16:17:37 Started by upstream project "Trigger" build number 1 16:17:37 originally caused by: 16:17:37 Started by user devspace 16:17:37 Running as SYSTEM 16:17:37 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 16:17:37 The recommended git tool is: NONE 16:17:37 No credentials specified 16:17:37 Cloning the remote Git repository 16:17:37 Cloning repository https://github.com/ome/openmicroscopy.git 16:17:37 > git init /home/omero/workspace/OMERO-push/src # timeout=10 16:17:37 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 16:17:37 > git --version # timeout=10 16:17:37 > git --version # 'git version 2.39.3' 16:17:37 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 16:20:55 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 16:20:55 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 16:20:55 Avoid second fetch 16:20:55 > git rev-parse origin/develop^{commit} # timeout=10 16:20:55 Checking out Revision 8398c91cfbb1f0e7a0ac1be24898132799639e3c (origin/develop) 16:20:55 > git config core.sparsecheckout # timeout=10 16:20:55 > git checkout -f 8398c91cfbb1f0e7a0ac1be24898132799639e3c # timeout=30 16:20:55 Commit message: "Merge pull request #6373 from jburel/relase_5.6.10" 16:20:55 First time build. Skipping changelog. 16:20:55 Cleaning workspace 16:20:55 > git rev-parse --verify HEAD # timeout=10 16:20:55 Resetting working tree 16:20:55 > git reset --hard # timeout=10 16:20:56 > git clean -fdx # timeout=10 16:20:56 Copied 1 artifact from "OMERO-python-superbuild-build" build number 1 16:20:56 [OMERO-push] $ /bin/bash -xe /tmp/jenkins17695829543260386219.sh 16:20:56 + python3 -mvenv venv 16:20:59 + source /home/omero/workspace/OMERO-push/venv/bin/activate 16:20:59 ++ deactivate nondestructive 16:20:59 ++ '[' -n '' ']' 16:20:59 ++ '[' -n '' ']' 16:20:59 ++ '[' -n /bin/bash -o -n '' ']' 16:20:59 ++ hash -r 16:20:59 ++ '[' -n '' ']' 16:20:59 ++ unset VIRTUAL_ENV 16:20:59 ++ '[' '!' nondestructive = nondestructive ']' 16:20:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 16:20:59 ++ export VIRTUAL_ENV 16:20:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:20:59 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:20:59 ++ export PATH 16:20:59 ++ '[' -n '' ']' 16:20:59 ++ '[' -z '' ']' 16:20:59 ++ _OLD_VIRTUAL_PS1= 16:20:59 ++ PS1='(venv) ' 16:20:59 ++ export PS1 16:20:59 ++ '[' -n /bin/bash -o -n '' ']' 16:20:59 ++ hash -r 16:20:59 + pip install -U pip 16:20:59 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3) 16:20:59 Collecting pip 16:20:59 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 16:20:59 Installing collected packages: pip 16:20:59 Attempting uninstall: pip 16:20:59 Found existing installation: pip 21.2.3 16:20:59 Uninstalling pip-21.2.3: 16:20:59 Successfully uninstalled pip-21.2.3 16:21:01 Successfully installed pip-24.0 16:21:01 + pip install -U scc 16:21:01 Collecting scc 16:21:01 Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) 16:21:02 Collecting PyGithub>=1.54 (from scc) 16:21:02 Using cached 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cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) 16:21:03 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) 16:21:03 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) 16:21:03 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) 16:21:03 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 16:21:03 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) 16:21:03 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 16:21:03 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) 16:21:03 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 16:21:03 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) 16:21:03 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 16:21:03 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) 16:21:03 Using cached pycparser-2.21-py2.py3-none-any.whl.metadata (1.1 kB) 16:21:03 Using cached scc-0.19.1-py3-none-any.whl (48 kB) 16:21:03 Using cached PyGithub-2.2.0-py3-none-any.whl (350 kB) 16:21:03 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 16:21:03 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 16:21:03 Using cached future-1.0.0-py3-none-any.whl (491 kB) 16:21:03 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) 16:21:03 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 16:21:03 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 16:21:03 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) 16:21:03 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) 16:21:03 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 16:21:03 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) 16:21:03 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 16:21:03 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) 16:21:03 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 16:21:03 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) 16:21:03 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 16:21:03 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB) 16:21:03 Using cached idna-3.6-py3-none-any.whl (61 kB) 16:21:03 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) 16:21:03 Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) 16:21:04 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc 16:21:05 Successfully installed Deprecated-1.2.14 PyGithub-2.2.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.6 pycparser-2.21 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.10.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0 16:21:06 + test -e src 16:21:06 + cd src 16:21:06 ++ git config github.user 16:21:06 + user=snoopycrimecop 16:21:06 + scc merge develop --no-ask --reset --shallow -S success-only 16:21:09 2024-03-14 16:21:09,949 [ scc.merge] INFO Merging Pull Request(s) based on develop 16:21:09 2024-03-14 16:21:09,950 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 16:21:09 2024-03-14 16:21:09,950 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 16:21:09 2024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 16:21:09 2024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 16:21:09 2024-03-14 16:21:09,950 [ scc.merge] INFO Excluding Pull Request(s) without successful status 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO Repository: ome/openmicroscopy 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO Excluded PRs: 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude) 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO Already up to date. 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO Merged PRs: 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6309 jburel 'add try block' 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6376 snoopycrimecop 'update dependencies' 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6377 sbesson 'Removal of python-future compatibility' 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO - PR 6378 DavidStirling 'Update tests for revised webclient annotations json' 16:21:33 2024-03-14 16:21:33,151 [ scc.merge] INFO 16:21:33 + cp etc/omero.properties etc/omero.properties.bak 16:21:33 + rm etc/omero.properties 16:21:33 + touch etc/omero.properties 16:21:33 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 16:21:33 + ne=210 16:21:33 ++ sed -n 1,210p etc/omero.properties.bak 16:21:33 + line='## 16:21:33 ## omero.properties 16:21:33 ## ---------------- 16:21:33 ## 16:21:33 ## DO NOT EDIT! 16:21:33 ## 16:21:33 ## 16:21:33 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:21:33 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:21:33 ## at compile time! 16:21:33 ## 16:21:33 ## For an overview of these properties, see 16:21:33 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:21:33 ## 16:21:33 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:21:33 16:21:33 # Comma separated list of Ice transports available to clients. The default 16:21:33 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:21:33 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:21:33 # will prevent all non-encrypted connections to the OMERO server. 16:21:33 # 16:21:33 # Additionally, there are two experimental values for using websockets: 16:21:33 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:21:33 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:21:33 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:21:33 # 16:21:33 # Note: When using websockets behind a web server like nginx, additional 16:21:33 # configuration may be needed. 16:21:33 omero.client.icetransports=ssl,tcp 16:21:33 16:21:33 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:21:33 # server 16:21:33 omero.ports.prefix= 16:21:33 16:21:33 # The Glacier2 SSL port number to use 16:21:33 omero.ports.ssl=4064 16:21:33 16:21:33 # The Glacier2 TCP port number to use (unencrypted) 16:21:33 omero.ports.tcp=4063 16:21:33 16:21:33 # The Glacier2 WSS port number to use 16:21:33 omero.ports.wss=4066 16:21:33 16:21:33 # The Glacier2 WS port number to use (unencrypted) 16:21:33 omero.ports.ws=4065 16:21:33 16:21:33 # The IceGrid registry port number to use 16:21:33 omero.ports.registry=4061 16:21:33 16:21:33 ############################################# 16:21:33 ## JVM configuration 16:21:33 ## 16:21:33 ## Note: changes to the omero.jvmcfg properties 16:21:33 ## will *not* be reflected in the compiled server 16:21:33 ## since they are defined in a Python file. 16:21:33 ############################################# 16:21:33 ## (For documentation only) 16:21:33 # Memory strategy which will be used by default. 16:21:33 # Options include: percent, manual 16:21:33 omero.jvmcfg.strategy=percent 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Explicit value for the `-Xmx` argument, e.g. 16:21:33 # "1g" 16:21:33 omero.jvmcfg.heap_size= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Explicit value for the MaxPermSize argument 16:21:33 # to the JVM, e.g. "500M". Ignored for Java8+ 16:21:33 omero.jvmcfg.perm_gen= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Toggles on or off heap dumps on OOMs. Default is "off". 16:21:33 # The special value "tmp" will create the heap dumps in 16:21:33 # your temp directory. 16:21:33 omero.jvmcfg.heap_dump= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Used only by the percent strategy. An integer between 0 16:21:33 # and 100 which is the percent of active memory that will 16:21:33 # be used by the service. 16:21:33 omero.jvmcfg.percent= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Contains other parameters which should be passed to the 16:21:33 # JVM. The value of "append" is treated as if it were on 16:21:33 # the command line so will be separated on whitespace. 16:21:33 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:21:33 # results in two new arguments. 16:21:33 # Note that when using `config set` from the command line 16:21:33 # one may need to give a prior `--` option to prevent a value 16:21:33 # starting with `-` from already being parsed as an option, 16:21:33 # and values may need quoting to prevent whitespace or other 16:21:33 # significant characters from being interpreted prematurely. 16:21:33 16:21:33 omero.jvmcfg.append= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Manual override of the total system memory that 16:21:33 # OMERO will *think* is present on the local OS (MB). 16:21:33 # If unset, an attempt will be made to detect the actual 16:21:33 # amount: first by using the Python library `psutil` and 16:21:33 # if that is not installed, by running a Java tool. If 16:21:33 # neither works, 4.0GB is assumed. 16:21:33 omero.jvmcfg.system_memory= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Suggestion for strategies as to the minimum memory 16:21:33 # that they will use for calculating JVM settings (MB). 16:21:33 omero.jvmcfg.min_system_memory=3414 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Suggestion for strategies as to the maximum memory 16:21:33 # that they will use for calculating JVM settings (MB). 16:21:33 omero.jvmcfg.max_system_memory=48000 16:21:33 16:21:33 16:21:33 ############################################# 16:21:33 ## Ice overrides 16:21:33 ## 16:21:33 ## Though not used directly by OMERO, a number 16:21:33 ## of properties prefixed with "Ice.*" will 16:21:33 ## alter the behavior of the OMERO runtime 16:21:33 ## by configuring the Ice communicators. For a 16:21:33 ## full listing see: 16:21:33 ## 16:21:33 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:21:33 ## For more information see 16:21:33 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:21:33 ############################################# 16:21:33 16:21:33 # Disable IPv6 by setting to 0. Only needed in 16:21:33 # certain situations. 16:21:33 Ice.IPv6=1 16:21:33 16:21:33 # Glacier2Template IceSSL defaults and overrides, 16:21:33 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:21:33 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:21:33 # update the corresponding IceSSL. property. 16:21:33 omero.glacier2.IceSSL= 16:21:33 16:21:33 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:21:33 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:21:33 # Glacier2Template SSL allowed cipher suites 16:21:33 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:21:33 # Glacier2Template SSL verification requirements 16:21:33 omero.glacier2.IceSSL.VerifyPeer=0 16:21:33 # Glacier2Template SSL allowed protocols 16:21:33 omero.glacier2.IceSSL.Protocols=tls1 16:21:33 16:21:33 # Override the default set of OMERO services. 16:21:33 # For example, to run OMERO.server with Blitz and Tables only 16:21:33 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:21:33 # set this to ``master:Blitz-0,Tables-0``. 16:21:33 # Also use this to distribute OMERO services across multiple nodes, 16:21:33 # for example: 16:21:33 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:21:33 # See 16:21:33 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:21:33 omero.server.nodedescriptors= 16:21:33 16:21:33 ############################################# 16:21:33 ## Darwin (OS X) specific defaults for templated configuration files only. 16:21:33 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:21:33 ## file. 16:21:33 ## Do not set these properties in ``omero config``, instead set the original 16:21:33 ## ``xxx.yyy`` property 16:21:33 ############################################# 16:21:33 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:21:33 16:21:33 16:21:33 16:21:33 ############################################# 16:21:33 ## Server product name for release artifacts 16:21:33 ############################################# 16:21:33 product.name=OMERO.server 16:21:33 16:21:33 ############################################# 16:21:33 ### Properties below this marker are ignored by 16:21:33 ### omero.install.config_parser.PropertyParser 16:21:33 ### END 16:21:33 16:21:33 ############################################# 16:21:33 ## Library versions 16:21:33 ############################################# 16:21:33 ## 16:21:33 versions.findbugs=1.2.1 16:21:33 versions.ice36=3.6.5 16:21:33 versions.ice36_lib=36 16:21:33 ## internal 16:21:33 versions.omeroshares36=3.6.3 16:21:33 versions.omeromock36=3.6.3 16:21:33 versions.icedb36=3.6.3 16:21:33 versions.ipython=1.2.1 16:21:33 16:21:33 versions.janino=2.5.10 16:21:33 16:21:33 versions.reportng=1.1.1 16:21:33 16:21:33 versions.testng=7.5 16:21:33 versions.velocity=1.4 16:21:33 16:21:33 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:21:33 versions.omero-scripts-url=${versions.omero-pypi} 16:21:33 16:21:33 ### 16:21:33 ### Appended Values 16:21:33 ### 16:21:33 16:21:33 ## Internal dependencies' 16:21:33 + echo '## 16:21:33 ## omero.properties 16:21:33 ## ---------------- 16:21:33 ## 16:21:33 ## DO NOT EDIT! 16:21:33 ## 16:21:33 ## 16:21:33 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:21:33 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:21:33 ## at compile time! 16:21:33 ## 16:21:33 ## For an overview of these properties, see 16:21:33 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:21:33 ## 16:21:33 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:21:33 16:21:33 # Comma separated list of Ice transports available to clients. The default 16:21:33 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:21:33 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:21:33 # will prevent all non-encrypted connections to the OMERO server. 16:21:33 # 16:21:33 # Additionally, there are two experimental values for using websockets: 16:21:33 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:21:33 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:21:33 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:21:33 # 16:21:33 # Note: When using websockets behind a web server like nginx, additional 16:21:33 # configuration may be needed. 16:21:33 omero.client.icetransports=ssl,tcp 16:21:33 16:21:33 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:21:33 # server 16:21:33 omero.ports.prefix= 16:21:33 16:21:33 # The Glacier2 SSL port number to use 16:21:33 omero.ports.ssl=4064 16:21:33 16:21:33 # The Glacier2 TCP port number to use (unencrypted) 16:21:33 omero.ports.tcp=4063 16:21:33 16:21:33 # The Glacier2 WSS port number to use 16:21:33 omero.ports.wss=4066 16:21:33 16:21:33 # The Glacier2 WS port number to use (unencrypted) 16:21:33 omero.ports.ws=4065 16:21:33 16:21:33 # The IceGrid registry port number to use 16:21:33 omero.ports.registry=4061 16:21:33 16:21:33 ############################################# 16:21:33 ## JVM configuration 16:21:33 ## 16:21:33 ## Note: changes to the omero.jvmcfg properties 16:21:33 ## will *not* be reflected in the compiled server 16:21:33 ## since they are defined in a Python file. 16:21:33 ############################################# 16:21:33 ## (For documentation only) 16:21:33 # Memory strategy which will be used by default. 16:21:33 # Options include: percent, manual 16:21:33 omero.jvmcfg.strategy=percent 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Explicit value for the `-Xmx` argument, e.g. 16:21:33 # "1g" 16:21:33 omero.jvmcfg.heap_size= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Explicit value for the MaxPermSize argument 16:21:33 # to the JVM, e.g. "500M". Ignored for Java8+ 16:21:33 omero.jvmcfg.perm_gen= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Toggles on or off heap dumps on OOMs. Default is "off". 16:21:33 # The special value "tmp" will create the heap dumps in 16:21:33 # your temp directory. 16:21:33 omero.jvmcfg.heap_dump= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Used only by the percent strategy. An integer between 0 16:21:33 # and 100 which is the percent of active memory that will 16:21:33 # be used by the service. 16:21:33 omero.jvmcfg.percent= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Contains other parameters which should be passed to the 16:21:33 # JVM. The value of "append" is treated as if it were on 16:21:33 # the command line so will be separated on whitespace. 16:21:33 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:21:33 # results in two new arguments. 16:21:33 # Note that when using `config set` from the command line 16:21:33 # one may need to give a prior `--` option to prevent a value 16:21:33 # starting with `-` from already being parsed as an option, 16:21:33 # and values may need quoting to prevent whitespace or other 16:21:33 # significant characters from being interpreted prematurely. 16:21:33 16:21:33 omero.jvmcfg.append= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Manual override of the total system memory that 16:21:33 # OMERO will *think* is present on the local OS (MB). 16:21:33 # If unset, an attempt will be made to detect the actual 16:21:33 # amount: first by using the Python library `psutil` and 16:21:33 # if that is not installed, by running a Java tool. If 16:21:33 # neither works, 4.0GB is assumed. 16:21:33 omero.jvmcfg.system_memory= 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Suggestion for strategies as to the minimum memory 16:21:33 # that they will use for calculating JVM settings (MB). 16:21:33 omero.jvmcfg.min_system_memory=3414 16:21:33 16:21:33 ## (For documentation only) 16:21:33 # Suggestion for strategies as to the maximum memory 16:21:33 # that they will use for calculating JVM settings (MB). 16:21:33 omero.jvmcfg.max_system_memory=48000 16:21:33 16:21:33 16:21:33 ############################################# 16:21:33 ## Ice overrides 16:21:33 ## 16:21:33 ## Though not used directly by OMERO, a number 16:21:33 ## of properties prefixed with "Ice.*" will 16:21:33 ## alter the behavior of the OMERO runtime 16:21:33 ## by configuring the Ice communicators. For a 16:21:33 ## full listing see: 16:21:33 ## 16:21:33 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:21:33 ## For more information see 16:21:33 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:21:33 ############################################# 16:21:33 16:21:33 # Disable IPv6 by setting to 0. Only needed in 16:21:33 # certain situations. 16:21:33 Ice.IPv6=1 16:21:33 16:21:33 # Glacier2Template IceSSL defaults and overrides, 16:21:33 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:21:33 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:21:33 # update the corresponding IceSSL. property. 16:21:33 omero.glacier2.IceSSL= 16:21:33 16:21:33 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:21:33 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:21:33 # Glacier2Template SSL allowed cipher suites 16:21:33 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:21:33 # Glacier2Template SSL verification requirements 16:21:33 omero.glacier2.IceSSL.VerifyPeer=0 16:21:33 # Glacier2Template SSL allowed protocols 16:21:33 omero.glacier2.IceSSL.Protocols=tls1 16:21:33 16:21:33 # Override the default set of OMERO services. 16:21:33 # For example, to run OMERO.server with Blitz and Tables only 16:21:33 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:21:33 # set this to ``master:Blitz-0,Tables-0``. 16:21:33 # Also use this to distribute OMERO services across multiple nodes, 16:21:33 # for example: 16:21:33 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:21:33 # See 16:21:33 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:21:33 omero.server.nodedescriptors= 16:21:33 16:21:33 ############################################# 16:21:33 ## Darwin (OS X) specific defaults for templated configuration files only. 16:21:33 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:21:33 ## file. 16:21:33 ## Do not set these properties in ``omero config``, instead set the original 16:21:33 ## ``xxx.yyy`` property 16:21:33 ############################################# 16:21:33 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:21:33 16:21:33 16:21:33 16:21:33 ############################################# 16:21:33 ## Server product name for release artifacts 16:21:33 ############################################# 16:21:33 product.name=OMERO.server 16:21:33 16:21:33 ############################################# 16:21:33 ### Properties below this marker are ignored by 16:21:33 ### omero.install.config_parser.PropertyParser 16:21:33 ### END 16:21:33 16:21:33 ############################################# 16:21:33 ## Library versions 16:21:33 ############################################# 16:21:33 ## 16:21:33 versions.findbugs=1.2.1 16:21:33 versions.ice36=3.6.5 16:21:33 versions.ice36_lib=36 16:21:33 ## internal 16:21:33 versions.omeroshares36=3.6.3 16:21:33 versions.omeromock36=3.6.3 16:21:33 versions.icedb36=3.6.3 16:21:33 versions.ipython=1.2.1 16:21:33 16:21:33 versions.janino=2.5.10 16:21:33 16:21:33 versions.reportng=1.1.1 16:21:33 16:21:33 versions.testng=7.5 16:21:33 versions.velocity=1.4 16:21:33 16:21:33 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:21:33 versions.omero-scripts-url=${versions.omero-pypi} 16:21:33 16:21:33 ### 16:21:33 ### Appended Values 16:21:33 ### 16:21:33 16:21:33 ## Internal dependencies' 16:21:33 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 16:21:33 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 16:21:33 + echo versions.scripts-prefix= 16:21:33 + echo versions.scripts=merge_ci 16:21:33 + cat /home/omero/workspace/OMERO-push/version.properties 16:21:33 + git commit -a -m 'Add version.properties to etc/omero.properties' 16:21:33 [detached HEAD 603c41035d] Add version.properties to etc/omero.properties 16:21:33 1 file changed, 47 insertions(+), 7 deletions(-) 16:21:33 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 16:21:35 To github.com:snoopycrimecop/openmicroscopy.git 16:21:35 + 543906beb3...603c41035d HEAD -> merge_ci (forced update) 16:21:35 Finished: SUCCESS