12:14:22 Started by upstream project "Trigger" build number 5 12:14:22 originally caused by: 12:14:22 Started by user devspace 12:14:22 Running as SYSTEM 12:14:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 12:14:22 The recommended git tool is: NONE 12:14:22 No credentials specified 12:14:22 Cloning the remote Git repository 12:14:22 Cloning repository https://github.com/ome/openmicroscopy.git 12:14:22 > git init /home/omero/workspace/OMERO-push/src # timeout=10 12:14:22 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 12:14:22 > git --version # timeout=10 12:14:22 > git --version # 'git version 2.52.0' 12:14:22 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 12:16:18 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 12:16:18 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 12:16:18 Avoid second fetch 12:16:18 > git rev-parse origin/develop^{commit} # timeout=10 12:16:18 Checking out Revision 459295bae8a1813dc9fb30a674107a799113dc49 (origin/develop) 12:16:18 > git config core.sparsecheckout # timeout=10 12:16:18 > git checkout -f 459295bae8a1813dc9fb30a674107a799113dc49 # timeout=30 12:16:28 Commit message: "Merge pull request #6456 from knabar/update-tree-tag-child-count" 12:16:28 First time build. Skipping changelog. 12:16:28 Cleaning workspace 12:16:28 > git rev-parse --verify HEAD # timeout=10 12:16:28 Resetting working tree 12:16:28 > git reset --hard # timeout=10 12:16:28 > git clean -fdx # timeout=10 12:16:28 Copied 1 artifact from "OMERO-python-superbuild-build" build number 1 12:16:28 [OMERO-push] $ /bin/bash -xe /tmp/jenkins11208717215552424884.sh 12:16:28 + python3.11 -mvenv venv 12:16:48 + source /home/omero/workspace/OMERO-push/venv/bin/activate 12:16:48 ++ deactivate nondestructive 12:16:48 ++ '[' -n '' ']' 12:16:48 ++ '[' -n '' ']' 12:16:48 ++ hash -r 12:16:48 ++ '[' -n '' ']' 12:16:48 ++ unset VIRTUAL_ENV 12:16:48 ++ unset VIRTUAL_ENV_PROMPT 12:16:48 ++ '[' '!' nondestructive = nondestructive ']' 12:16:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 12:16:48 ++ export VIRTUAL_ENV 12:16:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:16:48 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:16:48 ++ export PATH 12:16:48 ++ '[' -n '' ']' 12:16:48 ++ '[' -z '' ']' 12:16:48 ++ _OLD_VIRTUAL_PS1= 12:16:48 ++ PS1='(venv) ' 12:16:48 ++ export PS1 12:16:48 ++ VIRTUAL_ENV_PROMPT='(venv) ' 12:16:48 ++ export VIRTUAL_ENV_PROMPT 12:16:48 ++ hash -r 12:16:48 + pip install -U pip 12:16:49 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1) 12:16:50 Collecting pip 12:16:50 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB) 12:16:50 Installing collected packages: pip 12:16:50 Attempting uninstall: pip 12:16:50 Found existing installation: pip 22.3.1 12:16:51 Uninstalling pip-22.3.1: 12:16:51 Successfully uninstalled pip-22.3.1 12:17:07 Successfully installed pip-26.1.2 12:17:08 + pip install -U scc 12:17:09 Collecting scc 12:17:09 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) 12:17:09 Collecting PyGithub>=1.54 (from scc) 12:17:09 Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB) 12:17:09 Collecting PyYAML>=5.1 (from scc) 12:17:09 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 12:17:09 Collecting future (from scc) 12:17:09 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 12:17:09 Collecting ruamel.yaml (from scc) 12:17:09 Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) 12:17:09 Collecting ruamel.yaml.jinja2 (from scc) 12:17:09 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) 12:17:09 Collecting six (from scc) 12:17:09 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 12:17:09 Collecting urllib3<2 (from scc) 12:17:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 12:17:10 Collecting yaclifw<0.3,>=0.2.0 (from scc) 12:17:10 Using cached yaclifw-0.2.0-py3-none-any.whl 12:17:10 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) 12:17:10 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) 12:17:10 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) 12:17:10 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 12:17:10 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 12:17:10 Using cached pyjwt-2.13.0-py3-none-any.whl.metadata (3.4 kB) 12:17:10 Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) 12:17:10 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 12:17:10 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 12:17:10 Using cached cryptography-49.0.0-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB) 12:17:10 Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 12:17:10 Using cached cffi-2.1.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) 12:17:10 Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 12:17:10 Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) 12:17:10 Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) 12:17:10 Using cached charset_normalizer-3.4.8-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) 12:17:10 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) 12:17:10 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 12:17:10 Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) 12:17:10 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB) 12:17:10 Using cached scc-0.20.0-py3-none-any.whl (48 kB) 12:17:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 12:17:10 Using cached pygithub-2.9.1-py3-none-any.whl (449 kB) 12:17:10 Using cached pyjwt-2.13.0-py3-none-any.whl (31 kB) 12:17:10 Using cached cryptography-49.0.0-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB) 12:17:10 Using cached cffi-2.1.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) 12:17:10 Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) 12:17:10 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 12:17:11 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 12:17:11 Using cached charset_normalizer-3.4.8-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 12:17:11 Using cached idna-3.18-py3-none-any.whl (65 kB) 12:17:11 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 12:17:11 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 12:17:11 Using cached future-1.0.0-py3-none-any.whl (491 kB) 12:17:11 Using cached pycparser-3.0-py3-none-any.whl (48 kB) 12:17:11 Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) 12:17:11 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 12:17:11 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 12:17:11 Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc 12:17:30 12:17:30 Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.6.17 cffi-2.1.0 charset_normalizer-3.4.8 cryptography-49.0.0 future-1.0.0 idna-3.18 pycparser-3.0 pyjwt-2.13.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 12:17:30 + test -e src 12:17:30 + cd src 12:17:30 ++ git config github.user 12:17:30 + user=snoopycrimecop 12:17:30 + scc merge develop --no-ask --reset --shallow -S success-only 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Merging Pull Request(s) based on develop 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 12:17:35 2026-07-07 12:17:35,881 [ scc.merge] INFO Excluding Pull Request(s) without successful status 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO Repository: ome/openmicroscopy 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO Excluded PRs: 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure) 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO Already up to date. 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO Merged PRs: 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo' 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' 12:18:01 2026-07-07 12:18:01,997 [ scc.merge] INFO 12:18:02 + cp etc/omero.properties etc/omero.properties.bak 12:18:02 + rm etc/omero.properties 12:18:02 + touch etc/omero.properties 12:18:02 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 12:18:02 + ne=252 12:18:02 ++ sed -n 1,252p etc/omero.properties.bak 12:18:02 + line='## 12:18:02 ## omero.properties 12:18:02 ## ---------------- 12:18:02 ## 12:18:02 ## DO NOT EDIT! 12:18:02 ## 12:18:02 ## 12:18:02 ## Any of these properties can be altered by using `omero config`. MODIFYING 12:18:02 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 12:18:02 ## at compile time! 12:18:02 ## 12:18:02 ## For an overview of these properties, see 12:18:02 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 12:18:02 ## 12:18:02 ## Properties marked with "DEVELOPMENT" should not be used in production. 12:18:02 12:18:02 # Comma separated list of Ice transports available to clients. The default 12:18:02 # value ("ssl,tcp") instructs Ice to open the ports specified by the 12:18:02 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 12:18:02 # will prevent all non-encrypted connections to the OMERO server. 12:18:02 # 12:18:02 # Additionally, there are two experimental values for using websockets: 12:18:02 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 12:18:02 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 12:18:02 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 12:18:02 # 12:18:02 # Note: When using websockets behind a web server like nginx, additional 12:18:02 # configuration may be needed. 12:18:02 omero.client.icetransports=ssl,tcp 12:18:02 12:18:02 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 12:18:02 # server 12:18:02 omero.ports.prefix= 12:18:02 12:18:02 # The Glacier2 SSL port number to use 12:18:02 omero.ports.ssl=4064 12:18:02 12:18:02 # The Glacier2 TCP port number to use (unencrypted) 12:18:02 omero.ports.tcp=4063 12:18:02 12:18:02 # The Glacier2 WSS port number to use 12:18:02 omero.ports.wss=4066 12:18:02 12:18:02 # The Glacier2 WS port number to use (unencrypted) 12:18:02 omero.ports.ws=4065 12:18:02 12:18:02 # The IceGrid registry port number to use 12:18:02 omero.ports.registry=4061 12:18:02 12:18:02 ############################################# 12:18:02 ## JVM configuration 12:18:02 ## 12:18:02 ## Note: changes to the omero.jvmcfg properties 12:18:02 ## will *not* be reflected in OMERO.server 12:18:02 ## since they are defined in OMERO.py. 12:18:02 ############################################# 12:18:02 ## (For documentation only) 12:18:02 # Memory strategy which will be used by default. 12:18:02 # Options include: percent, manual 12:18:02 omero.jvmcfg.strategy=percent 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Explicit value for the `-Xmx` argument, e.g. 12:18:02 # "1g" 12:18:02 omero.jvmcfg.heap_size= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Explicit value for the MaxPermSize argument 12:18:02 # to the JVM, e.g. "500M". Ignored for Java8+ 12:18:02 omero.jvmcfg.perm_gen= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Toggles on or off heap dumps on OOMs. Default is "off". 12:18:02 # The special value "tmp" will create the heap dumps in 12:18:02 # your temp directory. 12:18:02 omero.jvmcfg.heap_dump= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Used only by the percent strategy. An integer between 0 12:18:02 # and 100 which is the percent of active memory that will 12:18:02 # be used by the service. 12:18:02 omero.jvmcfg.percent= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Contains other parameters which should be passed to the 12:18:02 # JVM. The value of "append" is treated as if it were on 12:18:02 # the command line so will be separated on whitespace. 12:18:02 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 12:18:02 # results in two new arguments. 12:18:02 # Note that when using `config set` from the command line 12:18:02 # one may need to give a prior `--` option to prevent a value 12:18:02 # starting with `-` from already being parsed as an option, 12:18:02 # and values may need quoting to prevent whitespace or other 12:18:02 # significant characters from being interpreted prematurely. 12:18:02 12:18:02 omero.jvmcfg.append= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Manual override of the total system memory that 12:18:02 # OMERO will *think* is present on the local OS (MB). 12:18:02 # If unset, an attempt will be made to detect the actual 12:18:02 # amount: first by using the Python library `psutil` and 12:18:02 # if that is not installed, by running a Java tool. If 12:18:02 # neither works, 4.0GB is assumed. 12:18:02 omero.jvmcfg.system_memory= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Suggestion for strategies as to the minimum memory 12:18:02 # that they will use for calculating JVM settings (MB). 12:18:02 omero.jvmcfg.min_system_memory=3414 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Suggestion for strategies as to the maximum memory 12:18:02 # that they will use for calculating JVM settings (MB). 12:18:02 omero.jvmcfg.max_system_memory=48000 12:18:02 12:18:02 12:18:02 ############################################# 12:18:02 ## Logging properties 12:18:02 ## 12:18:02 ## Note: changes to the default omero.logging values in 12:18:02 ## this file will *not* be reflected in OMERO.server 12:18:02 ## since they are defined in OMERO.py 12:18:02 ############################################# 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Relative server directory where the log files should be stored. 12:18:02 omero.logging.directory=var/log/ 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Whether the server log files should be rotated at a certain time 12:18:02 # interval. If true, log files will be rolled over at midnight. 12:18:02 # Otherwise, log files will be rolled over at a predetermined size, 12:18:02 # see omero.logging.logsize for more information. 12:18:02 omero.logging.timedlog=false 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # If omero.logging.timedlog is false or unset, specifies the 12:18:02 # maximum size of the server log files in bytes above which a 12:18:02 # new log file should be created. 12:18:02 omero.logging.logsize=5000000 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # If omero.logging.timedlog is false or unset, specifies the 12:18:02 # number of old server log files that should be kept. Old log 12:18:02 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 12:18:02 omero.logging.lognum=9 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Specifies the threshold for the Python servers log files. Logging messages 12:18:02 # which are less severe than this value will be ignored. For a list of 12:18:02 # available values, see https://docs.python.org/3/library/logging.html#levels. 12:18:02 omero.logging.level=20 12:18:02 12:18:02 ############################################# 12:18:02 ## Ice overrides 12:18:02 ## 12:18:02 ## Though not used directly by OMERO, a number 12:18:02 ## of properties prefixed with "Ice.*" will 12:18:02 ## alter the behavior of the OMERO runtime 12:18:02 ## by configuring the Ice communicators. For a 12:18:02 ## full listing see: 12:18:02 ## 12:18:02 ## http://doc.zeroc.com/display/Ice/Property+Reference 12:18:02 ## For more information see 12:18:02 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 12:18:02 ############################################# 12:18:02 12:18:02 # Disable IPv6 by setting to 0. Only needed in 12:18:02 # certain situations. 12:18:02 Ice.IPv6=1 12:18:02 12:18:02 # Glacier2Template IceSSL defaults and overrides, 12:18:02 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 12:18:02 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 12:18:02 # update the corresponding IceSSL. property. 12:18:02 omero.glacier2.IceSSL= 12:18:02 12:18:02 # Glacier2Template SSL maximum allowed protocol (mac bug) 12:18:02 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 12:18:02 # Glacier2Template SSL allowed cipher suites 12:18:02 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 12:18:02 # Glacier2Template SSL verification requirements 12:18:02 omero.glacier2.IceSSL.VerifyPeer=0 12:18:02 # Glacier2Template SSL allowed protocols 12:18:02 omero.glacier2.IceSSL.Protocols=tls1 12:18:02 12:18:02 # Override the default set of OMERO services. 12:18:02 # For example, to run OMERO.server with Blitz and Tables only 12:18:02 # (i.e. disable Processor, DropBox, Indexer, PixelData) 12:18:02 # set this to ``master:Blitz-0,Tables-0``. 12:18:02 # Also use this to distribute OMERO services across multiple nodes, 12:18:02 # for example: 12:18:02 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 12:18:02 # See 12:18:02 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 12:18:02 omero.server.nodedescriptors= 12:18:02 12:18:02 ############################################# 12:18:02 ## Darwin (OS X) specific defaults for templated configuration files only. 12:18:02 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 12:18:02 ## file. 12:18:02 ## Do not set these properties in ``omero config``, instead set the original 12:18:02 ## ``xxx.yyy`` property 12:18:02 ############################################# 12:18:02 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Name of the Python module to use when starting the Tables service 12:18:02 omero.tables.module=runTables 12:18:02 12:18:02 ############################################# 12:18:02 ## Server product name for release artifacts 12:18:02 ############################################# 12:18:02 product.name=OMERO.server 12:18:02 12:18:02 ############################################# 12:18:02 ### Properties below this marker are ignored by 12:18:02 ### omero.install.config_parser.PropertyParser 12:18:02 ### END 12:18:02 12:18:02 ############################################# 12:18:02 ## Library versions 12:18:02 ############################################# 12:18:02 ## 12:18:02 versions.findbugs=1.2.1 12:18:02 versions.ice36=3.6.5 12:18:02 versions.ice36_lib=36 12:18:02 ## internal 12:18:02 versions.omeroshares36=3.6.3 12:18:02 versions.omeromock36=3.6.3 12:18:02 versions.icedb36=3.6.3 12:18:02 versions.ipython=1.2.1 12:18:02 12:18:02 versions.janino=2.5.10 12:18:02 12:18:02 versions.reportng=1.1.1 12:18:02 12:18:02 versions.testng=7.5 12:18:02 versions.velocity=1.4 12:18:02 12:18:02 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 12:18:02 versions.omero-scripts-url=${versions.omero-pypi} 12:18:02 12:18:02 # hard coded, should not be picked up by scc for now! 12:18:02 versions.omero-zarr-pixel-buffer=0.6.1 12:18:02 12:18:02 ### 12:18:02 ### Appended Values 12:18:02 ### 12:18:02 12:18:02 ## Internal dependencies' 12:18:02 + echo '## 12:18:02 ## omero.properties 12:18:02 ## ---------------- 12:18:02 ## 12:18:02 ## DO NOT EDIT! 12:18:02 ## 12:18:02 ## 12:18:02 ## Any of these properties can be altered by using `omero config`. MODIFYING 12:18:02 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 12:18:02 ## at compile time! 12:18:02 ## 12:18:02 ## For an overview of these properties, see 12:18:02 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 12:18:02 ## 12:18:02 ## Properties marked with "DEVELOPMENT" should not be used in production. 12:18:02 12:18:02 # Comma separated list of Ice transports available to clients. The default 12:18:02 # value ("ssl,tcp") instructs Ice to open the ports specified by the 12:18:02 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 12:18:02 # will prevent all non-encrypted connections to the OMERO server. 12:18:02 # 12:18:02 # Additionally, there are two experimental values for using websockets: 12:18:02 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 12:18:02 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 12:18:02 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 12:18:02 # 12:18:02 # Note: When using websockets behind a web server like nginx, additional 12:18:02 # configuration may be needed. 12:18:02 omero.client.icetransports=ssl,tcp 12:18:02 12:18:02 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 12:18:02 # server 12:18:02 omero.ports.prefix= 12:18:02 12:18:02 # The Glacier2 SSL port number to use 12:18:02 omero.ports.ssl=4064 12:18:02 12:18:02 # The Glacier2 TCP port number to use (unencrypted) 12:18:02 omero.ports.tcp=4063 12:18:02 12:18:02 # The Glacier2 WSS port number to use 12:18:02 omero.ports.wss=4066 12:18:02 12:18:02 # The Glacier2 WS port number to use (unencrypted) 12:18:02 omero.ports.ws=4065 12:18:02 12:18:02 # The IceGrid registry port number to use 12:18:02 omero.ports.registry=4061 12:18:02 12:18:02 ############################################# 12:18:02 ## JVM configuration 12:18:02 ## 12:18:02 ## Note: changes to the omero.jvmcfg properties 12:18:02 ## will *not* be reflected in OMERO.server 12:18:02 ## since they are defined in OMERO.py. 12:18:02 ############################################# 12:18:02 ## (For documentation only) 12:18:02 # Memory strategy which will be used by default. 12:18:02 # Options include: percent, manual 12:18:02 omero.jvmcfg.strategy=percent 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Explicit value for the `-Xmx` argument, e.g. 12:18:02 # "1g" 12:18:02 omero.jvmcfg.heap_size= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Explicit value for the MaxPermSize argument 12:18:02 # to the JVM, e.g. "500M". Ignored for Java8+ 12:18:02 omero.jvmcfg.perm_gen= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Toggles on or off heap dumps on OOMs. Default is "off". 12:18:02 # The special value "tmp" will create the heap dumps in 12:18:02 # your temp directory. 12:18:02 omero.jvmcfg.heap_dump= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Used only by the percent strategy. An integer between 0 12:18:02 # and 100 which is the percent of active memory that will 12:18:02 # be used by the service. 12:18:02 omero.jvmcfg.percent= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Contains other parameters which should be passed to the 12:18:02 # JVM. The value of "append" is treated as if it were on 12:18:02 # the command line so will be separated on whitespace. 12:18:02 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 12:18:02 # results in two new arguments. 12:18:02 # Note that when using `config set` from the command line 12:18:02 # one may need to give a prior `--` option to prevent a value 12:18:02 # starting with `-` from already being parsed as an option, 12:18:02 # and values may need quoting to prevent whitespace or other 12:18:02 # significant characters from being interpreted prematurely. 12:18:02 12:18:02 omero.jvmcfg.append= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Manual override of the total system memory that 12:18:02 # OMERO will *think* is present on the local OS (MB). 12:18:02 # If unset, an attempt will be made to detect the actual 12:18:02 # amount: first by using the Python library `psutil` and 12:18:02 # if that is not installed, by running a Java tool. If 12:18:02 # neither works, 4.0GB is assumed. 12:18:02 omero.jvmcfg.system_memory= 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Suggestion for strategies as to the minimum memory 12:18:02 # that they will use for calculating JVM settings (MB). 12:18:02 omero.jvmcfg.min_system_memory=3414 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Suggestion for strategies as to the maximum memory 12:18:02 # that they will use for calculating JVM settings (MB). 12:18:02 omero.jvmcfg.max_system_memory=48000 12:18:02 12:18:02 12:18:02 ############################################# 12:18:02 ## Logging properties 12:18:02 ## 12:18:02 ## Note: changes to the default omero.logging values in 12:18:02 ## this file will *not* be reflected in OMERO.server 12:18:02 ## since they are defined in OMERO.py 12:18:02 ############################################# 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Relative server directory where the log files should be stored. 12:18:02 omero.logging.directory=var/log/ 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Whether the server log files should be rotated at a certain time 12:18:02 # interval. If true, log files will be rolled over at midnight. 12:18:02 # Otherwise, log files will be rolled over at a predetermined size, 12:18:02 # see omero.logging.logsize for more information. 12:18:02 omero.logging.timedlog=false 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # If omero.logging.timedlog is false or unset, specifies the 12:18:02 # maximum size of the server log files in bytes above which a 12:18:02 # new log file should be created. 12:18:02 omero.logging.logsize=5000000 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # If omero.logging.timedlog is false or unset, specifies the 12:18:02 # number of old server log files that should be kept. Old log 12:18:02 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 12:18:02 omero.logging.lognum=9 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Specifies the threshold for the Python servers log files. Logging messages 12:18:02 # which are less severe than this value will be ignored. For a list of 12:18:02 # available values, see https://docs.python.org/3/library/logging.html#levels. 12:18:02 omero.logging.level=20 12:18:02 12:18:02 ############################################# 12:18:02 ## Ice overrides 12:18:02 ## 12:18:02 ## Though not used directly by OMERO, a number 12:18:02 ## of properties prefixed with "Ice.*" will 12:18:02 ## alter the behavior of the OMERO runtime 12:18:02 ## by configuring the Ice communicators. For a 12:18:02 ## full listing see: 12:18:02 ## 12:18:02 ## http://doc.zeroc.com/display/Ice/Property+Reference 12:18:02 ## For more information see 12:18:02 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 12:18:02 ############################################# 12:18:02 12:18:02 # Disable IPv6 by setting to 0. Only needed in 12:18:02 # certain situations. 12:18:02 Ice.IPv6=1 12:18:02 12:18:02 # Glacier2Template IceSSL defaults and overrides, 12:18:02 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 12:18:02 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 12:18:02 # update the corresponding IceSSL. property. 12:18:02 omero.glacier2.IceSSL= 12:18:02 12:18:02 # Glacier2Template SSL maximum allowed protocol (mac bug) 12:18:02 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 12:18:02 # Glacier2Template SSL allowed cipher suites 12:18:02 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 12:18:02 # Glacier2Template SSL verification requirements 12:18:02 omero.glacier2.IceSSL.VerifyPeer=0 12:18:02 # Glacier2Template SSL allowed protocols 12:18:02 omero.glacier2.IceSSL.Protocols=tls1 12:18:02 12:18:02 # Override the default set of OMERO services. 12:18:02 # For example, to run OMERO.server with Blitz and Tables only 12:18:02 # (i.e. disable Processor, DropBox, Indexer, PixelData) 12:18:02 # set this to ``master:Blitz-0,Tables-0``. 12:18:02 # Also use this to distribute OMERO services across multiple nodes, 12:18:02 # for example: 12:18:02 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 12:18:02 # See 12:18:02 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 12:18:02 omero.server.nodedescriptors= 12:18:02 12:18:02 ############################################# 12:18:02 ## Darwin (OS X) specific defaults for templated configuration files only. 12:18:02 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 12:18:02 ## file. 12:18:02 ## Do not set these properties in ``omero config``, instead set the original 12:18:02 ## ``xxx.yyy`` property 12:18:02 ############################################# 12:18:02 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 12:18:02 12:18:02 ## (For documentation only) 12:18:02 # Name of the Python module to use when starting the Tables service 12:18:02 omero.tables.module=runTables 12:18:02 12:18:02 ############################################# 12:18:02 ## Server product name for release artifacts 12:18:02 ############################################# 12:18:02 product.name=OMERO.server 12:18:02 12:18:02 ############################################# 12:18:02 ### Properties below this marker are ignored by 12:18:02 ### omero.install.config_parser.PropertyParser 12:18:02 ### END 12:18:02 12:18:02 ############################################# 12:18:02 ## Library versions 12:18:02 ############################################# 12:18:02 ## 12:18:02 versions.findbugs=1.2.1 12:18:02 versions.ice36=3.6.5 12:18:02 versions.ice36_lib=36 12:18:02 ## internal 12:18:02 versions.omeroshares36=3.6.3 12:18:02 versions.omeromock36=3.6.3 12:18:02 versions.icedb36=3.6.3 12:18:02 versions.ipython=1.2.1 12:18:02 12:18:02 versions.janino=2.5.10 12:18:02 12:18:02 versions.reportng=1.1.1 12:18:02 12:18:02 versions.testng=7.5 12:18:02 versions.velocity=1.4 12:18:02 12:18:02 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 12:18:02 versions.omero-scripts-url=${versions.omero-pypi} 12:18:02 12:18:02 # hard coded, should not be picked up by scc for now! 12:18:02 versions.omero-zarr-pixel-buffer=0.6.1 12:18:02 12:18:02 ### 12:18:02 ### Appended Values 12:18:02 ### 12:18:02 12:18:02 ## Internal dependencies' 12:18:02 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 12:18:02 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 12:18:02 + echo versions.scripts-prefix= 12:18:02 + echo versions.scripts=merge_ci 12:18:02 + cat /home/omero/workspace/OMERO-push/version.properties 12:18:02 + git commit -a -m 'Add version.properties to etc/omero.properties' 12:18:02 [detached HEAD cc67600ce0] Add version.properties to etc/omero.properties 12:18:02 1 file changed, 46 insertions(+), 6 deletions(-) 12:18:02 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 12:18:05 To github.com:snoopycrimecop/openmicroscopy.git 12:18:05 + 8e883bef6f...cc67600ce0 HEAD -> merge_ci (forced update) 12:18:05 Finished: SUCCESS