Started by upstream project "Trigger" build number 63
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
Commit message: "Merge pull request #18 from jburel/python_311"
> git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-plugins.git
> git --version # timeout=10
> git --version # 'git version 2.52.0'
> git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master)
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10
Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378"
> git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.omero-figure.url # timeout=10
> git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
> git config --get submodule.minimal-omero-client.url # timeout=10
> git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.omero-test-infra.url # timeout=10
> git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
> git config --get submodule.omero-prometheus-tools.url # timeout=10
> git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
> git config --get submodule.omero-parade.url # timeout=10
> git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
> git config --get submodule.omero-mapr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
> git config --get submodule.omero-fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
> git config --get submodule.omero-iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
> git config --get submodule.omero-gallery.url # timeout=10
> git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
> git config --get submodule.rOMERO-gateway.url # timeout=10
> git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
> git config --get submodule.omero-weberror.url # timeout=10
> git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
> git config --get submodule.omero-cli-render.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
> git config --get submodule.omero-cli-duplicate.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
> git config --get submodule.omero-metadata.url # timeout=10
> git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
> git config --get submodule.omero-webtest.url # timeout=10
> git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
> git config --get submodule.omero-upload.url # timeout=10
> git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
> git config --get submodule.omero-virtual-microscope.url # timeout=10
> git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
> git config --get submodule.omero-rois.url # timeout=10
> git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
> git config --get submodule.omero-signup.url # timeout=10
> git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
> git config --get submodule.omero-web-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10
> git config --get submodule.omero-cli-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10
> git submodule update --init --recursive omero-figure # timeout=10
> git submodule update --init --recursive minimal-omero-client # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive omero-test-infra # timeout=10
> git submodule update --init --recursive omero-prometheus-tools # timeout=10
> git submodule update --init --recursive omero-parade # timeout=10
> git submodule update --init --recursive omero-mapr # timeout=10
> git submodule update --init --recursive omero-fpbioimage # timeout=10
> git submodule update --init --recursive omero-iviewer # timeout=10
> git submodule update --init --recursive omero-gallery # timeout=10
> git submodule update --init --recursive rOMERO-gateway # timeout=10
> git submodule update --init --recursive omero-weberror # timeout=10
> git submodule update --init --recursive omero-cli-render # timeout=10
> git submodule update --init --recursive omero-cli-duplicate # timeout=10
> git submodule update --init --recursive omero-metadata # timeout=10
> git submodule update --init --recursive omero-webtest # timeout=10
> git submodule update --init --recursive omero-upload # timeout=10
> git submodule update --init --recursive omero-virtual-microscope # timeout=10
> git submodule update --init --recursive omero-rois # timeout=10
> git submodule update --init --recursive omero-signup # timeout=10
> git submodule update --init --recursive omero-web-zarr # timeout=10
> git submodule update --init --recursive omero-cli-zarr # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 57
[Pipeline] sh
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ tar -zxf -
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ popd
~/workspace/OMERO-plugins-push
+ python3.11 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ python3.11 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.3.1
Uninstalling pip-22.3.1:
Successfully uninstalled pip-22.3.1
Successfully installed pip-26.2.1
+ python3.11 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pyjwt-2.13.0-py3-none-any.whl.metadata (3.4 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-50.0.0-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB)
Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached pygithub-2.9.1-py3-none-any.whl (449 kB)
Using cached pyjwt-2.13.0-py3-none-any.whl (31 kB)
Using cached cryptography-50.0.0-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
Using cached requests-2.34.2-py3-none-any.whl (73 kB)
Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
Using cached idna-3.19-py3-none-any.whl (68 kB)
Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached pycparser-3.0-py3-none-any.whl (48 kB)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.1 cryptography-50.0.0 future-1.0.0 idna-3.19 pycparser-3.0 pyjwt-2.13.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-08-20 01:32:36,137 [ scc.config] DEBUG Found github.token
2026-08-20 01:32:36,139 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-08-20 01:32:36,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:32:36,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:32:37,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-08-20 01:32:37,231 [ scc.gh] DEBUG 4959 remaining from 5000 (Reset at 02:08
2026-08-20 01:32:37,232 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:32:37,245 [ scc.git] DEBUG Check current status
2026-08-20 01:32:37,245 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:32:37,273 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-20 01:32:37,274 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:32:37,508 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-20 01:32:37,604 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-20 01:32:37,664 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-20 01:32:37,714 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-20 01:32:37,807 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-08-20 01:32:37,850 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-20 01:32:37,921 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-20 01:32:38,081 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-08-20 01:32:38,131 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-20 01:32:38,189 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-20 01:32:38,250 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-20 01:32:38,299 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-20 01:32:38,348 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-20 01:32:38,404 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-20 01:32:38,561 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-20 01:32:38,604 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-20 01:32:38,670 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-20 01:32:38,780 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-20 01:32:38,780 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-20 01:32:38,792 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-20 01:32:38,825 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-20 01:32:38,846 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-08-20 01:32:38,858 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:32:39,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-08-20 01:32:39,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:32:40,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:32:40,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:32:41,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:32:41,042 [ scc.git] DEBUG Resetting...
2026-08-20 01:32:41,042 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-08-20 01:32:41,456 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-20 01:32:41,458 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-08-20 01:32:43,465 [ scc.git] DEBUG Check current status
2026-08-20 01:32:43,465 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:32:43,488 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-20 01:32:43,489 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:32:43,700 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-20 01:32:43,736 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-20 01:32:43,840 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-20 01:32:43,917 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-20 01:32:43,917 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-08-20 01:32:43,917 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-20 01:32:43,921 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-20 01:32:43,981 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-08-20 01:32:44,018 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-20 01:32:44,057 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-20 01:32:44,091 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-20 01:32:44,120 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-20 01:32:44,158 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-20 01:32:44,188 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-20 01:32:44,224 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-20 01:32:44,261 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-20 01:32:44,299 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-20 01:32:44,344 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-20 01:32:44,388 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-20 01:32:44,428 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-20 01:32:44,458 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-20 01:32:44,478 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-08-20 01:32:44,479 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-08-20 01:32:44,480 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-08-20 01:32:44,480 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-08-20 01:32:44,480 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-08-20 01:32:44,480 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-08-20 01:32:44,480 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:32:44,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-08-20 01:32:45,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-08-20 01:32:45,354 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:32:45,354 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-20 01:32:45,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-08-20 01:32:45,888 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:32:45,888 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-20 01:32:46,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-08-20 01:32:46,449 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:32:46,449 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-20 01:32:46,449 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:32:46,449 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:32:46,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:32:46,470 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:32:46,501 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:32:46,501 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:32:46,530 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:32:46,665 [ scc.git] DEBUG Already up to date.
2026-08-20 01:32:46,665 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-08-20 01:32:47,241 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:32:47,241 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-08-20 01:32:47,584 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-08-20 01:32:48,023 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:32:48,023 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-08-20 01:32:48,107 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-08-20 01:32:48,575 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:32:48,575 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-08-20 01:32:48,700 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:32:48,700 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:32:48,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:32:48,713 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-20 01:32:48,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:32:48,749 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-20 01:32:51,620 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:32:51,692 [ scc.git] DEBUG scripts | 2 +-
2026-08-20 01:32:51,692 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:32:51,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:32:51,897 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-20 01:32:51,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:32:51,935 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-20 01:32:52,987 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:32:53,133 [ scc.git] DEBUG omero-figure | 2 +-
2026-08-20 01:32:53,133 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:32:53,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:32:53,328 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-20 01:32:53,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:32:53,389 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-20 01:32:55,193 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:32:55,639 [ scc.git] DEBUG omero-iviewer | 2 +-
2026-08-20 01:32:55,639 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:32:55,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:32:55,832 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:32:57,429 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-08-20 01:32:59,425 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-08-20 01:33:01,338 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-08-20 01:33:01,339 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:33:01,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:33:01,357 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:33:06,682 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f9a8507dcd0> has no local changes
2026-08-20 01:33:06,682 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:33:08,683 [ scc.git] DEBUG [detached HEAD c73b1b4] merge master -Dorg -Snone
2026-08-20 01:33:08,685 [ scc.merge] INFO Repository: ome/omero-plugins
2026-08-20 01:33:08,685 [ scc.merge] INFO Already up to date.
2026-08-20 01:33:08,685 [ scc.merge] INFO
2026-08-20 01:33:08,685 [ scc.merge] INFO Merged PRs:
2026-08-20 01:33:08,685 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-20 01:33:08,685 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-20 01:33:08,685 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-20 01:33:08,685 [ scc.merge] INFO
2026-08-20 01:33:08,685 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-08-20 01:33:08,685 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'minimal-omero-client'
Synchronizing submodule url for 'omero-cli-duplicate'
Synchronizing submodule url for 'omero-cli-render'
Synchronizing submodule url for 'omero-cli-zarr'
Synchronizing submodule url for 'omero-figure'
Synchronizing submodule url for 'omero-fpbioimage'
Synchronizing submodule url for 'omero-gallery'
Synchronizing submodule url for 'omero-iviewer'
Synchronizing submodule url for 'omero-mapr'
Synchronizing submodule url for 'omero-metadata'
Synchronizing submodule url for 'omero-parade'
Synchronizing submodule url for 'omero-prometheus-tools'
Synchronizing submodule url for 'omero-rois'
Synchronizing submodule url for 'omero-signup'
Synchronizing submodule url for 'omero-test-infra'
Synchronizing submodule url for 'omero-upload'
Synchronizing submodule url for 'omero-virtual-microscope'
Synchronizing submodule url for 'omero-web-zarr'
Synchronizing submodule url for 'omero-weberror'
Synchronizing submodule url for 'omero-webtest'
Synchronizing submodule url for 'rOMERO-gateway'
Synchronizing submodule url for 'scripts'
Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8'
From https://github.com/ome/omero-cli-zarr
9f844b8..360171f master -> origin/master
Submodule path 'omero-cli-zarr': checked out '360171f104cea9691463b7a4d31c6d0d34dbecc0'
From https://github.com/ome/omero-figure
81f95f44..52655d2a master -> origin/master
Submodule path 'omero-figure': checked out '52655d2a32e97156ca7e01f8d400986f37c3f889'
Submodule path 'omero-iviewer': checked out '3af5a3461d5bbae51d9026388abf0139a32474ea'
Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b'
Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77'
Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f'
Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368'
Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0'
Merge all submodules using repository configuration:
base-branch: master
submodules:
scripts:
base-branch: develop
omero-web-zarr:
base-branch: main
2026-08-20 01:34:00,098 [ scc.config] DEBUG Found github.token
2026-08-20 01:34:00,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-08-20 01:34:00,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:34:00,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:34:01,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-08-20 01:34:01,188 [ scc.gh] DEBUG 4959 remaining from 5000 (Reset at 02:08
2026-08-20 01:34:01,188 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:01,202 [ scc.git] DEBUG Check current status
2026-08-20 01:34:01,202 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:01,223 [ scc.git] DEBUG c73b1b4 merge master -Dorg -Snone
2026-08-20 01:34:01,224 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:01,394 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-20 01:34:01,424 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-20 01:34:01,453 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303)
2026-08-20 01:34:01,490 [ scc.git] DEBUG +360171f104cea9691463b7a4d31c6d0d34dbecc0 omero-cli-zarr (v0.8.0-9-g360171f)
2026-08-20 01:34:01,539 [ scc.git] DEBUG +52655d2a32e97156ca7e01f8d400986f37c3f889 omero-figure (v8.0.1.rc2-30-g52655d2a)
2026-08-20 01:34:01,566 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-20 01:34:01,595 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-20 01:34:01,669 [ scc.git] DEBUG +3af5a3461d5bbae51d9026388abf0139a32474ea omero-iviewer (v0.18.0-7-g3af5a346)
2026-08-20 01:34:01,701 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-20 01:34:01,741 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4)
2026-08-20 01:34:01,771 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-20 01:34:01,803 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-20 01:34:01,833 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96)
2026-08-20 01:34:01,863 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-20 01:34:01,893 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015)
2026-08-20 01:34:01,921 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-20 01:34:01,950 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894)
2026-08-20 01:34:01,980 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685)
2026-08-20 01:34:02,011 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-20 01:34:02,042 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-20 01:34:02,071 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-20 01:34:02,092 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768)
2026-08-20 01:34:02,128 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:02,128 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2026-08-20 01:34:02,131 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-web-zarr:
base-branch: main
scripts:
base-branch: develop
2026-08-20 01:34:02,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-08-20 01:34:02,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:03,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:03,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:04,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:04,388 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:04,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-20 01:34:04,677 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:04,712 [ scc.git] DEBUG Check current status
2026-08-20 01:34:04,712 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:04,830 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0
2026-08-20 01:34:04,831 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:04,958 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:05,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None
2026-08-20 01:34:05,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:06,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:06,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:07,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:07,149 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:07,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:07,334 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-20 01:34:07,334 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:07,388 [ scc.git] DEBUG Check current status
2026-08-20 01:34:07,388 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:07,442 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build
2026-08-20 01:34:07,443 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:07,595 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:07,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None
2026-08-20 01:34:08,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:08,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:09,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:10,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:10,015 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:10,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:10,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-20 01:34:10,156 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:10,200 [ scc.git] DEBUG Check current status
2026-08-20 01:34:10,200 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:10,246 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease
2026-08-20 01:34:10,247 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:10,398 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:10,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None
2026-08-20 01:34:11,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:11,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:12,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:12,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:12,572 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:12,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:12,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-20 01:34:12,707 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:12,744 [ scc.git] DEBUG Check current status
2026-08-20 01:34:12,744 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:12,793 [ scc.git] DEBUG 360171f Merge pull request #197 from pwalczysko/fix-pragma
2026-08-20 01:34:12,793 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:12,924 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:13,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None
2026-08-20 01:34:13,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:14,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:14,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:15,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:15,186 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:15,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:15,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-20 01:34:15,349 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:15,407 [ scc.git] DEBUG Check current status
2026-08-20 01:34:15,407 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:15,511 [ scc.git] DEBUG 52655d2a Merge pull request #703 from will-moore/readme_remove_rc
2026-08-20 01:34:15,511 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:15,627 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:15,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None
2026-08-20 01:34:16,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:16,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:17,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:17,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:17,962 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:18,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:18,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-20 01:34:18,065 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:18,090 [ scc.git] DEBUG Check current status
2026-08-20 01:34:18,090 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:18,118 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build
2026-08-20 01:34:18,119 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:18,246 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:18,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None
2026-08-20 01:34:19,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:19,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:19,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:20,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:20,441 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:20,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:20,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-20 01:34:20,556 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:20,567 [ scc.git] DEBUG Check current status
2026-08-20 01:34:20,567 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:20,586 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build
2026-08-20 01:34:20,586 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:20,700 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:21,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None
2026-08-20 01:34:21,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:21,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:22,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:22,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:22,915 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:23,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:23,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-20 01:34:23,017 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:23,044 [ scc.git] DEBUG Check current status
2026-08-20 01:34:23,044 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:23,084 [ scc.git] DEBUG 3af5a346 Merge pull request #559 from ome/dependabot/npm_and_yarn/multi-392a5e4999
2026-08-20 01:34:23,086 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:23,204 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:23,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None
2026-08-20 01:34:24,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:24,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:24,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:25,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:25,405 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:25,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:25,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-20 01:34:25,551 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:25,573 [ scc.git] DEBUG Check current status
2026-08-20 01:34:25,573 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:25,605 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0
2026-08-20 01:34:25,607 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:25,733 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:26,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None
2026-08-20 01:34:26,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:26,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:27,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:27,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:27,927 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:28,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:28,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-20 01:34:28,036 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:28,054 [ scc.git] DEBUG Check current status
2026-08-20 01:34:28,054 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:28,078 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation
2026-08-20 01:34:28,079 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:28,183 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:28,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None
2026-08-20 01:34:29,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:29,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:30,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:30,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:30,591 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:30,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:30,734 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-20 01:34:30,734 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:30,766 [ scc.git] DEBUG Check current status
2026-08-20 01:34:30,766 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:30,804 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build
2026-08-20 01:34:30,805 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:30,997 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:31,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None
2026-08-20 01:34:31,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:32,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:32,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:33,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:33,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:33,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:33,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-20 01:34:33,251 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:33,266 [ scc.git] DEBUG Check current status
2026-08-20 01:34:33,266 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:33,287 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build
2026-08-20 01:34:33,288 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:33,396 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:33,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None
2026-08-20 01:34:34,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:34,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:35,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:35,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:35,873 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:36,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:36,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-20 01:34:36,002 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:36,026 [ scc.git] DEBUG Check current status
2026-08-20 01:34:36,026 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:36,046 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-08-20 01:34:36,047 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:36,178 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:36,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None
2026-08-20 01:34:37,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:37,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:37,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:38,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:38,411 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:38,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:38,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-20 01:34:38,503 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:38,522 [ scc.git] DEBUG Check current status
2026-08-20 01:34:38,522 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:38,543 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build
2026-08-20 01:34:38,544 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:38,653 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:38,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None
2026-08-20 01:34:39,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:39,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:40,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:40,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:40,844 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:41,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:41,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-20 01:34:41,035 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:41,051 [ scc.git] DEBUG Check current status
2026-08-20 01:34:41,051 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:41,072 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme
2026-08-20 01:34:41,073 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:41,180 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:41,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-20 01:34:41,404 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-20 01:34:41,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None
2026-08-20 01:34:42,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:42,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:43,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:43,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:43,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:43,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:43,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-20 01:34:43,689 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:43,710 [ scc.git] DEBUG Check current status
2026-08-20 01:34:43,710 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:43,738 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build
2026-08-20 01:34:43,739 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:43,851 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:44,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None
2026-08-20 01:34:44,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:45,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:45,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:46,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:46,173 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:46,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:46,343 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-20 01:34:46,343 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:46,413 [ scc.git] DEBUG Check current status
2026-08-20 01:34:46,413 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:46,468 [ scc.git] DEBUG 160d894 Fix display of code
2026-08-20 01:34:46,468 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:46,604 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:46,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None
2026-08-20 01:34:47,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:47,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:48,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:48,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:48,795 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:48,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:48,915 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-20 01:34:48,915 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:48,948 [ scc.git] DEBUG Check current status
2026-08-20 01:34:48,948 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:48,979 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-08-20 01:34:48,980 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:49,094 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:49,094 [ scc.git] DEBUG Repository configuration:
base-branch: main
2026-08-20 01:34:49,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None
2026-08-20 01:34:49,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:50,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:50,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:51,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:51,254 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:51,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:51,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-20 01:34:51,392 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:51,427 [ scc.git] DEBUG Check current status
2026-08-20 01:34:51,428 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:51,451 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build
2026-08-20 01:34:51,452 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:51,569 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:51,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-20 01:34:51,762 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-20 01:34:52,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None
2026-08-20 01:34:52,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:53,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:53,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:53,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:53,988 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:54,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:54,108 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-20 01:34:54,109 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:54,132 [ scc.git] DEBUG Check current status
2026-08-20 01:34:54,132 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:54,170 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build
2026-08-20 01:34:54,171 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:54,305 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:54,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-20 01:34:54,503 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-20 01:34:54,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None
2026-08-20 01:34:55,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:55,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:56,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:56,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:56,666 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:56,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:56,772 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-20 01:34:56,773 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:56,808 [ scc.git] DEBUG Check current status
2026-08-20 01:34:56,808 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:56,836 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2026-08-20 01:34:56,837 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:56,945 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:57,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None
2026-08-20 01:34:57,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:34:58,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:34:58,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:34:59,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:34:59,074 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:34:59,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:34:59,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-20 01:34:59,192 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-20 01:34:59,210 [ scc.git] DEBUG Check current status
2026-08-20 01:34:59,210 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:34:59,243 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0
2026-08-20 01:34:59,244 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:34:59,360 [ scc.config] DEBUG Found remote.origin.url
2026-08-20 01:34:59,361 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2026-08-20 01:34:59,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-20 01:34:59,591 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-20 01:34:59,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None
2026-08-20 01:35:00,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-20 01:35:00,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-20 01:35:01,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-20 01:35:01,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-20 01:35:01,761 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:35:01,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:35:01,963 [ scc.git] DEBUG Resetting...
2026-08-20 01:35:01,963 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-08-20 01:35:03,791 [ scc.git] DEBUG HEAD is now at c73b1b4 merge master -Dorg -Snone
2026-08-20 01:35:03,792 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-08-20 01:35:04,353 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264'
2026-08-20 01:35:04,874 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62'
2026-08-20 01:35:08,570 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-08-20 01:35:10,707 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-08-20 01:35:12,210 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997'
2026-08-20 01:35:13,972 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9'
2026-08-20 01:35:14,684 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73'
2026-08-20 01:35:15,220 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743'
2026-08-20 01:35:15,659 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2026-08-20 01:35:16,900 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-08-20 01:35:16,921 [ scc.git] DEBUG Check current status
2026-08-20 01:35:16,921 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-20 01:35:16,970 [ scc.git] DEBUG c73b1b4 merge master -Dorg -Snone
2026-08-20 01:35:16,971 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-20 01:35:17,203 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-20 01:35:17,237 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-20 01:35:17,274 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-20 01:35:17,309 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-20 01:35:17,341 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde)
2026-08-20 01:35:17,374 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-20 01:35:17,411 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-20 01:35:17,480 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee)
2026-08-20 01:35:17,517 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-20 01:35:17,553 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-20 01:35:17,585 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-20 01:35:17,616 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-20 01:35:17,651 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-20 01:35:17,684 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-20 01:35:17,714 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-20 01:35:17,747 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-20 01:35:17,777 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-20 01:35:17,808 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-20 01:35:17,838 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-20 01:35:17,870 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-20 01:35:17,899 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-20 01:35:17,918 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755)
2026-08-20 01:35:17,919 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-08-20 01:35:17,919 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-08-20 01:35:17,919 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-08-20 01:35:17,919 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-08-20 01:35:17,919 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-08-20 01:35:17,919 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-08-20 01:35:17,919 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:35:18,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-08-20 01:35:18,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-08-20 01:35:18,762 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:35:19,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:19,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:20,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:20,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:35:20,928 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-20 01:35:21,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-08-20 01:35:21,467 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:35:22,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:22,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:23,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:23,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:35:23,618 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-20 01:35:24,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-08-20 01:35:24,143 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:35:24,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:25,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:25,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:26,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:35:26,253 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-20 01:35:26,253 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:35:26,253 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:26,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:26,266 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:35:26,287 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:35:26,287 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:35:26,316 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:35:26,422 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:26,422 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-08-20 01:35:26,919 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:35:26,919 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-08-20 01:35:27,052 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-08-20 01:35:27,531 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:35:27,531 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-08-20 01:35:27,602 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-08-20 01:35:28,106 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-20 01:35:28,106 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-08-20 01:35:28,152 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:35:28,152 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:28,152 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:28,173 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-20 01:35:28,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:28,226 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-20 01:35:28,373 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:28,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:35:28,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-20 01:35:28,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:28,648 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-20 01:35:28,947 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:29,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:35:29,136 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-20 01:35:29,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:29,182 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-20 01:35:29,282 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:29,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:35:29,571 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:35:30,978 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:30,978 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:30,997 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:35:31,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2
2026-08-20 01:35:31,244 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:35:31,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-20 01:35:31,244 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:31,244 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:31,302 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:35:31,343 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:35:31,343 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:35:31,403 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:35:31,535 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:31,535 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:35:31,535 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:31,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:31,571 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:35:31,700 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:31,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:31,727 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:35:31,856 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:35:31,939 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ecce490> has no local changes
2026-08-20 01:35:31,940 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/minimal-omero-client
Already up to date.
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:35:33,653 [ scc.git] DEBUG [detached HEAD f2fe0fc] merge master -Dorg -Ssuccess-only
2026-08-20 01:35:33,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:35:33,656 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:35:34,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None
2026-08-20 01:35:34,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None
2026-08-20 01:35:34,546 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:35:35,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:35,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:36,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:35:36,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:37,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:35:37,308 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:35:37,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None
2026-08-20 01:35:38,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None
2026-08-20 01:35:38,306 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:35:38,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-20 01:35:38,306 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:38,306 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:38,328 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:35:38,349 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:35:38,349 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:35:38,371 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:35:38,438 [ scc.git] DEBUG Already up to date.
2026-08-20 01:35:38,439 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head'
2026-08-20 01:35:38,923 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate
2026-08-20 01:35:38,923 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD
2026-08-20 01:35:38,964 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:35:38,964 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:38,965 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:38,983 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-08-20 01:35:39,009 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:39,025 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-08-20 01:35:39,445 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:35:39,542 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:35:39,542 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:35:39,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:35:39,726 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:35:39,841 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:39,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:39,865 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:35:40,000 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:35:40,098 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514eb44490> has no local changes
2026-08-20 01:35:40,098 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:35:40,411 [ scc.git] DEBUG [detached HEAD 746df0a] merge master -Dorg -Ssuccess-only
2026-08-20 01:35:40,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:35:40,413 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:35:40,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None
2026-08-20 01:35:41,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None
2026-08-20 01:35:41,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None
2026-08-20 01:35:42,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:43,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:43,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:35:44,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:44,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:35:44,576 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate'
2026-08-20 01:35:45,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None
2026-08-20 01:35:45,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None
2026-08-20 01:35:45,565 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:35:45,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-20 01:35:45,566 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:45,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:45,589 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:35:45,621 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:35:45,621 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:35:45,656 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:35:45,936 [ scc.git] DEBUG Updating ce6e13c..68b7303
2026-08-20 01:35:46,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None
2026-08-20 01:35:47,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None
2026-08-20 01:35:48,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None
2026-08-20 01:35:48,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None
2026-08-20 01:35:48,927 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head'
2026-08-20 01:35:49,633 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render
2026-08-20 01:35:49,633 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD
2026-08-20 01:35:49,657 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:35:49,657 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:49,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:49,672 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-08-20 01:35:49,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:49,733 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-08-20 01:35:49,881 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py
2026-08-20 01:35:49,947 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:35:50,006 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++--------------------
2026-08-20 01:35:50,006 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-)
2026-08-20 01:35:50,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:35:50,198 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:35:50,301 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:35:50,301 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:35:50,314 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:35:50,407 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:35:50,459 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ee6a990> has no local changes
2026-08-20 01:35:50,459 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:35:50,639 [ scc.git] DEBUG [detached HEAD 620a9fc] merge master -Dorg -Ssuccess-only
2026-08-20 01:35:50,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:35:50,641 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:35:50,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None
2026-08-20 01:35:51,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/194 HTTP/1.1" 200 None
2026-08-20 01:35:52,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:52,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:53,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:35:53,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/193 HTTP/1.1" 200 None
2026-08-20 01:35:54,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:54,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:55,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:35:55,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:56,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?per_page=1 HTTP/1.1" 200 None
2026-08-20 01:35:56,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:57,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/status HTTP/1.1" 200 None
2026-08-20 01:35:57,160 [ scc.repo] DEBUG - PR 193 dominikl 'Only parse import uris if stated'
2026-08-20 01:35:57,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None
2026-08-20 01:35:58,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None
2026-08-20 01:35:58,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-20 01:35:59,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:00,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:36:00,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:00,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:01,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:01,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None
2026-08-20 01:36:01,946 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-08-20 01:36:02,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None
2026-08-20 01:36:02,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None
2026-08-20 01:36:03,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None
2026-08-20 01:36:03,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None
2026-08-20 01:36:04,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:05,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:05,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:36:06,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:06,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:09,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:10,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None
2026-08-20 01:36:10,428 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-08-20 01:36:10,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None
2026-08-20 01:36:11,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None
2026-08-20 01:36:12,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:12,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:13,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:36:13,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:14,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None
2026-08-20 01:36:14,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-20 01:36:15,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None
2026-08-20 01:36:15,348 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells'
2026-08-20 01:36:15,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None
2026-08-20 01:36:16,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None
2026-08-20 01:36:16,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None
2026-08-20 01:36:17,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None
2026-08-20 01:36:18,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None
2026-08-20 01:36:18,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None
2026-08-20 01:36:18,565 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:36:18,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-20 01:36:18,566 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:36:18,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:18,594 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:36:18,613 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:36:18,613 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:36:18,840 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:36:19,184 [ scc.git] DEBUG Updating 11d3587..360171f
2026-08-20 01:36:19,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None
2026-08-20 01:36:20,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None
2026-08-20 01:36:21,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None
2026-08-20 01:36:22,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None
2026-08-20 01:36:23,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None
2026-08-20 01:36:24,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None
2026-08-20 01:36:25,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None
2026-08-20 01:36:25,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None
2026-08-20 01:36:26,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None
2026-08-20 01:36:27,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None
2026-08-20 01:36:28,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None
2026-08-20 01:36:29,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None
2026-08-20 01:36:30,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None
2026-08-20 01:36:30,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None
2026-08-20 01:36:30,914 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head'
2026-08-20 01:36:31,794 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-20 01:36:31,794 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD
2026-08-20 01:36:31,816 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head'
2026-08-20 01:36:32,375 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-20 01:36:32,376 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD
2026-08-20 01:36:32,398 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head'
2026-08-20 01:36:32,922 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-20 01:36:32,922 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD
2026-08-20 01:36:32,941 [ scc.git] DEBUG Calling 'git fetch origin pull/193/head'
2026-08-20 01:36:33,438 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-20 01:36:33,438 [ scc.git] DEBUG * branch refs/pull/193/head -> FETCH_HEAD
2026-08-20 01:36:33,457 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:36:33,457 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:36:33,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:33,468 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-20 01:36:33,521 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:33,531 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging README.rst
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-08-20 01:36:33,967 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-08-20 01:36:33,982 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:36:33,983 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:36:34,012 [ scc.git] DEBUG Calling 'git reset --hard 360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:34,159 [ scc.git] DEBUG HEAD is now at 360171f Merge pull request #197 from pwalczysko/fix-pragma
2026-08-20 01:36:34,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:36:34,365 [ scc.git] DEBUG Calling 'git merge-base 360171f104cea9691463b7a4d31c6d0d34dbecc0 e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-20 01:36:34,406 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:34,426 [ scc.git] INFO - PR 174 will-moore 'Skip wells'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_zarr/cli.py
- src/omero_zarr/masks.py
- src/omero_zarr/raw_pixels.py
- src/omero_zarr/util.py
- test/integration/clitest/test_export.py
--conflicts
2026-08-20 01:36:34,434 [ scc.config] DEBUG Found github.token
2026-08-20 01:36:34,434 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts.
2026-08-20 01:36:34,434 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-20 01:36:34,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:34,479 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-20 01:36:34,788 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-08-20 01:36:34,788 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-08-20 01:36:34,788 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-08-20 01:36:34,788 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-08-20 01:36:34,803 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:36:34,804 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:36:34,830 [ scc.git] DEBUG Calling 'git reset --hard 360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:34,943 [ scc.git] DEBUG HEAD is now at 360171f Merge pull request #197 from pwalczysko/fix-pragma
2026-08-20 01:36:35,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:36:35,132 [ scc.git] DEBUG Calling 'git merge-base 360171f104cea9691463b7a4d31c6d0d34dbecc0 f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-20 01:36:35,163 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:35,182 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #174 will-moore 'Skip wells'
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
- Upstream changes
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
--conflicts
2026-08-20 01:36:35,191 [ scc.config] DEBUG Found github.token
2026-08-20 01:36:35,191 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts.
2026-08-20 01:36:35,191 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-20 01:36:35,221 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:35,232 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-20 01:36:35,618 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-08-20 01:36:35,619 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py
2026-08-20 01:36:35,619 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py
2026-08-20 01:36:35,619 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_import.py
2026-08-20 01:36:35,619 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_import.py
2026-08-20 01:36:35,645 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:36:35,646 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:36:35,673 [ scc.git] DEBUG Calling 'git reset --hard 360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:35,843 [ scc.git] DEBUG HEAD is now at 360171f Merge pull request #197 from pwalczysko/fix-pragma
2026-08-20 01:36:36,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:36:36,051 [ scc.git] DEBUG Calling 'git merge-base 360171f104cea9691463b7a4d31c6d0d34dbecc0 cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-20 01:36:36,084 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..360171f104cea9691463b7a4d31c6d0d34dbecc0'
2026-08-20 01:36:36,109 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_zarr/zarr_import.py
- test/integration/clitest/test_import.py
--conflicts
2026-08-20 01:36:36,121 [ scc.config] DEBUG Found github.token
2026-08-20 01:36:36,121 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts.
2026-08-20 01:36:36,121 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c'
2026-08-20 01:36:36,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:36,167 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 193 (Only parse import uris if stated) bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c'
2026-08-20 01:36:36,339 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py
2026-08-20 01:36:36,412 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:36:36,475 [ scc.git] DEBUG src/omero_zarr/cli.py | 8 ++++++++
2026-08-20 01:36:36,475 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 40 +++++++++++++++++++++-------------------
2026-08-20 01:36:36,475 [ scc.git] DEBUG 2 files changed, 29 insertions(+), 19 deletions(-)
2026-08-20 01:36:36,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:36:36,690 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:36:36,789 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:36:36,789 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:36,800 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:36:36,898 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:36:36,953 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ef6fb50> has no local changes
2026-08-20 01:36:36,953 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..360171f
Previously merged:
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:36:37,118 [ scc.git] DEBUG [detached HEAD b3db81e] merge master -Dorg -Ssuccess-only
2026-08-20 01:36:37,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:36:37,119 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:36:37,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 2
2026-08-20 01:36:37,330 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:36:37,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-20 01:36:37,330 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:36:37,330 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:36:37,347 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:36:37,366 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:36:37,366 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:36:38,099 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:36:39,383 [ scc.git] DEBUG Updating 9cc36cde..52655d2a
2026-08-20 01:36:39,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None
2026-08-20 01:36:40,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None
2026-08-20 01:36:41,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None
2026-08-20 01:36:42,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None
2026-08-20 01:36:43,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None
2026-08-20 01:36:43,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None
2026-08-20 01:36:44,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None
2026-08-20 01:36:45,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None
2026-08-20 01:36:46,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None
2026-08-20 01:36:48,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None
2026-08-20 01:36:48,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None
2026-08-20 01:36:50,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None
2026-08-20 01:36:51,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None
2026-08-20 01:36:52,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None
2026-08-20 01:36:52,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None
2026-08-20 01:36:53,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None
2026-08-20 01:36:54,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None
2026-08-20 01:36:55,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None
2026-08-20 01:36:56,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None
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2026-08-20 01:36:57,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None
2026-08-20 01:36:58,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None
2026-08-20 01:36:59,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None
2026-08-20 01:37:00,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None
2026-08-20 01:37:01,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None
2026-08-20 01:37:01,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None
2026-08-20 01:37:02,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None
2026-08-20 01:37:03,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None
2026-08-20 01:37:04,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None
2026-08-20 01:37:05,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None
2026-08-20 01:37:06,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None
2026-08-20 01:37:06,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None
2026-08-20 01:37:07,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None
2026-08-20 01:37:08,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None
2026-08-20 01:37:09,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None
2026-08-20 01:37:10,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None
2026-08-20 01:37:11,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None
2026-08-20 01:37:11,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None
2026-08-20 01:37:12,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None
2026-08-20 01:37:13,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None
2026-08-20 01:37:14,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None
2026-08-20 01:37:15,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None
2026-08-20 01:37:16,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None
2026-08-20 01:37:17,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None
2026-08-20 01:37:17,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None
2026-08-20 01:37:18,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None
2026-08-20 01:37:19,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None
2026-08-20 01:37:20,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None
2026-08-20 01:37:21,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None
2026-08-20 01:37:22,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None
2026-08-20 01:37:22,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None
2026-08-20 01:37:23,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None
2026-08-20 01:37:24,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None
2026-08-20 01:37:25,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None
2026-08-20 01:37:26,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None
2026-08-20 01:37:26,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None
2026-08-20 01:37:27,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None
2026-08-20 01:37:27,763 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:37:27,763 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:27,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:27,781 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:37:27,883 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:27,883 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:27,897 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:37:27,998 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:37:28,164 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ed08450> has no local changes
2026-08-20 01:37:28,164 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-figure
Updating 9cc36cde..52655d2a
Previously merged:
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:37:28,389 [ scc.git] DEBUG [detached HEAD 2ea8a2ff] merge master -Dorg -Ssuccess-only
2026-08-20 01:37:28,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:37:28,391 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:37:28,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None
2026-08-20 01:37:29,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None
2026-08-20 01:37:29,288 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:29,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:30,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:31,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:37:31,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:32,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:32,027 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:37:32,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None
2026-08-20 01:37:33,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None
2026-08-20 01:37:33,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:34,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:34,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:35,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:35,107 [ scc.repo] DEBUG - PR 18 jburel 'default size z value'
2026-08-20 01:37:35,107 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:37:35,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-20 01:37:35,108 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:35,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:35,128 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:37:35,147 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:37:35,147 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:37:35,171 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:37:35,227 [ scc.git] DEBUG Already up to date.
2026-08-20 01:37:35,227 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head'
2026-08-20 01:37:35,759 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-08-20 01:37:35,759 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD
2026-08-20 01:37:35,786 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head'
2026-08-20 01:37:36,228 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-08-20 01:37:36,229 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD
2026-08-20 01:37:36,250 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:37:36,250 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:36,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:36,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-08-20 01:37:36,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:36,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-08-20 01:37:36,442 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py
2026-08-20 01:37:36,519 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:37:36,574 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++
2026-08-20 01:37:36,574 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2026-08-20 01:37:36,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:37:36,770 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-08-20 01:37:36,805 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:36,818 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-08-20 01:37:37,073 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:37:37,132 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:37:37,132 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:37:37,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:37:37,320 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:37:37,445 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:37,446 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:37,461 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:37:37,567 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:37:37,649 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ebd06d0> has no local changes
2026-08-20 01:37:37,649 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:37:37,781 [ scc.git] DEBUG [detached HEAD d016af9] merge master -Dorg -Ssuccess-only
2026-08-20 01:37:37,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:37:37,782 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:37:38,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None
2026-08-20 01:37:38,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None
2026-08-20 01:37:39,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None
2026-08-20 01:37:39,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None
2026-08-20 01:37:39,663 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:40,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:40,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:41,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:41,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:41,787 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-08-20 01:37:42,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None
2026-08-20 01:37:42,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None
2026-08-20 01:37:43,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None
2026-08-20 01:37:43,300 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:44,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:44,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:45,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:45,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:45,647 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-08-20 01:37:46,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None
2026-08-20 01:37:46,176 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:46,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:47,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:47,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:48,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:48,196 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-08-20 01:37:48,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None
2026-08-20 01:37:48,704 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:49,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:49,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:50,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:50,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:50,791 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-08-20 01:37:51,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None
2026-08-20 01:37:51,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None
2026-08-20 01:37:51,803 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:52,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:52,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:53,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:53,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:53,988 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-08-20 01:37:54,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None
2026-08-20 01:37:54,499 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:55,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:55,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:56,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:56,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:56,633 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-08-20 01:37:57,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None
2026-08-20 01:37:57,138 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:37:57,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:58,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:37:58,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-08-20 01:37:59,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:37:59,329 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-08-20 01:37:59,329 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:37:59,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-20 01:37:59,330 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:37:59,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:37:59,354 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:37:59,372 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:37:59,372 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:37:59,389 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:37:59,454 [ scc.git] DEBUG Already up to date.
2026-08-20 01:37:59,454 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head'
2026-08-20 01:37:59,904 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:37:59,904 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD
2026-08-20 01:37:59,929 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head'
2026-08-20 01:38:00,355 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:00,355 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD
2026-08-20 01:38:00,376 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head'
2026-08-20 01:38:00,802 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:00,802 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD
2026-08-20 01:38:00,822 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head'
2026-08-20 01:38:01,292 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:01,292 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD
2026-08-20 01:38:01,311 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head'
2026-08-20 01:38:01,761 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:01,761 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD
2026-08-20 01:38:01,783 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head'
2026-08-20 01:38:02,252 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:02,252 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD
2026-08-20 01:38:02,275 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head'
2026-08-20 01:38:02,723 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-20 01:38:02,723 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD
2026-08-20 01:38:02,748 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:38:02,748 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:38:02,748 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:02,761 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-08-20 01:38:02,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:02,797 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-08-20 01:38:02,998 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:03,061 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-08-20 01:38:03,061 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-08-20 01:38:03,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:03,259 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-08-20 01:38:03,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:03,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-08-20 01:38:03,418 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:03,517 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:03,574 [ scc.git] DEBUG package-lock.json | 625 +++---------------------------------------------------
2026-08-20 01:38:03,574 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-)
2026-08-20 01:38:03,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:03,783 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-20 01:38:03,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:03,831 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-20 01:38:04,015 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:04,015 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-20 01:38:04,040 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:38:04,041 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:38:04,071 [ scc.git] DEBUG Calling 'git reset --hard 631a36bd858f8b96d1a76814a429f1a1c235f04a'
2026-08-20 01:38:04,236 [ scc.git] DEBUG HEAD is now at 631a36b merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents)
2026-08-20 01:38:04,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:04,415 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-20 01:38:04,434 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-20 01:38:04,478 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
--conflicts
2026-08-20 01:38:04,489 [ scc.config] DEBUG Found github.token
2026-08-20 01:38:04,489 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts.
2026-08-20 01:38:04,489 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-08-20 01:38:04,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:04,520 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-08-20 01:38:04,671 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:04,788 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:04,861 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++-----
2026-08-20 01:38:04,861 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-)
2026-08-20 01:38:05,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:05,043 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-08-20 01:38:05,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:05,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-08-20 01:38:05,233 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:05,352 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:05,419 [ scc.git] DEBUG package-lock.json | 6 +++---
2026-08-20 01:38:05,419 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-08-20 01:38:05,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:05,605 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-20 01:38:05,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:05,642 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-20 01:38:05,786 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:05,786 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-20 01:38:05,812 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:38:05,813 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:38:05,844 [ scc.git] DEBUG Calling 'git reset --hard 42b765684388c609b69f97e942e58a4c24f9e8a0'
2026-08-20 01:38:05,974 [ scc.git] DEBUG HEAD is now at 42b7656 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-08-20 01:38:06,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:06,173 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-20 01:38:06,193 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-20 01:38:06,210 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
--conflicts
2026-08-20 01:38:06,220 [ scc.config] DEBUG Found github.token
2026-08-20 01:38:06,220 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts.
2026-08-20 01:38:06,220 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-20 01:38:06,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:06,263 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-20 01:38:06,452 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:06,452 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-20 01:38:06,476 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:38:06,478 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:38:06,503 [ scc.git] DEBUG Calling 'git reset --hard 42b765684388c609b69f97e942e58a4c24f9e8a0'
2026-08-20 01:38:06,631 [ scc.git] DEBUG HEAD is now at 42b7656 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-08-20 01:38:06,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:06,817 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-20 01:38:06,839 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-20 01:38:06,854 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
- PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- package-lock.json
--conflicts
2026-08-20 01:38:06,863 [ scc.config] DEBUG Found github.token
2026-08-20 01:38:06,864 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts.
2026-08-20 01:38:06,864 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:38:06,967 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:38:06,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:06,978 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:38:07,081 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:38:07,135 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ebad150> has no local changes
2026-08-20 01:38:07,135 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:38:07,360 [ scc.git] DEBUG [detached HEAD 8aa68da] merge master -Dorg -Ssuccess-only
2026-08-20 01:38:07,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:38:07,362 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:38:07,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None
2026-08-20 01:38:08,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/563 HTTP/1.1" 200 None
2026-08-20 01:38:08,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/9f68a0cd8a6c663a360aa9433918b5d25aeab3ee?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:09,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/9f68a0cd8a6c663a360aa9433918b5d25aeab3ee/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:38:09,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/9f68a0cd8a6c663a360aa9433918b5d25aeab3ee/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:38:10,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/9f68a0cd8a6c663a360aa9433918b5d25aeab3ee?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:10,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/9f68a0cd8a6c663a360aa9433918b5d25aeab3ee?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:38:10,840 [ scc.repo] DEBUG - PR 563 will-moore 'Use POST data for imgRdef save'
2026-08-20 01:38:11,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/562 HTTP/1.1" 200 None
2026-08-20 01:38:11,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/562/comments HTTP/1.1" 200 None
2026-08-20 01:38:12,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/901bd0be162b3d830247d9d70eb8efa6a76fa7b9?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:13,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/901bd0be162b3d830247d9d70eb8efa6a76fa7b9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:38:13,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/901bd0be162b3d830247d9d70eb8efa6a76fa7b9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:38:14,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/901bd0be162b3d830247d9d70eb8efa6a76fa7b9?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:14,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/901bd0be162b3d830247d9d70eb8efa6a76fa7b9?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:38:14,488 [ scc.repo] DEBUG - PR 562 will-moore 'Keyboard select roi'
2026-08-20 01:38:15,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None
2026-08-20 01:38:15,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None
2026-08-20 01:38:16,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:16,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:38:17,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:38:17,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:18,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:38:18,033 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers'
2026-08-20 01:38:18,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None
2026-08-20 01:38:19,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None
2026-08-20 01:38:19,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:20,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:38:20,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-08-20 01:38:21,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:38:21,013 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip'
2026-08-20 01:38:21,014 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:38:21,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-20 01:38:21,015 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:38:21,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:21,031 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:38:21,054 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:38:21,054 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:38:22,152 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:38:22,822 [ scc.git] DEBUG Updating 7a798cee..3af5a346
2026-08-20 01:38:23,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None
2026-08-20 01:38:24,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None
2026-08-20 01:38:24,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None
2026-08-20 01:38:25,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None
2026-08-20 01:38:26,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None
2026-08-20 01:38:27,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None
2026-08-20 01:38:28,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None
2026-08-20 01:38:28,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None
2026-08-20 01:38:29,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None
2026-08-20 01:38:30,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None
2026-08-20 01:38:31,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None
2026-08-20 01:38:31,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None
2026-08-20 01:38:32,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None
2026-08-20 01:38:33,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None
2026-08-20 01:38:34,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None
2026-08-20 01:38:34,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None
2026-08-20 01:38:35,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None
2026-08-20 01:38:36,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None
2026-08-20 01:38:37,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None
2026-08-20 01:38:37,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None
2026-08-20 01:38:38,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None
2026-08-20 01:38:39,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None
2026-08-20 01:38:40,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None
2026-08-20 01:38:41,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None
2026-08-20 01:38:41,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None
2026-08-20 01:38:42,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None
2026-08-20 01:38:43,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None
2026-08-20 01:38:44,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None
2026-08-20 01:38:44,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None
2026-08-20 01:38:45,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None
2026-08-20 01:38:46,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None
2026-08-20 01:38:47,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None
2026-08-20 01:38:47,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None
2026-08-20 01:38:48,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None
2026-08-20 01:38:49,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None
2026-08-20 01:38:50,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None
2026-08-20 01:38:51,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None
2026-08-20 01:38:51,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None
2026-08-20 01:38:52,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None
2026-08-20 01:38:53,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None
2026-08-20 01:38:53,511 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2026-08-20 01:38:54,181 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-20 01:38:54,181 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2026-08-20 01:38:54,211 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head'
2026-08-20 01:38:54,759 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-20 01:38:54,759 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD
2026-08-20 01:38:54,788 [ scc.git] DEBUG Calling 'git fetch origin pull/562/head'
2026-08-20 01:38:55,472 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-20 01:38:55,472 [ scc.git] DEBUG * branch refs/pull/562/head -> FETCH_HEAD
2026-08-20 01:38:55,495 [ scc.git] DEBUG Calling 'git fetch origin pull/563/head'
2026-08-20 01:38:56,169 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-20 01:38:56,169 [ scc.git] DEBUG * branch refs/pull/563/head -> FETCH_HEAD
2026-08-20 01:38:56,193 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:38:56,193 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:38:56,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:56,205 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2026-08-20 01:38:56,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:56,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2026-08-20 01:38:56,638 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2026-08-20 01:38:56,733 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:56,798 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2026-08-20 01:38:56,798 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2026-08-20 01:38:56,798 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2026-08-20 01:38:57,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:57,020 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-20 01:38:57,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:57,097 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging css/app.css
2026-08-20 01:38:58,060 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:38:58,060 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging package.json
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging src/app/context.js
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging src/model/image_config.js
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js
2026-08-20 01:38:58,060 [ scc.git] DEBUG Auto-merging webpack.dev.config.js
2026-08-20 01:38:58,083 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:38:58,086 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:38:58,151 [ scc.git] DEBUG Calling 'git reset --hard 3d5d9bd73346b78f00bed4c3f15c694211a56262'
2026-08-20 01:38:58,525 [ scc.git] DEBUG HEAD is now at 3d5d9bd7 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip)
2026-08-20 01:38:58,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:58,709 [ scc.git] DEBUG Calling 'git merge-base 3af5a3461d5bbae51d9026388abf0139a32474ea fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-20 01:38:58,758 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..3af5a3461d5bbae51d9026388abf0139a32474ea'
2026-08-20 01:38:58,799 [ scc.git] INFO - PR 532 will-moore 'Zarr layers'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- package-lock.json
- css/app.css
--conflicts
2026-08-20 01:38:58,822 [ scc.config] DEBUG Found github.token
2026-08-20 01:38:58,822 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts.
2026-08-20 01:38:58,822 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...901bd0be162b3d830247d9d70eb8efa6a76fa7b9'
2026-08-20 01:38:58,882 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:58,896 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 562 (Keyboard select roi) 901bd0be162b3d830247d9d70eb8efa6a76fa7b9'
2026-08-20 01:38:59,255 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:38:59,337 [ scc.git] DEBUG src/app/context.js | 22 ++++++++++-----------
2026-08-20 01:38:59,337 [ scc.git] DEBUG src/regions/regions-edit.js | 48 ++++++++++++++++++++++++++++++++++++++++++++-
2026-08-20 01:38:59,337 [ scc.git] DEBUG src/utils/ui.js | 13 +++++++++---
2026-08-20 01:38:59,337 [ scc.git] DEBUG 3 files changed, 68 insertions(+), 15 deletions(-)
2026-08-20 01:38:59,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:38:59,530 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9f68a0cd8a6c663a360aa9433918b5d25aeab3ee'
2026-08-20 01:38:59,615 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:38:59,629 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 563 (Use POST data for imgRdef save) 9f68a0cd8a6c663a360aa9433918b5d25aeab3ee'
2026-08-20 01:38:59,982 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:00,050 [ scc.git] DEBUG plugin/setup.py | 2 +-
2026-08-20 01:39:00,050 [ scc.git] DEBUG src/model/image_config.js | 7 ++++---
2026-08-20 01:39:00,050 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 4 deletions(-)
2026-08-20 01:39:00,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:00,266 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:00,382 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:00,382 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:00,395 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:00,500 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:00,599 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ecf9b10> has no local changes
2026-08-20 01:39:00,599 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..3af5a346
Previously merged:
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:00,735 [ scc.git] DEBUG [detached HEAD 977c1b7f] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:00,737 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:00,738 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:01,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-08-20 01:39:01,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-08-20 01:39:02,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-08-20 01:39:02,046 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:39:02,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:03,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:03,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:39:04,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:04,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:04,760 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:39:05,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-08-20 01:39:05,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:06,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:06,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:07,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:07,283 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:39:07,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-08-20 01:39:08,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-08-20 01:39:08,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:09,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:09,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:10,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:10,352 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-08-20 01:39:10,352 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:39:10,352 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-20 01:39:10,353 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:10,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:10,371 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:39:10,390 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:39:10,390 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:39:10,414 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:39:10,469 [ scc.git] DEBUG Already up to date.
2026-08-20 01:39:10,469 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-08-20 01:39:10,952 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-20 01:39:10,952 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-08-20 01:39:10,974 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-08-20 01:39:11,469 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-20 01:39:11,469 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-08-20 01:39:11,491 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-08-20 01:39:11,971 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-20 01:39:11,971 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-08-20 01:39:11,996 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:39:11,996 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:11,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:12,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-08-20 01:39:12,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:12,053 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-08-20 01:39:12,339 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:12,410 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-08-20 01:39:12,410 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-08-20 01:39:12,411 [ scc.git] DEBUG requirements.txt | 2 +-
2026-08-20 01:39:12,411 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-08-20 01:39:12,411 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-08-20 01:39:12,411 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-08-20 01:39:12,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:12,603 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-08-20 01:39:12,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:12,669 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-08-20 01:39:12,881 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:12,942 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:39:12,942 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:39:13,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:13,125 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-20 01:39:13,153 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:13,169 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-20 01:39:13,344 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-08-20 01:39:13,344 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-08-20 01:39:13,370 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:39:13,372 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:39:13,393 [ scc.git] DEBUG Calling 'git reset --hard c3a148053e76c329524e3641b902afc03d6cd63d'
2026-08-20 01:39:13,516 [ scc.git] DEBUG HEAD is now at c3a1480 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-08-20 01:39:13,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:13,699 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-20 01:39:13,721 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-08-20 01:39:13,736 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-08-20 01:39:13,746 [ scc.config] DEBUG Found github.token
2026-08-20 01:39:13,746 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-08-20 01:39:13,746 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:13,847 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:13,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:13,859 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:13,970 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:14,028 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ede1ed0> has no local changes
2026-08-20 01:39:14,028 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:14,208 [ scc.git] DEBUG [detached HEAD 113e768] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:14,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:14,211 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:14,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-08-20 01:39:15,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-08-20 01:39:15,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-08-20 01:39:16,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:16,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:17,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:17,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:17,535 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-08-20 01:39:18,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-08-20 01:39:18,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-08-20 01:39:19,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:19,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:20,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:20,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:20,616 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-08-20 01:39:21,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-08-20 01:39:21,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-08-20 01:39:22,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:22,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:23,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:23,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:23,678 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-08-20 01:39:23,678 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:39:23,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-20 01:39:23,679 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:23,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:23,699 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:39:23,717 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:39:23,717 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:39:23,813 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:39:24,157 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-08-20 01:39:24,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-08-20 01:39:25,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-08-20 01:39:26,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-08-20 01:39:26,339 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-08-20 01:39:26,987 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-20 01:39:26,987 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-08-20 01:39:27,010 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-08-20 01:39:27,712 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-20 01:39:27,712 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-08-20 01:39:27,736 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-08-20 01:39:28,204 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-20 01:39:28,204 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-08-20 01:39:28,227 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:39:28,227 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:28,227 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:28,239 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-20 01:39:28,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:28,298 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-20 01:39:28,620 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-08-20 01:39:28,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-08-20 01:39:28,620 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-08-20 01:39:28,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-08-20 01:39:28,641 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:39:28,642 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:39:28,660 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-20 01:39:28,797 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-08-20 01:39:28,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:28,983 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-20 01:39:29,024 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-20 01:39:29,045 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-08-20 01:39:29,055 [ scc.config] DEBUG Found github.token
2026-08-20 01:39:29,055 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-08-20 01:39:29,055 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-20 01:39:29,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:29,113 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-20 01:39:29,366 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-08-20 01:39:29,366 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-08-20 01:39:29,366 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-08-20 01:39:29,392 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:39:29,393 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:39:29,417 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-20 01:39:29,554 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-08-20 01:39:29,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:29,737 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-20 01:39:29,778 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-20 01:39:29,799 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-08-20 01:39:29,808 [ scc.config] DEBUG Found github.token
2026-08-20 01:39:29,808 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-08-20 01:39:29,808 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-08-20 01:39:29,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:29,856 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-08-20 01:39:30,080 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:30,148 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-08-20 01:39:30,148 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-08-20 01:39:30,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:30,349 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:30,469 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:30,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:30,482 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:30,579 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:30,622 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ebad310> has no local changes
2026-08-20 01:39:30,622 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:30,769 [ scc.git] DEBUG [detached HEAD e997e69] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:30,770 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:30,770 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:31,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-08-20 01:39:31,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-08-20 01:39:32,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:32,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:33,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:33,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:33,635 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:39:34,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-08-20 01:39:34,144 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:39:34,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:35,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:35,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:36,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:36,262 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-08-20 01:39:36,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-08-20 01:39:36,787 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:39:37,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:37,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:38,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:38,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:38,952 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-08-20 01:39:39,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-08-20 01:39:39,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-08-20 01:39:40,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-08-20 01:39:40,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-08-20 01:39:41,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-08-20 01:39:41,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-08-20 01:39:42,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-08-20 01:39:42,469 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:39:42,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-20 01:39:42,472 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:42,472 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:42,491 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:39:42,507 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:39:42,507 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:39:42,526 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:39:42,581 [ scc.git] DEBUG Already up to date.
2026-08-20 01:39:42,581 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-08-20 01:39:43,085 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-20 01:39:43,085 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-08-20 01:39:43,108 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-08-20 01:39:43,544 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-20 01:39:43,544 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-08-20 01:39:43,566 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-08-20 01:39:44,033 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-20 01:39:44,033 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-08-20 01:39:44,059 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:39:44,059 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:44,059 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:44,073 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-08-20 01:39:44,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:44,108 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-08-20 01:39:44,359 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:44,429 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-08-20 01:39:44,429 [ scc.git] DEBUG package.json | 2 +-
2026-08-20 01:39:44,429 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-08-20 01:39:44,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:44,622 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-08-20 01:39:44,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:44,660 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-08-20 01:39:44,816 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-20 01:39:44,816 [ scc.git] DEBUG Auto-merging package.json
2026-08-20 01:39:44,951 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:45,007 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-08-20 01:39:45,007 [ scc.git] DEBUG package.json | 2 +-
2026-08-20 01:39:45,007 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-08-20 01:39:45,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:45,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-08-20 01:39:45,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:45,238 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-08-20 01:39:45,471 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:45,530 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:39:45,530 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:39:45,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:45,732 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:45,843 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:45,843 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:45,854 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:45,942 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:45,994 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514eb9a7d0> has no local changes
2026-08-20 01:39:45,994 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:46,124 [ scc.git] DEBUG [detached HEAD f595657] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:46,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:46,125 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:46,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-08-20 01:39:46,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-08-20 01:39:46,911 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:39:47,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:48,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:48,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:39:49,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:49,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:49,841 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:39:49,841 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:39:49,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-20 01:39:49,842 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:49,842 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:49,861 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:39:49,881 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:39:49,881 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:39:49,901 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:39:49,951 [ scc.git] DEBUG Already up to date.
2026-08-20 01:39:49,951 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-08-20 01:39:50,413 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-08-20 01:39:50,413 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-08-20 01:39:50,436 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:39:50,437 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:50,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:50,450 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-08-20 01:39:50,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:50,481 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-08-20 01:39:50,646 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:39:50,706 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:39:50,706 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:39:50,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:39:50,886 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:50,995 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:50,995 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:51,008 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:51,103 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:51,149 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ec1de10> has no local changes
2026-08-20 01:39:51,150 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:51,268 [ scc.git] DEBUG [detached HEAD bd94fd1] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:51,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:51,270 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:51,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-08-20 01:39:52,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-08-20 01:39:52,060 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:39:52,060 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-20 01:39:52,061 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:52,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:52,080 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:39:52,099 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:39:52,099 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:39:52,186 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:39:52,404 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-08-20 01:39:52,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-08-20 01:39:53,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-08-20 01:39:53,871 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:39:53,871 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:53,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:53,891 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:39:53,997 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:39:53,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:39:54,011 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:39:54,111 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:39:54,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ebd56d0> has no local changes
2026-08-20 01:39:54,170 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:39:54,290 [ scc.git] DEBUG [detached HEAD 3c780ab] merge master -Dorg -Ssuccess-only
2026-08-20 01:39:54,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:39:54,292 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:39:54,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-08-20 01:39:55,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-08-20 01:39:55,116 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:39:55,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:56,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:39:56,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:39:57,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-08-20 01:39:57,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:39:57,752 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:39:58,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-08-20 01:39:58,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-08-20 01:39:59,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:00,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:00,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:01,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:01,045 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-08-20 01:40:01,045 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:01,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-20 01:40:01,046 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:01,046 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:01,066 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:01,088 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:01,088 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:01,111 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:01,166 [ scc.git] DEBUG Already up to date.
2026-08-20 01:40:01,166 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-08-20 01:40:01,785 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-08-20 01:40:01,786 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-08-20 01:40:01,811 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-08-20 01:40:02,289 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-08-20 01:40:02,289 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-08-20 01:40:02,316 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:02,316 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:02,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:02,329 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-20 01:40:02,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:02,377 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-20 01:40:02,654 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG Auto-merging setup.py
2026-08-20 01:40:02,654 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-08-20 01:40:02,681 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:40:02,682 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:40:02,716 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-08-20 01:40:02,901 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-08-20 01:40:03,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:03,123 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-20 01:40:03,154 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-08-20 01:40:03,177 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
--conflicts
2026-08-20 01:40:03,190 [ scc.config] DEBUG Found github.token
2026-08-20 01:40:03,190 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-08-20 01:40:03,191 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-08-20 01:40:03,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:03,227 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-08-20 01:40:03,467 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:03,543 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:40:03,543 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:40:03,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:03,733 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:03,846 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:03,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:03,859 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:03,962 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:04,017 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c21bf50> has no local changes
2026-08-20 01:40:04,017 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:04,138 [ scc.git] DEBUG [detached HEAD 66ad122] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:04,140 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:04,140 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:04,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-08-20 01:40:05,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-08-20 01:40:05,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-08-20 01:40:06,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-08-20 01:40:06,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:07,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:07,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:08,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:08,161 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-08-20 01:40:08,162 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:08,162 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-20 01:40:08,162 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:08,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:08,179 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:08,194 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:08,194 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:08,214 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:08,363 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-08-20 01:40:09,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-08-20 01:40:09,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-08-20 01:40:10,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-08-20 01:40:10,822 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-08-20 01:40:11,340 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-08-20 01:40:11,341 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-08-20 01:40:11,360 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:11,360 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:11,360 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:11,371 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-08-20 01:40:11,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:11,415 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-08-20 01:40:11,563 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-08-20 01:40:11,615 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:11,671 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-08-20 01:40:11,671 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-08-20 01:40:11,671 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-08-20 01:40:11,671 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-08-20 01:40:11,671 [ scc.git] DEBUG ms/test | 2 ++
2026-08-20 01:40:11,671 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-08-20 01:40:11,671 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-08-20 01:40:11,671 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-08-20 01:40:11,671 [ scc.git] DEBUG create mode 100755 ms/test
2026-08-20 01:40:11,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:11,867 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:11,972 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:11,972 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:11,982 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:12,064 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:12,130 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ee059d0> has no local changes
2026-08-20 01:40:12,130 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:12,260 [ scc.git] DEBUG [detached HEAD ccc8734] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:12,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:12,262 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:12,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-08-20 01:40:13,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-08-20 01:40:13,057 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:40:13,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:14,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:14,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:15,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:15,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:15,643 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:40:15,643 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:15,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-20 01:40:15,644 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:15,644 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:15,660 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:15,674 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:15,674 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:15,689 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:15,734 [ scc.git] DEBUG Already up to date.
2026-08-20 01:40:15,734 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-08-20 01:40:16,204 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-08-20 01:40:16,204 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-08-20 01:40:16,224 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:16,224 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:16,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:16,235 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-08-20 01:40:16,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:16,262 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-08-20 01:40:16,399 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:16,444 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:40:16,444 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:40:16,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:16,679 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:16,791 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:16,791 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:16,804 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:16,891 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:16,942 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ede2d90> has no local changes
2026-08-20 01:40:16,942 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:17,050 [ scc.git] DEBUG [detached HEAD ffc6a34] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:17,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:17,052 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:17,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-08-20 01:40:17,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-08-20 01:40:17,865 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:40:18,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:19,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:19,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:20,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:20,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:20,563 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:40:20,563 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:20,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-20 01:40:20,564 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:20,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:20,580 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:20,594 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:20,594 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:20,613 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:20,759 [ scc.git] DEBUG Updating deab817..160d894
2026-08-20 01:40:21,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-08-20 01:40:21,360 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-08-20 01:40:21,810 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-08-20 01:40:21,811 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-08-20 01:40:21,828 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:21,828 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:21,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:21,839 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-08-20 01:40:21,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:21,864 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-08-20 01:40:22,044 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:22,090 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:40:22,090 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:40:22,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:22,283 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:22,382 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:22,382 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:22,394 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:22,489 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:22,536 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c1f7e10> has no local changes
2026-08-20 01:40:22,537 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:22,671 [ scc.git] DEBUG [detached HEAD 10f6248] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:22,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:22,673 [ scc.git] INFO Overriding base-branch from master to main
2026-08-20 01:40:22,673 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:22,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-08-20 01:40:23,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-08-20 01:40:23,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-08-20 01:40:24,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:25,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:25,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:26,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:26,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:26,483 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-08-20 01:40:26,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-08-20 01:40:27,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-08-20 01:40:28,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-08-20 01:40:28,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:29,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:29,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:30,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:30,129 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-08-20 01:40:30,129 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:30,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-20 01:40:30,130 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:30,130 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:30,148 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-08-20 01:40:30,164 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:30,164 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-08-20 01:40:30,181 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-08-20 01:40:30,295 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-08-20 01:40:31,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-08-20 01:40:31,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-08-20 01:40:31,918 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-08-20 01:40:32,470 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-08-20 01:40:32,470 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-08-20 01:40:32,494 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-08-20 01:40:33,232 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-08-20 01:40:33,232 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-08-20 01:40:33,255 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:33,255 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:33,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:33,267 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-20 01:40:33,295 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:33,309 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-20 01:40:33,506 [ scc.git] DEBUG Auto-merging README.rst
2026-08-20 01:40:33,506 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-08-20 01:40:33,506 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-08-20 01:40:33,506 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-08-20 01:40:33,526 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-20 01:40:33,527 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-20 01:40:33,559 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-08-20 01:40:33,697 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-08-20 01:40:34,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:34,029 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-20 01:40:34,059 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-08-20 01:40:34,080 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#47](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-08-20 01:40:34,091 [ scc.config] DEBUG Found github.token
2026-08-20 01:40:34,091 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-08-20 01:40:34,091 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-08-20 01:40:34,141 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:34,153 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-08-20 01:40:34,358 [ scc.git] DEBUG Auto-merging README.rst
2026-08-20 01:40:34,359 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-08-20 01:40:34,418 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:34,486 [ scc.git] DEBUG README.rst | 3 +
2026-08-20 01:40:34,486 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-08-20 01:40:34,486 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-08-20 01:40:34,486 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-08-20 01:40:34,486 [ scc.git] DEBUG setup.py | 5 +-
2026-08-20 01:40:34,486 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-08-20 01:40:34,486 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-08-20 01:40:34,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:34,664 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:34,781 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:34,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:34,793 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:34,888 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:34,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c1f6250> has no local changes
2026-08-20 01:40:34,955 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:35,103 [ scc.git] DEBUG [detached HEAD 357b98d] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:35,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:35,105 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:35,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-08-20 01:40:35,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-08-20 01:40:35,954 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:40:36,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:37,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:37,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:38,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:38,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:38,543 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:40:38,543 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:38,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-20 01:40:38,544 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:38,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:38,568 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:38,595 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:38,595 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:38,623 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:38,693 [ scc.git] DEBUG Already up to date.
2026-08-20 01:40:38,693 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-08-20 01:40:39,192 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-08-20 01:40:39,192 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-08-20 01:40:39,218 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:39,218 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:39,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:39,236 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-08-20 01:40:39,261 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:39,277 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-08-20 01:40:39,473 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:39,530 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:40:39,530 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:40:39,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:39,719 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:39,835 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:39,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:39,848 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:39,959 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:40,013 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ebe82d0> has no local changes
2026-08-20 01:40:40,013 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:40,204 [ scc.git] DEBUG [detached HEAD 50a1845] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:40,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:40,206 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:40,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-08-20 01:40:41,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-08-20 01:40:41,022 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-20 01:40:41,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:42,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:42,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:43,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:43,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:43,654 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:40:43,654 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:43,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-20 01:40:43,655 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:43,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:43,672 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:43,689 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:43,689 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:43,707 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:43,759 [ scc.git] DEBUG Already up to date.
2026-08-20 01:40:43,759 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-08-20 01:40:44,210 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-08-20 01:40:44,211 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-08-20 01:40:44,236 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:44,236 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:44,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:44,253 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-08-20 01:40:44,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:44,287 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-08-20 01:40:44,481 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:44,538 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-20 01:40:44,538 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-20 01:40:44,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:44,734 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:44,847 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:44,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:44,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:44,959 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:45,005 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c25f390> has no local changes
2026-08-20 01:40:45,005 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:45,154 [ scc.git] DEBUG [detached HEAD 3ae2c96] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:45,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:45,156 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:45,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-08-20 01:40:45,375 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:45,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-20 01:40:45,376 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:45,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:45,405 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-20 01:40:45,424 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:45,424 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-20 01:40:45,445 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-20 01:40:45,504 [ scc.git] DEBUG Already up to date.
2026-08-20 01:40:45,504 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:45,504 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:45,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:45,532 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:45,640 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:45,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:45,653 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:45,757 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:45,871 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c21b250> has no local changes
2026-08-20 01:40:45,871 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:46,023 [ scc.git] DEBUG [detached HEAD edfbeb7] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:46,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:46,025 [ scc.git] INFO Overriding base-branch from master to develop
2026-08-20 01:40:46,025 [ scc.repo] DEBUG ## PRs found:
2026-08-20 01:40:46,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-08-20 01:40:46,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-08-20 01:40:47,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:47,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-20 01:40:48,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-20 01:40:48,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-08-20 01:40:49,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-08-20 01:40:49,257 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-08-20 01:40:49,257 [ scc.repo] DEBUG ## Branches found:
2026-08-20 01:40:49,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-20 01:40:49,258 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:49,258 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:49,277 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-08-20 01:40:49,294 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-20 01:40:49,295 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-08-20 01:40:49,403 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-08-20 01:40:49,673 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-08-20 01:40:50,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-08-20 01:40:50,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-08-20 01:40:51,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-08-20 01:40:52,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-08-20 01:40:53,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-08-20 01:40:54,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-08-20 01:40:55,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-08-20 01:40:55,098 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-08-20 01:40:55,730 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-08-20 01:40:55,731 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-08-20 01:40:55,752 [ scc.git] DEBUG ## Unique users: []
2026-08-20 01:40:55,752 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:55,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:55,765 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-08-20 01:40:55,791 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:55,803 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-08-20 01:40:56,068 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-20 01:40:56,133 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-08-20 01:40:56,133 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-08-20 01:40:56,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:56,312 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-20 01:40:56,431 [ scc.git] DEBUG Get sha1 of %s
2026-08-20 01:40:56,431 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-20 01:40:56,445 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:56,553 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:40:56,613 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514c2479d0> has no local changes
2026-08-20 01:40:56,613 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:40:56,747 [ scc.git] DEBUG [detached HEAD 47cd32c] merge master -Dorg -Ssuccess-only
2026-08-20 01:40:56,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:40:56,748 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-20 01:40:56,944 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-08-20 01:40:57,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:57,157 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-08-20 01:40:57,163 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-08-20 01:40:57,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:57,596 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-08-20 01:40:57,602 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-08-20 01:40:58,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:58,044 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-08-20 01:40:58,051 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-08-20 01:40:58,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:58,475 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-08-20 01:40:58,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:58,912 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-08-20 01:40:58,919 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-08-20 01:40:59,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:59,358 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-08-20 01:40:59,364 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-08-20 01:40:59,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:40:59,785 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-08-20 01:40:59,792 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-08-20 01:41:00,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:00,218 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-08-20 01:41:00,225 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-08-20 01:41:00,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:00,646 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-08-20 01:41:00,653 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-08-20 01:41:01,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:01,089 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-08-20 01:41:01,096 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-08-20 01:41:01,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:01,536 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-08-20 01:41:01,543 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-08-20 01:41:01,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:01,980 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-08-20 01:41:01,987 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-08-20 01:41:02,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:02,419 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-08-20 01:41:02,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:02,867 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-08-20 01:41:03,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:03,308 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-08-20 01:41:03,315 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-08-20 01:41:03,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:03,757 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-08-20 01:41:04,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:04,232 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-08-20 01:41:04,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:04,673 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-08-20 01:41:04,679 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-08-20 01:41:05,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:05,107 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-08-20 01:41:05,113 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-08-20 01:41:05,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:05,697 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-08-20 01:41:05,702 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-08-20 01:41:06,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:06,309 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-08-20 01:41:06,316 [ scc.config] DEBUG Found submodule.scripts.url
2026-08-20 01:41:06,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-20 01:41:06,734 [ scc.config] DEBUG Found submodule.scripts.branch
2026-08-20 01:41:06,734 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-20 01:41:08,359 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f514ff29e10> has local changes
2026-08-20 01:41:08,359 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..360171f
Previously merged:
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Updating 9cc36cde..52655d2a
Previously merged:
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..3af5a346
Previously merged:
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#47 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/47/)'
2026-08-20 01:41:08,983 [ scc.git] DEBUG [detached HEAD 6ee5b9d] merge master -Dorg -Ssuccess-only
2026-08-20 01:41:08,984 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-08-20 01:41:08,985 [ scc.merge] INFO Repository: ome/omero-plugins
2026-08-20 01:41:08,985 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,985 [ scc.merge] INFO
2026-08-20 01:41:08,985 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,985 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-20 01:41:08,985 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-20 01:41:08,985 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-20 01:41:08,985 [ scc.merge] INFO
2026-08-20 01:41:08,985 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-08-20 01:41:08,985 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,985 [ scc.merge] INFO
2026-08-20 01:41:08,985 [ scc.merge] INFO
2026-08-20 01:41:08,985 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-08-20 01:41:08,985 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,985 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-08-20 01:41:08,986 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-08-20 01:41:08,986 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-08-20 01:41:08,986 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-08-20 01:41:08,986 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-08-20 01:41:08,986 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-08-20 01:41:08,986 [ scc.merge] INFO Updating 11d3587..360171f
2026-08-20 01:41:08,986 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,986 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-08-20 01:41:08,986 [ scc.merge] INFO
2026-08-20 01:41:08,986 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-08-20 01:41:08,987 [ scc.merge] INFO
2026-08-20 01:41:08,987 [ scc.merge] INFO Repository: ome/omero-figure
2026-08-20 01:41:08,987 [ scc.merge] INFO Updating 9cc36cde..52655d2a
2026-08-20 01:41:08,987 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-08-20 01:41:08,987 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-08-20 01:41:08,988 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Repository: ome/omero-gallery
2026-08-20 01:41:08,988 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-08-20 01:41:08,988 [ scc.merge] INFO
2026-08-20 01:41:08,988 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-08-20 01:41:08,988 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-08-20 01:41:08,988 [ scc.merge] INFO Updating 7a798cee..3af5a346
2026-08-20 01:41:08,988 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-08-20 01:41:08,988 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,989 [ scc.merge] INFO
2026-08-20 01:41:08,989 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-08-20 01:41:08,989 [ scc.merge] INFO
2026-08-20 01:41:08,989 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-08-20 01:41:08,989 [ scc.merge] INFO
2026-08-20 01:41:08,989 [ scc.merge] INFO Repository: ome/omero-mapr
2026-08-20 01:41:08,989 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,989 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-08-20 01:41:08,989 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,989 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Repository: ome/omero-metadata
2026-08-20 01:41:08,990 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-08-20 01:41:08,990 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Repository: ome/omero-parade
2026-08-20 01:41:08,990 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-08-20 01:41:08,990 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-08-20 01:41:08,990 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,990 [ scc.merge] INFO Repository: ome/omero-rois
2026-08-20 01:41:08,990 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-08-20 01:41:08,990 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-08-20 01:41:08,990 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-08-20 01:41:08,990 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-08-20 01:41:08,990 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Repository: ome/omero-signup
2026-08-20 01:41:08,991 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-08-20 01:41:08,991 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-08-20 01:41:08,991 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-08-20 01:41:08,991 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Repository: ome/omero-upload
2026-08-20 01:41:08,991 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-08-20 01:41:08,991 [ scc.merge] INFO Updating deab817..160d894
2026-08-20 01:41:08,991 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-08-20 01:41:08,991 [ scc.merge] INFO Excluded PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-08-20 01:41:08,991 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-08-20 01:41:08,991 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,991 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-20 01:41:08,991 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-08-20 01:41:08,991 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-08-20 01:41:08,992 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-08-20 01:41:08,992 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-08-20 01:41:08,992 [ scc.merge] INFO Already up to date.
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Repository: ome/scripts
2026-08-20 01:41:08,992 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-08-20 01:41:08,992 [ scc.merge] INFO Previously merged:
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] INFO Merged PRs:
2026-08-20 01:41:08,992 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-08-20 01:41:08,992 [ scc.merge] INFO
2026-08-20 01:41:08,992 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-08-20 01:41:08,992 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-20 01:41:09,055 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,068 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,068 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-20 01:41:09,068 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,079 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,079 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-20 01:41:09,080 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-20 01:41:09,092 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-20 01:41:09,104 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-20 01:41:09,118 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-20 01:41:09,133 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-20 01:41:09,146 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,160 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,160 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-20 01:41:09,160 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-20 01:41:09,173 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-20 01:41:09,185 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-20 01:41:09,197 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-20 01:41:09,210 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,222 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,222 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-20 01:41:09,223 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-20 01:41:09,235 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-20 01:41:09,248 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-20 01:41:09,261 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-20 01:41:09,273 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-20 01:41:09,285 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-20 01:41:09,299 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-20 01:41:09,313 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-20 01:41:09,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-20 01:41:09,327 [ scc.git] DEBUG Calling 'git remote'
2026-08-20 01:41:09,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD fe487c7] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
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[detached HEAD 4cf19da] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-20 01:42:18,981 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-20 01:42:28,848 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-20 01:42:31,530 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-20 01:42:36,578 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-20 01:43:31,015 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS