Started by upstream project "Trigger" build number 33
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor on ‘testintegration’
Running on testintegration in /home/omero/workspace/OMERO-insight-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-insight-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
Commit message: "Merge pull request #18 from jburel/python_311"
> git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision 6aa281a7e36782dd3d5508bfe879659b5db953e1 (refs/remotes/origin/master)
Commit message: "Merge pull request #470 from dominikl/bump_add_repo"
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-insight-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-insight.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-insight.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --tags --force --progress -- https://github.com/ome/omero-insight.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 6aa281a7e36782dd3d5508bfe879659b5db953e1 # timeout=10
> git rev-list --no-walk 6aa281a7e36782dd3d5508bfe879659b5db953e1 # timeout=10
Cleaning workspace
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 15
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
[Pipeline] sh
+ pushd build
~/workspace/OMERO-insight-push/build ~/workspace/OMERO-insight-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-insight-push
+ python3.11 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ python3.11 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
Using cached pip-25.3-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.3.1
Uninstalling pip-22.3.1:
Successfully uninstalled pip-22.3.1
Successfully installed pip-25.3
+ python3.11 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached pygithub-2.8.1-py3-none-any.whl (432 kB)
Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB)
Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB)
Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
Using cached requests-2.32.5-py3-none-any.whl (64 kB)
Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
Using cached idna-3.11-py3-none-any.whl (71 kB)
Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached pycparser-2.23-py3-none-any.whl (118 kB)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.1.4 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-insight.git
+ BASE_REPO=omero-insight.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-insight-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-insight-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-insight-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-01-10 00:52:09,342 [ scc.config] DEBUG Found github.token
2026-01-10 00:52:09,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-01-10 00:52:09,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:09,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:10,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-01-10 00:52:10,341 [ scc.gh] DEBUG 3186 remaining from 5000 (Reset at 01:01
2026-01-10 00:52:10,341 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-01-10 00:52:10,344 [ scc.git] DEBUG Check current status
2026-01-10 00:52:10,344 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-01-10 00:52:10,346 [ scc.git] DEBUG 6aa281a7e Merge pull request #470 from dominikl/bump_add_repo
2026-01-10 00:52:10,346 [ scc.git] DEBUG Calling 'git submodule status'
2026-01-10 00:52:10,385 [ scc.config] DEBUG Found remote.origin.url
2026-01-10 00:52:10,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2026-01-10 00:52:11,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-01-10 00:52:11,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-01-10 00:52:12,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-01-10 00:52:12,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-01-10 00:52:12,587 [ scc.git] DEBUG Resetting...
2026-01-10 00:52:12,587 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-01-10 00:52:12,602 [ scc.git] DEBUG HEAD is now at 6aa281a7e Merge pull request #470 from dominikl/bump_add_repo
2026-01-10 00:52:12,602 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-01-10 00:52:12,639 [ scc.git] DEBUG Check current status
2026-01-10 00:52:12,639 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-01-10 00:52:12,642 [ scc.git] DEBUG 6aa281a7e Merge pull request #470 from dominikl/bump_add_repo
2026-01-10 00:52:12,642 [ scc.git] DEBUG Calling 'git submodule status'
2026-01-10 00:52:12,678 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-01-10 00:52:12,678 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-01-10 00:52:12,678 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-01-10 00:52:12,678 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-01-10 00:52:12,678 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-01-10 00:52:12,678 [ scc.repo] DEBUG ## PRs found:
2026-01-10 00:52:13,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2026-01-10 00:52:13,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/477 HTTP/1.1" 200 None
2026-01-10 00:52:14,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/461 HTTP/1.1" 200 None
2026-01-10 00:52:14,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/461/comments HTTP/1.1" 200 None
2026-01-10 00:52:14,595 [ scc.repo] DEBUG - PR 461 jburel 'Update infra'
2026-01-10 00:52:15,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/443 HTTP/1.1" 200 None
2026-01-10 00:52:15,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/443/comments HTTP/1.1" 200 None
2026-01-10 00:52:15,594 [ scc.repo] DEBUG - PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
2026-01-10 00:52:16,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2026-01-10 00:52:16,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2026-01-10 00:52:16,535 [ scc.repo] DEBUG ## Branches found:
2026-01-10 00:52:16,535 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:16,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:16,538 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-10 00:52:16,540 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-10 00:52:16,540 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-10 00:52:16,542 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-10 00:52:16,545 [ scc.git] DEBUG Already up to date.
2026-01-10 00:52:16,545 [ scc.git] DEBUG Calling 'git fetch origin pull/443/head'
2026-01-10 00:52:16,823 [ scc.git] DEBUG From https://github.com/ome/omero-insight
2026-01-10 00:52:16,823 [ scc.git] DEBUG * branch refs/pull/443/head -> FETCH_HEAD
2026-01-10 00:52:16,826 [ scc.git] DEBUG Calling 'git fetch origin pull/461/head'
2026-01-10 00:52:17,081 [ scc.git] DEBUG From https://github.com/ome/omero-insight
2026-01-10 00:52:17,081 [ scc.git] DEBUG * branch refs/pull/461/head -> FETCH_HEAD
2026-01-10 00:52:17,085 [ scc.git] DEBUG ## Unique users: []
2026-01-10 00:52:17,085 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:17,085 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:17,087 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...277768efcbcd219460921b2d91b944d1f2b18eed'
2026-01-10 00:52:17,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:17,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 443 (Perceptibly uniform luts for OMERO.insight) 277768efcbcd219460921b2d91b944d1f2b18eed'
2026-01-10 00:52:17,114 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-10 00:52:17,117 [ scc.git] DEBUG .../util/ui/colourpicker/LookupTableIconUtil.java | 20 +++++++++++---------
2026-01-10 00:52:17,117 [ scc.git] DEBUG src/main/resources/images/util/lookuptables.png | Bin 19356 -> 23024 bytes
2026-01-10 00:52:17,117 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-10 00:52:17,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:17,277 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...adeb9a483e7af32104c399719ece4b5f325e576b'
2026-01-10 00:52:17,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:17,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 461 (Update infra) adeb9a483e7af32104c399719ece4b5f325e576b'
2026-01-10 00:52:17,300 [ scc.git] DEBUG Auto-merging build.gradle
2026-01-10 00:52:17,302 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-10 00:52:17,305 [ scc.git] DEBUG .github/workflows/gradle.yml | 36 ++++++++++++++++++------------------
2026-01-10 00:52:17,305 [ scc.git] DEBUG build.gradle | 4 ++--
2026-01-10 00:52:17,305 [ scc.git] DEBUG 2 files changed, 20 insertions(+), 20 deletions(-)
2026-01-10 00:52:17,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:17,662 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-10 00:52:17,699 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:17,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:17,701 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-10 00:52:17,711 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fee8e614ad0> has no local changes
2026-01-10 00:52:17,711 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-insight
Excluded PRs:
- PR 477 dominikl 'Add jackson dependency' (stage: draft)
- PR 377 sukunis 'Fix ontology loads' (exclude comment)
- PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.
Merged PRs:
- PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
- PR 461 jburel 'Update infra'
Generated by OMERO-insight-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-insight-push/12/)'
2026-01-10 00:52:17,722 [ scc.git] DEBUG [detached HEAD ab60d7989] merge master -Dorg -Snone
2026-01-10 00:52:17,722 [ scc.merge] INFO Repository: ome/omero-insight
2026-01-10 00:52:17,722 [ scc.merge] INFO Excluded PRs:
2026-01-10 00:52:17,722 [ scc.merge] INFO - PR 477 dominikl 'Add jackson dependency' (stage: draft)
2026-01-10 00:52:17,722 [ scc.merge] INFO - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2026-01-10 00:52:17,722 [ scc.merge] INFO - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2026-01-10 00:52:17,722 [ scc.merge] INFO Already up to date.
2026-01-10 00:52:17,722 [ scc.merge] INFO
2026-01-10 00:52:17,722 [ scc.merge] INFO Merged PRs:
2026-01-10 00:52:17,722 [ scc.merge] INFO - PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
2026-01-10 00:52:17,722 [ scc.merge] INFO - PR 461 jburel 'Update infra'
2026-01-10 00:52:17,722 [ scc.merge] INFO
2026-01-10 00:52:17,722 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-10 00:52:17,722 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-01-10 00:52:18,137 [ scc.config] DEBUG Found github.token
2026-01-10 00:52:18,138 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-01-10 00:52:18,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:18,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:19,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-01-10 00:52:19,112 [ scc.gh] DEBUG 3150 remaining from 5000 (Reset at 01:01
2026-01-10 00:52:19,112 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-01-10 00:52:19,114 [ scc.git] DEBUG Check current status
2026-01-10 00:52:19,114 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-01-10 00:52:19,117 [ scc.git] DEBUG ab60d7989 merge master -Dorg -Snone
2026-01-10 00:52:19,117 [ scc.git] DEBUG Calling 'git submodule status'
2026-01-10 00:52:19,156 [ scc.config] DEBUG Found remote.origin.url
2026-01-10 00:52:19,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight HTTP/1.1" 200 None
2026-01-10 00:52:20,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-01-10 00:52:20,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-01-10 00:52:21,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-01-10 00:52:21,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-01-10 00:52:21,440 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-10 00:52:21,477 [ scc.git] DEBUG Resetting...
2026-01-10 00:52:21,477 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-01-10 00:52:21,492 [ scc.git] DEBUG HEAD is now at ab60d7989 merge master -Dorg -Snone
2026-01-10 00:52:21,492 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-01-10 00:52:21,528 [ scc.git] DEBUG Check current status
2026-01-10 00:52:21,528 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-01-10 00:52:21,530 [ scc.git] DEBUG ab60d7989 merge master -Dorg -Snone
2026-01-10 00:52:21,531 [ scc.git] DEBUG Calling 'git submodule status'
2026-01-10 00:52:21,566 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-01-10 00:52:21,566 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-01-10 00:52:21,566 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-01-10 00:52:21,566 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-01-10 00:52:21,566 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-01-10 00:52:21,566 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-01-10 00:52:21,566 [ scc.repo] DEBUG ## PRs found:
2026-01-10 00:52:21,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/pulls HTTP/1.1" 200 None
2026-01-10 00:52:22,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/477 HTTP/1.1" 200 None
2026-01-10 00:52:23,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/461 HTTP/1.1" 200 None
2026-01-10 00:52:23,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/461/comments HTTP/1.1" 200 None
2026-01-10 00:52:23,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b HTTP/1.1" 200 None
2026-01-10 00:52:24,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-10 00:52:24,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-10 00:52:25,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b HTTP/1.1" 200 None
2026-01-10 00:52:25,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/adeb9a483e7af32104c399719ece4b5f325e576b?per_page=1 HTTP/1.1" 200 None
2026-01-10 00:52:26,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b HTTP/1.1" 200 None
2026-01-10 00:52:26,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/adeb9a483e7af32104c399719ece4b5f325e576b/status HTTP/1.1" 200 None
2026-01-10 00:52:26,885 [ scc.repo] DEBUG - PR 461 jburel 'Update infra'
2026-01-10 00:52:27,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/443 HTTP/1.1" 200 None
2026-01-10 00:52:27,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/443/comments HTTP/1.1" 200 None
2026-01-10 00:52:28,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/277768efcbcd219460921b2d91b944d1f2b18eed HTTP/1.1" 200 None
2026-01-10 00:52:28,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/277768efcbcd219460921b2d91b944d1f2b18eed/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-10 00:52:29,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/commits/277768efcbcd219460921b2d91b944d1f2b18eed HTTP/1.1" 200 None
2026-01-10 00:52:29,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/statuses/277768efcbcd219460921b2d91b944d1f2b18eed?per_page=1 HTTP/1.1" 200 2
2026-01-10 00:52:29,640 [ scc.repo] DEBUG - PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
2026-01-10 00:52:30,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310 HTTP/1.1" 200 None
2026-01-10 00:52:30,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-insight/issues/310/comments HTTP/1.1" 200 None
2026-01-10 00:52:30,634 [ scc.repo] DEBUG ## Branches found:
2026-01-10 00:52:30,635 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:30,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:30,637 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-10 00:52:30,639 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-10 00:52:30,639 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-10 00:52:30,642 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-10 00:52:30,645 [ scc.git] DEBUG Already up to date.
2026-01-10 00:52:30,645 [ scc.git] DEBUG Calling 'git fetch origin pull/443/head'
2026-01-10 00:52:30,923 [ scc.git] DEBUG From https://github.com/ome/omero-insight
2026-01-10 00:52:30,923 [ scc.git] DEBUG * branch refs/pull/443/head -> FETCH_HEAD
2026-01-10 00:52:30,927 [ scc.git] DEBUG Calling 'git fetch origin pull/461/head'
2026-01-10 00:52:31,181 [ scc.git] DEBUG From https://github.com/ome/omero-insight
2026-01-10 00:52:31,181 [ scc.git] DEBUG * branch refs/pull/461/head -> FETCH_HEAD
2026-01-10 00:52:31,185 [ scc.git] DEBUG ## Unique users: []
2026-01-10 00:52:31,185 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:31,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:31,187 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...277768efcbcd219460921b2d91b944d1f2b18eed'
2026-01-10 00:52:31,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:31,193 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 443 (Perceptibly uniform luts for OMERO.insight) 277768efcbcd219460921b2d91b944d1f2b18eed'
2026-01-10 00:52:31,197 [ scc.git] DEBUG Already up to date.
2026-01-10 00:52:31,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:31,365 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...adeb9a483e7af32104c399719ece4b5f325e576b'
2026-01-10 00:52:31,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:31,370 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 461 (Update infra) adeb9a483e7af32104c399719ece4b5f325e576b'
2026-01-10 00:52:31,374 [ scc.git] DEBUG Already up to date.
2026-01-10 00:52:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-10 00:52:31,760 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-10 00:52:31,798 [ scc.git] DEBUG Get sha1 of %s
2026-01-10 00:52:31,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-10 00:52:31,800 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-10 00:52:31,836 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-10 00:52:31,844 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fec4061ddd0> has no local changes
2026-01-10 00:52:31,844 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-insight
Excluded PRs:
- PR 477 dominikl 'Add jackson dependency' (stage: draft)
- PR 377 sukunis 'Fix ontology loads' (exclude comment)
- PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
Already up to date.
Merged PRs:
- PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
- PR 461 jburel 'Update infra'
Generated by OMERO-insight-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-insight-push/12/)'
2026-01-10 00:52:31,854 [ scc.git] DEBUG [detached HEAD f59c526c0] merge master -Dorg -Ssuccess-only
2026-01-10 00:52:31,855 [ scc.merge] INFO Repository: ome/omero-insight
2026-01-10 00:52:31,855 [ scc.merge] INFO Excluded PRs:
2026-01-10 00:52:31,855 [ scc.merge] INFO - PR 477 dominikl 'Add jackson dependency' (stage: draft)
2026-01-10 00:52:31,855 [ scc.merge] INFO - PR 377 sukunis 'Fix ontology loads' (exclude comment)
2026-01-10 00:52:31,855 [ scc.merge] INFO - PR 310 dominikl 'Add depth option to importer and include ZarrReader' (exclude comment)
2026-01-10 00:52:31,855 [ scc.merge] INFO Already up to date.
2026-01-10 00:52:31,855 [ scc.merge] INFO
2026-01-10 00:52:31,855 [ scc.merge] INFO Merged PRs:
2026-01-10 00:52:31,855 [ scc.merge] INFO - PR 443 Tom-TBT 'Perceptibly uniform luts for OMERO.insight'
2026-01-10 00:52:31,855 [ scc.merge] INFO - PR 461 jburel 'Update infra'
2026-01-10 00:52:31,855 [ scc.merge] INFO
2026-01-10 00:52:31,855 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-10 00:52:31,855 [ scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.9.3 to 5.10.5-SNAPSHOT
Commit all component version changes
[detached HEAD 7044fbf01] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-10 00:52:37,882 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-insight/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS