16:03:12 Started by user devspace 16:03:12 Running as SYSTEM 16:03:12 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 16:03:12 The recommended git tool is: NONE 16:03:12 No credentials specified 16:03:12 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 16:03:12 Fetching changes from the remote Git repository 16:03:13 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 16:03:13 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 16:03:13 > git --version # timeout=10 16:03:13 > git --version # 'git version 2.52.0' 16:03:13 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 16:03:17 > git rev-parse origin/develop^{commit} # timeout=10 16:03:17 Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop) 16:03:17 > git config core.sparsecheckout # timeout=10 16:03:17 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30 16:03:22 Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test" 16:03:22 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10 16:03:22 Cleaning workspace 16:03:22 > git rev-parse --verify HEAD # timeout=10 16:03:22 Resetting working tree 16:03:22 > git reset --hard # timeout=10 16:03:22 > git clean -fdx # timeout=10 16:03:23 Copied 1 artifact from "OMERO-python-superbuild-build" build number 14 16:03:23 [OMERO-push] $ /bin/bash -xe /tmp/jenkins8538475828538173365.sh 16:03:23 + python3.11 -mvenv venv 16:03:25 + source /home/omero/workspace/OMERO-push/venv/bin/activate 16:03:25 ++ deactivate nondestructive 16:03:25 ++ '[' -n '' ']' 16:03:25 ++ '[' -n '' ']' 16:03:25 ++ hash -r 16:03:25 ++ '[' -n '' ']' 16:03:25 ++ unset VIRTUAL_ENV 16:03:25 ++ unset VIRTUAL_ENV_PROMPT 16:03:25 ++ '[' '!' nondestructive = nondestructive ']' 16:03:25 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 16:03:25 ++ export VIRTUAL_ENV 16:03:25 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:03:25 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:03:25 ++ export PATH 16:03:25 ++ '[' -n '' ']' 16:03:25 ++ '[' -z '' ']' 16:03:25 ++ _OLD_VIRTUAL_PS1= 16:03:25 ++ PS1='(venv) ' 16:03:25 ++ export PS1 16:03:25 ++ VIRTUAL_ENV_PROMPT='(venv) ' 16:03:25 ++ export VIRTUAL_ENV_PROMPT 16:03:25 ++ hash -r 16:03:25 + pip install -U pip 16:03:28 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2) 16:03:28 + pip install -U scc 16:03:29 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 16:03:29 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 16:03:29 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 16:03:29 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 16:03:29 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 16:03:29 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 16:03:29 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 16:03:29 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 16:03:29 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 16:03:29 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 16:03:29 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 16:03:29 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 16:03:29 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 16:03:29 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 16:03:29 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 16:03:29 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 16:03:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 16:03:29 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 16:03:29 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 16:03:29 + test -e src 16:03:29 + cd src 16:03:29 ++ git config github.user 16:03:29 + user=snoopycrimecop 16:03:29 + scc merge develop --no-ask --reset --shallow -S success-only 16:03:37 2026-07-21 16:03:37,195 [ scc.merge] INFO Merging Pull Request(s) based on develop 16:03:37 2026-07-21 16:03:37,195 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 16:03:37 2026-07-21 16:03:37,195 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 16:03:37 2026-07-21 16:03:37,196 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 16:03:37 2026-07-21 16:03:37,196 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 16:03:37 2026-07-21 16:03:37,196 [ scc.merge] INFO Excluding Pull Request(s) without successful status 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO Repository: ome/openmicroscopy 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO Excluded PRs: 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure) 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (label: exclude) 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment) 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO Already up to date. 