HTTP/1.1" 200 None
2024-04-30 01:01:39,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:40,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:40,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:41,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:41,149 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:41,201 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:41,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-04-30 01:01:41,202 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:41,208 [ scc.git] DEBUG Check current status
2024-04-30 01:01:41,208 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:41,213 [ scc.git] DEBUG 908b335 Merge pull request #1 from ome/rtd_build
2024-04-30 01:01:41,214 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:41,263 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:41,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade HTTP/1.1" 200 None
2024-04-30 01:01:42,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:42,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:42,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:43,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:43,368 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:43,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:43,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-04-30 01:01:43,416 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:43,424 [ scc.git] DEBUG Check current status
2024-04-30 01:01:43,424 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:43,430 [ scc.git] DEBUG e046b1f Merge pull request #57 from jburel/windows
2024-04-30 01:01:43,431 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:43,484 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:43,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python HTTP/1.1" 200 None
2024-04-30 01:01:44,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:44,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:45,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:45,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:45,587 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:45,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:45,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-04-30 01:01:45,629 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:45,634 [ scc.git] DEBUG Check current status
2024-04-30 01:01:45,634 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:45,639 [ scc.git] DEBUG 6db8b1c Merge pull request #11 from jburel/installation
2024-04-30 01:01:45,639 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:45,688 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:46,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath HTTP/1.1" 200 None
2024-04-30 01:01:46,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:47,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:47,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:48,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:48,168 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:48,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:48,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-04-30 01:01:48,213 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:48,218 [ scc.git] DEBUG Check current status
2024-04-30 01:01:48,219 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:48,224 [ scc.git] DEBUG a770a10 Remove sphinx badge
2024-04-30 01:01:48,224 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:48,271 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:48,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r HTTP/1.1" 200 None
2024-04-30 01:01:49,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:49,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:50,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:50,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:50,464 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:50,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:50,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-04-30 01:01:50,514 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:50,520 [ scc.git] DEBUG Check current status
2024-04-30 01:01:50,520 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:50,526 [ scc.git] DEBUG bb21e02 Merge pull request #2 from jburel/rtd_build
2024-04-30 01:01:50,526 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:50,574 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:50,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts HTTP/1.1" 200 None
2024-04-30 01:01:51,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:51,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:52,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:52,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:52,707 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:52,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:52,754 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-04-30 01:01:52,754 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:52,761 [ scc.git] DEBUG Check current status
2024-04-30 01:01:52,761 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:52,767 [ scc.git] DEBUG ffe98a8 Merge pull request #5 from jburel/rtd_build
2024-04-30 01:01:52,767 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:52,820 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:53,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate HTTP/1.1" 200 None
2024-04-30 01:01:53,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:54,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:54,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:54,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:54,939 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:54,989 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:54,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-04-30 01:01:54,990 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-04-30 01:01:54,998 [ scc.git] DEBUG Check current status
2024-04-30 01:01:54,998 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:55,007 [ scc.git] DEBUG 72df341 Merge pull request #17 from jburel/rtd_build
2024-04-30 01:01:55,007 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:55,055 [ scc.config] DEBUG Found remote.origin.url
2024-04-30 01:01:55,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload HTTP/1.1" 200 None
2024-04-30 01:01:55,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-04-30 01:01:56,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-04-30 01:01:56,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-04-30 01:01:57,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-04-30 01:01:57,134 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:01:57,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:01:57,177 [ scc.git] DEBUG Resetting...
2024-04-30 01:01:57,177 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-04-30 01:01:57,202 [ scc.git] DEBUG HEAD is now at e026e03 merge master -Dorg -Snone
2024-04-30 01:01:57,203 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-04-30 01:01:57,259 [ scc.git] DEBUG Submodule path 'download': checked out '4b1b912438f7415faf2d1f618d596968121bcfe8'
2024-04-30 01:01:57,298 [ scc.git] DEBUG Submodule path 'parade': checked out '0875cf1cbb43411bfd5849763da8fe7d2bdafdc0'
2024-04-30 01:01:57,322 [ scc.git] DEBUG Submodule path 'scripts': checked out 'f5038ce4ec273382ea60b19e2432f171ed88375d'
2024-04-30 01:01:57,333 [ scc.git] DEBUG Check current status
2024-04-30 01:01:57,333 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-04-30 01:01:57,339 [ scc.git] DEBUG e026e03 merge master -Dorg -Snone
2024-04-30 01:01:57,339 [ scc.git] DEBUG Calling 'git submodule status'
2024-04-30 01:01:57,386 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-04-30 01:01:57,396 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-04-30 01:01:57,399 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-04-30 01:01:57,402 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-04-30 01:01:57,411 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-04-30 01:01:57,414 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-04-30 01:01:57,425 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-04-30 01:01:57,436 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-04-30 01:01:57,439 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-04-30 01:01:57,442 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-04-30 01:01:57,451 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-04-30 01:01:57,461 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-04-30 01:01:57,472 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-04-30 01:01:57,476 [ scc.git] DEBUG e046b1f99b06b5a029b7b02dd71753d7a4ab262e python (v0.3.0-62-ge046b1f)
2024-04-30 01:01:57,487 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-04-30 01:01:57,490 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-04-30 01:01:57,500 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-04-30 01:01:57,511 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-04-30 01:01:57,514 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-04-30 01:01:57,515 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-04-30 01:01:57,515 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-04-30 01:01:57,516 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-04-30 01:01:57,516 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-04-30 01:01:57,516 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-04-30 01:01:57,516 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2024-04-30 01:01:57,516 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:01:57,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2024-04-30 01:01:57,793 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:01:57,793 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:57,793 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:57,800 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:01:57,805 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:01:57,805 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:01:57,810 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:01:57,815 [ scc.git] DEBUG Already up to date.
2024-04-30 01:01:57,815 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:01:57,815 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:57,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:57,819 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:01:57,872 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:01:57,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:01:57,877 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:01:58,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/pulls HTTP/1.1" 200 None
2024-04-30 01:01:58,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24 HTTP/1.1" 200 None
2024-04-30 01:01:59,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24/comments HTTP/1.1" 200 None
2024-04-30 01:01:59,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-04-30 01:02:00,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:00,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-04-30 01:02:01,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-04-30 01:02:01,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/statuses/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:02,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-04-30 01:02:02,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/status HTTP/1.1" 200 None
2024-04-30 01:02:02,618 [ scc.repo] DEBUG - PR 24 jburel 'Remove binder'
2024-04-30 01:02:02,618 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:02,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-04-30 01:02:02,618 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:02,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:02,624 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:02,630 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:02,631 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:02,637 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:02,644 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:02,645 [ scc.git] DEBUG Calling 'git fetch origin pull/24/head'
2024-04-30 01:02:03,318 [ scc.git] DEBUG From https://github.com/ome/omero-guide-cellprofiler
2024-04-30 01:02:03,318 [ scc.git] DEBUG * branch refs/pull/24/head -> FETCH_HEAD
2024-04-30 01:02:03,323 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:03,323 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:03,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:03,328 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2024-04-30 01:02:03,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:03,353 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 24 (Remove binder) 647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2024-04-30 01:02:03,392 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:03,395 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -------------------------
2024-04-30 01:02:03,395 [ scc.git] DEBUG .github/workflows/build.yml | 27 +++++++++++++++++++++++++++
2024-04-30 01:02:03,395 [ scc.git] DEBUG README.md | 15 ++++++---------
2024-04-30 01:02:03,395 [ scc.git] DEBUG binder/environment.yml | 6 ++++--
2024-04-30 01:02:03,397 [ scc.git] DEBUG 4 files changed, 37 insertions(+), 36 deletions(-)
2024-04-30 01:02:03,397 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2024-04-30 01:02:03,398 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml
2024-04-30 01:02:03,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:03,551 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:03,606 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:03,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:03,615 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:03,656 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:03,662 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd085b39370> has no local changes
2024-04-30 01:02:03,662 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:03,671 [ scc.git] DEBUG [detached HEAD 6a080e5] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:03,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:03,671 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:04,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download/pulls HTTP/1.1" 200 2
2024-04-30 01:02:04,056 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:04,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-04-30 01:02:04,056 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:04,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:04,063 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:04,068 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:04,068 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:04,074 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:04,084 [ scc.git] DEBUG Updating 4b1b912..a27d196
2024-04-30 01:02:04,085 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:04,085 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:04,085 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:04,090 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:04,131 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:04,131 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:04,137 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:04,176 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:04,182 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd086b75fd0> has no local changes
2024-04-30 01:02:04,183 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:04,192 [ scc.git] DEBUG [detached HEAD 8b3b087] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:04,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:04,192 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:04,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/pulls HTTP/1.1" 200 None
2024-04-30 01:02:05,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14 HTTP/1.1" 200 None
2024-04-30 01:02:05,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14/comments HTTP/1.1" 200 None
2024-04-30 01:02:06,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2024-04-30 01:02:06,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:06,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2024-04-30 01:02:07,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/statuses/c2e5919f88d844ffea560784b7a800c655ff0743?per_page=1 HTTP/1.1" 200 2
2024-04-30 01:02:07,376 [ scc.repo] DEBUG - PR 14 will-moore 'Table data by roi'
2024-04-30 01:02:07,376 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:07,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-04-30 01:02:07,376 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:07,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:07,383 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:07,392 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:07,393 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:07,402 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:07,411 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:07,411 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2024-04-30 01:02:07,866 [ scc.git] DEBUG From https://github.com/ome/omero-guide-figure
2024-04-30 01:02:07,866 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2024-04-30 01:02:07,871 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:07,872 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:07,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:07,879 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c2e5919f88d844ffea560784b7a800c655ff0743'
2024-04-30 01:02:07,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:07,893 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Table data by roi) c2e5919f88d844ffea560784b7a800c655ff0743'
2024-04-30 01:02:07,905 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:07,908 [ scc.git] DEBUG docs/omero_figure_scripting.rst | 20 ++++++++++----------
2024-04-30 01:02:07,908 [ scc.git] DEBUG scripts/figure_table_data_shapes.js | 12 ++++++++----
2024-04-30 01:02:07,908 [ scc.git] DEBUG 2 files changed, 18 insertions(+), 14 deletions(-)
