20:53:29 Started by upstream project "Trigger" build number 3 20:53:29 originally caused by: 20:53:29 Started by user devspace 20:53:29 Running as SYSTEM 20:53:29 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 20:53:29 The recommended git tool is: NONE 20:53:29 No credentials specified 20:53:29 Cloning the remote Git repository 20:53:29 Cloning repository https://github.com/ome/openmicroscopy.git 20:53:29 > git init /home/omero/workspace/OMERO-push/src # timeout=10 20:53:29 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 20:53:29 > git --version # timeout=10 20:53:29 > git --version # 'git version 2.47.3' 20:53:29 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 20:55:25 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 20:55:25 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 20:55:25 Avoid second fetch 20:55:25 > git rev-parse origin/develop^{commit} # timeout=10 20:55:25 Checking out Revision 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 (origin/develop) 20:55:25 > git config core.sparsecheckout # timeout=10 20:55:25 > git checkout -f 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=30 20:55:25 Commit message: "Merge pull request #6441 from sbesson/tmpdir_var_tmp" 20:55:25 First time build. Skipping changelog. 20:55:25 Cleaning workspace 20:55:25 > git rev-parse --verify HEAD # timeout=10 20:55:25 Resetting working tree 20:55:25 > git reset --hard # timeout=10 20:55:25 > git clean -fdx # timeout=10 20:55:25 Copied 1 artifact from "OMERO-python-superbuild-build" build number 1 20:55:25 [OMERO-push] $ /bin/bash -xe /tmp/jenkins9744686667865019244.sh 20:55:25 + python3.11 -mvenv venv 20:55:29 + source /home/omero/workspace/OMERO-push/venv/bin/activate 20:55:29 ++ deactivate nondestructive 20:55:29 ++ '[' -n '' ']' 20:55:29 ++ '[' -n '' ']' 20:55:29 ++ hash -r 20:55:29 ++ '[' -n '' ']' 20:55:29 ++ unset VIRTUAL_ENV 20:55:29 ++ unset VIRTUAL_ENV_PROMPT 20:55:29 ++ '[' '!' nondestructive = nondestructive ']' 20:55:29 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 20:55:29 ++ export VIRTUAL_ENV 20:55:29 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 20:55:29 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 20:55:29 ++ export PATH 20:55:29 ++ '[' -n '' ']' 20:55:29 ++ '[' -z '' ']' 20:55:29 ++ _OLD_VIRTUAL_PS1= 20:55:29 ++ PS1='(venv) ' 20:55:29 ++ export PS1 20:55:29 ++ VIRTUAL_ENV_PROMPT='(venv) ' 20:55:29 ++ export VIRTUAL_ENV_PROMPT 20:55:29 ++ hash -r 20:55:29 + pip install -U pip 20:55:29 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1) 20:55:29 Collecting pip 20:55:29 Using cached pip-25.3-py3-none-any.whl (1.8 MB) 20:55:29 Installing collected packages: pip 20:55:29 Attempting uninstall: pip 20:55:29 Found existing installation: pip 22.3.1 20:55:29 Uninstalling pip-22.3.1: 20:55:29 Successfully uninstalled pip-22.3.1 20:55:30 Successfully installed pip-25.3 20:55:30 + pip install -U scc 20:55:31 Collecting scc 20:55:31 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) 20:55:31 Collecting PyGithub>=1.54 (from 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future-1.0.0-py3-none-any.whl (491 kB) 20:55:32 Using cached pycparser-2.23-py3-none-any.whl (118 kB) 20:55:32 Using cached ruamel_yaml-0.18.17-py3-none-any.whl (121 kB) 20:55:32 Using cached ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (777 kB) 20:55:32 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 20:55:32 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 20:55:32 Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc 20:55:34 20:55:34 Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.11.12 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.1 requests-2.32.5 ruamel.yaml-0.18.17 ruamel.yaml.clib-0.2.15 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 20:55:34 + test -e src 20:55:34 + cd src 20:55:34 ++ git config github.user 20:55:34 + user=snoopycrimecop 20:55:34 + scc merge develop --no-ask --reset --shallow -S success-only 20:55:38 2025-12-17 20:55:38,217 [ scc.merge] INFO Merging Pull Request(s) based on develop 20:55:38 2025-12-17 20:55:38,217 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 20:55:38 2025-12-17 20:55:38,217 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 20:55:38 2025-12-17 20:55:38,217 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 20:55:38 2025-12-17 20:55:38,218 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 20:55:38 2025-12-17 20:55:38,218 [ scc.merge] INFO Excluding Pull Request(s) without successful status 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO Repository: ome/openmicroscopy 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO Excluded PRs: 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6442 snoopycrimecop 'update dependencies' (status: failure) 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure) 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO Already up to date. 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO Merged PRs: 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 20:55:47 2025-12-17 20:55:47,642 [ scc.merge] INFO 20:55:47 + cp etc/omero.properties etc/omero.properties.bak 20:55:47 + rm etc/omero.properties 20:55:47 + touch etc/omero.properties 20:55:47 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 20:55:47 + ne=249 20:55:47 ++ sed -n 1,249p etc/omero.properties.bak 20:55:47 + line='## 20:55:47 ## omero.properties 20:55:47 ## ---------------- 20:55:47 ## 20:55:47 ## DO NOT EDIT! 20:55:47 ## 20:55:47 ## 20:55:47 ## Any of these properties can be altered by using `omero config`. MODIFYING 20:55:47 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 20:55:47 ## at compile time! 20:55:47 ## 20:55:47 ## For an overview of these properties, see 20:55:47 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 20:55:47 ## 20:55:47 ## Properties marked with "DEVELOPMENT" should not be used in production. 20:55:47 20:55:47 # Comma separated list of Ice transports available to clients. The default 20:55:47 # value ("ssl,tcp") instructs Ice to open the ports specified by the 20:55:47 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 20:55:47 # will prevent all non-encrypted connections to the OMERO server. 20:55:47 # 20:55:47 # Additionally, there are two experimental values for using websockets: 20:55:47 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 20:55:47 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 20:55:47 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 20:55:47 # 20:55:47 # Note: When using websockets behind a web server like nginx, additional 20:55:47 # configuration may be needed. 20:55:47 omero.client.icetransports=ssl,tcp 20:55:47 20:55:47 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 20:55:47 # server 20:55:47 omero.ports.prefix= 20:55:47 20:55:47 # The Glacier2 SSL port number to use 20:55:47 omero.ports.ssl=4064 20:55:47 20:55:47 # The Glacier2 TCP port number to use (unencrypted) 20:55:47 omero.ports.tcp=4063 20:55:47 20:55:47 # The Glacier2 WSS port number to use 20:55:47 omero.ports.wss=4066 20:55:47 20:55:47 # The Glacier2 WS port number to use (unencrypted) 20:55:47 omero.ports.ws=4065 20:55:47 20:55:47 # The IceGrid registry port number to use 20:55:47 omero.ports.registry=4061 20:55:47 20:55:47 ############################################# 20:55:47 ## JVM configuration 20:55:47 ## 20:55:47 ## Note: changes to the omero.jvmcfg properties 20:55:47 ## will *not* be reflected in OMERO.server 20:55:47 ## since they are defined in OMERO.py. 20:55:47 ############################################# 20:55:47 ## (For documentation only) 20:55:47 # Memory strategy which will be used by default. 20:55:47 # Options include: percent, manual 20:55:47 omero.jvmcfg.strategy=percent 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Explicit value for the `-Xmx` argument, e.g. 20:55:47 # "1g" 20:55:47 omero.jvmcfg.heap_size= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Explicit value for the MaxPermSize argument 20:55:47 # to the JVM, e.g. "500M". Ignored for Java8+ 20:55:47 omero.jvmcfg.perm_gen= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Toggles on or off heap dumps on OOMs. Default is "off". 20:55:47 # The special value "tmp" will create the heap dumps in 20:55:47 # your temp directory. 20:55:47 omero.jvmcfg.heap_dump= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Used only by the percent strategy. An integer between 0 20:55:47 # and 100 which is the percent of active memory that will 20:55:47 # be used by the service. 20:55:47 omero.jvmcfg.percent= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Contains other parameters which should be passed to the 20:55:47 # JVM. The value of "append" is treated as if it were on 20:55:47 # the command line so will be separated on whitespace. 20:55:47 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 20:55:47 # results in two new arguments. 20:55:47 # Note that when using `config set` from the command line 20:55:47 # one may need to give a prior `--` option to prevent a value 20:55:47 # starting with `-` from already being parsed as an option, 20:55:47 # and values may need quoting to prevent whitespace or other 20:55:47 # significant characters from being interpreted prematurely. 20:55:47 20:55:47 omero.jvmcfg.append= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Manual override of the total system memory that 20:55:47 # OMERO will *think* is present on the local OS (MB). 20:55:47 # If unset, an attempt will be made to detect the actual 20:55:47 # amount: first by using the Python library `psutil` and 20:55:47 # if that is not installed, by running a Java tool. If 20:55:47 # neither works, 4.0GB is assumed. 20:55:47 omero.jvmcfg.system_memory= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Suggestion for strategies as to the minimum memory 20:55:47 # that they will use for calculating JVM settings (MB). 20:55:47 omero.jvmcfg.min_system_memory=3414 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Suggestion for strategies as to the maximum memory 20:55:47 # that they will use for calculating JVM settings (MB). 20:55:47 omero.jvmcfg.max_system_memory=48000 20:55:47 20:55:47 20:55:47 ############################################# 20:55:47 ## Logging properties 20:55:47 ## 20:55:47 ## Note: changes to the default omero.logging values in 20:55:47 ## this file will *not* be reflected in OMERO.server 20:55:47 ## since they are defined in OMERO.py 20:55:47 ############################################# 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Relative server directory where the log files should be stored. 20:55:47 omero.logging.directory=var/log/ 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Whether the server log files should be rotated at a certain time 20:55:47 # interval. If true, log files will be rolled over at midnight. 20:55:47 # Otherwise, log files will be rolled over at a predetermined size, 20:55:47 # see omero.logging.logsize for more information. 20:55:47 omero.logging.timedlog=false 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # If omero.logging.timedlog is false or unset, specifies the 20:55:47 # maximum size of the server log files in bytes above which a 20:55:47 # new log file should be created. 20:55:47 omero.logging.logsize=5000000 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # If omero.logging.timedlog is false or unset, specifies the 20:55:47 # number of old server log files that should be kept. Old log 20:55:47 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 20:55:47 omero.logging.lognum=9 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Specifies the threshold for the Python servers log files. Logging messages 20:55:47 # which are less severe than this value will be ignored. For a list of 20:55:47 # available values, see https://docs.python.org/3/library/logging.html#levels. 20:55:47 omero.logging.level=20 20:55:47 20:55:47 ############################################# 20:55:47 ## Ice overrides 20:55:47 ## 20:55:47 ## Though not used directly by OMERO, a number 20:55:47 ## of properties prefixed with "Ice.*" will 20:55:47 ## alter the behavior of the OMERO runtime 20:55:47 ## by configuring the Ice communicators. For a 20:55:47 ## full listing see: 20:55:47 ## 20:55:47 ## http://doc.zeroc.com/display/Ice/Property+Reference 20:55:47 ## For more information see 20:55:47 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 20:55:47 ############################################# 20:55:47 20:55:47 # Disable IPv6 by setting to 0. Only needed in 20:55:47 # certain situations. 20:55:47 Ice.IPv6=1 20:55:47 20:55:47 # Glacier2Template IceSSL defaults and overrides, 20:55:47 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 20:55:47 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 20:55:47 # update the corresponding IceSSL. property. 20:55:47 omero.glacier2.IceSSL= 20:55:47 20:55:47 # Glacier2Template SSL maximum allowed protocol (mac bug) 20:55:47 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 20:55:47 # Glacier2Template SSL allowed cipher suites 20:55:47 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 20:55:47 # Glacier2Template SSL verification requirements 20:55:47 omero.glacier2.IceSSL.VerifyPeer=0 20:55:47 # Glacier2Template SSL allowed protocols 20:55:47 omero.glacier2.IceSSL.Protocols=tls1 20:55:47 20:55:47 # Override the default set of OMERO services. 20:55:47 # For example, to run OMERO.server with Blitz and Tables only 20:55:47 # (i.e. disable Processor, DropBox, Indexer, PixelData) 20:55:47 # set this to ``master:Blitz-0,Tables-0``. 20:55:47 # Also use this to distribute OMERO services across multiple nodes, 20:55:47 # for example: 20:55:47 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 20:55:47 # See 20:55:47 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 20:55:47 omero.server.nodedescriptors= 20:55:47 20:55:47 ############################################# 20:55:47 ## Darwin (OS X) specific defaults for templated configuration files only. 20:55:47 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 20:55:47 ## file. 20:55:47 ## Do not set these properties in ``omero config``, instead set the original 20:55:47 ## ``xxx.yyy`` property 20:55:47 ############################################# 20:55:47 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Name of the Python module to use when starting the Tables service 20:55:47 omero.tables.module=runTables 20:55:47 20:55:47 ############################################# 20:55:47 ## Server product name for release artifacts 20:55:47 ############################################# 20:55:47 product.name=OMERO.server 20:55:47 20:55:47 ############################################# 20:55:47 ### Properties below this marker are ignored by 20:55:47 ### omero.install.config_parser.PropertyParser 20:55:47 ### END 20:55:47 20:55:47 ############################################# 20:55:47 ## Library versions 20:55:47 ############################################# 20:55:47 ## 20:55:47 versions.findbugs=1.2.1 20:55:47 versions.ice36=3.6.5 20:55:47 versions.ice36_lib=36 20:55:47 ## internal 20:55:47 versions.omeroshares36=3.6.3 20:55:47 versions.omeromock36=3.6.3 20:55:47 versions.icedb36=3.6.3 20:55:47 versions.ipython=1.2.1 20:55:47 20:55:47 versions.janino=2.5.10 20:55:47 20:55:47 versions.reportng=1.1.1 20:55:47 20:55:47 versions.testng=7.5 20:55:47 versions.velocity=1.4 20:55:47 20:55:47 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 20:55:47 versions.omero-scripts-url=${versions.omero-pypi} 20:55:47 20:55:47 ### 20:55:47 ### Appended Values 20:55:47 ### 20:55:47 20:55:47 ## Internal dependencies' 20:55:47 + echo '## 20:55:47 ## omero.properties 20:55:47 ## ---------------- 20:55:47 ## 20:55:47 ## DO NOT EDIT! 20:55:47 ## 20:55:47 ## 20:55:47 ## Any of these properties can be altered by using `omero config`. MODIFYING 20:55:47 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 20:55:47 ## at compile time! 20:55:47 ## 20:55:47 ## For an overview of these properties, see 20:55:47 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 20:55:47 ## 20:55:47 ## Properties marked with "DEVELOPMENT" should not be used in production. 20:55:47 20:55:47 # Comma separated list of Ice transports available to clients. The default 20:55:47 # value ("ssl,tcp") instructs Ice to open the ports specified by the 20:55:47 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 20:55:47 # will prevent all non-encrypted connections to the OMERO server. 20:55:47 # 20:55:47 # Additionally, there are two experimental values for using websockets: 20:55:47 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 20:55:47 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 20:55:47 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 20:55:47 # 20:55:47 # Note: When using websockets behind a web server like nginx, additional 20:55:47 # configuration may be needed. 20:55:47 omero.client.icetransports=ssl,tcp 20:55:47 20:55:47 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 20:55:47 # server 20:55:47 omero.ports.prefix= 20:55:47 20:55:47 # The Glacier2 SSL port number to use 20:55:47 omero.ports.ssl=4064 20:55:47 20:55:47 # The Glacier2 TCP port number to use (unencrypted) 20:55:47 omero.ports.tcp=4063 20:55:47 20:55:47 # The Glacier2 WSS port number to use 20:55:47 omero.ports.wss=4066 20:55:47 20:55:47 # The Glacier2 WS port number to use (unencrypted) 20:55:47 omero.ports.ws=4065 20:55:47 20:55:47 # The IceGrid registry port number to use 20:55:47 omero.ports.registry=4061 20:55:47 20:55:47 ############################################# 20:55:47 ## JVM configuration 20:55:47 ## 20:55:47 ## Note: changes to the omero.jvmcfg properties 20:55:47 ## will *not* be reflected in OMERO.server 20:55:47 ## since they are defined in OMERO.py. 20:55:47 ############################################# 20:55:47 ## (For documentation only) 20:55:47 # Memory strategy which will be used by default. 20:55:47 # Options include: percent, manual 20:55:47 omero.jvmcfg.strategy=percent 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Explicit value for the `-Xmx` argument, e.g. 20:55:47 # "1g" 20:55:47 omero.jvmcfg.heap_size= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Explicit value for the MaxPermSize argument 20:55:47 # to the JVM, e.g. "500M". Ignored for Java8+ 20:55:47 omero.jvmcfg.perm_gen= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Toggles on or off heap dumps on OOMs. Default is "off". 20:55:47 # The special value "tmp" will create the heap dumps in 20:55:47 # your temp directory. 20:55:47 omero.jvmcfg.heap_dump= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Used only by the percent strategy. An integer between 0 20:55:47 # and 100 which is the percent of active memory that will 20:55:47 # be used by the service. 20:55:47 omero.jvmcfg.percent= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Contains other parameters which should be passed to the 20:55:47 # JVM. The value of "append" is treated as if it were on 20:55:47 # the command line so will be separated on whitespace. 20:55:47 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 20:55:47 # results in two new arguments. 20:55:47 # Note that when using `config set` from the command line 20:55:47 # one may need to give a prior `--` option to prevent a value 20:55:47 # starting with `-` from already being parsed as an option, 20:55:47 # and values may need quoting to prevent whitespace or other 20:55:47 # significant characters from being interpreted prematurely. 20:55:47 20:55:47 omero.jvmcfg.append= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Manual override of the total system memory that 20:55:47 # OMERO will *think* is present on the local OS (MB). 20:55:47 # If unset, an attempt will be made to detect the actual 20:55:47 # amount: first by using the Python library `psutil` and 20:55:47 # if that is not installed, by running a Java tool. If 20:55:47 # neither works, 4.0GB is assumed. 20:55:47 omero.jvmcfg.system_memory= 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Suggestion for strategies as to the minimum memory 20:55:47 # that they will use for calculating JVM settings (MB). 20:55:47 omero.jvmcfg.min_system_memory=3414 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Suggestion for strategies as to the maximum memory 20:55:47 # that they will use for calculating JVM settings (MB). 20:55:47 omero.jvmcfg.max_system_memory=48000 20:55:47 20:55:47 20:55:47 ############################################# 20:55:47 ## Logging properties 20:55:47 ## 20:55:47 ## Note: changes to the default omero.logging values in 20:55:47 ## this file will *not* be reflected in OMERO.server 20:55:47 ## since they are defined in OMERO.py 20:55:47 ############################################# 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Relative server directory where the log files should be stored. 20:55:47 omero.logging.directory=var/log/ 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Whether the server log files should be rotated at a certain time 20:55:47 # interval. If true, log files will be rolled over at midnight. 20:55:47 # Otherwise, log files will be rolled over at a predetermined size, 20:55:47 # see omero.logging.logsize for more information. 20:55:47 omero.logging.timedlog=false 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # If omero.logging.timedlog is false or unset, specifies the 20:55:47 # maximum size of the server log files in bytes above which a 20:55:47 # new log file should be created. 20:55:47 omero.logging.logsize=5000000 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # If omero.logging.timedlog is false or unset, specifies the 20:55:47 # number of old server log files that should be kept. Old log 20:55:47 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 20:55:47 omero.logging.lognum=9 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Specifies the threshold for the Python servers log files. Logging messages 20:55:47 # which are less severe than this value will be ignored. For a list of 20:55:47 # available values, see https://docs.python.org/3/library/logging.html#levels. 20:55:47 omero.logging.level=20 20:55:47 20:55:47 ############################################# 20:55:47 ## Ice overrides 20:55:47 ## 20:55:47 ## Though not used directly by OMERO, a number 20:55:47 ## of properties prefixed with "Ice.*" will 20:55:47 ## alter the behavior of the OMERO runtime 20:55:47 ## by configuring the Ice communicators. For a 20:55:47 ## full listing see: 20:55:47 ## 20:55:47 ## http://doc.zeroc.com/display/Ice/Property+Reference 20:55:47 ## For more information see 20:55:47 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 20:55:47 ############################################# 20:55:47 20:55:47 # Disable IPv6 by setting to 0. Only needed in 20:55:47 # certain situations. 20:55:47 Ice.IPv6=1 20:55:47 20:55:47 # Glacier2Template IceSSL defaults and overrides, 20:55:47 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 20:55:47 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 20:55:47 # update the corresponding IceSSL. property. 20:55:47 omero.glacier2.IceSSL= 20:55:47 20:55:47 # Glacier2Template SSL maximum allowed protocol (mac bug) 20:55:47 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 20:55:47 # Glacier2Template SSL allowed cipher suites 20:55:47 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 20:55:47 # Glacier2Template SSL verification requirements 20:55:47 omero.glacier2.IceSSL.VerifyPeer=0 20:55:47 # Glacier2Template SSL allowed protocols 20:55:47 omero.glacier2.IceSSL.Protocols=tls1 20:55:47 20:55:47 # Override the default set of OMERO services. 20:55:47 # For example, to run OMERO.server with Blitz and Tables only 20:55:47 # (i.e. disable Processor, DropBox, Indexer, PixelData) 20:55:47 # set this to ``master:Blitz-0,Tables-0``. 20:55:47 # Also use this to distribute OMERO services across multiple nodes, 20:55:47 # for example: 20:55:47 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 20:55:47 # See 20:55:47 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 20:55:47 omero.server.nodedescriptors= 20:55:47 20:55:47 ############################################# 20:55:47 ## Darwin (OS X) specific defaults for templated configuration files only. 20:55:47 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 20:55:47 ## file. 20:55:47 ## Do not set these properties in ``omero config``, instead set the original 20:55:47 ## ``xxx.yyy`` property 20:55:47 ############################################# 20:55:47 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 20:55:47 20:55:47 ## (For documentation only) 20:55:47 # Name of the Python module to use when starting the Tables service 20:55:47 omero.tables.module=runTables 20:55:47 20:55:47 ############################################# 20:55:47 ## Server product name for release artifacts 20:55:47 ############################################# 20:55:47 product.name=OMERO.server 20:55:47 20:55:47 ############################################# 20:55:47 ### Properties below this marker are ignored by 20:55:47 ### omero.install.config_parser.PropertyParser 20:55:47 ### END 20:55:47 20:55:47 ############################################# 20:55:47 ## Library versions 20:55:47 ############################################# 20:55:47 ## 20:55:47 versions.findbugs=1.2.1 20:55:47 versions.ice36=3.6.5 20:55:47 versions.ice36_lib=36 20:55:47 ## internal 20:55:47 versions.omeroshares36=3.6.3 20:55:47 versions.omeromock36=3.6.3 20:55:47 versions.icedb36=3.6.3 20:55:47 versions.ipython=1.2.1 20:55:47 20:55:47 versions.janino=2.5.10 20:55:47 20:55:47 versions.reportng=1.1.1 20:55:47 20:55:47 versions.testng=7.5 20:55:47 versions.velocity=1.4 20:55:47 20:55:47 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 20:55:47 versions.omero-scripts-url=${versions.omero-pypi} 20:55:47 20:55:47 ### 20:55:47 ### Appended Values 20:55:47 ### 20:55:47 20:55:47 ## Internal dependencies' 20:55:47 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 20:55:47 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 20:55:47 + echo versions.scripts-prefix= 20:55:47 + echo versions.scripts=merge_ci 20:55:47 + cat /home/omero/workspace/OMERO-push/version.properties 20:55:47 + git commit -a -m 'Add version.properties to etc/omero.properties' 20:55:47 [detached HEAD 82ef22269e] Add version.properties to etc/omero.properties 20:55:47 1 file changed, 46 insertions(+), 7 deletions(-) 20:55:47 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 20:55:49 To github.com:snoopycrimecop/openmicroscopy.git 20:55:49 + c91b7e1d6e...82ef22269e HEAD -> merge_ci (forced update) 20:55:49 Finished: SUCCESS