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO Merged PRs: 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6465 pwalczysko 'Fix also the test_remove__pre_fs_pyramids' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6466 pwalczysko 'Fix test_remove_pyramids_check_thumbs NFS' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6467 pwalczysko 'Test thumbs' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO - PR 6469 pwalczysko 'Fix test_render_image_region_tile_params_big_image' 16:04:21 2026-07-21 16:04:21,428 [ scc.merge] INFO 16:04:21 + cp etc/omero.properties etc/omero.properties.bak 16:04:21 + rm etc/omero.properties 16:04:21 + touch etc/omero.properties 16:04:21 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 16:04:21 + ne=249 16:04:21 ++ sed -n 1,249p etc/omero.properties.bak 16:04:21 + line='## 16:04:21 ## omero.properties 16:04:21 ## ---------------- 16:04:21 ## 16:04:21 ## DO NOT EDIT! 16:04:21 ## 16:04:21 ## 16:04:21 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:04:21 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:04:21 ## at compile time! 16:04:21 ## 16:04:21 ## For an overview of these properties, see 16:04:21 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:04:21 ## 16:04:21 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:04:21 16:04:21 # Comma separated list of Ice transports available to clients. The default 16:04:21 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:04:21 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:04:21 # will prevent all non-encrypted connections to the OMERO server. 16:04:21 # 16:04:21 # Additionally, there are two experimental values for using websockets: 16:04:21 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:04:21 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:04:21 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:04:21 # 16:04:21 # Note: When using websockets behind a web server like nginx, additional 16:04:21 # configuration may be needed. 16:04:21 omero.client.icetransports=ssl,tcp 16:04:21 16:04:21 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:04:21 # server 16:04:21 omero.ports.prefix= 16:04:21 16:04:21 # The Glacier2 SSL port number to use 16:04:21 omero.ports.ssl=4064 16:04:21 16:04:21 # The Glacier2 TCP port number to use (unencrypted) 16:04:21 omero.ports.tcp=4063 16:04:21 16:04:21 # The Glacier2 WSS port number to use 16:04:21 omero.ports.wss=4066 16:04:21 16:04:21 # The Glacier2 WS port number to use (unencrypted) 16:04:21 omero.ports.ws=4065 16:04:21 16:04:21 # The IceGrid registry port number to use 16:04:21 omero.ports.registry=4061 16:04:21 16:04:21 ############################################# 16:04:21 ## JVM configuration 16:04:21 ## 16:04:21 ## Note: changes to the omero.jvmcfg properties 16:04:21 ## will *not* be reflected in OMERO.server 16:04:21 ## since they are defined in OMERO.py. 16:04:21 ############################################# 16:04:21 ## (For documentation only) 16:04:21 # Memory strategy which will be used by default. 16:04:21 # Options include: percent, manual 16:04:21 omero.jvmcfg.strategy=percent 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Explicit value for the `-Xmx` argument, e.g. 16:04:21 # "1g" 16:04:21 omero.jvmcfg.heap_size= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Explicit value for the MaxPermSize argument 16:04:21 # to the JVM, e.g. "500M". Ignored for Java8+ 16:04:21 omero.jvmcfg.perm_gen= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Toggles on or off heap dumps on OOMs. Default is "off". 16:04:21 # The special value "tmp" will create the heap dumps in 16:04:21 # your temp directory. 16:04:21 omero.jvmcfg.heap_dump= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Used only by the percent strategy. An integer between 0 16:04:21 # and 100 which is the percent of active memory that will 16:04:21 # be used by the service. 16:04:21 omero.jvmcfg.percent= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Contains other parameters which should be passed to the 16:04:21 # JVM. The value of "append" is treated as if it were on 16:04:21 # the command line so will be separated on whitespace. 16:04:21 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:04:21 # results in two new arguments. 16:04:21 # Note that when using `config set` from the command line 16:04:21 # one may need to give a prior `--` option to prevent a value 16:04:21 # starting with `-` from already being parsed as an option, 16:04:21 # and values may need quoting to prevent whitespace or other 16:04:21 # significant characters from being interpreted prematurely. 16:04:21 16:04:21 omero.jvmcfg.append= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Manual override of the total system memory that 16:04:21 # OMERO will *think* is present on the local OS (MB). 16:04:21 # If unset, an attempt will be made to detect the actual 16:04:21 # amount: first by using the Python library `psutil` and 16:04:21 # if that is not installed, by running a Java tool. If 16:04:21 # neither works, 4.0GB is assumed. 16:04:21 omero.jvmcfg.system_memory= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Suggestion for strategies as to the minimum memory 16:04:21 # that they will use for calculating JVM settings (MB). 16:04:21 omero.jvmcfg.min_system_memory=3414 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Suggestion for strategies as to the maximum memory 16:04:21 # that they will use for calculating JVM settings (MB). 16:04:21 omero.jvmcfg.max_system_memory=48000 16:04:21 16:04:21 16:04:21 ############################################# 16:04:21 ## Logging properties 16:04:21 ## 16:04:21 ## Note: changes to the default omero.logging values in 16:04:21 ## this file will *not* be reflected in OMERO.server 16:04:21 ## since they are defined in OMERO.py 16:04:21 ############################################# 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Relative server directory where the log files should be stored. 16:04:21 omero.logging.directory=var/log/ 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Whether the server log files should be rotated at a certain time 16:04:21 # interval. If true, log files will be rolled over at midnight. 16:04:21 # Otherwise, log files will be rolled over at a predetermined size, 16:04:21 # see omero.logging.logsize for more information. 16:04:21 omero.logging.timedlog=false 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # If omero.logging.timedlog is false or unset, specifies the 16:04:21 # maximum size of the server log files in bytes above which a 16:04:21 # new log file should be created. 16:04:21 omero.logging.logsize=5000000 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # If omero.logging.timedlog is false or unset, specifies the 16:04:21 # number of old server log files that should be kept. Old log 16:04:21 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 16:04:21 omero.logging.lognum=9 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Specifies the threshold for the Python servers log files. Logging messages 16:04:21 # which are less severe than this value will be ignored. For a list of 16:04:21 # available values, see https://docs.python.org/3/library/logging.html#levels. 16:04:21 omero.logging.level=20 16:04:21 16:04:21 ############################################# 16:04:21 ## Ice overrides 16:04:21 ## 16:04:21 ## Though not used directly by OMERO, a number 16:04:21 ## of properties prefixed with "Ice.*" will 16:04:21 ## alter the behavior of the OMERO runtime 16:04:21 ## by configuring the Ice communicators. For a 16:04:21 ## full listing see: 16:04:21 ## 16:04:21 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:04:21 ## For more information see 16:04:21 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:04:21 ############################################# 16:04:21 16:04:21 # Disable IPv6 by setting to 0. Only needed in 16:04:21 # certain situations. 16:04:21 Ice.IPv6=1 16:04:21 16:04:21 # Glacier2Template IceSSL defaults and overrides, 16:04:21 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:04:21 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:04:21 # update the corresponding IceSSL. property. 16:04:21 omero.glacier2.IceSSL= 16:04:21 16:04:21 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:04:21 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:04:21 # Glacier2Template SSL allowed cipher suites 16:04:21 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:04:21 # Glacier2Template SSL verification requirements 16:04:21 omero.glacier2.IceSSL.VerifyPeer=0 16:04:21 # Glacier2Template SSL allowed protocols 16:04:21 omero.glacier2.IceSSL.Protocols=tls1 16:04:21 16:04:21 # Override the default set of OMERO services. 16:04:21 # For example, to run OMERO.server with Blitz and Tables only 16:04:21 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:04:21 # set this to ``master:Blitz-0,Tables-0``. 16:04:21 # Also use this to distribute OMERO services across multiple nodes, 16:04:21 # for example: 16:04:21 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:04:21 # See 16:04:21 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:04:21 omero.server.nodedescriptors= 16:04:21 16:04:21 ############################################# 16:04:21 ## Darwin (OS X) specific defaults for templated configuration files only. 16:04:21 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:04:21 ## file. 16:04:21 ## Do not set these properties in ``omero config``, instead set the original 16:04:21 ## ``xxx.yyy`` property 16:04:21 ############################################# 16:04:21 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Name of the Python module to use when starting the Tables service 16:04:21 omero.tables.module=runTables 16:04:21 16:04:21 ############################################# 16:04:21 ## Server product name for release artifacts 16:04:21 ############################################# 16:04:21 product.name=OMERO.server 16:04:21 16:04:21 ############################################# 16:04:21 ### Properties below this marker are ignored by 16:04:21 ### omero.install.config_parser.PropertyParser 16:04:21 ### END 16:04:21 16:04:21 ############################################# 16:04:21 ## Library versions 16:04:21 ############################################# 16:04:21 ## 16:04:21 versions.findbugs=1.2.1 16:04:21 versions.ice36=3.6.5 16:04:21 versions.ice36_lib=36 16:04:21 ## internal 16:04:21 versions.omeroshares36=3.6.3 16:04:21 versions.omeromock36=3.6.3 16:04:21 versions.icedb36=3.6.3 16:04:21 versions.ipython=1.2.1 16:04:21 16:04:21 versions.janino=2.5.10 16:04:21 16:04:21 versions.reportng=1.1.1 16:04:21 16:04:21 versions.testng=7.5 16:04:21 versions.velocity=1.4 16:04:21 16:04:21 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:04:21 versions.omero-scripts-url=${versions.omero-pypi} 16:04:21 16:04:21 ### 16:04:21 ### Appended Values 16:04:21 ### 16:04:21 16:04:21 ## Internal dependencies' 16:04:21 + echo '## 16:04:21 ## omero.properties 16:04:21 ## ---------------- 16:04:21 ## 16:04:21 ## DO NOT EDIT! 16:04:21 ## 16:04:21 ## 16:04:21 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:04:21 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:04:21 ## at compile time! 16:04:21 ## 16:04:21 ## For an overview of these properties, see 16:04:21 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:04:21 ## 16:04:21 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:04:21 16:04:21 # Comma separated list of Ice transports available to clients. The default 16:04:21 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:04:21 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:04:21 # will prevent all non-encrypted connections to the OMERO server. 16:04:21 # 16:04:21 # Additionally, there are two experimental values for using websockets: 16:04:21 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:04:21 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:04:21 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:04:21 # 16:04:21 # Note: When using websockets behind a web server like nginx, additional 16:04:21 # configuration may be needed. 16:04:21 omero.client.icetransports=ssl,tcp 16:04:21 16:04:21 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:04:21 # server 16:04:21 omero.ports.prefix= 16:04:21 16:04:21 # The Glacier2 SSL port number to use 16:04:21 omero.ports.ssl=4064 16:04:21 16:04:21 # The Glacier2 TCP port number to use (unencrypted) 16:04:21 omero.ports.tcp=4063 16:04:21 16:04:21 # The Glacier2 WSS port number to use 16:04:21 omero.ports.wss=4066 16:04:21 16:04:21 # The Glacier2 WS port number to use (unencrypted) 16:04:21 omero.ports.ws=4065 16:04:21 16:04:21 # The IceGrid registry port number to use 16:04:21 omero.ports.registry=4061 16:04:21 16:04:21 ############################################# 16:04:21 ## JVM configuration 16:04:21 ## 16:04:21 ## Note: changes to the omero.jvmcfg properties 16:04:21 ## will *not* be reflected in OMERO.server 16:04:21 ## since they are defined in OMERO.py. 16:04:21 ############################################# 16:04:21 ## (For documentation only) 16:04:21 # Memory strategy which will be used by default. 16:04:21 # Options include: percent, manual 16:04:21 omero.jvmcfg.strategy=percent 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Explicit value for the `-Xmx` argument, e.g. 16:04:21 # "1g" 16:04:21 omero.jvmcfg.heap_size= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Explicit value for the MaxPermSize argument 16:04:21 # to the JVM, e.g. "500M". Ignored for Java8+ 16:04:21 omero.jvmcfg.perm_gen= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Toggles on or off heap dumps on OOMs. Default is "off". 16:04:21 # The special value "tmp" will create the heap dumps in 16:04:21 # your temp directory. 16:04:21 omero.jvmcfg.heap_dump= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Used only by the percent strategy. An integer between 0 16:04:21 # and 100 which is the percent of active memory that will 16:04:21 # be used by the service. 16:04:21 omero.jvmcfg.percent= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Contains other parameters which should be passed to the 16:04:21 # JVM. The value of "append" is treated as if it were on 16:04:21 # the command line so will be separated on whitespace. 16:04:21 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:04:21 # results in two new arguments. 16:04:21 # Note that when using `config set` from the command line 16:04:21 # one may need to give a prior `--` option to prevent a value 16:04:21 # starting with `-` from already being parsed as an option, 16:04:21 # and values may need quoting to prevent whitespace or other 16:04:21 # significant characters from being interpreted prematurely. 16:04:21 16:04:21 omero.jvmcfg.append= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Manual override of the total system memory that 16:04:21 # OMERO will *think* is present on the local OS (MB). 16:04:21 # If unset, an attempt will be made to detect the actual 16:04:21 # amount: first by using the Python library `psutil` and 16:04:21 # if that is not installed, by running a Java tool. If 16:04:21 # neither works, 4.0GB is assumed. 16:04:21 omero.jvmcfg.system_memory= 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Suggestion for strategies as to the minimum memory 16:04:21 # that they will use for calculating JVM settings (MB). 16:04:21 omero.jvmcfg.min_system_memory=3414 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Suggestion for strategies as to the maximum memory 16:04:21 # that they will use for calculating JVM settings (MB). 16:04:21 omero.jvmcfg.max_system_memory=48000 16:04:21 16:04:21 16:04:21 ############################################# 16:04:21 ## Logging properties 16:04:21 ## 16:04:21 ## Note: changes to the default omero.logging values in 16:04:21 ## this file will *not* be reflected in OMERO.server 16:04:21 ## since they are defined in OMERO.py 16:04:21 ############################################# 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Relative server directory where the log files should be stored. 16:04:21 omero.logging.directory=var/log/ 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Whether the server log files should be rotated at a certain time 16:04:21 # interval. If true, log files will be rolled over at midnight. 16:04:21 # Otherwise, log files will be rolled over at a predetermined size, 16:04:21 # see omero.logging.logsize for more information. 16:04:21 omero.logging.timedlog=false 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # If omero.logging.timedlog is false or unset, specifies the 16:04:21 # maximum size of the server log files in bytes above which a 16:04:21 # new log file should be created. 16:04:21 omero.logging.logsize=5000000 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # If omero.logging.timedlog is false or unset, specifies the 16:04:21 # number of old server log files that should be kept. Old log 16:04:21 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 16:04:21 omero.logging.lognum=9 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Specifies the threshold for the Python servers log files. Logging messages 16:04:21 # which are less severe than this value will be ignored. For a list of 16:04:21 # available values, see https://docs.python.org/3/library/logging.html#levels. 16:04:21 omero.logging.level=20 16:04:21 16:04:21 ############################################# 16:04:21 ## Ice overrides 16:04:21 ## 16:04:21 ## Though not used directly by OMERO, a number 16:04:21 ## of properties prefixed with "Ice.*" will 16:04:21 ## alter the behavior of the OMERO runtime 16:04:21 ## by configuring the Ice communicators. For a 16:04:21 ## full listing see: 16:04:21 ## 16:04:21 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:04:21 ## For more information see 16:04:21 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:04:21 ############################################# 16:04:21 16:04:21 # Disable IPv6 by setting to 0. Only needed in 16:04:21 # certain situations. 16:04:21 Ice.IPv6=1 16:04:21 16:04:21 # Glacier2Template IceSSL defaults and overrides, 16:04:21 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:04:21 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:04:21 # update the corresponding IceSSL. property. 16:04:21 omero.glacier2.IceSSL= 16:04:21 16:04:21 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:04:21 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:04:21 # Glacier2Template SSL allowed cipher suites 16:04:21 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:04:21 # Glacier2Template SSL verification requirements 16:04:21 omero.glacier2.IceSSL.VerifyPeer=0 16:04:21 # Glacier2Template SSL allowed protocols 16:04:21 omero.glacier2.IceSSL.Protocols=tls1 16:04:21 16:04:21 # Override the default set of OMERO services. 16:04:21 # For example, to run OMERO.server with Blitz and Tables only 16:04:21 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:04:21 # set this to ``master:Blitz-0,Tables-0``. 16:04:21 # Also use this to distribute OMERO services across multiple nodes, 16:04:21 # for example: 16:04:21 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:04:21 # See 16:04:21 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:04:21 omero.server.nodedescriptors= 16:04:21 16:04:21 ############################################# 16:04:21 ## Darwin (OS X) specific defaults for templated configuration files only. 16:04:21 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:04:21 ## file. 16:04:21 ## Do not set these properties in ``omero config``, instead set the original 16:04:21 ## ``xxx.yyy`` property 16:04:21 ############################################# 16:04:21 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:04:21 16:04:21 ## (For documentation only) 16:04:21 # Name of the Python module to use when starting the Tables service 16:04:21 omero.tables.module=runTables 16:04:21 16:04:21 ############################################# 16:04:21 ## Server product name for release artifacts 16:04:21 ############################################# 16:04:21 product.name=OMERO.server 16:04:21 16:04:21 ############################################# 16:04:21 ### Properties below this marker are ignored by 16:04:21 ### omero.install.config_parser.PropertyParser 16:04:21 ### END 16:04:21 16:04:21 ############################################# 16:04:21 ## Library versions 16:04:21 ############################################# 16:04:21 ## 16:04:21 versions.findbugs=1.2.1 16:04:21 versions.ice36=3.6.5 16:04:21 versions.ice36_lib=36 16:04:21 ## internal 16:04:21 versions.omeroshares36=3.6.3 16:04:21 versions.omeromock36=3.6.3 16:04:21 versions.icedb36=3.6.3 16:04:21 versions.ipython=1.2.1 16:04:21 16:04:21 versions.janino=2.5.10 16:04:21 16:04:21 versions.reportng=1.1.1 16:04:21 16:04:21 versions.testng=7.5 16:04:21 versions.velocity=1.4 16:04:21 16:04:21 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:04:21 versions.omero-scripts-url=${versions.omero-pypi} 16:04:21 16:04:21 ### 16:04:21 ### Appended Values 16:04:21 ### 16:04:21 16:04:21 ## Internal dependencies' 16:04:21 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 16:04:21 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 16:04:21 + echo versions.scripts-prefix= 16:04:21 + echo versions.scripts=merge_ci 16:04:21 + cat /home/omero/workspace/OMERO-push/version.properties 16:04:21 + git commit -a -m 'Add version.properties to etc/omero.properties' 16:04:21 [detached HEAD 8fd4dc4071] Add version.properties to etc/omero.properties 16:04:21 1 file changed, 46 insertions(+), 6 deletions(-) 16:04:21 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 16:04:25 To github.com:snoopycrimecop/openmicroscopy.git 16:04:25 + 6792b8987e...8fd4dc4071 HEAD -> merge_ci (forced update) 16:04:25 Finished: SUCCESS