2024-04-30 01:02:08,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:08,071 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:08,111 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:08,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:08,119 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:08,164 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:08,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd085b4a2e0> has no local changes
2024-04-30 01:02:08,170 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:08,180 [ scc.git] DEBUG [detached HEAD d6de57d] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:08,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:08,181 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:08,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/pulls HTTP/1.1" 200 None
2024-04-30 01:02:09,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24 HTTP/1.1" 200 None
2024-04-30 01:02:09,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24/comments HTTP/1.1" 200 None
2024-04-30 01:02:09,554 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:09,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-04-30 01:02:09,555 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:09,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:09,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:09,567 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:09,567 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:09,572 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:09,578 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:09,578 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:09,578 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:09,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:09,583 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:09,622 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:09,623 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:09,628 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:09,667 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:09,674 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd086b75e50> has no local changes
2024-04-30 01:02:09,674 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:09,699 [ scc.git] DEBUG [detached HEAD 96ae287] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:09,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:09,699 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:09,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage/pulls HTTP/1.1" 200 2
2024-04-30 01:02:09,992 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:09,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-04-30 01:02:09,992 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:09,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:09,998 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:10,004 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:10,005 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:10,010 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:10,018 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:10,018 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:10,018 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,024 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:10,066 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,066 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,074 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:10,117 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:10,125 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd084ade4f0> has no local changes
2024-04-30 01:02:10,125 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fpbioimage
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:10,135 [ scc.git] DEBUG [detached HEAD d3e0ea6] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:10,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:10,136 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:10,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/pulls HTTP/1.1" 200 2
2024-04-30 01:02:10,429 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:10,429 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-04-30 01:02:10,429 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:10,441 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:10,442 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:10,448 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:10,455 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:10,455 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:10,455 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,461 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:10,507 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,513 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:10,558 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:10,565 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08428b580> has no local changes
2024-04-30 01:02:10,565 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-ilastik
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:10,574 [ scc.git] DEBUG [detached HEAD 48eb510] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:10,575 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:10,575 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:10,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction/pulls HTTP/1.1" 200 2
2024-04-30 01:02:10,860 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:10,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-04-30 01:02:10,860 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,869 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:10,877 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:10,877 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:10,887 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:10,894 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:10,894 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:10,894 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,902 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:10,949 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:10,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:10,957 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:11,007 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:11,016 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08428b700> has no local changes
2024-04-30 01:02:11,016 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-introduction
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:11,028 [ scc.git] DEBUG [detached HEAD 13a7efb] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:11,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:11,029 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:11,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer/pulls HTTP/1.1" 200 2
2024-04-30 01:02:11,303 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:11,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-04-30 01:02:11,304 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:11,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:11,311 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:11,317 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:11,317 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:11,324 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:11,331 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:11,331 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:11,331 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:11,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:11,337 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:11,379 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:11,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:11,386 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:11,430 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:11,437 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd084ae7550> has no local changes
2024-04-30 01:02:11,437 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-iviewer
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:11,445 [ scc.git] DEBUG [detached HEAD 89a883c] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:11,445 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:11,446 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:11,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/pulls HTTP/1.1" 200 None
2024-04-30 01:02:12,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3 HTTP/1.1" 200 None
2024-04-30 01:02:12,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3/comments HTTP/1.1" 200 None
2024-04-30 01:02:13,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2024-04-30 01:02:13,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:14,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-04-30 01:02:14,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2024-04-30 01:02:15,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/statuses/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5?per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:15,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2024-04-30 01:02:15,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/status HTTP/1.1" 200 None
2024-04-30 01:02:15,919 [ scc.repo] DEBUG - PR 3 jburel 'fix build failure on rtd'
2024-04-30 01:02:15,919 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:15,919 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-04-30 01:02:15,919 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:15,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:15,926 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:15,932 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:15,932 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:15,940 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:15,947 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:15,948 [ scc.git] DEBUG Calling 'git fetch origin pull/3/head'
2024-04-30 01:02:16,329 [ scc.git] DEBUG From https://github.com/ome/omero-guide-java
2024-04-30 01:02:16,330 [ scc.git] DEBUG * branch refs/pull/3/head -> FETCH_HEAD
2024-04-30 01:02:16,336 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:16,337 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:16,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:16,344 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2024-04-30 01:02:16,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:16,356 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 3 (fix build failure on rtd) 31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2024-04-30 01:02:16,384 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:16,387 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2024-04-30 01:02:16,387 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2024-04-30 01:02:16,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:16,542 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:16,583 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:16,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:16,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:16,627 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:16,634 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08428b910> has no local changes
2024-04-30 01:02:16,634 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:16,643 [ scc.git] DEBUG [detached HEAD e0781fd] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:16,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:16,644 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:17,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab/pulls HTTP/1.1" 200 2
2024-04-30 01:02:17,023 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:17,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-04-30 01:02:17,024 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:17,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:17,029 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:17,034 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:17,034 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:17,039 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:17,044 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:17,045 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:17,045 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:17,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:17,049 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:17,087 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:17,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:17,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:17,143 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:17,153 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08428b5e0> has no local changes
2024-04-30 01:02:17,154 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-matlab
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:17,163 [ scc.git] DEBUG [detached HEAD df94083] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:17,163 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:17,164 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:17,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/pulls HTTP/1.1" 200 None
2024-04-30 01:02:18,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4 HTTP/1.1" 200 None
2024-04-30 01:02:18,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4/comments HTTP/1.1" 200 None
2024-04-30 01:02:18,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2024-04-30 01:02:19,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:19,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2024-04-30 01:02:20,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/statuses/4b6e2511fe820a323b2311e2b39910b6b79fcf6a?per_page=1 HTTP/1.1" 200 2
2024-04-30 01:02:20,282 [ scc.repo] DEBUG - PR 4 pwalczysko 'Remove relative reference when it does not work'
2024-04-30 01:02:20,283 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:20,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-04-30 01:02:20,283 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:20,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:20,296 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:20,302 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:20,303 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:20,310 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:20,316 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:20,316 [ scc.git] DEBUG Calling 'git fetch origin pull/4/head'
2024-04-30 01:02:20,729 [ scc.git] DEBUG From https://github.com/ome/omero-guide-mde
2024-04-30 01:02:20,730 [ scc.git] DEBUG * branch refs/pull/4/head -> FETCH_HEAD
2024-04-30 01:02:20,735 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:20,735 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:20,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:20,741 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2024-04-30 01:02:20,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:20,752 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 4 (Remove relative reference when it does not work) 4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2024-04-30 01:02:20,762 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:20,764 [ scc.git] DEBUG docs/mde_customizeObjects.rst | 4 ++--
2024-04-30 01:02:20,764 [ scc.git] DEBUG docs/mde_customizeView.rst | 4 ++--
2024-04-30 01:02:20,764 [ scc.git] DEBUG 2 files changed, 4 insertions(+), 4 deletions(-)
2024-04-30 01:02:20,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:20,935 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:20,975 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:20,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:20,981 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:21,019 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:21,025 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08425f2b0> has no local changes
2024-04-30 01:02:21,026 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:21,034 [ scc.git] DEBUG [detached HEAD 0dfb199] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:21,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:21,034 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:21,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit/pulls HTTP/1.1" 200 2
2024-04-30 01:02:21,378 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:21,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-04-30 01:02:21,378 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:21,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:21,384 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:21,390 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:21,390 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:21,396 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:21,404 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:21,404 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:21,404 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:21,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:21,410 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:21,454 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:21,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:21,461 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:21,503 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:21,512 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd084adcfa0> has no local changes
2024-04-30 01:02:21,512 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-orbit
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:21,522 [ scc.git] DEBUG [detached HEAD b4bf1b5] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:21,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:21,523 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:21,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls HTTP/1.1" 200 2
2024-04-30 01:02:21,810 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:21,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-04-30 01:02:21,810 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:21,810 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:21,817 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:21,822 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:21,823 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:21,828 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:21,838 [ scc.git] DEBUG Updating 0875cf1..908b335
2024-04-30 01:02:22,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls/1 HTTP/1.1" 200 None
2024-04-30 01:02:22,463 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:22,463 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:22,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:22,469 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:22,507 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:22,507 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:22,512 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:22,552 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:22,558 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd084271490> has no local changes
2024-04-30 01:02:22,558 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:22,566 [ scc.git] DEBUG [detached HEAD bd07732] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:22,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:22,567 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:22,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/pulls HTTP/1.1" 200 None
2024-04-30 01:02:23,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/issues/61 HTTP/1.1" 200 None
2024-04-30 01:02:23,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/issues/61/comments HTTP/1.1" 200 None
2024-04-30 01:02:24,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7 HTTP/1.1" 200 None
2024-04-30 01:02:24,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:25,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-04-30 01:02:25,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7 HTTP/1.1" 200 None
2024-04-30 01:02:26,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/statuses/081069799954e0a2c2117b9da97d87bd1ab840f7?per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:26,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7 HTTP/1.1" 200 None
2024-04-30 01:02:27,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/commits/081069799954e0a2c2117b9da97d87bd1ab840f7/status HTTP/1.1" 200 None
2024-04-30 01:02:27,199 [ scc.repo] DEBUG - PR 61 jburel 'Update'
2024-04-30 01:02:27,199 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:27,199 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-04-30 01:02:27,199 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:27,199 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:27,205 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:27,211 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:27,211 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:27,217 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:27,225 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:27,225 [ scc.git] DEBUG Calling 'git fetch origin pull/61/head'
2024-04-30 01:02:27,609 [ scc.git] DEBUG From https://github.com/ome/omero-guide-python
2024-04-30 01:02:27,609 [ scc.git] DEBUG * branch refs/pull/61/head -> FETCH_HEAD
2024-04-30 01:02:27,614 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:27,614 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:27,615 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:27,620 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...081069799954e0a2c2117b9da97d87bd1ab840f7'
2024-04-30 01:02:27,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:27,630 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 61 (Update) 081069799954e0a2c2117b9da97d87bd1ab840f7'
2024-04-30 01:02:27,731 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:27,783 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -
2024-04-30 01:02:27,783 [ scc.git] DEBUG .github/workflows/build.yml | 6 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG README.md | 51 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG binder/environment.yml | 30 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG docs/setup.rst | 8 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/CalculateSharpnessOneImage.ipynb | 166 ++-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/IlluminationCorrectionNotebook.ipynb | 102 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/OMEROHelloWorld.ipynb | 90 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/SimpleFRAP.ipynb | 131 ++-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/Solution_Exercises.ipynb | 90 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/idr0021_segmentation.ipynb | 559 +--------
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/idr0044_zarr_segmentation_parallel.ipynb | 47 +-
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/idr0062_prediction.ipynb | 323 ++----
2024-04-30 01:02:27,783 [ scc.git] DEBUG notebooks/idr0062_prediction_save.ipynb | 264 ++---
2024-04-30 01:02:27,784 [ scc.git] DEBUG notebooks/idr0062_prediction_zarr_public_s3.ipynb | 362 ++++--
2024-04-30 01:02:27,784 [ scc.git] DEBUG notebooks/plot.png | Bin 0 -> 20698 bytes
2024-04-30 01:02:27,784 [ scc.git] DEBUG notebooks/zarr-public-s3-multiscale.ipynb | 1192 ++++++++------------
2024-04-30 01:02:27,784 [ scc.git] DEBUG scripts/idr0062_prediction.py | 76 +-
2024-04-30 01:02:27,784 [ scc.git] DEBUG scripts/idr0062_prediction_save.py | 88 +-
2024-04-30 01:02:27,784 [ scc.git] DEBUG 19 files changed, 1567 insertions(+), 2043 deletions(-)
2024-04-30 01:02:27,784 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2024-04-30 01:02:27,784 [ scc.git] DEBUG create mode 100644 notebooks/plot.png
2024-04-30 01:02:27,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:27,948 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:27,987 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:27,987 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:27,993 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:28,031 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:28,062 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08422fac0> has no local changes
2024-04-30 01:02:28,062 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-python
Already up to date.
Merged PRs:
- PR 61 jburel 'Update'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:28,071 [ scc.git] DEBUG [detached HEAD 3c6a9e8] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:28,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:28,072 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:28,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath/pulls HTTP/1.1" 200 2
2024-04-30 01:02:28,412 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:28,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-04-30 01:02:28,413 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:28,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:28,418 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:28,423 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:28,423 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:28,429 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:28,435 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:28,435 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:28,435 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:28,435 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:28,440 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:28,478 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:28,478 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:28,483 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:28,521 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:28,527 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08424b610> has no local changes
2024-04-30 01:02:28,527 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-qupath
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:28,535 [ scc.git] DEBUG [detached HEAD 8a405f4] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:28,535 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:28,536 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:28,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/pulls HTTP/1.1" 200 None
2024-04-30 01:02:29,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11 HTTP/1.1" 200 None
2024-04-30 01:02:29,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11/comments HTTP/1.1" 200 None
2024-04-30 01:02:30,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2024-04-30 01:02:30,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:31,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-04-30 01:02:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2024-04-30 01:02:32,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/statuses/990828ddac8bc276820c2fa5952182f56b0ab241?per_page=1 HTTP/1.1" 200 None
2024-04-30 01:02:32,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2024-04-30 01:02:33,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/status HTTP/1.1" 200 None
2024-04-30 01:02:33,116 [ scc.repo] DEBUG - PR 11 jburel 'fix build failure on rtd'
2024-04-30 01:02:33,116 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:33,116 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-04-30 01:02:33,117 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:33,117 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:33,123 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:33,127 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:33,127 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:33,132 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:33,138 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:33,138 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head'
2024-04-30 01:02:33,515 [ scc.git] DEBUG From https://github.com/ome/omero-guide-r
2024-04-30 01:02:33,515 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD
2024-04-30 01:02:33,519 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:33,519 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:33,519 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:33,525 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...990828ddac8bc276820c2fa5952182f56b0ab241'
2024-04-30 01:02:33,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:33,538 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 11 (fix build failure on rtd) 990828ddac8bc276820c2fa5952182f56b0ab241'
2024-04-30 01:02:33,551 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-04-30 01:02:33,554 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2024-04-30 01:02:33,554 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2024-04-30 01:02:33,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:33,721 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:33,765 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:33,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:33,770 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:33,812 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:33,819 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd0841db490> has no local changes
2024-04-30 01:02:33,819 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:33,828 [ scc.git] DEBUG [detached HEAD e3f39ae] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:33,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:33,829 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:34,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls HTTP/1.1" 200 2
2024-04-30 01:02:34,151 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:34,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-04-30 01:02:34,151 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:34,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:34,158 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:34,164 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:34,164 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:34,170 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:34,180 [ scc.git] DEBUG Updating f5038ce..bb21e02
2024-04-30 01:02:34,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls/2 HTTP/1.1" 200 None
2024-04-30 01:02:34,815 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:34,815 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:34,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:34,821 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:34,860 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:34,861 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:34,865 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:34,904 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:34,910 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd084217f40> has no local changes
2024-04-30 01:02:34,910 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-scripts
Updating f5038ce..bb21e02
Previously merged:
- PR 2 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:34,920 [ scc.git] DEBUG [detached HEAD cec9a8a] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:34,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:34,921 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:35,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate/pulls HTTP/1.1" 200 2
2024-04-30 01:02:35,244 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:35,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-04-30 01:02:35,244 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,244 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:35,254 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:35,254 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:35,259 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:35,265 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:35,265 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:35,266 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,270 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:35,309 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,316 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:35,354 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:35,361 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd0841ef640> has no local changes
2024-04-30 01:02:35,361 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-trackmate
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:35,369 [ scc.git] DEBUG [detached HEAD 59665ee] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:35,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:35,370 [ scc.repo] DEBUG ## PRs found:
2024-04-30 01:02:35,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload/pulls HTTP/1.1" 200 2
2024-04-30 01:02:35,674 [ scc.repo] DEBUG ## Branches found:
2024-04-30 01:02:35,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-04-30 01:02:35,674 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,680 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-04-30 01:02:35,685 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-04-30 01:02:35,686 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-04-30 01:02:35,692 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-04-30 01:02:35,698 [ scc.git] DEBUG Already up to date.
2024-04-30 01:02:35,698 [ scc.git] DEBUG ## Unique users: []
2024-04-30 01:02:35,698 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,698 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,703 [ scc.git] DEBUG Calling 'git submodule update'
2024-04-30 01:02:35,748 [ scc.git] DEBUG Get sha1 of %s
2024-04-30 01:02:35,748 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-04-30 01:02:35,754 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:35,805 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:35,813 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd08420ebe0> has no local changes
2024-04-30 01:02:35,813 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:35,823 [ scc.git] DEBUG [detached HEAD ebbe5b3] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:35,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:35,823 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-04-30 01:02:35,901 [ scc.config] DEBUG Found submodule.cellprofiler.url
2024-04-30 01:02:36,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:36,104 [ scc.config] DEBUG Found submodule.download.url
2024-04-30 01:02:36,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:36,516 [ scc.config] DEBUG Found submodule.figure.url
2024-04-30 01:02:36,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:36,944 [ scc.config] DEBUG Found submodule.fiji.url
2024-04-30 01:02:37,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:37,388 [ scc.config] DEBUG Found submodule.fpbioimage.url
2024-04-30 01:02:37,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:37,807 [ scc.config] DEBUG Found submodule.ilastik.url
2024-04-30 01:02:38,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:38,206 [ scc.config] DEBUG Found submodule.introduction.url
2024-04-30 01:02:38,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:38,623 [ scc.config] DEBUG Found submodule.iviewer.url
2024-04-30 01:02:39,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:39,032 [ scc.config] DEBUG Found submodule.java.url
2024-04-30 01:02:39,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:39,429 [ scc.config] DEBUG Found submodule.matlab.url
2024-04-30 01:02:39,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:39,830 [ scc.config] DEBUG Found submodule.mde.url
2024-04-30 01:02:40,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:40,247 [ scc.config] DEBUG Found submodule.orbit.url
2024-04-30 01:02:40,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:40,656 [ scc.config] DEBUG Found submodule.parade.url
2024-04-30 01:02:41,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:41,072 [ scc.config] DEBUG Found submodule.python.url
2024-04-30 01:02:41,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:41,476 [ scc.config] DEBUG Found submodule.qupath.url
2024-04-30 01:02:41,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:41,901 [ scc.config] DEBUG Found submodule.r.url
2024-04-30 01:02:42,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:42,307 [ scc.config] DEBUG Found submodule.scripts.url
2024-04-30 01:02:42,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:42,719 [ scc.config] DEBUG Found submodule.trackmate.url
2024-04-30 01:02:43,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:43,136 [ scc.config] DEBUG Found submodule.upload.url
2024-04-30 01:02:43,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-04-30 01:02:43,543 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-04-30 01:02:43,606 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd088fad460> has local changes
2024-04-30 01:02:43,606 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Repository: ome/omero-guide-fpbioimage
Already up to date.
Repository: ome/omero-guide-ilastik
Already up to date.
Repository: ome/omero-guide-introduction
Already up to date.
Repository: ome/omero-guide-iviewer
Already up to date.
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-matlab
Already up to date.
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Repository: ome/omero-guide-orbit
Already up to date.
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-python
Already up to date.
Merged PRs:
- PR 61 jburel 'Update'
Repository: ome/omero-guide-qupath
Already up to date.
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-scripts
Updating f5038ce..bb21e02
Previously merged:
- PR 2 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-trackmate
Already up to date.
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#45 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/45/)'
2024-04-30 01:02:43,625 [ scc.git] DEBUG [detached HEAD be0c628] merge master -Dorg -Ssuccess-only
2024-04-30 01:02:43,625 [ scc.git] DEBUG 20 files changed, 38 insertions(+), 38 deletions(-)
2024-04-30 01:02:43,627 [ scc.merge] INFO Repository: ome/omero-guides
2024-04-30 01:02:43,628 [ scc.merge] INFO Excluded PRs:
2024-04-30 01:02:43,628 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2024-04-30 01:02:43,628 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,628 [ scc.merge] INFO
2024-04-30 01:02:43,628 [ scc.merge] INFO
2024-04-30 01:02:43,628 [ scc.merge] INFO Repository: ome/omero-guide-cellprofiler
2024-04-30 01:02:43,628 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,628 [ scc.merge] INFO
2024-04-30 01:02:43,628 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,628 [ scc.merge] INFO - PR 24 jburel 'Remove binder'
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO Repository: ome/omero-guide-download
2024-04-30 01:02:43,629 [ scc.merge] INFO Updating 4b1b912..a27d196
2024-04-30 01:02:43,629 [ scc.merge] INFO Previously merged:
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO Repository: ome/omero-guide-figure
2024-04-30 01:02:43,629 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,629 [ scc.merge] INFO - PR 14 will-moore 'Table data by roi'
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO Repository: ome/omero-guide-fiji
2024-04-30 01:02:43,629 [ scc.merge] INFO Excluded PRs:
2024-04-30 01:02:43,629 [ scc.merge] INFO - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
2024-04-30 01:02:43,629 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,629 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO Repository: ome/omero-guide-fpbioimage
2024-04-30 01:02:43,630 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO Repository: ome/omero-guide-ilastik
2024-04-30 01:02:43,630 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO Repository: ome/omero-guide-introduction
2024-04-30 01:02:43,630 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO Repository: ome/omero-guide-iviewer
2024-04-30 01:02:43,630 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,630 [ scc.merge] INFO Repository: ome/omero-guide-java
2024-04-30 01:02:43,630 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,630 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,631 [ scc.merge] INFO - PR 3 jburel 'fix build failure on rtd'
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO Repository: ome/omero-guide-matlab
2024-04-30 01:02:43,631 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO Repository: ome/omero-guide-mde
2024-04-30 01:02:43,631 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,631 [ scc.merge] INFO - PR 4 pwalczysko 'Remove relative reference when it does not work'
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO Repository: ome/omero-guide-orbit
2024-04-30 01:02:43,631 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,631 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO Repository: ome/omero-guide-parade
2024-04-30 01:02:43,632 [ scc.merge] INFO Updating 0875cf1..908b335
2024-04-30 01:02:43,632 [ scc.merge] INFO Previously merged:
2024-04-30 01:02:43,632 [ scc.merge] INFO - PR 1 jburel 'fix build failure on rtd'
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO Repository: ome/omero-guide-python
2024-04-30 01:02:43,632 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,632 [ scc.merge] INFO - PR 61 jburel 'Update'
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO Repository: ome/omero-guide-qupath
2024-04-30 01:02:43,632 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO
2024-04-30 01:02:43,632 [ scc.merge] INFO Repository: ome/omero-guide-r
2024-04-30 01:02:43,632 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO Merged PRs:
2024-04-30 01:02:43,633 [ scc.merge] INFO - PR 11 jburel 'fix build failure on rtd'
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO Repository: ome/omero-guide-scripts
2024-04-30 01:02:43,633 [ scc.merge] INFO Updating f5038ce..bb21e02
2024-04-30 01:02:43,633 [ scc.merge] INFO Previously merged:
2024-04-30 01:02:43,633 [ scc.merge] INFO - PR 2 jburel 'fix build failure on rtd'
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO Repository: ome/omero-guide-trackmate
2024-04-30 01:02:43,633 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO Repository: ome/omero-guide-upload
2024-04-30 01:02:43,633 [ scc.merge] INFO Already up to date.
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,633 [ scc.merge] INFO
2024-04-30 01:02:43,634 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-04-30 01:02:43,634 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-04-30 01:02:43,642 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-04-30 01:02:43,647 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-04-30 01:02:43,653 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-04-30 01:02:43,658 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-04-30 01:02:43,663 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-04-30 01:02:43,668 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-04-30 01:02:43,672 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-04-30 01:02:43,677 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-04-30 01:02:43,682 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-04-30 01:02:43,687 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,692 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,692 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-04-30 01:02:43,692 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-04-30 01:02:43,698 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-04-30 01:02:43,703 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-04-30 01:02:43,708 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-04-30 01:02:43,713 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-04-30 01:02:43,718 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,722 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,722 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-04-30 01:02:43,722 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-04-30 01:02:43,727 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-04-30 01:02:43,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-04-30 01:02:43,732 [ scc.git] DEBUG Calling 'git remote'
2024-04-30 01:02:43,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
Update component versions
python3: can't open file '/home/omero/workspace/OMERO-guides-push/cellprofiler/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/cellprofiler/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/download/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/download/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/figure/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/figure/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/fiji/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/fiji/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/fpbioimage/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/fpbioimage/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/ilastik/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/ilastik/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/introduction/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/introduction/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/iviewer/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/iviewer/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/java/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/java/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/matlab/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/matlab/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/mde/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/mde/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/orbit/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/orbit/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/python/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/python/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/r/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/r/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/scripts/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/scripts/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/trackmate/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/trackmate/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/upload/setup.py': [Errno 2] No such file or directory
python3: can't open file '/home/omero/workspace/OMERO-guides-push/upload/setup.py': [Errno 2] No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'cellprofiler'
Entering 'download'
Entering 'figure'
Entering 'fiji'
Entering 'fpbioimage'
Entering 'ilastik'
Entering 'introduction'
Entering 'iviewer'
Entering 'java'
Entering 'matlab'
Entering 'mde'
Entering 'orbit'
Entering 'parade'
Entering 'python'
Entering 'qupath'
Entering 'r'
Entering 'scripts'
Entering 'trackmate'
Entering 'upload'
Entering 'cellprofiler'
HEAD detached from 248e8cb
nothing to commit, working tree clean
Entering 'download'
HEAD detached from 4b1b912
nothing to commit, working tree clean
Entering 'figure'
HEAD detached from 654d43b
nothing to commit, working tree clean
Entering 'fiji'
HEAD detached from 218b05a
nothing to commit, working tree clean
Entering 'fpbioimage'
HEAD detached from 8f4b103
nothing to commit, working tree clean
Entering 'ilastik'
HEAD detached from 6789cf7
nothing to commit, working tree clean
Entering 'introduction'
HEAD detached from d903363
nothing to commit, working tree clean
Entering 'iviewer'
HEAD detached from 6ed80b3
nothing to commit, working tree clean
Entering 'java'
HEAD detached from a4b6b55
nothing to commit, working tree clean
Entering 'matlab'
HEAD detached from ecbd07c
nothing to commit, working tree clean
Entering 'mde'
HEAD detached from d43e17f
nothing to commit, working tree clean
Entering 'orbit'
HEAD detached from 4ef1eaa
nothing to commit, working tree clean
Entering 'parade'
HEAD detached from 0875cf1
nothing to commit, working tree clean
Entering 'python'
HEAD detached from e046b1f
nothing to commit, working tree clean
Entering 'qupath'
HEAD detached from 6db8b1c
nothing to commit, working tree clean
Entering 'r'
HEAD detached from a770a10
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from f5038ce
nothing to commit, working tree clean
Entering 'trackmate'
HEAD detached from ffe98a8
nothing to commit, working tree clean
Entering 'upload'
HEAD detached from 72df341
nothing to commit, working tree clean
HEAD detached from 06eaa16
nothing to commit, working tree clean
2024-04-30 01:04:10,815 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-guides/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS