Started by user devspace
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
Commit message: "Merge pull request #18 from jburel/python_311"
> git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-plugins.git
> git --version # timeout=10
> git --version # 'git version 2.52.0'
> git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master)
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10
Commit message: "Merge pull request #434 from will-moore/figure"
> git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.omero-figure.url # timeout=10
> git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
> git config --get submodule.minimal-omero-client.url # timeout=10
> git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.omero-test-infra.url # timeout=10
> git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
> git config --get submodule.omero-prometheus-tools.url # timeout=10
> git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
> git config --get submodule.omero-parade.url # timeout=10
> git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
> git config --get submodule.omero-mapr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
> git config --get submodule.omero-fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
> git config --get submodule.omero-iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
> git config --get submodule.omero-gallery.url # timeout=10
> git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
> git config --get submodule.rOMERO-gateway.url # timeout=10
> git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
> git config --get submodule.omero-weberror.url # timeout=10
> git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
> git config --get submodule.omero-cli-render.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
> git config --get submodule.omero-cli-duplicate.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
> git config --get submodule.omero-metadata.url # timeout=10
> git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
> git config --get submodule.omero-webtest.url # timeout=10
> git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
> git config --get submodule.omero-upload.url # timeout=10
> git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
> git config --get submodule.omero-virtual-microscope.url # timeout=10
> git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
> git config --get submodule.omero-rois.url # timeout=10
> git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
> git config --get submodule.omero-signup.url # timeout=10
> git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
> git config --get submodule.omero-web-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10
> git config --get submodule.omero-cli-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10
> git config --get submodule.figure.url # timeout=10
> git config -f .gitmodules --get submodule.figure.path # timeout=10
> git submodule update --init --recursive omero-figure # timeout=10
> git submodule update --init --recursive minimal-omero-client # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive omero-test-infra # timeout=10
> git submodule update --init --recursive omero-prometheus-tools # timeout=10
> git submodule update --init --recursive omero-parade # timeout=10
> git submodule update --init --recursive omero-mapr # timeout=10
> git submodule update --init --recursive omero-fpbioimage # timeout=10
> git submodule update --init --recursive omero-iviewer # timeout=10
> git submodule update --init --recursive omero-gallery # timeout=10
> git submodule update --init --recursive rOMERO-gateway # timeout=10
> git submodule update --init --recursive omero-weberror # timeout=10
> git submodule update --init --recursive omero-cli-render # timeout=10
> git submodule update --init --recursive omero-cli-duplicate # timeout=10
> git submodule update --init --recursive omero-metadata # timeout=10
> git submodule update --init --recursive omero-webtest # timeout=10
> git submodule update --init --recursive omero-upload # timeout=10
> git submodule update --init --recursive omero-virtual-microscope # timeout=10
> git submodule update --init --recursive omero-rois # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
> git submodule update --init --recursive omero-signup # timeout=10
> git submodule update --init --recursive omero-web-zarr # timeout=10
> git submodule update --init --recursive omero-cli-zarr # timeout=10
> git submodule update --init --recursive figure # timeout=10
Copied 1 artifact from "OMERO-build-push" build number 97
[Pipeline] sh
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ tar -zxf -
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ popd
~/workspace/OMERO-plugins-push
+ python3.11 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ python3.11 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.3.1
Uninstalling pip-22.3.1:
Successfully uninstalled pip-22.3.1
Successfully installed pip-26.2.1
+ python3.11 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached pygithub-2.10.0-py3-none-any.whl (455 kB)
Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB)
Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
Using cached requests-2.34.2-py3-none-any.whl (73 kB)
Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
Using cached idna-3.20-py3-none-any.whl (69 kB)
Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached pycparser-3.0-py3-none-any.whl (48 kB)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.0 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-10-02 08:17:06,008 [ scc.config] DEBUG Found github.token
2026-10-02 08:17:06,009 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-02 08:17:06,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:17:06,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:17:07,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-02 08:17:07,158 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 09:10
2026-10-02 08:17:07,159 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:17:07,170 [ scc.git] DEBUG Check current status
2026-10-02 08:17:07,170 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:17:07,203 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure
2026-10-02 08:17:07,205 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:17:07,512 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-02 08:17:07,642 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-02 08:17:07,782 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-02 08:17:07,916 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-02 08:17:08,018 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-02 08:17:08,182 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-10-02 08:17:08,288 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-02 08:17:08,418 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-02 08:17:08,602 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-10-02 08:17:08,713 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-02 08:17:08,820 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-02 08:17:08,929 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-02 08:17:09,005 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-02 08:17:09,101 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-02 08:17:09,219 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-02 08:17:09,306 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-02 08:17:09,385 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-02 08:17:09,510 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-02 08:17:09,628 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-02 08:17:09,743 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-02 08:17:09,862 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-02 08:17:09,932 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-02 08:17:09,971 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-10-02 08:17:09,988 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:17:10,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-10-02 08:17:10,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:17:11,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:17:11,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:17:12,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:17:12,260 [ scc.git] DEBUG Resetting...
2026-10-02 08:17:12,260 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-02 08:17:12,692 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure
2026-10-02 08:17:12,694 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-02 08:17:14,376 [ scc.git] DEBUG Check current status
2026-10-02 08:17:14,376 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:17:14,401 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure
2026-10-02 08:17:14,403 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:17:14,694 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-02 08:17:14,867 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-02 08:17:14,946 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-02 08:17:15,013 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-02 08:17:15,088 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-02 08:17:15,209 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-10-02 08:17:15,272 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-02 08:17:15,326 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-02 08:17:15,432 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-10-02 08:17:15,499 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-02 08:17:15,557 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-02 08:17:15,611 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-02 08:17:15,662 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-02 08:17:15,724 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-02 08:17:15,772 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-02 08:17:15,838 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-02 08:17:15,894 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-02 08:17:15,950 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-02 08:17:16,013 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-02 08:17:16,072 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-02 08:17:16,136 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-02 08:17:16,192 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-02 08:17:16,229 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-10-02 08:17:16,231 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-02 08:17:16,231 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-02 08:17:16,231 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-02 08:17:16,231 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-02 08:17:16,231 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-02 08:17:16,231 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:17:16,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-10-02 08:17:17,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-10-02 08:17:17,110 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:17:17,110 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-02 08:17:17,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-10-02 08:17:17,630 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:17:17,630 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-02 08:17:18,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-10-02 08:17:18,152 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:17:18,152 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-02 08:17:18,152 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:17:18,152 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:17:18,152 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:18,165 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:17:18,184 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:17:18,184 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:17:18,212 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:17:18,272 [ scc.git] DEBUG Already up to date.
2026-10-02 08:17:18,272 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-10-02 08:17:18,728 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:17:18,728 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-10-02 08:17:18,758 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-10-02 08:17:19,206 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:17:19,206 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-10-02 08:17:19,240 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-10-02 08:17:19,694 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:17:19,695 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-10-02 08:17:19,732 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:17:19,732 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:17:19,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:19,749 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-02 08:17:19,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:19,801 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-02 08:17:20,933 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:17:21,016 [ scc.git] DEBUG scripts | 2 +-
2026-10-02 08:17:21,017 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:17:21,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:17:21,193 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-02 08:17:21,239 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:21,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-02 08:17:22,637 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:17:22,732 [ scc.git] DEBUG omero-figure | 2 +-
2026-10-02 08:17:22,732 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:17:22,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:17:22,922 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-02 08:17:22,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:22,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-02 08:17:24,108 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:17:24,186 [ scc.git] DEBUG omero-iviewer | 2 +-
2026-10-02 08:17:24,186 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:17:24,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:17:24,385 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:17:25,659 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-10-02 08:17:27,828 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-10-02 08:17:28,394 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-10-02 08:17:28,395 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:17:28,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:17:28,415 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:17:33,046 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd9cbfd2cd0> has no local changes
2026-10-02 08:17:33,046 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:17:35,073 [ scc.git] DEBUG [detached HEAD 4ffcbc0] merge master -Dorg -Snone
2026-10-02 08:17:35,077 [ scc.merge] INFO Repository: ome/omero-plugins
2026-10-02 08:17:35,077 [ scc.merge] INFO Already up to date.
2026-10-02 08:17:35,077 [ scc.merge] INFO
2026-10-02 08:17:35,077 [ scc.merge] INFO Merged PRs:
2026-10-02 08:17:35,077 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-02 08:17:35,077 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-02 08:17:35,077 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-02 08:17:35,077 [ scc.merge] INFO
2026-10-02 08:17:35,077 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-02 08:17:35,077 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'minimal-omero-client'
Synchronizing submodule url for 'omero-cli-duplicate'
Synchronizing submodule url for 'omero-cli-render'
Synchronizing submodule url for 'omero-cli-zarr'
Synchronizing submodule url for 'omero-figure'
Synchronizing submodule url for 'omero-fpbioimage'
Synchronizing submodule url for 'omero-gallery'
Synchronizing submodule url for 'omero-iviewer'
Synchronizing submodule url for 'omero-mapr'
Synchronizing submodule url for 'omero-metadata'
Synchronizing submodule url for 'omero-parade'
Synchronizing submodule url for 'omero-prometheus-tools'
Synchronizing submodule url for 'omero-rois'
Synchronizing submodule url for 'omero-signup'
Synchronizing submodule url for 'omero-test-infra'
Synchronizing submodule url for 'omero-upload'
Synchronizing submodule url for 'omero-virtual-microscope'
Synchronizing submodule url for 'omero-web-zarr'
Synchronizing submodule url for 'omero-weberror'
Synchronizing submodule url for 'omero-webtest'
Synchronizing submodule url for 'rOMERO-gateway'
Synchronizing submodule url for 'scripts'
Submodule path 'figure': checked out 'f82d7dff0823b56270cd5f86e36f249f686e46ef'
Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8'
Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147'
From https://github.com/ome/omero-iviewer
d128ed76..1a926b09 master -> origin/master
Submodule path 'omero-iviewer': checked out '1a926b09a3f7b0de2214893a52e5483d1c11d96b'
Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b'
Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77'
Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f'
Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368'
Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0'
Merge all submodules using repository configuration:
base-branch: master
submodules:
scripts:
base-branch: develop
omero-web-zarr:
base-branch: main
2026-10-02 08:18:01,681 [ scc.config] DEBUG Found github.token
2026-10-02 08:18:01,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-02 08:18:01,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:18:02,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:18:02,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-02 08:18:02,852 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 09:10
2026-10-02 08:18:02,853 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:02,864 [ scc.git] DEBUG Check current status
2026-10-02 08:18:02,864 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:02,894 [ scc.git] DEBUG 4ffcbc0 merge master -Dorg -Snone
2026-10-02 08:18:02,895 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:03,267 [ scc.git] DEBUG +f82d7dff0823b56270cd5f86e36f249f686e46ef figure (remotes/origin/HEAD)
2026-10-02 08:18:03,417 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-02 08:18:03,471 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-02 08:18:03,545 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303)
2026-10-02 08:18:03,630 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8)
2026-10-02 08:18:03,747 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df)
2026-10-02 08:18:03,800 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-02 08:18:03,892 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-02 08:18:04,111 [ scc.git] DEBUG +1a926b09a3f7b0de2214893a52e5483d1c11d96b omero-iviewer (v0.19.0-22-g1a926b09)
2026-10-02 08:18:04,192 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-02 08:18:04,300 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4)
2026-10-02 08:18:04,352 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-02 08:18:04,437 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-02 08:18:04,511 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96)
2026-10-02 08:18:04,588 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-02 08:18:04,669 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015)
2026-10-02 08:18:04,734 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-02 08:18:04,809 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894)
2026-10-02 08:18:04,880 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685)
2026-10-02 08:18:04,971 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-02 08:18:05,039 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-02 08:18:05,097 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-02 08:18:05,185 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768)
2026-10-02 08:18:05,202 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:05,202 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2026-10-02 08:18:05,205 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-web-zarr:
base-branch: main
scripts:
base-branch: develop
2026-10-02 08:18:05,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-10-02 08:18:06,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:06,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:07,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:07,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:07,546 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:07,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-02 08:18:07,790 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:07,802 [ scc.git] DEBUG Check current status
2026-10-02 08:18:07,803 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:07,839 [ scc.git] DEBUG f82d7df Merge pull request #19 from Rdornier/fix-rectangle-crop
2026-10-02 08:18:07,840 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:07,977 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:08,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None
2026-10-02 08:18:08,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:09,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:09,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:10,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:10,282 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:10,466 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:10,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-02 08:18:10,467 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:10,491 [ scc.git] DEBUG Check current status
2026-10-02 08:18:10,491 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:10,521 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0
2026-10-02 08:18:10,522 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:10,749 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:11,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None
2026-10-02 08:18:11,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:12,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:13,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:14,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:14,075 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:14,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:14,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-02 08:18:14,254 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:14,269 [ scc.git] DEBUG Check current status
2026-10-02 08:18:14,269 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:14,291 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build
2026-10-02 08:18:14,292 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:14,451 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:14,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None
2026-10-02 08:18:15,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:15,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:16,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:16,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:16,766 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:16,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:16,915 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-02 08:18:16,915 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:16,929 [ scc.git] DEBUG Check current status
2026-10-02 08:18:16,929 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:16,949 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease
2026-10-02 08:18:16,950 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:17,085 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:17,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None
2026-10-02 08:18:17,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:18,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:18,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:19,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:19,377 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:19,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:19,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-02 08:18:19,558 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:19,578 [ scc.git] DEBUG Check current status
2026-10-02 08:18:19,578 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:19,613 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-02 08:18:19,614 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:19,806 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:20,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None
2026-10-02 08:18:20,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:21,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:21,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:22,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:22,096 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:22,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:22,295 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-02 08:18:22,295 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:22,318 [ scc.git] DEBUG Check current status
2026-10-02 08:18:22,318 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:22,368 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0
2026-10-02 08:18:22,377 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:22,587 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:22,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None
2026-10-02 08:18:23,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:23,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:24,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:24,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:24,892 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:25,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:25,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-02 08:18:25,025 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:25,044 [ scc.git] DEBUG Check current status
2026-10-02 08:18:25,044 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:25,085 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build
2026-10-02 08:18:25,087 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:25,276 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:25,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None
2026-10-02 08:18:26,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:26,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:27,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:27,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:27,608 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:27,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:27,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-02 08:18:27,818 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:27,855 [ scc.git] DEBUG Check current status
2026-10-02 08:18:27,855 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:27,883 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build
2026-10-02 08:18:27,885 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:28,061 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:28,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None
2026-10-02 08:18:28,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:29,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:29,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:30,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:30,369 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:30,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:30,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-02 08:18:30,527 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:30,542 [ scc.git] DEBUG Check current status
2026-10-02 08:18:30,542 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:30,575 [ scc.git] DEBUG 1a926b09 Merge pull request #574 from ome/dependabot/npm_and_yarn/minimatch-3.1.5
2026-10-02 08:18:30,578 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:30,741 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:31,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None
2026-10-02 08:18:31,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:32,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:32,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:33,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:33,236 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:33,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:33,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-02 08:18:33,392 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:33,410 [ scc.git] DEBUG Check current status
2026-10-02 08:18:33,410 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:33,445 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0
2026-10-02 08:18:33,447 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:33,604 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:33,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None
2026-10-02 08:18:34,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:35,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:35,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:35,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:35,967 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:36,140 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:36,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-02 08:18:36,141 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:36,160 [ scc.git] DEBUG Check current status
2026-10-02 08:18:36,160 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:36,198 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation
2026-10-02 08:18:36,199 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:36,374 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:36,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None
2026-10-02 08:18:37,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:37,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:38,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:38,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:38,713 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:38,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:38,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-02 08:18:38,833 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:38,853 [ scc.git] DEBUG Check current status
2026-10-02 08:18:38,853 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:38,881 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build
2026-10-02 08:18:38,883 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:39,046 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:39,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None
2026-10-02 08:18:39,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:40,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:40,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:41,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:41,372 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:41,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:41,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-02 08:18:41,486 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:41,499 [ scc.git] DEBUG Check current status
2026-10-02 08:18:41,499 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:41,539 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build
2026-10-02 08:18:41,540 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:41,666 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:41,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None
2026-10-02 08:18:42,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:42,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:43,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:43,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:43,895 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:44,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:44,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-02 08:18:44,015 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:44,030 [ scc.git] DEBUG Check current status
2026-10-02 08:18:44,030 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:44,052 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-10-02 08:18:44,053 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:44,212 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:44,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None
2026-10-02 08:18:45,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:45,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:46,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:46,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:46,545 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:46,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:46,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-02 08:18:46,672 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:46,685 [ scc.git] DEBUG Check current status
2026-10-02 08:18:46,685 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:46,703 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build
2026-10-02 08:18:46,704 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:46,827 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:47,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None
2026-10-02 08:18:47,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:48,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:48,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:49,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:49,087 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:49,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:49,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-02 08:18:49,211 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:49,226 [ scc.git] DEBUG Check current status
2026-10-02 08:18:49,226 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:49,248 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme
2026-10-02 08:18:49,250 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:49,379 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:49,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-02 08:18:49,627 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-02 08:18:49,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None
2026-10-02 08:18:50,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:50,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:51,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:51,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:51,866 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:51,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:51,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-02 08:18:51,981 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:51,996 [ scc.git] DEBUG Check current status
2026-10-02 08:18:51,996 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:52,016 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build
2026-10-02 08:18:52,017 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:52,157 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:52,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None
2026-10-02 08:18:54,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:55,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:55,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:56,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:56,008 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:56,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:56,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-02 08:18:56,183 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:56,206 [ scc.git] DEBUG Check current status
2026-10-02 08:18:56,206 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:56,238 [ scc.git] DEBUG 160d894 Fix display of code
2026-10-02 08:18:56,240 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:56,401 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:56,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None
2026-10-02 08:18:57,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:18:57,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:18:58,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:18:58,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:18:58,703 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:18:58,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:18:58,889 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-02 08:18:58,889 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:18:58,907 [ scc.git] DEBUG Check current status
2026-10-02 08:18:58,907 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:18:58,934 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-10-02 08:18:58,935 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:18:59,103 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:18:59,103 [ scc.git] DEBUG Repository configuration:
base-branch: main
2026-10-02 08:18:59,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None
2026-10-02 08:18:59,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:19:00,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:19:00,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:19:01,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:19:01,349 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:01,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:01,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-02 08:19:01,516 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:19:01,539 [ scc.git] DEBUG Check current status
2026-10-02 08:19:01,539 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:19:01,563 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build
2026-10-02 08:19:01,566 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:19:01,753 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:19:01,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-02 08:19:01,973 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-02 08:19:02,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None
2026-10-02 08:19:02,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:19:03,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:19:03,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:19:04,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:19:04,295 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:04,445 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:04,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-02 08:19:04,446 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:19:04,463 [ scc.git] DEBUG Check current status
2026-10-02 08:19:04,463 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:19:04,487 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build
2026-10-02 08:19:04,488 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:19:04,641 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:19:04,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-02 08:19:04,858 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-02 08:19:05,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None
2026-10-02 08:19:05,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:19:06,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:19:06,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:19:07,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:19:07,143 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:07,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:07,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-02 08:19:07,292 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:19:07,311 [ scc.git] DEBUG Check current status
2026-10-02 08:19:07,311 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:19:07,339 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2026-10-02 08:19:07,341 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:19:07,495 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:19:07,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None
2026-10-02 08:19:08,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:19:08,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:19:09,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:19:09,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:19:09,978 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:10,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:10,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-02 08:19:10,177 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 08:19:10,201 [ scc.git] DEBUG Check current status
2026-10-02 08:19:10,202 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:19:10,232 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0
2026-10-02 08:19:10,233 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:19:10,456 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 08:19:10,456 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2026-10-02 08:19:10,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-02 08:19:10,701 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-02 08:19:10,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None
2026-10-02 08:19:11,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-10-02 08:19:11,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-10-02 08:19:12,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-10-02 08:19:12,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-10-02 08:19:14,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:14,436 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:14,437 [ scc.git] DEBUG Resetting...
2026-10-02 08:19:14,437 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-02 08:19:15,034 [ scc.git] DEBUG HEAD is now at 4ffcbc0 merge master -Dorg -Snone
2026-10-02 08:19:15,036 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-02 08:19:15,629 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f'
2026-10-02 08:19:16,101 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264'
2026-10-02 08:19:16,893 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62'
2026-10-02 08:19:18,327 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-10-02 08:19:19,735 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-10-02 08:19:20,141 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997'
2026-10-02 08:19:20,599 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9'
2026-10-02 08:19:20,877 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73'
2026-10-02 08:19:21,303 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743'
2026-10-02 08:19:21,685 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2026-10-02 08:19:22,493 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-10-02 08:19:22,545 [ scc.git] DEBUG Check current status
2026-10-02 08:19:22,545 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 08:19:22,577 [ scc.git] DEBUG 4ffcbc0 merge master -Dorg -Snone
2026-10-02 08:19:22,578 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 08:19:22,979 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master)
2026-10-02 08:19:23,118 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-10-02 08:19:23,168 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-10-02 08:19:23,232 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-10-02 08:19:23,300 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-10-02 08:19:23,380 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde)
2026-10-02 08:19:23,471 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-10-02 08:19:23,532 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-10-02 08:19:23,632 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee)
2026-10-02 08:19:23,694 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-10-02 08:19:23,775 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-10-02 08:19:23,841 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-10-02 08:19:23,901 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-10-02 08:19:23,960 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-10-02 08:19:24,013 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-10-02 08:19:24,118 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-10-02 08:19:24,189 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-10-02 08:19:24,256 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-10-02 08:19:24,351 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-10-02 08:19:24,445 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-10-02 08:19:24,515 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-10-02 08:19:24,587 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-10-02 08:19:24,639 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755)
2026-10-02 08:19:24,641 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-02 08:19:24,641 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-02 08:19:24,641 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-02 08:19:24,641 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-02 08:19:24,641 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-02 08:19:24,641 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-10-02 08:19:24,641 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:19:24,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-10-02 08:19:25,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-10-02 08:19:25,527 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:19:26,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:26,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:27,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:27,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:19:27,953 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-02 08:19:28,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-10-02 08:19:28,477 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:19:29,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:29,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:30,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:30,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:19:30,654 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-02 08:19:31,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-10-02 08:19:31,204 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:19:31,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:32,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:32,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:33,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:19:33,292 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-02 08:19:33,293 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:19:33,293 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:33,293 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:33,308 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:19:33,337 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:19:33,337 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:19:33,377 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:19:33,463 [ scc.git] DEBUG Already up to date.
2026-10-02 08:19:33,463 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-10-02 08:19:33,934 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:19:33,934 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-10-02 08:19:33,979 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-10-02 08:19:34,481 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:19:34,481 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-10-02 08:19:34,523 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-10-02 08:19:34,971 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-10-02 08:19:34,971 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-10-02 08:19:35,013 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:19:35,013 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:35,013 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:35,030 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-02 08:19:35,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:35,089 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-10-02 08:19:35,169 [ scc.git] DEBUG Already up to date.
2026-10-02 08:19:35,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:19:35,361 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-02 08:19:35,398 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:35,411 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-10-02 08:19:35,483 [ scc.git] DEBUG Already up to date.
2026-10-02 08:19:35,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:19:35,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-02 08:19:35,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:35,839 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-10-02 08:19:35,911 [ scc.git] DEBUG Already up to date.
2026-10-02 08:19:36,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:19:36,217 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:19:37,164 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:37,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:37,184 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:19:37,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None
2026-10-02 08:19:38,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/20 HTTP/1.1" 200 None
2026-10-02 08:19:38,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/20/comments HTTP/1.1" 200 None
2026-10-02 08:19:39,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:39,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:40,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:40,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/f129f75a30e3d732f002677638200861b6cb8ec3?per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:41,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:41,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3/status HTTP/1.1" 200 None
2026-10-02 08:19:41,972 [ scc.repo] DEBUG - PR 20 will-moore 'Hide export dropdown unless omero'
2026-10-02 08:19:42,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None
2026-10-02 08:19:43,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None
2026-10-02 08:19:43,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None
2026-10-02 08:19:44,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None
2026-10-02 08:19:44,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None
2026-10-02 08:19:45,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None
2026-10-02 08:19:45,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:46,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:46,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:47,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc?per_page=1 HTTP/1.1" 200 None
2026-10-02 08:19:47,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:48,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/3779b04e5d2b1ba9994356d36e4d846e6d2b61dc/status HTTP/1.1" 200 None
2026-10-02 08:19:48,296 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-10-02 08:19:48,296 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:19:48,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-02 08:19:48,297 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:48,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:48,313 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:19:48,334 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:19:48,335 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:19:48,371 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:19:48,928 [ scc.git] DEBUG Updating 3935875..f82d7df
2026-10-02 08:19:49,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 None
2026-10-02 08:19:50,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 None
2026-10-02 08:19:51,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None
2026-10-02 08:19:52,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None
2026-10-02 08:19:52,612 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head'
2026-10-02 08:19:53,447 [ scc.git] DEBUG From https://github.com/ome/figure
2026-10-02 08:19:53,447 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD
2026-10-02 08:19:53,485 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2026-10-02 08:19:54,340 [ scc.git] DEBUG From https://github.com/ome/figure
2026-10-02 08:19:54,340 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2026-10-02 08:19:54,372 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:19:54,372 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:54,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:54,388 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3779b04e5d2b1ba9994356d36e4d846e6d2b61dc'
2026-10-02 08:19:54,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:54,500 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) 3779b04e5d2b1ba9994356d36e4d846e6d2b61dc'
2026-10-02 08:19:54,956 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:19:55,053 [ scc.git] DEBUG sample_figures/IDR_JAX_images.json | 5926 ++++++++++++++++++++++++++++++++
2026-10-02 08:19:55,053 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 2759 +++++++++++++++
2026-10-02 08:19:55,053 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +-
2026-10-02 08:19:55,053 [ scc.git] DEBUG 3 files changed, 8687 insertions(+), 2 deletions(-)
2026-10-02 08:19:55,053 [ scc.git] DEBUG create mode 100644 sample_figures/IDR_JAX_images.json
2026-10-02 08:19:55,053 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json
2026-10-02 08:19:55,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:19:55,243 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f129f75a30e3d732f002677638200861b6cb8ec3'
2026-10-02 08:19:55,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:55,406 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Hide export dropdown unless omero) f129f75a30e3d732f002677638200861b6cb8ec3'
2026-10-02 08:19:55,861 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:19:55,972 [ scc.git] DEBUG src/index.html | 6 +++---
2026-10-02 08:19:55,973 [ scc.git] DEBUG src/js/views/figure_view.js | 8 ++++----
2026-10-02 08:19:55,973 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 7 deletions(-)
2026-10-02 08:19:56,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:19:56,181 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:19:56,369 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:56,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:56,387 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:56,540 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:19:56,667 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c16350> has no local changes
2026-10-02 08:19:56,667 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/figure
Excluded PRs:
- PR 12 will-moore 'Browser based export' (stage: draft)
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..f82d7df
Previously merged:
- PR 19 Rdornier 'Fix rectangle crop'
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 20 will-moore 'Hide export dropdown unless omero'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:19:56,855 [ scc.git] DEBUG [detached HEAD f9b8489] merge master -Dorg -Ssuccess-only
2026-10-02 08:19:56,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:56,858 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:19:57,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2
2026-10-02 08:19:57,077 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:19:57,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-02 08:19:57,078 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:57,078 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:57,093 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:19:57,109 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:19:57,109 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:19:57,131 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:19:57,186 [ scc.git] DEBUG Already up to date.
2026-10-02 08:19:57,186 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:19:57,186 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:57,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:57,203 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:19:57,328 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:19:57,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:19:57,343 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:19:57,468 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:19:57,526 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1aea910> has no local changes
2026-10-02 08:19:57,526 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/minimal-omero-client
Already up to date.
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:19:57,661 [ scc.git] DEBUG [detached HEAD 46b6a26] merge master -Dorg -Ssuccess-only
2026-10-02 08:19:57,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:19:57,663 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:19:58,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None
2026-10-02 08:19:58,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None
2026-10-02 08:19:58,600 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:19:59,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-10-02 08:19:59,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:00,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:20:00,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:01,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:20:01,412 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:20:01,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None
2026-10-02 08:20:02,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None
2026-10-02 08:20:02,491 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:20:02,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-02 08:20:02,491 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:02,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:02,520 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:20:02,541 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:20:02,542 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:20:02,577 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:20:02,668 [ scc.git] DEBUG Already up to date.
2026-10-02 08:20:02,668 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head'
2026-10-02 08:20:03,959 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate
2026-10-02 08:20:03,959 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD
2026-10-02 08:20:03,986 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:20:03,987 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:03,987 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:04,002 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-10-02 08:20:04,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:04,037 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-10-02 08:20:04,221 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:20:04,308 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:20:04,308 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:20:04,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:20:04,509 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:20:04,644 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:04,644 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:04,662 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:20:04,811 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:20:04,886 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c3af10> has no local changes
2026-10-02 08:20:04,886 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:20:05,060 [ scc.git] DEBUG [detached HEAD 21abc52] merge master -Dorg -Ssuccess-only
2026-10-02 08:20:05,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:20:05,064 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:20:05,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None
2026-10-02 08:20:05,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None
2026-10-02 08:20:06,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None
2026-10-02 08:20:07,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:07,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:08,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:20:08,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:09,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:20:09,431 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate'
2026-10-02 08:20:09,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None
2026-10-02 08:20:10,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None
2026-10-02 08:20:10,456 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:20:10,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-02 08:20:10,457 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:10,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:10,480 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:20:10,506 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:20:10,506 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:20:10,534 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:20:10,729 [ scc.git] DEBUG Updating ce6e13c..68b7303
2026-10-02 08:20:11,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None
2026-10-02 08:20:12,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None
2026-10-02 08:20:13,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None
2026-10-02 08:20:14,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None
2026-10-02 08:20:14,294 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head'
2026-10-02 08:20:15,127 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render
2026-10-02 08:20:15,127 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD
2026-10-02 08:20:15,163 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:20:15,163 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:15,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:15,211 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-10-02 08:20:15,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:15,312 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-10-02 08:20:15,570 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py
2026-10-02 08:20:15,661 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:20:15,740 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++--------------------
2026-10-02 08:20:15,740 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-)
2026-10-02 08:20:15,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:20:15,937 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:20:16,175 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:16,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:16,202 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:20:16,409 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:20:16,504 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1b48510> has no local changes
2026-10-02 08:20:16,504 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:20:16,713 [ scc.git] DEBUG [detached HEAD 561f6a7] merge master -Dorg -Ssuccess-only
2026-10-02 08:20:16,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:20:16,715 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:20:17,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None
2026-10-02 08:20:17,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None
2026-10-02 08:20:18,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None
2026-10-02 08:20:18,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:19,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:20,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:20:20,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:21,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:21,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:22,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None
2026-10-02 08:20:22,192 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-10-02 08:20:22,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None
2026-10-02 08:20:23,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None
2026-10-02 08:20:23,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:24,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:25,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:20:25,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:26,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:26,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:27,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None
2026-10-02 08:20:27,068 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells'
2026-10-02 08:20:27,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None
2026-10-02 08:20:28,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None
2026-10-02 08:20:28,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None
2026-10-02 08:20:29,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None
2026-10-02 08:20:29,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None
2026-10-02 08:20:29,779 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:20:29,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-02 08:20:29,780 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:29,780 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:29,798 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:20:29,830 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:20:29,830 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:20:29,946 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:20:30,628 [ scc.git] DEBUG Updating 11d3587..d5f88d8
2026-10-02 08:20:31,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None
2026-10-02 08:20:32,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None
2026-10-02 08:20:33,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None
2026-10-02 08:20:34,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None
2026-10-02 08:20:35,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None
2026-10-02 08:20:36,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None
2026-10-02 08:20:37,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None
2026-10-02 08:20:38,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None
2026-10-02 08:20:39,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None
2026-10-02 08:20:40,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None
2026-10-02 08:20:41,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None
2026-10-02 08:20:43,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None
2026-10-02 08:20:44,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None
2026-10-02 08:20:45,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None
2026-10-02 08:20:45,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None
2026-10-02 08:20:47,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None
2026-10-02 08:20:48,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None
2026-10-02 08:20:48,032 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head'
2026-10-02 08:20:49,136 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-10-02 08:20:49,136 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD
2026-10-02 08:20:49,173 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head'
2026-10-02 08:20:49,894 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-10-02 08:20:49,894 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD
2026-10-02 08:20:49,935 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:20:49,935 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:49,935 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:49,955 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-02 08:20:50,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:50,121 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-02 08:20:50,738 [ scc.git] DEBUG Auto-merging README.rst
2026-10-02 08:20:50,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-10-02 08:20:50,739 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-10-02 08:20:50,765 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:20:50,767 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:20:50,820 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-02 08:20:51,057 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-02 08:20:51,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:20:51,269 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-10-02 08:20:51,373 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-02 08:20:51,410 [ scc.git] INFO - PR 174 will-moore 'Skip wells'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- Upstream changes
- test/integration/clitest/test_export.py
- src/omero_zarr/util.py
- src/omero_zarr/raw_pixels.py
- src/omero_zarr/masks.py
- src/omero_zarr/cli.py
--conflicts
2026-10-02 08:20:51,424 [ scc.config] DEBUG Found github.token
2026-10-02 08:20:51,424 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts.
2026-10-02 08:20:51,424 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-02 08:20:51,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:51,546 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-02 08:20:51,950 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-10-02 08:20:51,950 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-10-02 08:20:51,950 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-10-02 08:20:51,951 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-10-02 08:20:51,979 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:20:51,981 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:20:52,021 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-02 08:20:52,203 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0
2026-10-02 08:20:52,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:20:52,389 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-10-02 08:20:52,457 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82'
2026-10-02 08:20:52,489 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- PR #174 will-moore 'Skip wells'
- test/integration/clitest/test_export.py
- src/omero_zarr/masks.py
- Upstream changes
- test/integration/clitest/test_export.py
- src/omero_zarr/masks.py
--conflicts
2026-10-02 08:20:52,501 [ scc.config] DEBUG Found github.token
2026-10-02 08:20:52,501 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts.
2026-10-02 08:20:52,501 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:20:52,652 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:52,652 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:52,667 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:20:52,834 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:20:52,923 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c1dd50> has no local changes
2026-10-02 08:20:52,924 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:20:53,189 [ scc.git] DEBUG [detached HEAD 583e84d] merge master -Dorg -Ssuccess-only
2026-10-02 08:20:53,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:20:53,191 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:20:53,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None
2026-10-02 08:20:54,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None
2026-10-02 08:20:54,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None
2026-10-02 08:20:55,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:55,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:20:56,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:20:57,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None
2026-10-02 08:20:57,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:20:57,509 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration'
2026-10-02 08:20:57,510 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:20:57,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-02 08:20:57,510 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:20:57,510 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:20:57,533 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:20:57,570 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:20:57,570 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:20:57,758 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:20:59,309 [ scc.git] DEBUG Updating 9cc36cde..3195c3df
2026-10-02 08:20:59,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None
2026-10-02 08:21:00,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None
2026-10-02 08:21:01,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None
2026-10-02 08:21:02,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None
2026-10-02 08:21:03,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None
2026-10-02 08:21:04,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None
2026-10-02 08:21:05,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None
2026-10-02 08:21:06,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None
2026-10-02 08:21:06,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None
2026-10-02 08:21:07,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None
2026-10-02 08:21:08,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None
2026-10-02 08:21:09,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None
2026-10-02 08:21:10,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None
2026-10-02 08:21:11,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None
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2026-10-02 08:21:12,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None
2026-10-02 08:21:13,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None
2026-10-02 08:21:14,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None
2026-10-02 08:21:15,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None
2026-10-02 08:21:16,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None
2026-10-02 08:21:17,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None
2026-10-02 08:21:18,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None
2026-10-02 08:21:19,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None
2026-10-02 08:21:20,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None
2026-10-02 08:21:21,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None
2026-10-02 08:21:23,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None
2026-10-02 08:21:23,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None
2026-10-02 08:21:24,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None
2026-10-02 08:21:25,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None
2026-10-02 08:21:26,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None
2026-10-02 08:21:27,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None
2026-10-02 08:21:28,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None
2026-10-02 08:21:29,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None
2026-10-02 08:21:29,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None
2026-10-02 08:21:30,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None
2026-10-02 08:21:31,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None
2026-10-02 08:21:33,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None
2026-10-02 08:21:34,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None
2026-10-02 08:21:36,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None
2026-10-02 08:21:37,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None
2026-10-02 08:21:38,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None
2026-10-02 08:21:39,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None
2026-10-02 08:21:40,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None
2026-10-02 08:21:41,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None
2026-10-02 08:21:42,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None
2026-10-02 08:21:43,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None
2026-10-02 08:21:44,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None
2026-10-02 08:21:45,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None
2026-10-02 08:21:46,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None
2026-10-02 08:21:47,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None
2026-10-02 08:21:48,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None
2026-10-02 08:21:48,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None
2026-10-02 08:21:50,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None
2026-10-02 08:21:50,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None
2026-10-02 08:21:51,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None
2026-10-02 08:21:52,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None
2026-10-02 08:21:53,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None
2026-10-02 08:21:54,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None
2026-10-02 08:21:54,377 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head'
2026-10-02 08:21:54,922 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-10-02 08:21:54,922 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD
2026-10-02 08:21:54,952 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:21:54,953 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:21:54,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:21:54,967 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d5fb705652bca5db75b24fb3e9421f3be09e9fa3'
2026-10-02 08:21:55,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:21:55,082 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) d5fb705652bca5db75b24fb3e9421f3be09e9fa3'
2026-10-02 08:21:55,770 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:21:55,897 [ scc.git] DEBUG .bumpversion.cfg | 4 +-
2026-10-02 08:21:55,897 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 +
2026-10-02 08:21:55,897 [ scc.git] DEBUG .github/workflows/pages.yml | 28 -
2026-10-02 08:21:55,897 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +
2026-10-02 08:21:55,898 [ scc.git] DEBUG .gitignore | 7 +-
2026-10-02 08:21:55,898 [ scc.git] DEBUG .gitmodules | 3 +
2026-10-02 08:21:55,898 [ scc.git] DEBUG .omeroci/app-srv | 4 +-
2026-10-02 08:21:55,898 [ scc.git] DEBUG README.rst | 76 +-
2026-10-02 08:21:55,898 [ scc.git] DEBUG deploy_build.sh | 21 +-
2026-10-02 08:21:55,898 [ scc.git] DEBUG deploy_ghpages.sh | 1 +
2026-10-02 08:21:55,898 [ scc.git] DEBUG figure | 1 +
2026-10-02 08:21:55,898 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0
2026-10-02 08:21:55,898 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 --------------------
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 8441 -> 0 bytes
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 5143 -> 0 bytes
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 568896 -> 0 bytes
2026-10-02 08:21:55,898 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 359272 -> 0 bytes
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2026-10-02 08:21:55,898 [ scc.git] DEBUG omero_figure/views.py | 52 +-
2026-10-02 08:21:55,898 [ scc.git] DEBUG package-lock.json | 1499 --------
2026-10-02 08:21:55,898 [ scc.git] DEBUG package.json | 51 -
2026-10-02 08:21:55,898 [ scc.git] DEBUG setup.py | 8 +
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/images/luts_10.png | Bin 18556 -> 0 bytes
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/images/projection20.png | Bin 3585 -> 0 bytes
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 2477 -> 0 bytes
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/main.js | 189 --
2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 --------
2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 ---------
2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/models/roi_model.js | 149 -
2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/models/undo.js | 282 --
2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 ---
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 ---
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2026-10-02 08:21:55,898 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 -------
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2026-10-02 08:21:55,899 [ scc.git] DEBUG src/js/views/panel_view.js | 501 ---
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2026-10-02 08:21:55,899 [ scc.git] DEBUG src/test.html | 25 -
2026-10-02 08:21:55,899 [ scc.git] DEBUG vite.config.js | 32 -
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2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html
2026-10-02 08:21:55,900 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html
2026-10-02 08:21:55,932 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100644 src/test.html
2026-10-02 08:21:55,933 [ scc.git] DEBUG delete mode 100755 vite.config.js
2026-10-02 08:21:56,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:21:56,154 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:21:56,277 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:21:56,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:21:56,293 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:21:56,429 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:21:56,572 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09c8550> has no local changes
2026-10-02 08:21:56,572 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:21:56,791 [ scc.git] DEBUG [detached HEAD 7feecf2f] merge master -Dorg -Ssuccess-only
2026-10-02 08:21:56,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:21:56,797 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:21:57,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None
2026-10-02 08:21:57,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None
2026-10-02 08:21:57,689 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:21:58,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-10-02 08:21:58,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:21:59,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:22:00,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:00,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:00,496 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:22:01,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None
2026-10-02 08:22:01,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None
2026-10-02 08:22:02,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:02,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:03,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:03,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:03,550 [ scc.repo] DEBUG - PR 18 jburel 'default size z value'
2026-10-02 08:22:03,551 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:22:03,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-02 08:22:03,551 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:03,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:03,575 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:22:03,596 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:22:03,597 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:22:03,620 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:22:03,688 [ scc.git] DEBUG Already up to date.
2026-10-02 08:22:03,688 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head'
2026-10-02 08:22:04,204 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-10-02 08:22:04,204 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD
2026-10-02 08:22:04,235 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head'
2026-10-02 08:22:04,735 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-10-02 08:22:04,735 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD
2026-10-02 08:22:04,759 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:22:04,759 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:04,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:04,783 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-10-02 08:22:04,819 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:04,840 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-10-02 08:22:05,073 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py
2026-10-02 08:22:05,163 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:05,240 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++
2026-10-02 08:22:05,240 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2026-10-02 08:22:05,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:05,713 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-10-02 08:22:05,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:05,777 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-10-02 08:22:06,041 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:06,129 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:22:06,129 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:22:06,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:06,322 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:22:06,516 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:06,517 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:06,534 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:22:06,722 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:22:06,804 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09e1310> has no local changes
2026-10-02 08:22:06,804 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:22:07,015 [ scc.git] DEBUG [detached HEAD 09a31aa] merge master -Dorg -Ssuccess-only
2026-10-02 08:22:07,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:22:07,016 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:22:07,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None
2026-10-02 08:22:07,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None
2026-10-02 08:22:08,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None
2026-10-02 08:22:09,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None
2026-10-02 08:22:09,053 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:09,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:10,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:10,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:11,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:11,324 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-10-02 08:22:11,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None
2026-10-02 08:22:12,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None
2026-10-02 08:22:12,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None
2026-10-02 08:22:12,961 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:13,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:14,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:14,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:15,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:15,277 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-10-02 08:22:15,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None
2026-10-02 08:22:15,779 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:16,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:17,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:17,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:18,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:18,011 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-10-02 08:22:18,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None
2026-10-02 08:22:18,539 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:19,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:19,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:20,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:20,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:20,804 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-10-02 08:22:21,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None
2026-10-02 08:22:21,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None
2026-10-02 08:22:21,803 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:22,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:23,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:23,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:24,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:24,002 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-10-02 08:22:24,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None
2026-10-02 08:22:24,501 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:25,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:25,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:26,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:26,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:26,879 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-10-02 08:22:27,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None
2026-10-02 08:22:27,382 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:22:28,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:28,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:29,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:29,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:29,501 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-10-02 08:22:29,501 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:22:29,501 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-02 08:22:29,502 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:29,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:29,523 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:22:29,546 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:22:29,546 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:22:29,572 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:22:29,636 [ scc.git] DEBUG Already up to date.
2026-10-02 08:22:29,637 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head'
2026-10-02 08:22:31,414 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:31,414 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD
2026-10-02 08:22:31,442 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head'
2026-10-02 08:22:32,143 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:32,143 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD
2026-10-02 08:22:32,170 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head'
2026-10-02 08:22:32,607 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:32,608 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD
2026-10-02 08:22:32,642 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head'
2026-10-02 08:22:33,120 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:33,120 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD
2026-10-02 08:22:33,161 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head'
2026-10-02 08:22:33,717 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:33,717 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD
2026-10-02 08:22:33,744 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head'
2026-10-02 08:22:34,232 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:34,232 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD
2026-10-02 08:22:34,275 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head'
2026-10-02 08:22:34,813 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-10-02 08:22:34,813 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD
2026-10-02 08:22:34,850 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:22:34,850 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:34,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:34,865 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-10-02 08:22:34,902 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:34,928 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-10-02 08:22:35,213 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:35,335 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-10-02 08:22:35,335 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-10-02 08:22:35,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:35,742 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-10-02 08:22:35,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:35,814 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-10-02 08:22:36,041 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:36,186 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:36,280 [ scc.git] DEBUG package-lock.json | 625 +++---------------------------------------------------
2026-10-02 08:22:36,281 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-)
2026-10-02 08:22:36,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:36,466 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-02 08:22:36,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:36,517 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-02 08:22:36,745 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:36,745 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-02 08:22:36,778 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:22:36,780 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:22:36,820 [ scc.git] DEBUG Calling 'git reset --hard a4608cc50d6bd89a5c41f2ab73ee15982d96a1ea'
2026-10-02 08:22:37,041 [ scc.git] DEBUG HEAD is now at a4608cc merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents)
2026-10-02 08:22:37,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:37,246 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-10-02 08:22:37,275 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-02 08:22:37,304 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
--conflicts
2026-10-02 08:22:37,318 [ scc.config] DEBUG Found github.token
2026-10-02 08:22:37,318 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts.
2026-10-02 08:22:37,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-10-02 08:22:37,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:37,365 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-10-02 08:22:37,573 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:37,648 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:37,718 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++-----
2026-10-02 08:22:37,718 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-)
2026-10-02 08:22:37,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:37,910 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-10-02 08:22:37,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:37,972 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-10-02 08:22:38,166 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:38,238 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:22:38,308 [ scc.git] DEBUG package-lock.json | 6 +++---
2026-10-02 08:22:38,308 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-10-02 08:22:38,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:38,540 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-02 08:22:38,592 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:38,613 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-02 08:22:38,903 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:38,903 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-02 08:22:38,932 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:22:38,933 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:22:38,978 [ scc.git] DEBUG Calling 'git reset --hard ad7abbe2d33d86a2a842e6a841e1c33778b1c65a'
2026-10-02 08:22:39,175 [ scc.git] DEBUG HEAD is now at ad7abbe merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-10-02 08:22:39,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:39,366 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-10-02 08:22:39,399 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-02 08:22:39,425 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
--conflicts
2026-10-02 08:22:39,442 [ scc.config] DEBUG Found github.token
2026-10-02 08:22:39,442 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts.
2026-10-02 08:22:39,442 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-02 08:22:39,476 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:39,494 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-02 08:22:39,722 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:22:39,722 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-02 08:22:39,749 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:22:39,750 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:22:39,796 [ scc.git] DEBUG Calling 'git reset --hard ad7abbe2d33d86a2a842e6a841e1c33778b1c65a'
2026-10-02 08:22:39,995 [ scc.git] DEBUG HEAD is now at ad7abbe merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-10-02 08:22:40,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:22:40,181 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-10-02 08:22:40,221 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-10-02 08:22:40,246 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
- PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- package-lock.json
--conflicts
2026-10-02 08:22:40,261 [ scc.config] DEBUG Found github.token
2026-10-02 08:22:40,261 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts.
2026-10-02 08:22:40,262 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:22:40,439 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:40,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:40,459 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:22:40,606 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:22:40,693 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09cf810> has no local changes
2026-10-02 08:22:40,693 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:22:40,937 [ scc.git] DEBUG [detached HEAD a9180a1] merge master -Dorg -Ssuccess-only
2026-10-02 08:22:40,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:22:40,940 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:22:41,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None
2026-10-02 08:22:41,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None
2026-10-02 08:22:42,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None
2026-10-02 08:22:42,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:43,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:44,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:22:44,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:45,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:45,005 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers'
2026-10-02 08:22:45,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None
2026-10-02 08:22:46,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None
2026-10-02 08:22:46,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:47,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:22:47,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-10-02 08:22:48,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:22:48,108 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip'
2026-10-02 08:22:48,109 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:22:48,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-02 08:22:48,109 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:22:48,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:22:48,127 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:22:48,152 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:22:48,152 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:22:48,450 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:22:49,511 [ scc.git] DEBUG Updating 7a798cee..1a926b09
2026-10-02 08:22:50,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 None
2026-10-02 08:22:50,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 None
2026-10-02 08:22:51,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 None
2026-10-02 08:22:52,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 None
2026-10-02 08:22:53,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 None
2026-10-02 08:22:54,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 None
2026-10-02 08:22:55,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 None
2026-10-02 08:22:55,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 None
2026-10-02 08:22:56,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 None
2026-10-02 08:22:57,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 None
2026-10-02 08:22:58,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None
2026-10-02 08:22:59,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None
2026-10-02 08:22:59,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None
2026-10-02 08:23:00,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None
2026-10-02 08:23:01,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None
2026-10-02 08:23:02,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None
2026-10-02 08:23:02,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None
2026-10-02 08:23:03,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None
2026-10-02 08:23:04,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None
2026-10-02 08:23:05,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None
2026-10-02 08:23:06,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None
2026-10-02 08:23:06,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None
2026-10-02 08:23:07,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None
2026-10-02 08:23:08,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None
2026-10-02 08:23:09,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None
2026-10-02 08:23:10,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None
2026-10-02 08:23:10,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None
2026-10-02 08:23:11,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None
2026-10-02 08:23:12,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None
2026-10-02 08:23:13,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None
2026-10-02 08:23:14,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None
2026-10-02 08:23:15,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None
2026-10-02 08:23:15,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None
2026-10-02 08:23:16,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None
2026-10-02 08:23:17,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None
2026-10-02 08:23:18,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None
2026-10-02 08:23:19,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None
2026-10-02 08:23:20,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None
2026-10-02 08:23:21,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None
2026-10-02 08:23:22,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None
2026-10-02 08:23:23,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None
2026-10-02 08:23:23,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None
2026-10-02 08:23:24,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None
2026-10-02 08:23:25,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None
2026-10-02 08:23:26,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None
2026-10-02 08:23:27,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None
2026-10-02 08:23:27,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None
2026-10-02 08:23:28,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None
2026-10-02 08:23:29,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None
2026-10-02 08:23:30,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None
2026-10-02 08:23:31,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None
2026-10-02 08:23:32,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None
2026-10-02 08:23:32,117 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2026-10-02 08:23:32,980 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-02 08:23:32,980 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2026-10-02 08:23:33,018 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head'
2026-10-02 08:23:33,687 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-10-02 08:23:33,687 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD
2026-10-02 08:23:33,727 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:23:33,728 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:23:33,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:33,750 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2026-10-02 08:23:33,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:33,946 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2026-10-02 08:23:34,409 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2026-10-02 08:23:34,508 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:23:34,615 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2026-10-02 08:23:34,615 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2026-10-02 08:23:34,615 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2026-10-02 08:23:34,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:34,813 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-02 08:23:34,945 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:34,962 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging css/app.css
2026-10-02 08:23:35,887 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:23:35,887 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging package.json
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging src/app/context.js
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging src/model/image_config.js
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js
2026-10-02 08:23:35,887 [ scc.git] DEBUG Auto-merging webpack.dev.config.js
2026-10-02 08:23:35,911 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:23:35,914 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:23:36,030 [ scc.git] DEBUG Calling 'git reset --hard 8c2699086f54ff5b85366c6b05c3bcd2d98bc26d'
2026-10-02 08:23:36,483 [ scc.git] DEBUG HEAD is now at 8c269908 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip)
2026-10-02 08:23:36,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:36,672 [ scc.git] DEBUG Calling 'git merge-base 1a926b09a3f7b0de2214893a52e5483d1c11d96b fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-10-02 08:23:36,807 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..1a926b09a3f7b0de2214893a52e5483d1c11d96b'
2026-10-02 08:23:36,861 [ scc.git] INFO - PR 532 will-moore 'Zarr layers'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- Upstream changes
- css/app.css
- package-lock.json
--conflicts
2026-10-02 08:23:36,876 [ scc.config] DEBUG Found github.token
2026-10-02 08:23:36,876 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts.
2026-10-02 08:23:36,876 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:23:37,038 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:23:37,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:37,054 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:23:37,223 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:23:37,430 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09cb3d0> has no local changes
2026-10-02 08:23:37,430 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..1a926b09
Previously merged:
- PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
- PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
- PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
- PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
- PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
- PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:23:37,679 [ scc.git] DEBUG [detached HEAD b8acd1a4] merge master -Dorg -Ssuccess-only
2026-10-02 08:23:37,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:23:37,686 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:23:38,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-10-02 08:23:38,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None
2026-10-02 08:23:39,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None
2026-10-02 08:23:39,165 [ scc.repo] DEBUG # ... Include label: include
2026-10-02 08:23:39,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:40,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:23:40,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:41,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:23:41,274 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys'
2026-10-02 08:23:41,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None
2026-10-02 08:23:42,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None
2026-10-02 08:23:42,278 [ scc.repo] DEBUG # ... Include label: include
2026-10-02 08:23:42,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:43,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:23:43,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:44,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:23:44,353 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-10-02 08:23:44,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-10-02 08:23:45,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-10-02 08:23:45,337 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:23:45,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:46,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:23:47,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:23:47,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:48,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:23:48,426 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:23:48,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-10-02 08:23:49,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:50,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:23:50,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-10-02 08:23:50,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:23:50,993 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:23:51,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-10-02 08:23:52,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-10-02 08:23:52,027 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:23:52,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-02 08:23:52,028 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:23:52,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:52,047 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:23:52,070 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:23:52,070 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:23:52,096 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:23:52,167 [ scc.git] DEBUG Already up to date.
2026-10-02 08:23:52,167 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-10-02 08:23:52,688 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-02 08:23:52,688 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-10-02 08:23:52,722 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-10-02 08:23:53,274 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-02 08:23:53,274 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-10-02 08:23:53,302 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head'
2026-10-02 08:23:54,238 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-02 08:23:54,238 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD
2026-10-02 08:23:54,265 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head'
2026-10-02 08:23:54,766 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-10-02 08:23:54,766 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD
2026-10-02 08:23:54,794 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:23:54,794 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:23:54,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:54,815 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-10-02 08:23:54,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:54,894 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-10-02 08:23:55,124 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:23:55,202 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:23:55,202 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:23:55,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:55,409 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-02 08:23:55,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:55,472 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-02 08:23:55,757 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-10-02 08:23:55,757 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-10-02 08:23:55,798 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:23:55,802 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:23:55,847 [ scc.git] DEBUG Calling 'git reset --hard 397221b51d4f5ff467a0500a588a9431c64d2870'
2026-10-02 08:23:56,069 [ scc.git] DEBUG HEAD is now at 397221b merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-10-02 08:23:56,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:56,258 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-10-02 08:23:56,296 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-10-02 08:23:56,328 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-10-02 08:23:56,358 [ scc.config] DEBUG Found github.token
2026-10-02 08:23:56,358 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-10-02 08:23:56,358 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28'
2026-10-02 08:23:56,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:56,440 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28'
2026-10-02 08:23:56,760 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:23:56,878 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++-
2026-10-02 08:23:56,878 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-)
2026-10-02 08:23:57,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:57,078 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783'
2026-10-02 08:23:57,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:57,204 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783'
2026-10-02 08:23:57,592 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-10-02 08:23:57,718 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:23:57,856 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++---
2026-10-02 08:23:57,856 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-)
2026-10-02 08:23:58,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:23:58,049 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:23:58,281 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:23:58,281 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:23:58,305 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:23:58,536 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:23:58,651 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09cb450> has no local changes
2026-10-02 08:23:58,651 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:23:58,825 [ scc.git] DEBUG [detached HEAD 0424f0a] merge master -Dorg -Ssuccess-only
2026-10-02 08:23:58,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:23:58,828 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:23:59,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-10-02 08:23:59,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-10-02 08:24:00,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-10-02 08:24:00,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:01,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:01,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:02,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:02,467 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-10-02 08:24:02,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-10-02 08:24:03,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-10-02 08:24:04,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:04,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:05,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:05,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:05,730 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-10-02 08:24:05,730 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:05,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-02 08:24:05,731 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:05,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:05,767 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:05,807 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:05,807 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:05,888 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:06,362 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-10-02 08:24:07,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-10-02 08:24:07,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-10-02 08:24:08,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-10-02 08:24:08,683 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-10-02 08:24:09,483 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-10-02 08:24:09,483 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-10-02 08:24:09,510 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-10-02 08:24:10,019 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-10-02 08:24:10,019 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-10-02 08:24:10,054 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:10,054 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:10,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:10,072 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-02 08:24:10,157 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:10,172 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-02 08:24:10,495 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-10-02 08:24:10,495 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-10-02 08:24:10,495 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-10-02 08:24:10,516 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:24:10,517 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:24:10,567 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-10-02 08:24:10,765 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-10-02 08:24:10,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:10,950 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-10-02 08:24:11,033 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-10-02 08:24:11,077 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-10-02 08:24:11,095 [ scc.config] DEBUG Found github.token
2026-10-02 08:24:11,095 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-10-02 08:24:11,096 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-10-02 08:24:11,161 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:11,182 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-10-02 08:24:11,509 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:11,601 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-10-02 08:24:11,602 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-10-02 08:24:11,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:11,776 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:11,912 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:11,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:11,927 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:12,048 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:12,111 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e09ba4d0> has no local changes
2026-10-02 08:24:12,111 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:12,246 [ scc.git] DEBUG [detached HEAD e46d675] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:12,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:12,248 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:13,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-10-02 08:24:13,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-10-02 08:24:14,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:14,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:15,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:15,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:15,980 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:24:16,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-10-02 08:24:16,495 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:24:17,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:17,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:18,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:18,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:18,664 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-10-02 08:24:19,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-10-02 08:24:19,150 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:24:19,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:20,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:20,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:21,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:21,357 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-10-02 08:24:21,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-10-02 08:24:22,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-10-02 08:24:22,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-10-02 08:24:23,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-10-02 08:24:23,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-10-02 08:24:24,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-10-02 08:24:24,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-10-02 08:24:24,874 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:24,874 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-02 08:24:24,875 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:24,875 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:24,904 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:24,936 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:24,936 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:24,965 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:25,038 [ scc.git] DEBUG Already up to date.
2026-10-02 08:24:25,039 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-10-02 08:24:25,523 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-02 08:24:25,523 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-10-02 08:24:25,549 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-10-02 08:24:25,971 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-02 08:24:25,971 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-10-02 08:24:26,003 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-10-02 08:24:26,522 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-10-02 08:24:26,522 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-10-02 08:24:26,558 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:26,558 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:26,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:26,587 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-10-02 08:24:26,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:26,636 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-10-02 08:24:26,858 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:26,918 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-10-02 08:24:26,918 [ scc.git] DEBUG package.json | 2 +-
2026-10-02 08:24:26,918 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-10-02 08:24:27,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:27,110 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-10-02 08:24:27,137 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:27,150 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-10-02 08:24:27,322 [ scc.git] DEBUG Auto-merging package-lock.json
2026-10-02 08:24:27,322 [ scc.git] DEBUG Auto-merging package.json
2026-10-02 08:24:27,390 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:27,450 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-10-02 08:24:27,450 [ scc.git] DEBUG package.json | 2 +-
2026-10-02 08:24:27,450 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-10-02 08:24:27,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:27,647 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-10-02 08:24:27,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:27,731 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-10-02 08:24:28,023 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:28,114 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:24:28,115 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:24:28,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:28,290 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:28,503 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:28,503 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:28,532 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:28,687 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:28,772 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c24350> has no local changes
2026-10-02 08:24:28,772 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:28,963 [ scc.git] DEBUG [detached HEAD 9b45fcb] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:28,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:28,965 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:29,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-10-02 08:24:29,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-10-02 08:24:29,736 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:24:30,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:30,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:31,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:24:32,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:32,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:32,548 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:24:32,548 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:32,548 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-02 08:24:32,548 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:32,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:32,572 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:32,591 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:32,591 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:32,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:32,671 [ scc.git] DEBUG Already up to date.
2026-10-02 08:24:32,671 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-10-02 08:24:33,144 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-10-02 08:24:33,144 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-10-02 08:24:33,170 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:33,170 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:33,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:33,194 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-10-02 08:24:33,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:33,245 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-10-02 08:24:33,519 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:33,610 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:24:33,610 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:24:33,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:33,796 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:34,053 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:34,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:34,073 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:34,280 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:34,377 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c39890> has no local changes
2026-10-02 08:24:34,377 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:34,592 [ scc.git] DEBUG [detached HEAD 0987a0e] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:34,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:34,595 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:34,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-10-02 08:24:35,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-10-02 08:24:35,466 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:35,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-02 08:24:35,467 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:35,467 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:35,500 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:35,540 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:35,541 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:35,616 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:35,935 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-10-02 08:24:36,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-10-02 08:24:37,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-10-02 08:24:37,731 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:37,731 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:37,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:37,753 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:37,884 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:37,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:37,899 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:38,020 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:38,089 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c3ae50> has no local changes
2026-10-02 08:24:38,089 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:38,255 [ scc.git] DEBUG [detached HEAD bdde4c1] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:38,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:38,257 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:38,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-10-02 08:24:39,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-10-02 08:24:39,244 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:24:39,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:40,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:41,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:24:41,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:42,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:42,150 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:24:42,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-10-02 08:24:43,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-10-02 08:24:43,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:44,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:44,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:45,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:45,203 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-10-02 08:24:45,204 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:45,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-02 08:24:45,204 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:45,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:45,228 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:45,253 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:45,253 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:45,283 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:45,341 [ scc.git] DEBUG Already up to date.
2026-10-02 08:24:45,341 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-10-02 08:24:45,883 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-10-02 08:24:45,883 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-10-02 08:24:45,909 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-10-02 08:24:46,311 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-10-02 08:24:46,311 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-10-02 08:24:46,338 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:46,339 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:46,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:46,355 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-02 08:24:46,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:46,411 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-02 08:24:46,698 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG Auto-merging setup.py
2026-10-02 08:24:46,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-10-02 08:24:46,721 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:24:46,722 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:24:46,789 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-10-02 08:24:47,001 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-10-02 08:24:47,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:47,190 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-10-02 08:24:47,229 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-10-02 08:24:47,261 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
--conflicts
2026-10-02 08:24:47,276 [ scc.config] DEBUG Found github.token
2026-10-02 08:24:47,276 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-10-02 08:24:47,276 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-10-02 08:24:47,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:47,327 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-10-02 08:24:47,598 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:47,683 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:24:47,683 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:24:47,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:47,864 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:48,005 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:48,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:48,024 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:48,153 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:48,220 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0a5db90> has no local changes
2026-10-02 08:24:48,220 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:48,388 [ scc.git] DEBUG [detached HEAD 2d0d4fd] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:48,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:48,390 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:48,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-10-02 08:24:49,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-10-02 08:24:49,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-10-02 08:24:50,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-10-02 08:24:51,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:51,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:24:52,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:52,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:24:52,551 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-10-02 08:24:52,551 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:24:52,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-02 08:24:52,552 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:52,552 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:52,573 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:24:52,599 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:24:52,599 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:24:52,655 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:24:52,950 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-10-02 08:24:53,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-10-02 08:24:54,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-10-02 08:24:55,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-10-02 08:24:55,583 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-10-02 08:24:56,148 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-10-02 08:24:56,148 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-10-02 08:24:56,179 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:24:56,179 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:56,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:56,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-10-02 08:24:56,240 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:56,260 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-10-02 08:24:56,504 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-10-02 08:24:56,637 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:24:56,732 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-10-02 08:24:56,732 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-10-02 08:24:56,732 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-10-02 08:24:56,732 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-10-02 08:24:56,732 [ scc.git] DEBUG ms/test | 2 ++
2026-10-02 08:24:56,732 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-10-02 08:24:56,732 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-10-02 08:24:56,732 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-10-02 08:24:56,732 [ scc.git] DEBUG create mode 100755 ms/test
2026-10-02 08:24:56,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:24:56,912 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:24:57,120 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:24:57,120 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:24:57,150 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:24:57,334 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:24:57,467 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1c3a150> has no local changes
2026-10-02 08:24:57,467 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:24:57,685 [ scc.git] DEBUG [detached HEAD 67b1a2a] merge master -Dorg -Ssuccess-only
2026-10-02 08:24:57,690 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:24:57,690 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:24:57,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-10-02 08:24:58,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-10-02 08:24:58,489 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:24:59,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-10-02 08:24:59,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:00,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:00,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:01,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:01,211 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:25:01,211 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:01,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-02 08:25:01,211 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:01,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:01,237 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:25:01,266 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:01,266 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:25:01,297 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:25:01,375 [ scc.git] DEBUG Already up to date.
2026-10-02 08:25:01,375 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-10-02 08:25:01,848 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-10-02 08:25:01,848 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-10-02 08:25:01,887 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:01,887 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:01,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:01,915 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-10-02 08:25:01,945 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:01,965 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-10-02 08:25:02,212 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:02,301 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:25:02,301 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:25:02,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:02,499 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:02,693 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:02,693 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:02,710 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:02,850 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:02,915 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0a71010> has no local changes
2026-10-02 08:25:02,915 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:03,056 [ scc.git] DEBUG [detached HEAD be92c96] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:03,058 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:03,058 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:03,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-10-02 08:25:03,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-10-02 08:25:03,872 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:25:04,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:05,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:05,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:06,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:06,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:06,629 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:25:06,629 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:06,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-02 08:25:06,629 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:06,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:06,669 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:25:06,689 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:06,690 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:25:06,735 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:25:06,954 [ scc.git] DEBUG Updating deab817..160d894
2026-10-02 08:25:07,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-10-02 08:25:07,695 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-10-02 08:25:08,182 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-10-02 08:25:08,182 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-10-02 08:25:08,223 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:08,223 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:08,223 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:08,241 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-10-02 08:25:08,274 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:08,300 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-10-02 08:25:08,508 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:08,592 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:25:08,592 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:25:08,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:08,785 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:08,924 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:08,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:08,938 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:09,062 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:09,120 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0a56710> has no local changes
2026-10-02 08:25:09,120 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:09,312 [ scc.git] DEBUG [detached HEAD 50258ef] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:09,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:09,315 [ scc.git] INFO Overriding base-branch from master to main
2026-10-02 08:25:09,315 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:09,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-10-02 08:25:10,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-10-02 08:25:10,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-10-02 08:25:11,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:11,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:12,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:12,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:13,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:13,431 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-10-02 08:25:13,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-10-02 08:25:14,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-10-02 08:25:15,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-10-02 08:25:16,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:17,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:17,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:18,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:18,004 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-10-02 08:25:18,004 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:18,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-02 08:25:18,005 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:18,005 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:18,028 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-10-02 08:25:18,054 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:18,054 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-10-02 08:25:18,102 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-10-02 08:25:18,277 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-10-02 08:25:18,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-10-02 08:25:19,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-10-02 08:25:19,881 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-10-02 08:25:20,465 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-10-02 08:25:20,465 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-10-02 08:25:20,490 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-10-02 08:25:21,237 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-10-02 08:25:21,237 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-10-02 08:25:21,260 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:21,260 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:21,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:21,274 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-02 08:25:21,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:21,319 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-02 08:25:21,541 [ scc.git] DEBUG Auto-merging README.rst
2026-10-02 08:25:21,542 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-10-02 08:25:21,542 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-10-02 08:25:21,542 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-10-02 08:25:21,563 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 08:25:21,564 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 08:25:21,600 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-10-02 08:25:21,734 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-10-02 08:25:21,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:21,972 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-10-02 08:25:21,999 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-10-02 08:25:22,021 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#97](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-10-02 08:25:22,035 [ scc.config] DEBUG Found github.token
2026-10-02 08:25:22,036 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-10-02 08:25:22,036 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-10-02 08:25:22,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:22,132 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-10-02 08:25:22,401 [ scc.git] DEBUG Auto-merging README.rst
2026-10-02 08:25:22,401 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-10-02 08:25:22,472 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:22,593 [ scc.git] DEBUG README.rst | 3 +
2026-10-02 08:25:22,593 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-10-02 08:25:22,593 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-10-02 08:25:22,593 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-10-02 08:25:22,593 [ scc.git] DEBUG setup.py | 5 +-
2026-10-02 08:25:22,593 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-10-02 08:25:22,593 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-10-02 08:25:22,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:22,787 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:23,011 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:23,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:23,030 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:23,221 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:23,324 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0a59a90> has no local changes
2026-10-02 08:25:23,324 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:23,596 [ scc.git] DEBUG [detached HEAD 47c79f1] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:23,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:23,598 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:23,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-10-02 08:25:24,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-10-02 08:25:24,434 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:25:24,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:25,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:26,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:26,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:27,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:27,236 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:25:27,236 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:27,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-02 08:25:27,237 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:27,237 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:27,265 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:25:27,296 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:27,296 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:25:27,343 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:25:27,434 [ scc.git] DEBUG Already up to date.
2026-10-02 08:25:27,434 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-10-02 08:25:27,949 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-10-02 08:25:27,949 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-10-02 08:25:27,976 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:27,976 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:27,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:28,001 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-10-02 08:25:28,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:28,044 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-10-02 08:25:28,236 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:28,316 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:25:28,316 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:25:28,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:28,509 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:28,648 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:28,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:28,665 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:28,792 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:28,871 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e007a050> has no local changes
2026-10-02 08:25:28,871 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:29,054 [ scc.git] DEBUG [detached HEAD 2f1675c] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:29,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:29,058 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:29,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-10-02 08:25:29,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-10-02 08:25:29,868 [ scc.repo] DEBUG # ... Include label: dependencies
2026-10-02 08:25:30,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:31,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:31,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:32,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:32,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:32,725 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:25:32,725 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:32,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-02 08:25:32,725 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:32,726 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:32,753 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:25:32,786 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:32,786 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:25:32,813 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:25:32,900 [ scc.git] DEBUG Already up to date.
2026-10-02 08:25:32,900 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-10-02 08:25:33,370 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-10-02 08:25:33,370 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-10-02 08:25:33,396 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:33,396 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:33,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:33,413 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-10-02 08:25:33,436 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:33,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-10-02 08:25:33,688 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:33,769 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-10-02 08:25:33,769 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-10-02 08:25:33,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:33,961 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:34,107 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:34,107 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:34,122 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:34,252 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:34,320 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e1be39d0> has no local changes
2026-10-02 08:25:34,320 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:34,470 [ scc.git] DEBUG [detached HEAD ac5567c] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:34,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:34,472 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:34,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-10-02 08:25:34,896 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:34,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-02 08:25:34,896 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:34,896 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:34,923 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 08:25:34,945 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:34,946 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 08:25:34,968 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 08:25:35,048 [ scc.git] DEBUG Already up to date.
2026-10-02 08:25:35,048 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:35,048 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:35,048 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:35,068 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:35,213 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:35,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:35,241 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:35,429 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:35,559 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0068b90> has no local changes
2026-10-02 08:25:35,559 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:35,725 [ scc.git] DEBUG [detached HEAD 9e9ff1d] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:35,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:35,728 [ scc.git] INFO Overriding base-branch from master to develop
2026-10-02 08:25:35,728 [ scc.repo] DEBUG ## PRs found:
2026-10-02 08:25:36,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-10-02 08:25:36,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-10-02 08:25:37,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:37,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 08:25:38,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 08:25:38,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-10-02 08:25:39,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-10-02 08:25:39,251 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-10-02 08:25:39,251 [ scc.repo] DEBUG ## Branches found:
2026-10-02 08:25:39,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-02 08:25:39,252 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:39,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:39,287 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-10-02 08:25:39,325 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 08:25:39,325 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-10-02 08:25:39,466 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-10-02 08:25:39,851 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-10-02 08:25:40,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-10-02 08:25:41,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-10-02 08:25:42,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-10-02 08:25:43,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-10-02 08:25:43,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-10-02 08:25:44,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-10-02 08:25:45,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-10-02 08:25:45,618 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-10-02 08:25:46,219 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-10-02 08:25:46,219 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-10-02 08:25:46,274 [ scc.git] DEBUG ## Unique users: []
2026-10-02 08:25:46,274 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:46,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:46,296 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-10-02 08:25:46,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:46,381 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-10-02 08:25:46,654 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-02 08:25:46,732 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-10-02 08:25:46,732 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-10-02 08:25:46,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:46,962 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 08:25:47,212 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 08:25:47,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 08:25:47,239 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:47,422 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:25:47,501 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e0063910> has no local changes
2026-10-02 08:25:47,501 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:25:47,724 [ scc.git] DEBUG [detached HEAD f0fe73b] merge master -Dorg -Ssuccess-only
2026-10-02 08:25:47,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:25:47,728 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 08:25:47,998 [ scc.config] DEBUG Found submodule.figure.url
2026-10-02 08:25:48,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:48,218 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-10-02 08:25:48,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:48,653 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-10-02 08:25:48,660 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-10-02 08:25:49,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:49,083 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-10-02 08:25:49,092 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-10-02 08:25:49,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:49,600 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-10-02 08:25:49,613 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-10-02 08:25:49,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:50,025 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-10-02 08:25:50,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:50,451 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-10-02 08:25:50,460 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-10-02 08:25:50,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:50,899 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-10-02 08:25:50,908 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-10-02 08:25:51,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:51,346 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-10-02 08:25:51,356 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-10-02 08:25:51,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:51,788 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-10-02 08:25:51,802 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-10-02 08:25:52,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:52,202 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-10-02 08:25:52,214 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-10-02 08:25:52,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:52,628 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-10-02 08:25:52,639 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-10-02 08:25:53,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:53,057 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-10-02 08:25:53,069 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-10-02 08:25:53,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:53,511 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-10-02 08:25:53,524 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-10-02 08:25:53,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:53,950 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-10-02 08:25:54,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:54,376 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-10-02 08:25:54,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:54,805 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-10-02 08:25:54,815 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-10-02 08:25:55,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:55,228 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-10-02 08:25:55,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:55,662 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-10-02 08:25:56,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:56,092 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-10-02 08:25:56,101 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-10-02 08:25:56,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:56,558 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-10-02 08:25:56,567 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-10-02 08:25:56,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:56,990 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-10-02 08:25:57,003 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-10-02 08:25:57,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:57,423 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-10-02 08:25:57,431 [ scc.config] DEBUG Found submodule.scripts.url
2026-10-02 08:25:57,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 08:25:57,899 [ scc.config] DEBUG Found submodule.scripts.branch
2026-10-02 08:25:57,900 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 08:26:01,001 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc2e2b85610> has local changes
2026-10-02 08:26:01,001 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/figure
Excluded PRs:
- PR 12 will-moore 'Browser based export' (stage: draft)
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..f82d7df
Previously merged:
- PR 19 Rdornier 'Fix rectangle crop'
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 20 will-moore 'Hide export dropdown unless omero'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..1a926b09
Previously merged:
- PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
- PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
- PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
- PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
- PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
- PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#97 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/97/)'
2026-10-02 08:26:01,843 [ scc.git] DEBUG [detached HEAD fbe2d17] merge master -Dorg -Ssuccess-only
2026-10-02 08:26:01,843 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-)
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/omero-plugins
2026-10-02 08:26:01,845 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/figure
2026-10-02 08:26:01,845 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (stage: draft)
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft)
2026-10-02 08:26:01,845 [ scc.merge] INFO Updating 3935875..f82d7df
2026-10-02 08:26:01,845 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-10-02 08:26:01,845 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-10-02 08:26:01,845 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-10-02 08:26:01,845 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-10-02 08:26:01,845 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-10-02 08:26:01,845 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-10-02 08:26:01,845 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,845 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-10-02 08:26:01,845 [ scc.merge] INFO
2026-10-02 08:26:01,845 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-10-02 08:26:01,845 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-10-02 08:26:01,846 [ scc.merge] INFO Updating 11d3587..d5f88d8
2026-10-02 08:26:01,846 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,846 [ scc.merge] INFO
2026-10-02 08:26:01,846 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-10-02 08:26:01,846 [ scc.merge] INFO
2026-10-02 08:26:01,846 [ scc.merge] INFO Repository: ome/omero-figure
2026-10-02 08:26:01,846 [ scc.merge] INFO Updating 9cc36cde..3195c3df
2026-10-02 08:26:01,846 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-10-02 08:26:01,846 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration'
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-10-02 08:26:01,847 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Repository: ome/omero-gallery
2026-10-02 08:26:01,847 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-10-02 08:26:01,847 [ scc.merge] INFO
2026-10-02 08:26:01,847 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-10-02 08:26:01,847 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-10-02 08:26:01,847 [ scc.merge] INFO Updating 7a798cee..1a926b09
2026-10-02 08:26:01,847 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-10-02 08:26:01,847 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Repository: ome/omero-mapr
2026-10-02 08:26:01,848 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-10-02 08:26:01,848 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys'
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,848 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,848 [ scc.merge] INFO
2026-10-02 08:26:01,848 [ scc.merge] INFO Repository: ome/omero-metadata
2026-10-02 08:26:01,848 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-10-02 08:26:01,848 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-parade
2026-10-02 08:26:01,849 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-10-02 08:26:01,849 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-10-02 08:26:01,849 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-rois
2026-10-02 08:26:01,849 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-10-02 08:26:01,849 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-10-02 08:26:01,849 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-signup
2026-10-02 08:26:01,849 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-10-02 08:26:01,849 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-10-02 08:26:01,849 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-10-02 08:26:01,849 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-upload
2026-10-02 08:26:01,849 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,849 [ scc.merge] INFO
2026-10-02 08:26:01,849 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-10-02 08:26:01,849 [ scc.merge] INFO Updating deab817..160d894
2026-10-02 08:26:01,849 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,849 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-10-02 08:26:01,850 [ scc.merge] INFO Excluded PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-10-02 08:26:01,850 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-10-02 08:26:01,850 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-10-02 08:26:01,850 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-10-02 08:26:01,850 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-10-02 08:26:01,850 [ scc.merge] INFO Already up to date.
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Repository: ome/scripts
2026-10-02 08:26:01,850 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-10-02 08:26:01,850 [ scc.merge] INFO Previously merged:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] INFO Merged PRs:
2026-10-02 08:26:01,850 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-10-02 08:26:01,850 [ scc.merge] INFO
2026-10-02 08:26:01,850 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-02 08:26:01,850 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-10-02 08:26:01,881 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:01,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-10-02 08:26:01,896 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:01,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-10-02 08:26:01,910 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:01,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-10-02 08:26:01,925 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:01,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-10-02 08:26:01,940 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:01,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:01,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-10-02 08:26:01,985 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-10-02 08:26:02,001 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-10-02 08:26:02,017 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-10-02 08:26:02,034 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-10-02 08:26:02,049 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-10-02 08:26:02,066 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-10-02 08:26:02,082 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,098 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-10-02 08:26:02,098 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-10-02 08:26:02,114 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-10-02 08:26:02,128 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-10-02 08:26:02,152 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-10-02 08:26:02,169 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-10-02 08:26:02,190 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-10-02 08:26:02,206 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-10-02 08:26:02,221 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-10-02 08:26:02,236 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-10-02 08:26:02,250 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-10-02 08:26:02,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-10-02 08:26:02,264 [ scc.git] DEBUG Calling 'git remote'
2026-10-02 08:26:02,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
grep: build.gradle: No such file or directory
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Commit all component version changes
Entering 'figure'
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'figure'
HEAD detached from 3935875
nothing to commit, working tree clean
Entering 'minimal-omero-client'
[detached HEAD caa83dc] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
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Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
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nothing to commit, working tree clean
Entering 'omero-fpbioimage'
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Entering 'omero-gallery'
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Entering 'omero-iviewer'
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Entering 'omero-mapr'
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Entering 'omero-metadata'
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Entering 'omero-parade'
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Entering 'omero-prometheus-tools'
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Entering 'omero-rois'
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Entering 'omero-signup'
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Entering 'omero-test-infra'
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Entering 'omero-virtual-microscope'
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Entering 'omero-webtest'
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Entering 'rOMERO-gateway'
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Entering 'scripts'
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[detached HEAD 6a05928] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-10-02 08:27:31,042 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-10-02 08:27:42,676 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-10-02 08:27:45,467 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-02 08:27:50,971 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-10-02 08:28:55,481 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS