Started by upstream project "Trigger" build number 133
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision af267baf738bf563fa6d26d1f37a3717d679c59f
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision af267baf738bf563fa6d26d1f37a3717d679c59f (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f af267baf738bf563fa6d26d1f37a3717d679c59f # timeout=10
Commit message: "Merge pull request #19 from will-moore/readme"
> git rev-list --no-walk af267baf738bf563fa6d26d1f37a3717d679c59f # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-plugins.git
> git --version # timeout=10
> git --version # 'git version 2.52.0'
> git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master)
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10
Commit message: "Merge pull request #434 from will-moore/figure"
> git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.omero-figure.url # timeout=10
> git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
> git config --get submodule.minimal-omero-client.url # timeout=10
> git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.omero-test-infra.url # timeout=10
> git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
> git config --get submodule.omero-prometheus-tools.url # timeout=10
> git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
> git config --get submodule.omero-parade.url # timeout=10
> git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
> git config --get submodule.omero-mapr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
> git config --get submodule.omero-fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
> git config --get submodule.omero-iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
> git config --get submodule.omero-gallery.url # timeout=10
> git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
> git config --get submodule.rOMERO-gateway.url # timeout=10
> git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
> git config --get submodule.omero-weberror.url # timeout=10
> git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
> git config --get submodule.omero-cli-render.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
> git config --get submodule.omero-cli-duplicate.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
> git config --get submodule.omero-metadata.url # timeout=10
> git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
> git config --get submodule.omero-webtest.url # timeout=10
> git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
> git config --get submodule.omero-upload.url # timeout=10
> git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
> git config --get submodule.omero-virtual-microscope.url # timeout=10
> git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
> git config --get submodule.omero-rois.url # timeout=10
> git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
> git config --get submodule.omero-signup.url # timeout=10
> git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
> git config --get submodule.omero-web-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10
> git config --get submodule.omero-cli-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10
> git config --get submodule.figure.url # timeout=10
> git config -f .gitmodules --get submodule.figure.path # timeout=10
> git submodule update --init --recursive omero-figure # timeout=10
> git submodule update --init --recursive minimal-omero-client # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive omero-test-infra # timeout=10
> git submodule update --init --recursive omero-prometheus-tools # timeout=10
> git submodule update --init --recursive omero-parade # timeout=10
> git submodule update --init --recursive omero-mapr # timeout=10
> git submodule update --init --recursive omero-fpbioimage # timeout=10
> git submodule update --init --recursive omero-iviewer # timeout=10
> git submodule update --init --recursive omero-gallery # timeout=10
> git submodule update --init --recursive rOMERO-gateway # timeout=10
> git submodule update --init --recursive omero-weberror # timeout=10
> git submodule update --init --recursive omero-cli-render # timeout=10
> git submodule update --init --recursive omero-cli-duplicate # timeout=10
> git submodule update --init --recursive omero-metadata # timeout=10
> git submodule update --init --recursive omero-webtest # timeout=10
> git submodule update --init --recursive omero-upload # timeout=10
> git submodule update --init --recursive omero-virtual-microscope # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 114
[Pipeline] sh
> git submodule update --init --recursive omero-rois # timeout=10
> git submodule update --init --recursive omero-signup # timeout=10
> git submodule update --init --recursive omero-web-zarr # timeout=10
> git submodule update --init --recursive omero-cli-zarr # timeout=10
> git submodule update --init --recursive figure # timeout=10
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ tar -zxf -
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ popd
~/workspace/OMERO-plugins-push
+ python3.11 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ python3.11 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.3.1
Uninstalling pip-22.3.1:
Successfully uninstalled pip-22.3.1
Successfully installed pip-26.2.1
+ python3.11 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pycparser-3.11-py3-none-any.whl.metadata (8.2 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached pygithub-2.10.0-py3-none-any.whl (455 kB)
Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB)
Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
Using cached requests-2.34.2-py3-none-any.whl (73 kB)
Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
Using cached idna-3.20-py3-none-any.whl (69 kB)
Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached pycparser-3.11-py3-none-any.whl (51 kB)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.11 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-10-17 23:34:57,580 [ scc.config] DEBUG Found github.token
2026-10-17 23:34:57,582 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-17 23:34:57,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:34:58,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:34:58,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-17 23:34:58,713 [ scc.gh] DEBUG 4998 remaining from 5000 (Reset at 00:10
2026-10-17 23:34:58,714 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:34:58,722 [ scc.git] DEBUG Check current status
2026-10-17 23:34:58,723 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:34:58,749 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure
2026-10-17 23:34:58,750 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:34:58,972 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-17 23:34:59,059 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-17 23:34:59,104 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-17 23:34:59,157 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-17 23:34:59,204 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-17 23:34:59,297 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-10-17 23:34:59,335 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-17 23:34:59,400 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-17 23:34:59,519 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-10-17 23:34:59,562 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-17 23:34:59,618 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-17 23:34:59,701 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-17 23:34:59,740 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-17 23:34:59,805 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-17 23:34:59,865 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-17 23:34:59,906 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-17 23:34:59,978 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-17 23:35:00,026 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-17 23:35:00,082 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-17 23:35:00,143 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-17 23:35:00,220 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-17 23:35:00,258 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-17 23:35:00,282 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-10-17 23:35:00,293 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:00,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-10-17 23:35:01,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:01,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:02,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:02,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:02,587 [ scc.git] DEBUG Resetting...
2026-10-17 23:35:02,587 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-17 23:35:02,908 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure
2026-10-17 23:35:02,909 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-17 23:35:04,162 [ scc.git] DEBUG Check current status
2026-10-17 23:35:04,162 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:04,182 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure
2026-10-17 23:35:04,183 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:04,418 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-17 23:35:04,510 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-17 23:35:04,547 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-17 23:35:04,584 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-17 23:35:04,628 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-17 23:35:04,685 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-10-17 23:35:04,715 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-17 23:35:04,745 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-17 23:35:04,818 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-10-17 23:35:04,848 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-17 23:35:04,889 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-17 23:35:04,928 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-17 23:35:04,958 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-17 23:35:04,990 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-17 23:35:05,022 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-17 23:35:05,054 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-17 23:35:05,086 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-17 23:35:05,118 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-17 23:35:05,145 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-17 23:35:05,174 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-17 23:35:05,202 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-17 23:35:05,234 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-17 23:35:05,253 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-10-17 23:35:05,254 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-17 23:35:05,254 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-17 23:35:05,254 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-17 23:35:05,254 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-17 23:35:05,254 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-17 23:35:05,254 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:35:05,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-10-17 23:35:06,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-10-17 23:35:06,086 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:35:06,086 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-17 23:35:06,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-10-17 23:35:06,627 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:35:06,627 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-17 23:35:07,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-10-17 23:35:07,130 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:35:07,130 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-17 23:35:07,130 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:35:07,130 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:35:07,130 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:07,143 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:35:07,160 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:35:07,161 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:35:07,185 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:35:07,245 [ scc.git] DEBUG Already up to date.
2026-10-17 23:35:07,245 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-10-17 23:35:07,690 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:35:07,690 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-10-17 23:35:07,717 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-10-17 23:35:08,119 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:35:08,119 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-10-17 23:35:08,151 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-10-17 23:35:08,570 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:35:08,570 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-10-17 23:35:08,601 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:35:08,602 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:35:08,602 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:08,613 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-17 23:35:08,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:08,648 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-17 23:35:09,250 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:35:09,312 [ scc.git] DEBUG scripts | 2 +-
2026-10-17 23:35:09,313 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:35:09,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:35:09,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-17 23:35:09,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:09,762 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-17 23:35:10,445 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:35:10,526 [ scc.git] DEBUG omero-figure | 2 +-
2026-10-17 23:35:10,526 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:35:10,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:35:10,770 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-17 23:35:10,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:10,823 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-17 23:35:11,476 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:35:11,533 [ scc.git] DEBUG omero-iviewer | 2 +-
2026-10-17 23:35:11,533 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:35:11,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:35:11,728 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:35:12,666 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-10-17 23:35:13,806 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-10-17 23:35:14,143 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-10-17 23:35:14,144 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:35:14,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:35:14,155 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:35:16,652 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fae06da89d0> has no local changes
2026-10-17 23:35:16,653 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:35:18,099 [ scc.git] DEBUG [detached HEAD 4b2d71a] merge master -Dorg -Snone
2026-10-17 23:35:18,100 [ scc.merge] INFO Repository: ome/omero-plugins
2026-10-17 23:35:18,100 [ scc.merge] INFO Already up to date.
2026-10-17 23:35:18,100 [ scc.merge] INFO
2026-10-17 23:35:18,100 [ scc.merge] INFO Merged PRs:
2026-10-17 23:35:18,100 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-17 23:35:18,100 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-17 23:35:18,100 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-17 23:35:18,100 [ scc.merge] INFO
2026-10-17 23:35:18,101 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-17 23:35:18,101 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'minimal-omero-client'
Synchronizing submodule url for 'omero-cli-duplicate'
Synchronizing submodule url for 'omero-cli-render'
Synchronizing submodule url for 'omero-cli-zarr'
Synchronizing submodule url for 'omero-figure'
Synchronizing submodule url for 'omero-fpbioimage'
Synchronizing submodule url for 'omero-gallery'
Synchronizing submodule url for 'omero-iviewer'
Synchronizing submodule url for 'omero-mapr'
Synchronizing submodule url for 'omero-metadata'
Synchronizing submodule url for 'omero-parade'
Synchronizing submodule url for 'omero-prometheus-tools'
Synchronizing submodule url for 'omero-rois'
Synchronizing submodule url for 'omero-signup'
Synchronizing submodule url for 'omero-test-infra'
Synchronizing submodule url for 'omero-upload'
Synchronizing submodule url for 'omero-virtual-microscope'
Synchronizing submodule url for 'omero-web-zarr'
Synchronizing submodule url for 'omero-weberror'
Synchronizing submodule url for 'omero-webtest'
Synchronizing submodule url for 'rOMERO-gateway'
Synchronizing submodule url for 'scripts'
Submodule path 'figure': checked out 'e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1'
Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8'
Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147'
From https://github.com/ome/omero-iviewer
* [new branch] dependabot/npm_and_yarn/compression-1.8.2 -> origin/dependabot/npm_and_yarn/compression-1.8.2
Submodule path 'omero-iviewer': checked out '0a836211ba48a84aff07486e3d18cfe9c5f52e76'
Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b'
Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77'
Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f'
Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368'
Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0'
Merge all submodules using repository configuration:
base-branch: master
submodules:
scripts:
base-branch: develop
omero-web-zarr:
base-branch: main
2026-10-17 23:35:41,501 [ scc.config] DEBUG Found github.token
2026-10-17 23:35:41,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-17 23:35:41,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:35:42,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:35:42,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-17 23:35:42,633 [ scc.gh] DEBUG 4984 remaining from 5000 (Reset at 00:10
2026-10-17 23:35:42,633 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:42,644 [ scc.git] DEBUG Check current status
2026-10-17 23:35:42,645 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:42,664 [ scc.git] DEBUG 4b2d71a merge master -Dorg -Snone
2026-10-17 23:35:42,664 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:42,865 [ scc.git] DEBUG +e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1 figure (remotes/origin/HEAD)
2026-10-17 23:35:42,943 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-17 23:35:42,974 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-17 23:35:43,006 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303)
2026-10-17 23:35:43,046 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8)
2026-10-17 23:35:43,105 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df)
2026-10-17 23:35:43,138 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-17 23:35:43,168 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-17 23:35:43,241 [ scc.git] DEBUG +0a836211ba48a84aff07486e3d18cfe9c5f52e76 omero-iviewer (v0.19.1-1-g0a836211)
2026-10-17 23:35:43,274 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-17 23:35:43,314 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4)
2026-10-17 23:35:43,345 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-17 23:35:43,377 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-17 23:35:43,410 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96)
2026-10-17 23:35:43,443 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-17 23:35:43,480 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015)
2026-10-17 23:35:43,510 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-17 23:35:43,542 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894)
2026-10-17 23:35:43,574 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685)
2026-10-17 23:35:43,607 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-17 23:35:43,637 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-17 23:35:43,669 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-17 23:35:43,690 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768)
2026-10-17 23:35:43,703 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:43,703 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2026-10-17 23:35:43,706 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-web-zarr:
base-branch: main
scripts:
base-branch: develop
2026-10-17 23:35:43,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-10-17 23:35:44,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:44,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:45,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:45,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:45,849 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:46,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-17 23:35:46,043 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:46,056 [ scc.git] DEBUG Check current status
2026-10-17 23:35:46,056 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:46,082 [ scc.git] DEBUG e92b4e8 Merge pull request #20 from will-moore/hide_export_dropdown_unless_omero
2026-10-17 23:35:46,084 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:46,206 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:46,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None
2026-10-17 23:35:47,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:47,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:47,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:48,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:48,378 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:48,512 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:35:48,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-17 23:35:48,513 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:48,527 [ scc.git] DEBUG Check current status
2026-10-17 23:35:48,527 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:48,549 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0
2026-10-17 23:35:48,550 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:48,677 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:48,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None
2026-10-17 23:35:49,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:49,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:50,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:50,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:50,871 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:50,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:35:50,995 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-17 23:35:50,995 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:51,009 [ scc.git] DEBUG Check current status
2026-10-17 23:35:51,009 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:51,030 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build
2026-10-17 23:35:51,031 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:51,163 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:51,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None
2026-10-17 23:35:51,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:52,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:52,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:53,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:53,304 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:53,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:35:53,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-17 23:35:53,427 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:53,443 [ scc.git] DEBUG Check current status
2026-10-17 23:35:53,443 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:53,466 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease
2026-10-17 23:35:53,467 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:53,601 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:53,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None
2026-10-17 23:35:54,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:54,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:55,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:55,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:55,791 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:55,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:35:55,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-17 23:35:55,911 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:55,928 [ scc.git] DEBUG Check current status
2026-10-17 23:35:55,928 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:55,952 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-17 23:35:55,953 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:56,079 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:56,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None
2026-10-17 23:35:56,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:57,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:35:57,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:35:58,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:35:58,313 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:35:58,425 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:35:58,425 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-17 23:35:58,426 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:35:58,440 [ scc.git] DEBUG Check current status
2026-10-17 23:35:58,440 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:35:58,469 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0
2026-10-17 23:35:58,472 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:35:58,599 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:35:58,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None
2026-10-17 23:35:59,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:35:59,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:00,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:00,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:00,798 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:00,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:00,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-17 23:36:00,922 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:00,936 [ scc.git] DEBUG Check current status
2026-10-17 23:36:00,936 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:00,967 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build
2026-10-17 23:36:00,968 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:01,089 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:01,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None
2026-10-17 23:36:01,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:02,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:02,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:03,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:03,300 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:03,418 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:03,419 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-17 23:36:03,419 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:03,435 [ scc.git] DEBUG Check current status
2026-10-17 23:36:03,435 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:03,458 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build
2026-10-17 23:36:03,459 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:03,594 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:03,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None
2026-10-17 23:36:04,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:04,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:05,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:05,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:05,809 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:05,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:05,934 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-17 23:36:05,934 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:05,948 [ scc.git] DEBUG Check current status
2026-10-17 23:36:05,948 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:05,981 [ scc.git] DEBUG 0a836211 Add dev to version
2026-10-17 23:36:05,985 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:06,122 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:06,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None
2026-10-17 23:36:07,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:07,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:08,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:08,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:08,504 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:08,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:08,614 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-17 23:36:08,614 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:08,628 [ scc.git] DEBUG Check current status
2026-10-17 23:36:08,629 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:08,650 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0
2026-10-17 23:36:08,652 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:08,770 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:09,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None
2026-10-17 23:36:09,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:10,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:10,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:11,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:11,087 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:11,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:11,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-17 23:36:11,216 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:11,230 [ scc.git] DEBUG Check current status
2026-10-17 23:36:11,231 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:11,255 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation
2026-10-17 23:36:11,256 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:11,388 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:11,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None
2026-10-17 23:36:12,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:12,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:13,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:13,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:13,592 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:13,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:13,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-17 23:36:13,719 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:13,734 [ scc.git] DEBUG Check current status
2026-10-17 23:36:13,734 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:13,756 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build
2026-10-17 23:36:13,757 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:13,887 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:14,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None
2026-10-17 23:36:14,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:15,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:15,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:16,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:16,119 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:16,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:16,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-17 23:36:16,234 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:16,245 [ scc.git] DEBUG Check current status
2026-10-17 23:36:16,246 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:16,278 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build
2026-10-17 23:36:16,279 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:16,397 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:16,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None
2026-10-17 23:36:17,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:17,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:18,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:18,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:18,624 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:18,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:18,743 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-17 23:36:18,744 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:18,756 [ scc.git] DEBUG Check current status
2026-10-17 23:36:18,756 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:18,775 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-10-17 23:36:18,776 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:18,897 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:19,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None
2026-10-17 23:36:19,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:20,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:20,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:21,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:21,048 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:21,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:21,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-17 23:36:21,177 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:21,195 [ scc.git] DEBUG Check current status
2026-10-17 23:36:21,195 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:21,216 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build
2026-10-17 23:36:21,217 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:21,347 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:21,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None
2026-10-17 23:36:22,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:22,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:23,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:23,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:23,739 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:23,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:23,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-17 23:36:23,865 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:23,881 [ scc.git] DEBUG Check current status
2026-10-17 23:36:23,881 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:23,901 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme
2026-10-17 23:36:23,902 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:24,029 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:24,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-17 23:36:24,220 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-17 23:36:24,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None
2026-10-17 23:36:24,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:25,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:26,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:26,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:26,554 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:26,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:26,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-17 23:36:26,675 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:26,688 [ scc.git] DEBUG Check current status
2026-10-17 23:36:26,688 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:26,708 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build
2026-10-17 23:36:26,709 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:26,836 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:27,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None
2026-10-17 23:36:27,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:28,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:28,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:29,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:29,062 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:29,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:29,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-17 23:36:29,203 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:29,217 [ scc.git] DEBUG Check current status
2026-10-17 23:36:29,218 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:29,239 [ scc.git] DEBUG 160d894 Fix display of code
2026-10-17 23:36:29,240 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:29,386 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:29,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None
2026-10-17 23:36:30,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:30,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:31,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:31,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:31,646 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:31,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:31,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-17 23:36:31,761 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:31,774 [ scc.git] DEBUG Check current status
2026-10-17 23:36:31,774 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:31,791 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-10-17 23:36:31,792 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:31,922 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:31,922 [ scc.git] DEBUG Repository configuration:
base-branch: main
2026-10-17 23:36:32,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None
2026-10-17 23:36:32,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:33,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:33,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:34,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:34,205 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:34,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:34,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-17 23:36:34,322 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:34,337 [ scc.git] DEBUG Check current status
2026-10-17 23:36:34,337 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:34,357 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build
2026-10-17 23:36:34,357 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:34,467 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:34,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-17 23:36:34,704 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-17 23:36:35,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None
2026-10-17 23:36:35,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:35,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:36,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:36,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:36,881 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:36,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:36,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-17 23:36:36,987 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:36,999 [ scc.git] DEBUG Check current status
2026-10-17 23:36:36,999 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:37,017 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build
2026-10-17 23:36:37,018 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:37,133 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:37,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-17 23:36:37,335 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-17 23:36:37,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None
2026-10-17 23:36:38,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:38,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:39,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:39,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:39,755 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:39,876 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:39,877 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-17 23:36:39,877 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:39,893 [ scc.git] DEBUG Check current status
2026-10-17 23:36:39,893 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:39,915 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2026-10-17 23:36:39,916 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:40,034 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:40,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None
2026-10-17 23:36:40,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:41,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:41,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:42,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:42,182 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:42,293 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:42,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-17 23:36:42,294 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-17 23:36:42,306 [ scc.git] DEBUG Check current status
2026-10-17 23:36:42,306 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:42,327 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0
2026-10-17 23:36:42,327 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:42,452 [ scc.config] DEBUG Found remote.origin.url
2026-10-17 23:36:42,453 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2026-10-17 23:36:42,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-17 23:36:42,654 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-17 23:36:42,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None
2026-10-17 23:36:43,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-17 23:36:43,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-17 23:36:44,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-17 23:36:44,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-17 23:36:44,854 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:36:44,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:36:44,970 [ scc.git] DEBUG Resetting...
2026-10-17 23:36:44,970 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-17 23:36:45,325 [ scc.git] DEBUG HEAD is now at 4b2d71a merge master -Dorg -Snone
2026-10-17 23:36:45,327 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-17 23:36:45,812 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f'
2026-10-17 23:36:46,112 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264'
2026-10-17 23:36:46,530 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62'
2026-10-17 23:36:47,681 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-10-17 23:36:48,970 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-10-17 23:36:49,331 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997'
2026-10-17 23:36:49,740 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9'
2026-10-17 23:36:50,026 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73'
2026-10-17 23:36:50,291 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743'
2026-10-17 23:36:50,520 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2026-10-17 23:36:51,048 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-10-17 23:36:51,070 [ scc.git] DEBUG Check current status
2026-10-17 23:36:51,070 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-17 23:36:51,086 [ scc.git] DEBUG 4b2d71a merge master -Dorg -Snone
2026-10-17 23:36:51,087 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-17 23:36:51,299 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-17 23:36:51,380 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-17 23:36:51,411 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-17 23:36:51,442 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-17 23:36:51,483 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-17 23:36:51,539 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde)
2026-10-17 23:36:51,569 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-17 23:36:51,603 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-17 23:36:51,686 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee)
2026-10-17 23:36:51,725 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-17 23:36:51,766 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-17 23:36:51,804 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-17 23:36:51,838 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-17 23:36:51,874 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-17 23:36:51,912 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-17 23:36:51,945 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-17 23:36:51,978 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-17 23:36:52,011 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-17 23:36:52,042 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-17 23:36:52,075 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-17 23:36:52,109 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-17 23:36:52,141 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-17 23:36:52,162 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755)
2026-10-17 23:36:52,163 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-17 23:36:52,163 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-17 23:36:52,163 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-17 23:36:52,163 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-17 23:36:52,163 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-17 23:36:52,163 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-10-17 23:36:52,163 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:36:52,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-10-17 23:36:52,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-10-17 23:36:52,999 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:36:53,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-10-17 23:36:54,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:36:54,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-10-17 23:36:55,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:36:55,099 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-17 23:36:55,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-10-17 23:36:55,598 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:36:56,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-10-17 23:36:56,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:36:57,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-10-17 23:36:57,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:36:57,806 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-17 23:36:58,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-10-17 23:36:58,326 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:36:58,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-10-17 23:36:59,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:36:59,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:00,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:37:00,345 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-17 23:37:00,345 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:00,345 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:00,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:00,358 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:00,374 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:00,374 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:00,397 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:00,452 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:00,452 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-10-17 23:37:00,873 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:37:00,873 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-10-17 23:37:00,914 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-10-17 23:37:01,535 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:37:01,535 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-10-17 23:37:01,568 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-10-17 23:37:02,176 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-17 23:37:02,176 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-10-17 23:37:02,215 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:37:02,215 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:02,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:02,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-17 23:37:02,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:02,262 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-17 23:37:02,314 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:02,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:02,503 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-17 23:37:02,529 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:02,539 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-17 23:37:02,598 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:02,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:02,934 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-17 23:37:02,964 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:02,976 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-17 23:37:03,032 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:03,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:03,357 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:37:04,108 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:04,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:04,120 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:37:04,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None
2026-10-17 23:37:05,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21 HTTP/1.1" 200 None
2026-10-17 23:37:05,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21/comments HTTP/1.1" 200 None
2026-10-17 23:37:05,664 [ scc.repo] DEBUG # ... Include label: include
2026-10-17 23:37:06,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:06,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:07,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:07,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/2ee7ef68e92851305e84f793e1301b6a97fc7200?per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:08,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:08,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/status HTTP/1.1" 200 None
2026-10-17 23:37:08,798 [ scc.repo] DEBUG - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
2026-10-17 23:37:09,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None
2026-10-17 23:37:09,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None
2026-10-17 23:37:10,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:10,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:11,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:11,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/7f38d9606d8fabb03308615a3108dabe4ddff54f?per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:12,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:12,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f/status HTTP/1.1" 200 None
2026-10-17 23:37:12,737 [ scc.repo] DEBUG - PR 12 will-moore 'Browser based export'
2026-10-17 23:37:13,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None
2026-10-17 23:37:13,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None
2026-10-17 23:37:14,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None
2026-10-17 23:37:14,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None
2026-10-17 23:37:15,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:15,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:16,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:16,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:17,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:17,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/status HTTP/1.1" 200 None
2026-10-17 23:37:17,767 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-10-17 23:37:17,767 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:17,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-17 23:37:17,768 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:17,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:17,785 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:17,804 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:17,804 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:17,894 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:18,436 [ scc.git] DEBUG Updating 3935875..e92b4e8
2026-10-17 23:37:19,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/20 HTTP/1.1" 200 None
2026-10-17 23:37:19,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 None
2026-10-17 23:37:20,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 None
2026-10-17 23:37:21,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None
2026-10-17 23:37:22,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None
2026-10-17 23:37:22,347 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head'
2026-10-17 23:37:23,265 [ scc.git] DEBUG From https://github.com/ome/figure
2026-10-17 23:37:23,265 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD
2026-10-17 23:37:23,293 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2026-10-17 23:37:23,796 [ scc.git] DEBUG From https://github.com/ome/figure
2026-10-17 23:37:23,796 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2026-10-17 23:37:23,826 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-10-17 23:37:24,306 [ scc.git] DEBUG From https://github.com/ome/figure
2026-10-17 23:37:24,306 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-10-17 23:37:24,336 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:37:24,336 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:24,336 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:24,351 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fbc156c89d5749c985216f2fddcbfb9eb34a4d5a'
2026-10-17 23:37:24,435 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:24,450 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) fbc156c89d5749c985216f2fddcbfb9eb34a4d5a'
2026-10-17 23:37:25,001 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:37:25,076 [ scc.git] DEBUG sample_figures/IDR_JAX_images.json | 4304 ++++++++++++++++++++++++++++++++
2026-10-17 23:37:25,076 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 2086 ++++++++++++++++
2026-10-17 23:37:25,077 [ scc.git] DEBUG src/js/models/zarr_utils.js | 11 +-
2026-10-17 23:37:25,077 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +-
2026-10-17 23:37:25,077 [ scc.git] DEBUG 4 files changed, 6400 insertions(+), 5 deletions(-)
2026-10-17 23:37:25,077 [ scc.git] DEBUG create mode 100644 sample_figures/IDR_JAX_images.json
2026-10-17 23:37:25,077 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json
2026-10-17 23:37:25,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:25,271 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7f38d9606d8fabb03308615a3108dabe4ddff54f'
2026-10-17 23:37:25,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:25,363 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (Browser based export) 7f38d9606d8fabb03308615a3108dabe4ddff54f'
2026-10-17 23:37:25,844 [ scc.git] DEBUG Auto-merging src/js/models/zarr_utils.js
2026-10-17 23:37:25,919 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:37:26,024 [ scc.git] DEBUG ome_figure/export_script.py | 1861 ++++++++++++++++++++++++++++++++++++++++
2026-10-17 23:37:26,024 [ scc.git] DEBUG package-lock.json | 263 +++++-
2026-10-17 23:37:26,024 [ scc.git] DEBUG package.json | 3 +-
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/css/figure.css | 9 +
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/index.html | 11 +
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/export/figure_to_pdf.js | 1164 +++++++++++++++++++++++++
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/models/figure_model.js | 44 +-
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/models/panel_model.js | 137 ++-
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/models/zarr_utils.js | 10 +-
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/views/figure_view.js | 178 ++--
2026-10-17 23:37:26,024 [ scc.git] DEBUG src/js/views/panel_view.js | 20 +-
2026-10-17 23:37:26,024 [ scc.git] DEBUG 11 files changed, 3582 insertions(+), 118 deletions(-)
2026-10-17 23:37:26,024 [ scc.git] DEBUG create mode 100644 ome_figure/export_script.py
2026-10-17 23:37:26,024 [ scc.git] DEBUG create mode 100644 src/js/export/figure_to_pdf.js
2026-10-17 23:37:26,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:26,214 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee7ef68e92851305e84f793e1301b6a97fc7200'
2026-10-17 23:37:26,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:26,324 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`) 2ee7ef68e92851305e84f793e1301b6a97fc7200'
2026-10-17 23:37:26,670 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:37:26,743 [ scc.git] DEBUG src/js/views/util.js | 24 +++++++++++++-----------
2026-10-17 23:37:26,743 [ scc.git] DEBUG 1 file changed, 13 insertions(+), 11 deletions(-)
2026-10-17 23:37:26,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:26,928 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:37:27,056 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:27,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:27,072 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:37:27,186 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:37:27,301 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b322d50> has no local changes
2026-10-17 23:37:27,301 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/figure
Excluded PRs:
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..e92b4e8
Previously merged:
- PR 20 will-moore 'Hide export dropdown unless omero'
- PR 19 Rdornier 'Fix rectangle crop'
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 12 will-moore 'Browser based export'
- PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:37:27,609 [ scc.git] DEBUG [detached HEAD 9446963] merge master -Dorg -Ssuccess-only
2026-10-17 23:37:27,612 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:37:27,612 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:37:27,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2
2026-10-17 23:37:27,839 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:27,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-17 23:37:27,839 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:27,839 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:27,856 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:27,877 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:27,877 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:27,900 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:27,986 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:27,986 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:37:27,986 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:27,987 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:28,007 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:37:28,122 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:28,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:28,140 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:37:28,251 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:37:28,330 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b340cd0> has no local changes
2026-10-17 23:37:28,331 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/minimal-omero-client
Already up to date.
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:37:28,666 [ scc.git] DEBUG [detached HEAD 856424d] merge master -Dorg -Ssuccess-only
2026-10-17 23:37:28,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:37:28,668 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:37:29,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None
2026-10-17 23:37:29,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None
2026-10-17 23:37:29,523 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:37:30,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:30,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:31,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:37:31,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:32,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:37:32,264 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:37:32,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None
2026-10-17 23:37:33,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None
2026-10-17 23:37:33,273 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:33,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-17 23:37:33,273 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:33,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:33,290 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:33,307 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:33,307 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:33,330 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:33,389 [ scc.git] DEBUG Already up to date.
2026-10-17 23:37:33,389 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head'
2026-10-17 23:37:33,811 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate
2026-10-17 23:37:33,811 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD
2026-10-17 23:37:33,837 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:37:33,837 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:33,837 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:33,853 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-10-17 23:37:33,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:33,891 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-10-17 23:37:34,083 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:37:34,143 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:37:34,143 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:37:34,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:34,322 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:37:34,442 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:34,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:34,456 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:37:34,563 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:37:34,609 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b31a810> has no local changes
2026-10-17 23:37:34,609 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:37:34,734 [ scc.git] DEBUG [detached HEAD ec0d0c8] merge master -Dorg -Ssuccess-only
2026-10-17 23:37:34,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:37:34,736 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:37:35,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None
2026-10-17 23:37:35,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None
2026-10-17 23:37:36,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None
2026-10-17 23:37:36,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:37,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:37,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:37:38,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:38,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:37:38,629 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate'
2026-10-17 23:37:39,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None
2026-10-17 23:37:39,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None
2026-10-17 23:37:39,640 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:39,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-17 23:37:39,641 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:39,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:39,656 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:39,671 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:39,671 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:39,691 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:39,838 [ scc.git] DEBUG Updating ce6e13c..68b7303
2026-10-17 23:37:40,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None
2026-10-17 23:37:41,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None
2026-10-17 23:37:42,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None
2026-10-17 23:37:43,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None
2026-10-17 23:37:43,188 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head'
2026-10-17 23:37:43,843 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render
2026-10-17 23:37:43,844 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD
2026-10-17 23:37:43,866 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:37:43,867 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:43,867 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:43,879 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-10-17 23:37:43,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:43,939 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-10-17 23:37:44,128 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py
2026-10-17 23:37:44,195 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:37:44,256 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++--------------------
2026-10-17 23:37:44,256 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-)
2026-10-17 23:37:44,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:37:44,445 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:37:44,568 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:44,568 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:44,582 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:37:44,684 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:37:44,734 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1ba010> has no local changes
2026-10-17 23:37:44,735 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:37:44,882 [ scc.git] DEBUG [detached HEAD 9979bf9] merge master -Dorg -Ssuccess-only
2026-10-17 23:37:44,883 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:37:44,883 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:37:45,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None
2026-10-17 23:37:45,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None
2026-10-17 23:37:46,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None
2026-10-17 23:37:46,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:47,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:47,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:37:48,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:48,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:49,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:50,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None
2026-10-17 23:37:50,059 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-10-17 23:37:50,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None
2026-10-17 23:37:51,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None
2026-10-17 23:37:51,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:52,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:52,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:37:53,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:53,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None
2026-10-17 23:37:54,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-17 23:37:54,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None
2026-10-17 23:37:54,986 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells'
2026-10-17 23:37:55,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None
2026-10-17 23:37:56,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None
2026-10-17 23:37:56,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None
2026-10-17 23:37:57,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None
2026-10-17 23:37:57,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None
2026-10-17 23:37:57,623 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:37:57,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-17 23:37:57,624 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:37:57,624 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:37:57,643 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:37:57,663 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:37:57,663 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:37:57,973 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:37:58,474 [ scc.git] DEBUG Updating 11d3587..d5f88d8
2026-10-17 23:37:59,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None
2026-10-17 23:37:59,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None
2026-10-17 23:38:00,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None
2026-10-17 23:38:01,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None
2026-10-17 23:38:02,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None
2026-10-17 23:38:03,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None
2026-10-17 23:38:04,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None
2026-10-17 23:38:04,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None
2026-10-17 23:38:05,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None
2026-10-17 23:38:06,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None
2026-10-17 23:38:07,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None
2026-10-17 23:38:08,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None
2026-10-17 23:38:09,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None
2026-10-17 23:38:09,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None
2026-10-17 23:38:10,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None
2026-10-17 23:38:11,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None
2026-10-17 23:38:12,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None
2026-10-17 23:38:12,457 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head'
2026-10-17 23:38:13,350 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-10-17 23:38:13,350 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD
2026-10-17 23:38:13,380 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head'
2026-10-17 23:38:13,962 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-10-17 23:38:13,962 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD
2026-10-17 23:38:13,994 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:38:13,994 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:38:13,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:38:14,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-17 23:38:14,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:38:14,125 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging README.rst
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-10-17 23:38:14,625 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-10-17 23:38:14,659 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:38:14,660 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:38:14,706 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-17 23:38:14,927 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-17 23:38:15,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:38:15,115 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-17 23:38:15,185 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-17 23:38:15,214 [ scc.git] INFO - PR 174 will-moore 'Skip wells'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- Upstream changes
- test/integration/clitest/test_export.py
- src/omero_zarr/raw_pixels.py
- src/omero_zarr/masks.py
- src/omero_zarr/cli.py
- src/omero_zarr/util.py
--conflicts
2026-10-17 23:38:15,231 [ scc.config] DEBUG Found github.token
2026-10-17 23:38:15,231 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts.
2026-10-17 23:38:15,231 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-17 23:38:15,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:38:15,317 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-17 23:38:15,612 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-10-17 23:38:15,612 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-10-17 23:38:15,612 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-10-17 23:38:15,613 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-10-17 23:38:15,638 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:38:15,639 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:38:15,671 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-17 23:38:15,823 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-17 23:38:16,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:38:16,023 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-17 23:38:16,093 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-17 23:38:16,121 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #174 will-moore 'Skip wells'
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
- Upstream changes
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
--conflicts
2026-10-17 23:38:16,131 [ scc.config] DEBUG Found github.token
2026-10-17 23:38:16,131 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts.
2026-10-17 23:38:16,131 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:38:16,247 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:38:16,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:38:16,263 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:38:16,373 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:38:16,434 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1ba850> has no local changes
2026-10-17 23:38:16,434 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:38:16,577 [ scc.git] DEBUG [detached HEAD 59b3071] merge master -Dorg -Ssuccess-only
2026-10-17 23:38:16,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:38:16,579 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:38:16,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None
2026-10-17 23:38:17,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711 HTTP/1.1" 200 None
2026-10-17 23:38:18,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711/comments HTTP/1.1" 200 None
2026-10-17 23:38:18,009 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:38:18,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:19,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:38:19,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:38:20,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:20,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/5affb9919bd08c4de17797109288085f666c6ad4?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:38:20,733 [ scc.repo] DEBUG - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-10-17 23:38:21,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/710 HTTP/1.1" 200 None
2026-10-17 23:38:21,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/710/comments HTTP/1.1" 200 None
2026-10-17 23:38:21,762 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:38:22,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:22,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:38:23,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:38:24,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:24,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/9ffbb2959a93d788f12be0c4452f030315926ab2?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:38:24,534 [ scc.repo] DEBUG - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
2026-10-17 23:38:25,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None
2026-10-17 23:38:25,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None
2026-10-17 23:38:26,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:26,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:38:27,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:38:27,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?page=1 HTTP/1.1" 200 None
2026-10-17 23:38:28,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:38:28,345 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration'
2026-10-17 23:38:28,345 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:38:28,345 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-17 23:38:28,346 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:38:28,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:38:28,365 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:38:28,397 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:38:28,397 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:38:29,561 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:38:31,098 [ scc.git] ERROR stderr (git merge --ff-only origin/master): Updating files: 98% (81/82)
Updating files: 100% (82/82)
Updating files: 100% (82/82), done.
2026-10-17 23:38:31,098 [ scc.git] DEBUG Updating 9cc36cde..3195c3df
2026-10-17 23:38:31,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None
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2026-10-17 23:39:19,407 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head'
2026-10-17 23:39:19,980 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-10-17 23:39:19,980 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD
2026-10-17 23:39:20,010 [ scc.git] DEBUG Calling 'git fetch origin pull/710/head'
2026-10-17 23:39:20,482 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-10-17 23:39:20,482 [ scc.git] DEBUG * branch refs/pull/710/head -> FETCH_HEAD
2026-10-17 23:39:20,514 [ scc.git] DEBUG Calling 'git fetch origin pull/711/head'
2026-10-17 23:39:20,979 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-10-17 23:39:20,979 [ scc.git] DEBUG * branch refs/pull/711/head -> FETCH_HEAD
2026-10-17 23:39:21,008 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:39:21,009 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:21,009 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:21,021 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64'
2026-10-17 23:39:21,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:21,231 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64'
2026-10-17 23:39:22,053 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:39:22,160 [ scc.git] DEBUG .bumpversion.cfg | 4 +-
2026-10-17 23:39:22,160 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 +
2026-10-17 23:39:22,160 [ scc.git] DEBUG .github/workflows/pages.yml | 28 -
2026-10-17 23:39:22,160 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +
2026-10-17 23:39:22,160 [ scc.git] DEBUG .gitignore | 7 +-
2026-10-17 23:39:22,160 [ scc.git] DEBUG .gitmodules | 3 +
2026-10-17 23:39:22,160 [ scc.git] DEBUG .omeroci/app-srv | 4 +-
2026-10-17 23:39:22,160 [ scc.git] DEBUG README.rst | 76 +-
2026-10-17 23:39:22,161 [ scc.git] DEBUG deploy_build.sh | 21 +-
2026-10-17 23:39:22,161 [ scc.git] DEBUG deploy_ghpages.sh | 1 +
2026-10-17 23:39:22,161 [ scc.git] DEBUG figure | 1 +
2026-10-17 23:39:22,161 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0
2026-10-17 23:39:22,161 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0
2026-10-17 23:39:22,161 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 --------------------
2026-10-17 23:39:22,161 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0
2026-10-17 23:39:22,161 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 8441 -> 0 bytes
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2026-10-17 23:39:22,161 [ scc.git] DEBUG omero_figure/views.py | 52 +-
2026-10-17 23:39:22,161 [ scc.git] DEBUG package-lock.json | 1499 --------
2026-10-17 23:39:22,161 [ scc.git] DEBUG package.json | 51 -
2026-10-17 23:39:22,161 [ scc.git] DEBUG setup.py | 8 +
2026-10-17 23:39:22,161 [ scc.git] DEBUG src/css/figure.css | 1551 ---------
2026-10-17 23:39:22,161 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 -
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2026-10-17 23:39:22,161 [ scc.git] DEBUG src/js/main.js | 189 --
2026-10-17 23:39:22,161 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 --------
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2026-10-17 23:39:22,161 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ------
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2026-10-17 23:39:22,161 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 -------
2026-10-17 23:39:22,161 [ scc.git] DEBUG src/js/views/files.js | 374 --
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2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/rois_form.template.html | 246 --
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2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/scalebar_panel.template.html | 10 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/shapes/shape_item_template.html | 12 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 56 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 226 --
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/viewport.template.html | 5 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG src/test.html | 25 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG vite.config.js | 32 -
2026-10-17 23:39:22,162 [ scc.git] DEBUG 122 files changed, 115 insertions(+), 29753 deletions(-)
2026-10-17 23:39:22,162 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml
2026-10-17 23:39:22,162 [ scc.git] DEBUG create mode 100644 .gitmodules
2026-10-17 23:39:22,162 [ scc.git] DEBUG create mode 160000 figure
2026-10-17 23:39:22,162 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/__init__.py
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2026-10-17 23:39:22,162 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm
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2026-10-17 23:39:22,162 [ scc.git] DEBUG delete mode 100644 src/css/figure.css
2026-10-17 23:39:22,162 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html
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2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/index.html
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/main.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/models/figure_model.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/models/panel_model.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/models/roi_model.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/models/undo.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/models/zarr_utils.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/shapeEditorTest.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/ellipse.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/line.js
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2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/lutpicker.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/modal_views.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/open_local_file_modal.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/panel_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/raphael-rect.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/right_panel_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_loader_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_modal_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/scalebar_form_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/svg_model_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/util.csrf.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html
2026-10-17 23:39:22,163 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html
2026-10-17 23:39:22,198 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100644 src/test.html
2026-10-17 23:39:22,199 [ scc.git] DEBUG delete mode 100755 vite.config.js
2026-10-17 23:39:22,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:22,412 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9ffbb2959a93d788f12be0c4452f030315926ab2'
2026-10-17 23:39:22,488 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:22,505 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 710 (Bump dompurify from 3.4.13 to 3.4.16) 9ffbb2959a93d788f12be0c4452f030315926ab2'
2026-10-17 23:39:22,726 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package-lock.json left in tree.
2026-10-17 23:39:22,726 [ scc.git] DEBUG CONFLICT (modify/delete): package.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package.json left in tree.
2026-10-17 23:39:22,753 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:39:22,757 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:39:22,790 [ scc.git] DEBUG Calling 'git reset --hard 871b4a29fa7ec50846d416240a6f4e2d1967f847'
2026-10-17 23:39:22,941 [ scc.git] DEBUG HEAD is now at 871b4a29 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration)
2026-10-17 23:39:23,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:23,128 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 9ffbb2959a93d788f12be0c4452f030315926ab2'
2026-10-17 23:39:23,168 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147'
2026-10-17 23:39:23,199 [ scc.git] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #706 will-moore 'Figure repo migration'
- package-lock.json
- package.json
--conflicts
2026-10-17 23:39:23,212 [ scc.config] DEBUG Found github.token
2026-10-17 23:39:23,212 [ scc.git] DEBUG Not adding comment to issue #710, already --conflicts.
2026-10-17 23:39:23,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5affb9919bd08c4de17797109288085f666c6ad4'
2026-10-17 23:39:23,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:23,277 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 711 (Bump source-map-js from 1.2.1 to 1.2.2) 5affb9919bd08c4de17797109288085f666c6ad4'
2026-10-17 23:39:23,449 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 5affb9919bd08c4de17797109288085f666c6ad4. Version 5affb9919bd08c4de17797109288085f666c6ad4 of package-lock.json left in tree.
2026-10-17 23:39:23,481 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:39:23,487 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:39:23,521 [ scc.git] DEBUG Calling 'git reset --hard 871b4a29fa7ec50846d416240a6f4e2d1967f847'
2026-10-17 23:39:23,661 [ scc.git] DEBUG HEAD is now at 871b4a29 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration)
2026-10-17 23:39:23,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:23,838 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 5affb9919bd08c4de17797109288085f666c6ad4'
2026-10-17 23:39:23,872 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147'
2026-10-17 23:39:23,900 [ scc.git] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #706 will-moore 'Figure repo migration'
- package-lock.json
- PR #710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
- package-lock.json
--conflicts
2026-10-17 23:39:23,911 [ scc.config] DEBUG Found github.token
2026-10-17 23:39:23,911 [ scc.git] DEBUG Not adding comment to issue #711, already --conflicts.
2026-10-17 23:39:23,911 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:39:24,018 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:24,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:24,030 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:39:24,156 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:39:24,240 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1c0290> has no local changes
2026-10-17 23:39:24,241 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Conflicting PRs (not included):
- PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
- PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:39:24,391 [ scc.git] DEBUG [detached HEAD 333f1369] merge master -Dorg -Ssuccess-only
2026-10-17 23:39:24,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:39:24,395 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:39:24,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None
2026-10-17 23:39:25,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None
2026-10-17 23:39:25,244 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:25,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:26,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:27,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:39:27,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:27,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:27,966 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:39:28,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None
2026-10-17 23:39:28,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None
2026-10-17 23:39:29,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:30,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:30,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:30,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:30,979 [ scc.repo] DEBUG - PR 18 jburel 'default size z value'
2026-10-17 23:39:30,979 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:39:30,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-17 23:39:30,980 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:30,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:31,007 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:39:31,024 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:39:31,025 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:39:31,047 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:39:31,107 [ scc.git] DEBUG Already up to date.
2026-10-17 23:39:31,108 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head'
2026-10-17 23:39:31,580 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-10-17 23:39:31,580 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD
2026-10-17 23:39:31,612 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head'
2026-10-17 23:39:32,012 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-10-17 23:39:32,012 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD
2026-10-17 23:39:32,035 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:39:32,035 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:32,035 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:32,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-10-17 23:39:32,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:32,092 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-10-17 23:39:32,249 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py
2026-10-17 23:39:32,320 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:39:32,380 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++
2026-10-17 23:39:32,380 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2026-10-17 23:39:32,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:32,569 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-10-17 23:39:32,600 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:32,616 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-10-17 23:39:32,812 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:39:32,879 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:39:32,879 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:39:33,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:33,069 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:39:33,204 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:33,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:33,217 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:39:33,320 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:39:33,367 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1c2910> has no local changes
2026-10-17 23:39:33,367 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:39:33,502 [ scc.git] DEBUG [detached HEAD 42ca871] merge master -Dorg -Ssuccess-only
2026-10-17 23:39:33,504 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:39:33,504 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:39:33,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None
2026-10-17 23:39:34,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None
2026-10-17 23:39:34,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None
2026-10-17 23:39:35,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None
2026-10-17 23:39:35,332 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:35,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:36,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:37,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:37,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:37,549 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-10-17 23:39:38,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None
2026-10-17 23:39:38,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None
2026-10-17 23:39:39,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None
2026-10-17 23:39:39,109 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:39,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:40,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:40,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:41,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:41,235 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-10-17 23:39:41,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None
2026-10-17 23:39:41,753 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:42,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:42,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:43,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:43,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:43,843 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-10-17 23:39:44,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None
2026-10-17 23:39:44,351 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:44,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:45,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:45,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:46,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:46,416 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-10-17 23:39:46,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None
2026-10-17 23:39:47,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None
2026-10-17 23:39:47,424 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:48,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:48,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:49,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:49,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:49,509 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-10-17 23:39:50,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None
2026-10-17 23:39:50,030 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:50,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:51,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:51,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:52,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:52,105 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-10-17 23:39:52,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None
2026-10-17 23:39:52,644 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:39:53,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:53,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:39:54,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-10-17 23:39:54,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:39:54,753 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-10-17 23:39:54,753 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:39:54,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-17 23:39:54,755 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:54,755 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:54,773 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:39:54,791 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:39:54,791 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:39:54,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:39:54,866 [ scc.git] DEBUG Already up to date.
2026-10-17 23:39:54,867 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head'
2026-10-17 23:39:55,304 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:55,304 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD
2026-10-17 23:39:55,334 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head'
2026-10-17 23:39:55,730 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:55,730 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD
2026-10-17 23:39:55,755 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head'
2026-10-17 23:39:56,157 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:56,157 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD
2026-10-17 23:39:56,182 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head'
2026-10-17 23:39:56,588 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:56,588 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD
2026-10-17 23:39:56,610 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head'
2026-10-17 23:39:57,010 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:57,010 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD
2026-10-17 23:39:57,037 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head'
2026-10-17 23:39:57,429 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:57,429 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD
2026-10-17 23:39:57,455 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head'
2026-10-17 23:39:57,852 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-17 23:39:57,852 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD
2026-10-17 23:39:57,874 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:39:57,874 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:39:57,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:57,891 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-10-17 23:39:57,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:57,932 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-10-17 23:39:58,156 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:39:58,233 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-10-17 23:39:58,233 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-10-17 23:39:58,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:58,403 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-10-17 23:39:58,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:58,443 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-10-17 23:39:58,622 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:39:58,697 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:39:58,768 [ scc.git] DEBUG package-lock.json | 625 +++---------------------------------------------------
2026-10-17 23:39:58,769 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-)
2026-10-17 23:39:58,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:58,961 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-17 23:39:58,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:59,007 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-17 23:39:59,217 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:39:59,217 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-17 23:39:59,242 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:39:59,243 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:39:59,277 [ scc.git] DEBUG Calling 'git reset --hard d049a89ba6ee8140c464ece6ab48138b3e21dbfc'
2026-10-17 23:39:59,463 [ scc.git] DEBUG HEAD is now at d049a89 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents)
2026-10-17 23:39:59,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:39:59,682 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-17 23:39:59,707 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-17 23:39:59,727 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
--conflicts
2026-10-17 23:39:59,740 [ scc.config] DEBUG Found github.token
2026-10-17 23:39:59,740 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts.
2026-10-17 23:39:59,740 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-10-17 23:39:59,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:39:59,781 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-10-17 23:39:59,988 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:40:00,070 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:40:00,166 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++-----
2026-10-17 23:40:00,166 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-)
2026-10-17 23:40:00,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:40:00,354 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-10-17 23:40:00,387 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:40:00,400 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-10-17 23:40:00,585 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:40:00,682 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:40:00,753 [ scc.git] DEBUG package-lock.json | 6 +++---
2026-10-17 23:40:00,753 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-10-17 23:40:00,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:40:00,942 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-17 23:40:00,977 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:40:00,989 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-17 23:40:01,153 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:40:01,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-17 23:40:01,176 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:40:01,178 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:40:01,211 [ scc.git] DEBUG Calling 'git reset --hard 0b3563326612196ae576314146bf02bc1b234f6b'
2026-10-17 23:40:01,408 [ scc.git] DEBUG HEAD is now at 0b35633 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-10-17 23:40:01,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:40:01,607 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-17 23:40:01,631 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-17 23:40:01,650 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
--conflicts
2026-10-17 23:40:01,661 [ scc.config] DEBUG Found github.token
2026-10-17 23:40:01,661 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts.
2026-10-17 23:40:01,661 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-17 23:40:01,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:40:01,702 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-17 23:40:01,876 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:40:01,876 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-17 23:40:01,900 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:40:01,901 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:40:01,936 [ scc.git] DEBUG Calling 'git reset --hard 0b3563326612196ae576314146bf02bc1b234f6b'
2026-10-17 23:40:02,092 [ scc.git] DEBUG HEAD is now at 0b35633 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-10-17 23:40:02,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:40:02,285 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-17 23:40:02,311 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-17 23:40:02,328 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
- PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- package-lock.json
--conflicts
2026-10-17 23:40:02,366 [ scc.config] DEBUG Found github.token
2026-10-17 23:40:02,366 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts.
2026-10-17 23:40:02,366 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:40:02,486 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:40:02,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:40:02,498 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:40:02,607 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:40:02,677 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b369ed0> has no local changes
2026-10-17 23:40:02,677 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:40:02,861 [ scc.git] DEBUG [detached HEAD 27c40c5] merge master -Dorg -Ssuccess-only
2026-10-17 23:40:02,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:40:02,866 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:40:03,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None
2026-10-17 23:40:03,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/578 HTTP/1.1" 200 None
2026-10-17 23:40:03,751 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:40:04,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/18b4b5d8439f0858ad6cecd4768415361d916a07?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:05,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/18b4b5d8439f0858ad6cecd4768415361d916a07/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:05,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/18b4b5d8439f0858ad6cecd4768415361d916a07/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:06,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/18b4b5d8439f0858ad6cecd4768415361d916a07?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:06,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/18b4b5d8439f0858ad6cecd4768415361d916a07?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:06,574 [ scc.repo] DEBUG - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
2026-10-17 23:40:07,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/577 HTTP/1.1" 200 None
2026-10-17 23:40:07,141 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:40:07,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/292b157ca7c18c6ededfbc88968e5196152d6e90?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:08,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/292b157ca7c18c6ededfbc88968e5196152d6e90/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:08,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/292b157ca7c18c6ededfbc88968e5196152d6e90/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:09,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/292b157ca7c18c6ededfbc88968e5196152d6e90?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:09,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/292b157ca7c18c6ededfbc88968e5196152d6e90?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:09,792 [ scc.repo] DEBUG - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-10-17 23:40:10,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/576 HTTP/1.1" 200 None
2026-10-17 23:40:10,301 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:40:10,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:11,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:11,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:12,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:12,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:12,940 [ scc.repo] DEBUG - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
2026-10-17 23:40:13,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/575 HTTP/1.1" 200 None
2026-10-17 23:40:13,461 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:40:14,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/4ddedf56363e4aa62eadf867f45009d981148e9a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:14,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/4ddedf56363e4aa62eadf867f45009d981148e9a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:15,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/4ddedf56363e4aa62eadf867f45009d981148e9a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:15,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/4ddedf56363e4aa62eadf867f45009d981148e9a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:16,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/4ddedf56363e4aa62eadf867f45009d981148e9a?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:16,163 [ scc.repo] DEBUG - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
2026-10-17 23:40:16,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None
2026-10-17 23:40:17,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None
2026-10-17 23:40:17,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:18,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:18,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:19,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:19,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:19,917 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers'
2026-10-17 23:40:20,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None
2026-10-17 23:40:20,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None
2026-10-17 23:40:21,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b35266077606b1a20e2e49f22c50767a2a2df02d?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:22,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b35266077606b1a20e2e49f22c50767a2a2df02d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:22,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b35266077606b1a20e2e49f22c50767a2a2df02d/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:40:23,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b35266077606b1a20e2e49f22c50767a2a2df02d?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:23,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b35266077606b1a20e2e49f22c50767a2a2df02d?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:23,471 [ scc.repo] DEBUG - PR 497 will-moore 'ROI Tags'
2026-10-17 23:40:24,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None
2026-10-17 23:40:24,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None
2026-10-17 23:40:25,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:25,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:40:26,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-10-17 23:40:26,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:40:26,547 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip'
2026-10-17 23:40:26,547 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:40:26,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-17 23:40:26,548 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:40:26,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:40:26,571 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:40:26,603 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:40:26,604 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:40:27,985 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:40:28,899 [ scc.git] DEBUG Updating 7a798cee..0a836211
2026-10-17 23:40:29,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 None
2026-10-17 23:40:30,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 None
2026-10-17 23:40:31,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 None
2026-10-17 23:40:32,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 None
2026-10-17 23:40:32,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 None
2026-10-17 23:40:33,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 None
2026-10-17 23:40:34,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 None
2026-10-17 23:40:35,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 None
2026-10-17 23:40:35,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 None
2026-10-17 23:40:36,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 None
2026-10-17 23:40:37,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None
2026-10-17 23:40:38,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None
2026-10-17 23:40:39,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None
2026-10-17 23:40:40,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None
2026-10-17 23:40:40,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None
2026-10-17 23:40:41,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None
2026-10-17 23:40:42,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None
2026-10-17 23:40:43,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None
2026-10-17 23:40:44,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None
2026-10-17 23:40:44,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None
2026-10-17 23:40:45,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None
2026-10-17 23:40:46,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None
2026-10-17 23:40:47,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None
2026-10-17 23:40:48,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None
2026-10-17 23:40:48,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None
2026-10-17 23:40:49,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None
2026-10-17 23:40:50,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None
2026-10-17 23:40:51,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None
2026-10-17 23:40:51,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None
2026-10-17 23:40:52,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None
2026-10-17 23:40:53,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None
2026-10-17 23:40:54,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None
2026-10-17 23:40:55,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None
2026-10-17 23:40:56,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None
2026-10-17 23:40:56,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None
2026-10-17 23:40:57,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None
2026-10-17 23:40:58,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None
2026-10-17 23:40:59,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None
2026-10-17 23:41:00,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None
2026-10-17 23:41:00,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None
2026-10-17 23:41:01,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None
2026-10-17 23:41:02,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None
2026-10-17 23:41:03,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None
2026-10-17 23:41:04,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None
2026-10-17 23:41:04,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None
2026-10-17 23:41:05,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None
2026-10-17 23:41:06,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None
2026-10-17 23:41:07,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None
2026-10-17 23:41:08,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None
2026-10-17 23:41:09,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None
2026-10-17 23:41:09,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None
2026-10-17 23:41:10,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None
2026-10-17 23:41:10,804 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2026-10-17 23:41:11,523 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:11,523 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2026-10-17 23:41:11,550 [ scc.git] DEBUG Calling 'git fetch origin pull/497/head'
2026-10-17 23:41:12,169 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:12,169 [ scc.git] DEBUG * branch refs/pull/497/head -> FETCH_HEAD
2026-10-17 23:41:12,195 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head'
2026-10-17 23:41:12,795 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:12,795 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD
2026-10-17 23:41:12,822 [ scc.git] DEBUG Calling 'git fetch origin pull/575/head'
2026-10-17 23:41:13,364 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:13,364 [ scc.git] DEBUG * branch refs/pull/575/head -> FETCH_HEAD
2026-10-17 23:41:13,392 [ scc.git] DEBUG Calling 'git fetch origin pull/576/head'
2026-10-17 23:41:13,904 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:13,905 [ scc.git] DEBUG * branch refs/pull/576/head -> FETCH_HEAD
2026-10-17 23:41:13,934 [ scc.git] DEBUG Calling 'git fetch origin pull/577/head'
2026-10-17 23:41:14,469 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:14,469 [ scc.git] DEBUG * branch refs/pull/577/head -> FETCH_HEAD
2026-10-17 23:41:14,499 [ scc.git] DEBUG Calling 'git fetch origin pull/578/head'
2026-10-17 23:41:15,027 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-17 23:41:15,028 [ scc.git] DEBUG * branch refs/pull/578/head -> FETCH_HEAD
2026-10-17 23:41:15,052 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:41:15,052 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:15,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:15,068 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2026-10-17 23:41:15,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:15,177 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2026-10-17 23:41:15,508 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2026-10-17 23:41:15,582 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:15,653 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2026-10-17 23:41:15,653 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2026-10-17 23:41:15,653 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2026-10-17 23:41:15,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:15,856 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b35266077606b1a20e2e49f22c50767a2a2df02d'
2026-10-17 23:41:15,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:15,965 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 497 (ROI Tags) b35266077606b1a20e2e49f22c50767a2a2df02d'
2026-10-17 23:41:16,401 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:16,499 [ scc.git] DEBUG css/app.css | 55 ++++-
2026-10-17 23:41:16,499 [ scc.git] DEBUG css/images/tag_icon.png | Bin 0 -> 1414 bytes
2026-10-17 23:41:16,499 [ scc.git] DEBUG css/images/tagset_icon.png | Bin 0 -> 3299 bytes
2026-10-17 23:41:16,499 [ scc.git] DEBUG plugin/omero_iviewer/urls.py | 2 +
2026-10-17 23:41:16,499 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 107 +++++++++
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/events/events.js | 4 +
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/model/image_info.js | 8 +
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/regions/regions-list.html | 28 ++-
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/regions/regions-list.js | 162 ++++++++++++-
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/regions/regions-tags.html | 172 ++++++++++++++
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/regions/regions-tags.js | 511 ++++++++++++++++++++++++++++++++++++++++++
2026-10-17 23:41:16,499 [ scc.git] DEBUG src/regions/regions.html | 2 +
2026-10-17 23:41:16,499 [ scc.git] DEBUG 12 files changed, 1043 insertions(+), 8 deletions(-)
2026-10-17 23:41:16,499 [ scc.git] DEBUG create mode 100644 css/images/tag_icon.png
2026-10-17 23:41:16,499 [ scc.git] DEBUG create mode 100644 css/images/tagset_icon.png
2026-10-17 23:41:16,499 [ scc.git] DEBUG create mode 100644 src/regions/regions-tags.html
2026-10-17 23:41:16,499 [ scc.git] DEBUG create mode 100644 src/regions/regions-tags.js
2026-10-17 23:41:16,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:16,700 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-17 23:41:16,812 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:16,826 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging css/app.css
2026-10-17 23:41:17,771 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:41:17,771 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging package.json
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging src/app/context.js
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging src/events/events.js
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging src/model/image_config.js
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js
2026-10-17 23:41:17,771 [ scc.git] DEBUG Auto-merging webpack.dev.config.js
2026-10-17 23:41:17,793 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:41:17,799 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:41:17,896 [ scc.git] DEBUG Calling 'git reset --hard 18a46311d738e694da6db732dc4ee9d3c2bbcc27'
2026-10-17 23:41:18,275 [ scc.git] DEBUG HEAD is now at 18a46311 merge master -Dorg -Ssuccess-only: PR 497 (ROI Tags)
2026-10-17 23:41:18,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:18,461 [ scc.git] DEBUG Calling 'git merge-base 0a836211ba48a84aff07486e3d18cfe9c5f52e76 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-17 23:41:18,549 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..0a836211ba48a84aff07486e3d18cfe9c5f52e76'
2026-10-17 23:41:18,590 [ scc.git] INFO - PR 532 will-moore 'Zarr layers'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #497 will-moore 'ROI Tags'
- css/app.css
- Upstream changes
- css/app.css
- package-lock.json
--conflicts
2026-10-17 23:41:18,602 [ scc.config] DEBUG Found github.token
2026-10-17 23:41:18,602 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts.
2026-10-17 23:41:18,602 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4ddedf56363e4aa62eadf867f45009d981148e9a'
2026-10-17 23:41:18,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:18,719 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 575 (Bump proxy-addr from 2.0.7 to 2.0.8) 4ddedf56363e4aa62eadf867f45009d981148e9a'
2026-10-17 23:41:19,119 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:19,200 [ scc.git] DEBUG package-lock.json | 17 +++++++++++------
2026-10-17 23:41:19,200 [ scc.git] DEBUG 1 file changed, 11 insertions(+), 6 deletions(-)
2026-10-17 23:41:19,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:19,390 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a'
2026-10-17 23:41:19,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:19,514 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 576 (Bump shell-quote from 1.10.0 to 1.12.0) e25a51e2c4b97d7ea89690a529a1a812ce7c9a6a'
2026-10-17 23:41:19,775 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:41:19,850 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:19,934 [ scc.git] DEBUG package-lock.json | 13 +++++++------
2026-10-17 23:41:19,934 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 6 deletions(-)
2026-10-17 23:41:20,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:20,123 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...292b157ca7c18c6ededfbc88968e5196152d6e90'
2026-10-17 23:41:20,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:20,252 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 577 (Bump source-map-js from 1.2.1 to 1.2.2) 292b157ca7c18c6ededfbc88968e5196152d6e90'
2026-10-17 23:41:20,559 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:41:20,625 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:20,703 [ scc.git] DEBUG package-lock.json | 13 +++++++------
2026-10-17 23:41:20,703 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 6 deletions(-)
2026-10-17 23:41:20,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:20,927 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...18b4b5d8439f0858ad6cecd4768415361d916a07'
2026-10-17 23:41:21,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:21,058 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 578 (Bump compression from 1.8.1 to 1.8.2) 18b4b5d8439f0858ad6cecd4768415361d916a07'
2026-10-17 23:41:21,350 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:41:21,411 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:21,487 [ scc.git] DEBUG package-lock.json | 19 +++++++++++++------
2026-10-17 23:41:21,487 [ scc.git] DEBUG 1 file changed, 13 insertions(+), 6 deletions(-)
2026-10-17 23:41:21,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:21,705 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:41:21,829 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:21,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:21,841 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:41:21,947 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:41:22,106 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1d3d50> has no local changes
2026-10-17 23:41:22,107 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..0a836211
Previously merged:
- PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
- PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
- PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
- PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
- PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
- PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 497 will-moore 'ROI Tags'
- PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
- PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
- PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
- PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:41:22,310 [ scc.git] DEBUG [detached HEAD abb66e14] merge master -Dorg -Ssuccess-only
2026-10-17 23:41:22,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:41:22,315 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:41:22,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-10-17 23:41:23,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None
2026-10-17 23:41:23,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None
2026-10-17 23:41:23,767 [ scc.repo] DEBUG # ... Include label: include
2026-10-17 23:41:24,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:24,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:25,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:25,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:25,744 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys'
2026-10-17 23:41:26,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None
2026-10-17 23:41:26,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None
2026-10-17 23:41:26,771 [ scc.repo] DEBUG # ... Include label: include
2026-10-17 23:41:27,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:27,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:28,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:28,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:28,847 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-10-17 23:41:29,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-10-17 23:41:29,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-10-17 23:41:29,867 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:41:30,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:31,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:31,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:41:32,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:32,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:32,663 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:41:33,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-10-17 23:41:33,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:34,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:34,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:35,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:35,136 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:41:35,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-10-17 23:41:36,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-10-17 23:41:36,181 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:41:36,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-17 23:41:36,182 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:36,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:36,203 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:41:36,222 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:41:36,223 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:41:36,246 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:41:36,300 [ scc.git] DEBUG Already up to date.
2026-10-17 23:41:36,300 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-10-17 23:41:36,820 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-17 23:41:36,820 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-10-17 23:41:36,846 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-10-17 23:41:37,247 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-17 23:41:37,247 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-10-17 23:41:37,279 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head'
2026-10-17 23:41:37,816 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-17 23:41:37,816 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD
2026-10-17 23:41:37,841 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head'
2026-10-17 23:41:38,301 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-17 23:41:38,301 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD
2026-10-17 23:41:38,326 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:41:38,326 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:38,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:38,341 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-10-17 23:41:38,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:38,383 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-10-17 23:41:38,584 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:38,647 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:41:38,647 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:41:38,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:38,822 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-17 23:41:38,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:38,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-17 23:41:39,046 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-10-17 23:41:39,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-10-17 23:41:39,069 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:41:39,071 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:41:39,096 [ scc.git] DEBUG Calling 'git reset --hard 527e139ba174d6a346c61448ef766090f65937d3'
2026-10-17 23:41:39,239 [ scc.git] DEBUG HEAD is now at 527e139 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-10-17 23:41:39,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:39,425 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-17 23:41:39,449 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-10-17 23:41:39,468 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-10-17 23:41:39,479 [ scc.config] DEBUG Found github.token
2026-10-17 23:41:39,479 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-10-17 23:41:39,479 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28'
2026-10-17 23:41:39,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:39,534 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28'
2026-10-17 23:41:39,798 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:39,870 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++-
2026-10-17 23:41:39,870 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-)
2026-10-17 23:41:40,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:40,067 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783'
2026-10-17 23:41:40,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:40,129 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783'
2026-10-17 23:41:40,397 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-10-17 23:41:40,465 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:40,543 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++---
2026-10-17 23:41:40,543 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-)
2026-10-17 23:41:40,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:40,739 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:41:40,854 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:40,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:40,869 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:41:40,977 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:41:41,038 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a191090> has no local changes
2026-10-17 23:41:41,038 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:41:41,178 [ scc.git] DEBUG [detached HEAD d251cc8] merge master -Dorg -Ssuccess-only
2026-10-17 23:41:41,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:41:41,180 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:41:41,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-10-17 23:41:42,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-10-17 23:41:42,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-10-17 23:41:43,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:43,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:44,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:44,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:44,708 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-10-17 23:41:45,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-10-17 23:41:45,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-10-17 23:41:46,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:46,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:47,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:47,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:47,798 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-10-17 23:41:47,798 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:41:47,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-17 23:41:47,799 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:47,799 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:47,819 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:41:47,838 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:41:47,838 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:41:47,913 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:41:48,252 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-10-17 23:41:48,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-10-17 23:41:49,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-10-17 23:41:50,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-10-17 23:41:50,455 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-10-17 23:41:51,197 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-10-17 23:41:51,197 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-10-17 23:41:51,229 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-10-17 23:41:51,670 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-10-17 23:41:51,670 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-10-17 23:41:51,696 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:41:51,696 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:51,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:51,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-17 23:41:51,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:51,793 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-17 23:41:52,038 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-10-17 23:41:52,038 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-10-17 23:41:52,039 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-10-17 23:41:52,059 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:41:52,060 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:41:52,094 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-10-17 23:41:52,231 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-10-17 23:41:52,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:52,413 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-17 23:41:52,465 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-10-17 23:41:52,492 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-10-17 23:41:52,506 [ scc.config] DEBUG Found github.token
2026-10-17 23:41:52,506 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-10-17 23:41:52,506 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-10-17 23:41:52,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:52,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-10-17 23:41:52,824 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:41:52,908 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-10-17 23:41:52,910 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-10-17 23:41:53,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:41:53,104 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:41:53,224 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:41:53,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:41:53,237 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:41:53,342 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:41:53,398 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a20cd90> has no local changes
2026-10-17 23:41:53,398 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:41:53,514 [ scc.git] DEBUG [detached HEAD 789f267] merge master -Dorg -Ssuccess-only
2026-10-17 23:41:53,516 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:41:53,516 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:41:53,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-10-17 23:41:54,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-10-17 23:41:55,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:55,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:56,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:56,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:56,461 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:41:57,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-10-17 23:41:57,004 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:41:57,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:58,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:41:58,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-10-17 23:41:59,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:41:59,095 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-10-17 23:41:59,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-10-17 23:41:59,618 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:00,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:00,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:01,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:01,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:01,705 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-10-17 23:42:02,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-10-17 23:42:02,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-10-17 23:42:03,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-10-17 23:42:03,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-10-17 23:42:04,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-10-17 23:42:04,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-10-17 23:42:05,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-10-17 23:42:05,210 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:05,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-17 23:42:05,212 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:05,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:05,240 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:05,260 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:05,260 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:05,283 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:05,342 [ scc.git] DEBUG Already up to date.
2026-10-17 23:42:05,342 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-10-17 23:42:05,750 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-17 23:42:05,750 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-10-17 23:42:05,774 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-10-17 23:42:06,171 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-17 23:42:06,171 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-10-17 23:42:06,195 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-10-17 23:42:06,684 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-17 23:42:06,684 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-10-17 23:42:06,709 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:06,709 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:06,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:06,724 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-10-17 23:42:06,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:06,759 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-10-17 23:42:06,988 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:07,068 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-10-17 23:42:07,068 [ scc.git] DEBUG package.json | 2 +-
2026-10-17 23:42:07,068 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-10-17 23:42:07,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:07,258 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-10-17 23:42:07,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:07,301 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-10-17 23:42:07,510 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-17 23:42:07,510 [ scc.git] DEBUG Auto-merging package.json
2026-10-17 23:42:07,580 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:07,639 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-10-17 23:42:07,639 [ scc.git] DEBUG package.json | 2 +-
2026-10-17 23:42:07,639 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-10-17 23:42:07,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:07,878 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-10-17 23:42:07,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:07,925 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-10-17 23:42:08,153 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:08,225 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:42:08,225 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:42:08,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:08,410 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:08,526 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:08,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:08,540 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:08,648 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:08,712 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a1e98d0> has no local changes
2026-10-17 23:42:08,713 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:08,860 [ scc.git] DEBUG [detached HEAD b925b27] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:08,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:08,862 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:09,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-10-17 23:42:09,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-10-17 23:42:09,682 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:10,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:10,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:11,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:42:12,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:12,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:12,445 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:42:12,445 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:12,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-17 23:42:12,446 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:12,446 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:12,466 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:12,488 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:12,489 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:12,513 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:12,584 [ scc.git] DEBUG Already up to date.
2026-10-17 23:42:12,584 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-10-17 23:42:13,014 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-10-17 23:42:13,014 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-10-17 23:42:13,042 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:13,042 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:13,042 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:13,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-10-17 23:42:13,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:13,096 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-10-17 23:42:13,273 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:13,329 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:42:13,329 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:42:13,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:13,522 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:13,640 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:13,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:13,653 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:13,759 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:13,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a224490> has no local changes
2026-10-17 23:42:13,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:13,942 [ scc.git] DEBUG [detached HEAD d98f26b] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:13,944 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:13,944 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:14,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-10-17 23:42:14,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-10-17 23:42:14,735 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:14,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-17 23:42:14,736 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:14,736 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:14,760 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:14,779 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:14,779 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:14,846 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:15,071 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-10-17 23:42:15,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-10-17 23:42:16,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-10-17 23:42:16,600 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:16,600 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:16,601 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:16,620 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:16,731 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:16,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:16,756 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:16,857 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:16,944 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a217a90> has no local changes
2026-10-17 23:42:16,944 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:17,109 [ scc.git] DEBUG [detached HEAD eff4abc] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:17,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:17,111 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:17,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-10-17 23:42:18,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-10-17 23:42:18,019 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:18,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:19,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:19,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:42:20,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:20,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:20,668 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:42:21,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-10-17 23:42:21,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-10-17 23:42:22,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:22,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:23,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:23,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:23,684 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-10-17 23:42:23,685 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:23,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-17 23:42:23,687 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:23,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:23,709 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:23,741 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:23,742 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:23,762 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:23,844 [ scc.git] DEBUG Already up to date.
2026-10-17 23:42:23,844 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-10-17 23:42:24,418 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-10-17 23:42:24,418 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-10-17 23:42:24,442 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-10-17 23:42:24,841 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-10-17 23:42:24,841 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-10-17 23:42:24,872 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:24,872 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:24,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:24,886 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-17 23:42:24,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:24,929 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-17 23:42:25,266 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG Auto-merging setup.py
2026-10-17 23:42:25,266 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-10-17 23:42:25,288 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:42:25,289 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:42:25,327 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-10-17 23:42:25,494 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-10-17 23:42:25,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:25,678 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-17 23:42:25,707 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-10-17 23:42:25,733 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2026-10-17 23:42:25,744 [ scc.config] DEBUG Found github.token
2026-10-17 23:42:25,744 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-10-17 23:42:25,744 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-10-17 23:42:25,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:25,780 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-10-17 23:42:25,955 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:26,015 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:42:26,015 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:42:26,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:26,198 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:26,315 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:26,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:26,327 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:26,434 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:26,507 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a21ab90> has no local changes
2026-10-17 23:42:26,507 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:26,629 [ scc.git] DEBUG [detached HEAD 6deafd8] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:26,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:26,631 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:26,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-10-17 23:42:27,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-10-17 23:42:28,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-10-17 23:42:28,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-10-17 23:42:29,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:29,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:30,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:30,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:30,525 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-10-17 23:42:30,526 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:30,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-17 23:42:30,527 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:30,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:30,566 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:30,584 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:30,584 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:30,606 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:30,771 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-10-17 23:42:31,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-10-17 23:42:32,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-10-17 23:42:32,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-10-17 23:42:32,985 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-10-17 23:42:33,524 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-10-17 23:42:33,524 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-10-17 23:42:33,546 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:33,546 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:33,546 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:33,558 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-10-17 23:42:33,589 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:33,600 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-10-17 23:42:33,895 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-10-17 23:42:33,969 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:34,035 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-10-17 23:42:34,036 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-10-17 23:42:34,036 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-10-17 23:42:34,036 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-10-17 23:42:34,036 [ scc.git] DEBUG ms/test | 2 ++
2026-10-17 23:42:34,036 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-10-17 23:42:34,036 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-10-17 23:42:34,036 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-10-17 23:42:34,036 [ scc.git] DEBUG create mode 100755 ms/test
2026-10-17 23:42:34,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:34,218 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:34,327 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:34,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:34,340 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:34,443 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:34,511 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b368390> has no local changes
2026-10-17 23:42:34,511 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:34,623 [ scc.git] DEBUG [detached HEAD d9c64c3] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:34,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:34,625 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:34,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-10-17 23:42:35,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-10-17 23:42:35,445 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:36,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:36,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:37,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:42:37,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:38,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:38,046 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:42:38,046 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:38,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-17 23:42:38,048 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:38,048 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:38,072 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:38,099 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:38,099 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:38,119 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:38,179 [ scc.git] DEBUG Already up to date.
2026-10-17 23:42:38,179 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-10-17 23:42:38,616 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-10-17 23:42:38,616 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-10-17 23:42:38,640 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:38,640 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:38,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:38,653 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-10-17 23:42:38,675 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:38,687 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-10-17 23:42:38,865 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:38,921 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:42:38,921 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:42:39,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:39,093 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:39,209 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:39,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:39,222 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:39,321 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:39,365 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095803cb90> has no local changes
2026-10-17 23:42:39,365 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:39,528 [ scc.git] DEBUG [detached HEAD 09f7f6a] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:39,530 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:39,531 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:39,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-10-17 23:42:40,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-10-17 23:42:40,372 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:40,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:41,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:42,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:42:42,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:43,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:43,088 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:42:43,088 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:43,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-17 23:42:43,091 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:43,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:43,115 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:42:43,133 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:43,133 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:42:43,191 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:42:43,397 [ scc.git] DEBUG Updating deab817..160d894
2026-10-17 23:42:43,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-10-17 23:42:43,980 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-10-17 23:42:44,405 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-10-17 23:42:44,405 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-10-17 23:42:44,428 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:44,428 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:44,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:44,439 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-10-17 23:42:44,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:44,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-10-17 23:42:44,635 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:44,704 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:42:44,704 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:42:44,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:44,881 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:45,007 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:45,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:45,019 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:45,120 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:45,175 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095804e0d0> has no local changes
2026-10-17 23:42:45,175 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:45,288 [ scc.git] DEBUG [detached HEAD dd393aa] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:45,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:45,290 [ scc.git] INFO Overriding base-branch from master to main
2026-10-17 23:42:45,290 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:45,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-10-17 23:42:46,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-10-17 23:42:46,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-10-17 23:42:47,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:47,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:48,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:42:48,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:49,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:49,221 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-10-17 23:42:49,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-10-17 23:42:50,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-10-17 23:42:50,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-10-17 23:42:51,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:51,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:52,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:52,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:42:52,773 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-10-17 23:42:52,773 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:42:52,773 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-17 23:42:52,774 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:52,775 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:52,797 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-10-17 23:42:52,815 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:42:52,815 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-10-17 23:42:52,837 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-10-17 23:42:52,997 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-10-17 23:42:53,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-10-17 23:42:54,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-10-17 23:42:54,448 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-10-17 23:42:54,973 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-10-17 23:42:54,973 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-10-17 23:42:54,994 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-10-17 23:42:55,670 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-10-17 23:42:55,670 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-10-17 23:42:55,694 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:42:55,694 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:55,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:55,707 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-17 23:42:55,734 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:55,746 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-17 23:42:56,019 [ scc.git] DEBUG Auto-merging README.rst
2026-10-17 23:42:56,019 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-10-17 23:42:56,019 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-10-17 23:42:56,019 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-10-17 23:42:56,037 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-17 23:42:56,038 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-17 23:42:56,069 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-10-17 23:42:56,199 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-10-17 23:42:56,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:56,376 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-17 23:42:56,400 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-10-17 23:42:56,419 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#114](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-10-17 23:42:56,431 [ scc.config] DEBUG Found github.token
2026-10-17 23:42:56,431 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-10-17 23:42:56,431 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-10-17 23:42:56,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:56,481 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-10-17 23:42:56,660 [ scc.git] DEBUG Auto-merging README.rst
2026-10-17 23:42:56,660 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-10-17 23:42:56,723 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:42:56,786 [ scc.git] DEBUG README.rst | 3 +
2026-10-17 23:42:56,786 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-10-17 23:42:56,786 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-10-17 23:42:56,786 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-10-17 23:42:56,786 [ scc.git] DEBUG setup.py | 5 +-
2026-10-17 23:42:56,786 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-10-17 23:42:56,786 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-10-17 23:42:56,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:42:56,991 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:42:57,113 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:42:57,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:42:57,125 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:42:57,245 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:42:57,304 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095d3762d0> has no local changes
2026-10-17 23:42:57,304 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:42:57,454 [ scc.git] DEBUG [detached HEAD 267e644] merge master -Dorg -Ssuccess-only
2026-10-17 23:42:57,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:42:57,456 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:42:57,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-10-17 23:42:58,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-10-17 23:42:58,269 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:42:58,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-10-17 23:42:59,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:42:59,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:43:00,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:00,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:43:00,855 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:00,855 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:43:00,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-17 23:43:00,857 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:00,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:00,879 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:43:00,903 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:43:00,903 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:43:00,926 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:43:00,995 [ scc.git] DEBUG Already up to date.
2026-10-17 23:43:00,995 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-10-17 23:43:01,457 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-10-17 23:43:01,457 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-10-17 23:43:01,481 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:43:01,481 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:01,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:01,496 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-10-17 23:43:01,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:01,532 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-10-17 23:43:01,702 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:43:01,764 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:43:01,764 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:43:01,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:01,967 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:43:02,095 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:02,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:02,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:43:02,230 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:43:02,288 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a260150> has no local changes
2026-10-17 23:43:02,288 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:43:02,419 [ scc.git] DEBUG [detached HEAD 31d8b37] merge master -Dorg -Ssuccess-only
2026-10-17 23:43:02,421 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:02,421 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:43:02,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-10-17 23:43:03,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-10-17 23:43:03,248 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-17 23:43:03,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:04,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:43:05,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:43:05,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:06,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:43:06,004 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:06,004 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:43:06,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-17 23:43:06,006 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:06,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:06,032 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:43:06,051 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:43:06,051 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:43:06,072 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:43:06,124 [ scc.git] DEBUG Already up to date.
2026-10-17 23:43:06,124 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-10-17 23:43:06,542 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-10-17 23:43:06,542 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-10-17 23:43:06,566 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:43:06,566 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:06,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:06,580 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-10-17 23:43:06,602 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:06,615 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-10-17 23:43:06,857 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:43:06,930 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-17 23:43:06,930 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-17 23:43:07,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:07,110 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:43:07,230 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:07,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:07,246 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:43:07,349 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:43:07,408 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095a25a550> has no local changes
2026-10-17 23:43:07,408 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:43:07,573 [ scc.git] DEBUG [detached HEAD c3d3ded] merge master -Dorg -Ssuccess-only
2026-10-17 23:43:07,575 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:07,575 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:43:07,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-10-17 23:43:07,808 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:43:07,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-17 23:43:07,809 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:07,809 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:07,837 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-17 23:43:07,858 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:43:07,858 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-17 23:43:07,878 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-17 23:43:07,933 [ scc.git] DEBUG Already up to date.
2026-10-17 23:43:07,933 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:43:07,933 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:07,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:07,948 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:43:08,065 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:08,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:08,078 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:43:08,183 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:43:08,293 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0958057f50> has no local changes
2026-10-17 23:43:08,293 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:43:08,426 [ scc.git] DEBUG [detached HEAD b2a4d82] merge master -Dorg -Ssuccess-only
2026-10-17 23:43:08,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:08,428 [ scc.git] INFO Overriding base-branch from master to develop
2026-10-17 23:43:08,428 [ scc.repo] DEBUG ## PRs found:
2026-10-17 23:43:08,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-10-17 23:43:09,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/235 HTTP/1.1" 200 None
2026-10-17 23:43:09,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/235/comments HTTP/1.1" 200 None
2026-10-17 23:43:10,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/c3c373e1ea77f70c4329469dcf5b5979eb5d0d03?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:10,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/c3c373e1ea77f70c4329469dcf5b5979eb5d0d03/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:43:11,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/c3c373e1ea77f70c4329469dcf5b5979eb5d0d03/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:43:11,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/c3c373e1ea77f70c4329469dcf5b5979eb5d0d03?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:12,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/c3c373e1ea77f70c4329469dcf5b5979eb5d0d03?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:43:12,113 [ scc.repo] DEBUG - PR 235 will-moore 'Batch roi export tags'
2026-10-17 23:43:12,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-10-17 23:43:13,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:13,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-17 23:43:14,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-17 23:43:14,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-10-17 23:43:15,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-10-17 23:43:15,117 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-10-17 23:43:15,117 [ scc.repo] DEBUG ## Branches found:
2026-10-17 23:43:15,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-17 23:43:15,119 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:15,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:15,144 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-10-17 23:43:15,166 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-17 23:43:15,166 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-10-17 23:43:15,399 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-10-17 23:43:15,716 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-10-17 23:43:16,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-10-17 23:43:16,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-10-17 23:43:17,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-10-17 23:43:18,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-10-17 23:43:19,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-10-17 23:43:20,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-10-17 23:43:21,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-10-17 23:43:21,136 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-10-17 23:43:21,652 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-10-17 23:43:21,652 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-10-17 23:43:21,676 [ scc.git] DEBUG Calling 'git fetch origin pull/235/head'
2026-10-17 23:43:22,497 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-10-17 23:43:22,497 [ scc.git] DEBUG * branch refs/pull/235/head -> FETCH_HEAD
2026-10-17 23:43:22,522 [ scc.git] DEBUG ## Unique users: []
2026-10-17 23:43:22,522 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:22,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:22,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-10-17 23:43:22,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:22,585 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-10-17 23:43:22,829 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:43:22,888 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-10-17 23:43:22,888 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-10-17 23:43:23,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:23,097 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c3c373e1ea77f70c4329469dcf5b5979eb5d0d03'
2026-10-17 23:43:23,161 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:23,175 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 235 (Batch roi export tags) c3c373e1ea77f70c4329469dcf5b5979eb5d0d03'
2026-10-17 23:43:23,457 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-17 23:43:23,532 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 110 ++++++++++++++++++++-----------
2026-10-17 23:43:23,532 [ scc.git] DEBUG test/integration/test_export_scripts.py | 52 ++++++++++-----
2026-10-17 23:43:23,532 [ scc.git] DEBUG 2 files changed, 106 insertions(+), 56 deletions(-)
2026-10-17 23:43:23,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:23,712 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-17 23:43:23,831 [ scc.git] DEBUG Get sha1 of %s
2026-10-17 23:43:23,831 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-17 23:43:23,845 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:43:23,952 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:43:24,028 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0958063f90> has no local changes
2026-10-17 23:43:24,028 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
- PR 235 will-moore 'Batch roi export tags'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:43:24,183 [ scc.git] DEBUG [detached HEAD 9384d57] merge master -Dorg -Ssuccess-only
2026-10-17 23:43:24,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:24,185 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-17 23:43:24,498 [ scc.config] DEBUG Found submodule.figure.url
2026-10-17 23:43:24,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:24,717 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-10-17 23:43:25,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:25,154 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-10-17 23:43:25,164 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-10-17 23:43:25,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:25,631 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-10-17 23:43:25,639 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-10-17 23:43:26,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:26,045 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-10-17 23:43:26,052 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-10-17 23:43:26,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:26,480 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-10-17 23:43:26,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:26,905 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-10-17 23:43:26,913 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-10-17 23:43:27,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:27,338 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-10-17 23:43:27,345 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-10-17 23:43:27,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:27,802 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-10-17 23:43:27,809 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-10-17 23:43:28,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:28,225 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-10-17 23:43:28,232 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-10-17 23:43:28,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:28,658 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-10-17 23:43:28,665 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-10-17 23:43:29,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:29,109 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-10-17 23:43:29,118 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-10-17 23:43:29,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:29,560 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-10-17 23:43:29,568 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-10-17 23:43:29,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:29,957 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-10-17 23:43:29,965 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-10-17 23:43:30,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:30,396 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-10-17 23:43:30,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:30,832 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-10-17 23:43:31,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:31,255 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-10-17 23:43:31,265 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-10-17 23:43:31,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:31,685 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-10-17 23:43:32,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:32,161 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-10-17 23:43:32,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:32,591 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-10-17 23:43:32,599 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-10-17 23:43:32,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:33,011 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-10-17 23:43:33,018 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-10-17 23:43:33,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:33,438 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-10-17 23:43:33,445 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-10-17 23:43:33,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:33,899 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-10-17 23:43:33,906 [ scc.config] DEBUG Found submodule.scripts.url
2026-10-17 23:43:34,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-17 23:43:34,349 [ scc.config] DEBUG Found submodule.scripts.branch
2026-10-17 23:43:34,349 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-17 23:43:36,876 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f095b3be490> has local changes
2026-10-17 23:43:36,876 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/figure
Excluded PRs:
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..e92b4e8
Previously merged:
- PR 20 will-moore 'Hide export dropdown unless omero'
- PR 19 Rdornier 'Fix rectangle crop'
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 12 will-moore 'Browser based export'
- PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Conflicting PRs (not included):
- PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
- PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..0a836211
Previously merged:
- PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
- PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
- PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
- PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
- PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
- PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 497 will-moore 'ROI Tags'
- PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
- PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
- PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
- PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
- PR 235 will-moore 'Batch roi export tags'
Generated by OMERO-plugins-push#114 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/114/)'
2026-10-17 23:43:37,427 [ scc.git] DEBUG [detached HEAD 40147f5] merge master -Dorg -Ssuccess-only
2026-10-17 23:43:37,427 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-)
2026-10-17 23:43:37,428 [ scc.merge] INFO Repository: ome/omero-plugins
2026-10-17 23:43:37,428 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,428 [ scc.merge] INFO
2026-10-17 23:43:37,428 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-17 23:43:37,428 [ scc.merge] INFO
2026-10-17 23:43:37,428 [ scc.merge] INFO Repository: ome/figure
2026-10-17 23:43:37,428 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft)
2026-10-17 23:43:37,428 [ scc.merge] INFO Updating 3935875..e92b4e8
2026-10-17 23:43:37,428 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
2026-10-17 23:43:37,428 [ scc.merge] INFO
2026-10-17 23:43:37,428 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 12 will-moore 'Browser based export'
2026-10-17 23:43:37,428 [ scc.merge] INFO - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
2026-10-17 23:43:37,428 [ scc.merge] INFO
2026-10-17 23:43:37,428 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-10-17 23:43:37,428 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-10-17 23:43:37,429 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-10-17 23:43:37,429 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-10-17 23:43:37,429 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-10-17 23:43:37,429 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-10-17 23:43:37,429 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-10-17 23:43:37,429 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-10-17 23:43:37,429 [ scc.merge] INFO Updating 11d3587..d5f88d8
2026-10-17 23:43:37,429 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-10-17 23:43:37,429 [ scc.merge] INFO
2026-10-17 23:43:37,429 [ scc.merge] INFO Repository: ome/omero-figure
2026-10-17 23:43:37,429 [ scc.merge] INFO Updating 9cc36cde..3195c3df
2026-10-17 23:43:37,429 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-10-17 23:43:37,429 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-10-17 23:43:37,430 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Repository: ome/omero-gallery
2026-10-17 23:43:37,430 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-10-17 23:43:37,430 [ scc.merge] INFO
2026-10-17 23:43:37,430 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-10-17 23:43:37,430 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,430 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-10-17 23:43:37,431 [ scc.merge] INFO Updating 7a798cee..0a836211
2026-10-17 23:43:37,431 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,431 [ scc.merge] INFO
2026-10-17 23:43:37,431 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 497 will-moore 'ROI Tags'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
2026-10-17 23:43:37,431 [ scc.merge] INFO
2026-10-17 23:43:37,431 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-10-17 23:43:37,431 [ scc.merge] INFO
2026-10-17 23:43:37,431 [ scc.merge] INFO Repository: ome/omero-mapr
2026-10-17 23:43:37,431 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,431 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-10-17 23:43:37,432 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-metadata
2026-10-17 23:43:37,432 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-10-17 23:43:37,432 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-parade
2026-10-17 23:43:37,432 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-10-17 23:43:37,432 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-10-17 23:43:37,432 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-rois
2026-10-17 23:43:37,432 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-10-17 23:43:37,432 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-10-17 23:43:37,432 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-signup
2026-10-17 23:43:37,432 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-10-17 23:43:37,432 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-10-17 23:43:37,432 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-10-17 23:43:37,432 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,432 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-10-17 23:43:37,432 [ scc.merge] INFO
2026-10-17 23:43:37,432 [ scc.merge] INFO Repository: ome/omero-upload
2026-10-17 23:43:37,432 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-10-17 23:43:37,433 [ scc.merge] INFO Updating deab817..160d894
2026-10-17 23:43:37,433 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-10-17 23:43:37,433 [ scc.merge] INFO Excluded PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-10-17 23:43:37,433 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-10-17 23:43:37,433 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-10-17 23:43:37,433 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-10-17 23:43:37,433 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-10-17 23:43:37,433 [ scc.merge] INFO Already up to date.
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Repository: ome/scripts
2026-10-17 23:43:37,433 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-10-17 23:43:37,433 [ scc.merge] INFO Previously merged:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] INFO Merged PRs:
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-10-17 23:43:37,433 [ scc.merge] INFO - PR 235 will-moore 'Batch roi export tags'
2026-10-17 23:43:37,433 [ scc.merge] INFO
2026-10-17 23:43:37,433 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-17 23:43:37,433 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-17 23:43:37,473 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-17 23:43:37,486 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-17 23:43:37,500 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-17 23:43:37,514 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-17 23:43:37,529 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-17 23:43:37,544 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-17 23:43:37,557 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-17 23:43:37,569 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,583 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-17 23:43:37,583 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-17 23:43:37,596 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,610 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,610 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-17 23:43:37,610 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-17 23:43:37,624 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-17 23:43:37,638 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-17 23:43:37,651 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-17 23:43:37,664 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-17 23:43:37,677 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,712 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-17 23:43:37,713 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-17 23:43:37,728 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,742 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,742 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-17 23:43:37,742 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-17 23:43:37,755 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-17 23:43:37,768 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-17 23:43:37,784 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,800 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-17 23:43:37,800 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-17 23:43:37,800 [ scc.git] DEBUG Calling 'git remote'
2026-10-17 23:43:37,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
grep: build.gradle: No such file or directory
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Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'figure'
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'figure'
HEAD detached from 3935875
nothing to commit, working tree clean
Entering 'minimal-omero-client'
[detached HEAD 3f0134b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
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Entering 'omero-iviewer'
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[detached HEAD e99ef5b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-17 23:44:49,025 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-17 23:44:58,967 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-17 23:45:01,587 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-17 23:45:06,807 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-17 23:46:13,036 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS