16:16:27 Started by upstream project "Trigger" build number 217 16:16:27 originally caused by: 16:16:27 Started by user devspace 16:16:27 Running as SYSTEM 16:16:27 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 16:16:27 The recommended git tool is: NONE 16:16:27 No credentials specified 16:16:27 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 16:16:27 Fetching changes from the remote Git repository 16:16:27 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 16:16:27 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 16:16:27 > git --version # timeout=10 16:16:27 > git --version # 'git version 2.43.5' 16:16:27 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 16:16:29 > git rev-parse origin/develop^{commit} # timeout=10 16:16:29 Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop) 16:16:29 > git config core.sparsecheckout # timeout=10 16:16:29 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30 16:16:30 Commit message: "Merge pull request #6407 from will-moore/history_5.6.13" 16:16:30 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10 16:16:30 Cleaning workspace 16:16:30 > git rev-parse --verify HEAD # timeout=10 16:16:30 Resetting working tree 16:16:30 > git reset --hard # timeout=10 16:16:30 > git clean -fdx # timeout=10 16:16:31 Copied 1 artifact from "OMERO-python-superbuild-build" build number 179 16:16:31 [OMERO-push] $ /bin/bash -xe /tmp/jenkins6207727490356695612.sh 16:16:31 + python3 -mvenv venv 16:16:33 + source /home/omero/workspace/OMERO-push/venv/bin/activate 16:16:33 ++ deactivate nondestructive 16:16:33 ++ '[' -n '' ']' 16:16:33 ++ '[' -n '' ']' 16:16:33 ++ '[' -n /bin/bash -o -n '' ']' 16:16:33 ++ hash -r 16:16:33 ++ '[' -n '' ']' 16:16:33 ++ unset VIRTUAL_ENV 16:16:33 ++ '[' '!' nondestructive = nondestructive ']' 16:16:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 16:16:33 ++ export VIRTUAL_ENV 16:16:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:16:33 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 16:16:33 ++ export PATH 16:16:33 ++ '[' -n '' ']' 16:16:33 ++ '[' -z '' ']' 16:16:33 ++ _OLD_VIRTUAL_PS1= 16:16:33 ++ PS1='(venv) ' 16:16:33 ++ export PS1 16:16:33 ++ '[' -n /bin/bash -o -n '' ']' 16:16:33 ++ hash -r 16:16:33 + pip install -U pip 16:16:35 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2) 16:16:35 + pip install -U scc 16:16:35 Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0) 16:16:35 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) 16:16:35 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) 16:16:35 Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) 16:16:35 Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) 16:16:35 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) 16:16:35 Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) 16:16:35 Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) 16:16:35 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) 16:16:35 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) 16:16:35 Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) 16:16:35 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) 16:16:35 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) 16:16:35 Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) 16:16:35 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) 16:16:35 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) 16:16:35 Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) 16:16:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) 16:16:35 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) 16:16:35 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) 16:16:35 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) 16:16:35 Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) 16:16:35 + test -e src 16:16:35 + cd src 16:16:35 ++ git config github.user 16:16:35 + user=snoopycrimecop 16:16:35 + scc merge develop --no-ask --reset --shallow -S success-only 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Merging Pull Request(s) based on develop 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 16:16:41 2024-09-20 16:16:41,064 [ scc.merge] INFO Excluding Pull Request(s) without successful status 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO Repository: ome/openmicroscopy 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO Excluded PRs: 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO Already up to date. 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO Merged PRs: 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6309 jburel 'add try block' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API' 16:17:11 2024-09-20 16:17:11,015 [ scc.merge] INFO 16:17:11 + cp etc/omero.properties etc/omero.properties.bak 16:17:11 + rm etc/omero.properties 16:17:11 + touch etc/omero.properties 16:17:11 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 16:17:11 + ne=249 16:17:11 ++ sed -n 1,249p etc/omero.properties.bak 16:17:11 + line='## 16:17:11 ## omero.properties 16:17:11 ## ---------------- 16:17:11 ## 16:17:11 ## DO NOT EDIT! 16:17:11 ## 16:17:11 ## 16:17:11 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:17:11 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:17:11 ## at compile time! 16:17:11 ## 16:17:11 ## For an overview of these properties, see 16:17:11 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:17:11 ## 16:17:11 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:17:11 16:17:11 # Comma separated list of Ice transports available to clients. The default 16:17:11 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:17:11 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:17:11 # will prevent all non-encrypted connections to the OMERO server. 16:17:11 # 16:17:11 # Additionally, there are two experimental values for using websockets: 16:17:11 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:17:11 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:17:11 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:17:11 # 16:17:11 # Note: When using websockets behind a web server like nginx, additional 16:17:11 # configuration may be needed. 16:17:11 omero.client.icetransports=ssl,tcp 16:17:11 16:17:11 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:17:11 # server 16:17:11 omero.ports.prefix= 16:17:11 16:17:11 # The Glacier2 SSL port number to use 16:17:11 omero.ports.ssl=4064 16:17:11 16:17:11 # The Glacier2 TCP port number to use (unencrypted) 16:17:11 omero.ports.tcp=4063 16:17:11 16:17:11 # The Glacier2 WSS port number to use 16:17:11 omero.ports.wss=4066 16:17:11 16:17:11 # The Glacier2 WS port number to use (unencrypted) 16:17:11 omero.ports.ws=4065 16:17:11 16:17:11 # The IceGrid registry port number to use 16:17:11 omero.ports.registry=4061 16:17:11 16:17:11 ############################################# 16:17:11 ## JVM configuration 16:17:11 ## 16:17:11 ## Note: changes to the omero.jvmcfg properties 16:17:11 ## will *not* be reflected in OMERO.server 16:17:11 ## since they are defined in OMERO.py. 16:17:11 ############################################# 16:17:11 ## (For documentation only) 16:17:11 # Memory strategy which will be used by default. 16:17:11 # Options include: percent, manual 16:17:11 omero.jvmcfg.strategy=percent 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Explicit value for the `-Xmx` argument, e.g. 16:17:11 # "1g" 16:17:11 omero.jvmcfg.heap_size= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Explicit value for the MaxPermSize argument 16:17:11 # to the JVM, e.g. "500M". Ignored for Java8+ 16:17:11 omero.jvmcfg.perm_gen= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Toggles on or off heap dumps on OOMs. Default is "off". 16:17:11 # The special value "tmp" will create the heap dumps in 16:17:11 # your temp directory. 16:17:11 omero.jvmcfg.heap_dump= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Used only by the percent strategy. An integer between 0 16:17:11 # and 100 which is the percent of active memory that will 16:17:11 # be used by the service. 16:17:11 omero.jvmcfg.percent= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Contains other parameters which should be passed to the 16:17:11 # JVM. The value of "append" is treated as if it were on 16:17:11 # the command line so will be separated on whitespace. 16:17:11 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:17:11 # results in two new arguments. 16:17:11 # Note that when using `config set` from the command line 16:17:11 # one may need to give a prior `--` option to prevent a value 16:17:11 # starting with `-` from already being parsed as an option, 16:17:11 # and values may need quoting to prevent whitespace or other 16:17:11 # significant characters from being interpreted prematurely. 16:17:11 16:17:11 omero.jvmcfg.append= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Manual override of the total system memory that 16:17:11 # OMERO will *think* is present on the local OS (MB). 16:17:11 # If unset, an attempt will be made to detect the actual 16:17:11 # amount: first by using the Python library `psutil` and 16:17:11 # if that is not installed, by running a Java tool. If 16:17:11 # neither works, 4.0GB is assumed. 16:17:11 omero.jvmcfg.system_memory= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Suggestion for strategies as to the minimum memory 16:17:11 # that they will use for calculating JVM settings (MB). 16:17:11 omero.jvmcfg.min_system_memory=3414 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Suggestion for strategies as to the maximum memory 16:17:11 # that they will use for calculating JVM settings (MB). 16:17:11 omero.jvmcfg.max_system_memory=48000 16:17:11 16:17:11 16:17:11 ############################################# 16:17:11 ## Logging properties 16:17:11 ## 16:17:11 ## Note: changes to the default omero.logging values in 16:17:11 ## this file will *not* be reflected in OMERO.server 16:17:11 ## since they are defined in OMERO.py 16:17:11 ############################################# 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Relative server directory where the log files should be stored. 16:17:11 omero.logging.directory=var/log/ 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Whether the server log files should be rotated at a certain time 16:17:11 # interval. If true, log files will be rolled over at midnight. 16:17:11 # Otherwise, log files will be rolled over at a predetermined size, 16:17:11 # see omero.logging.logsize for more information. 16:17:11 omero.logging.timedlog=false 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # If omero.logging.timedlog is false or unset, specifies the 16:17:11 # maximum size of the server log files in bytes above which a 16:17:11 # new log file should be created. 16:17:11 omero.logging.logsize=5000000 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # If omero.logging.timedlog is false or unset, specifies the 16:17:11 # number of old server log files that should be kept. Old log 16:17:11 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 16:17:11 omero.logging.lognum=9 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Specifies the threshold for the Python servers log files. Logging messages 16:17:11 # which are less severe than this value will be ignored. For a list of 16:17:11 # available values, see https://docs.python.org/3/library/logging.html#levels. 16:17:11 omero.logging.level=20 16:17:11 16:17:11 ############################################# 16:17:11 ## Ice overrides 16:17:11 ## 16:17:11 ## Though not used directly by OMERO, a number 16:17:11 ## of properties prefixed with "Ice.*" will 16:17:11 ## alter the behavior of the OMERO runtime 16:17:11 ## by configuring the Ice communicators. For a 16:17:11 ## full listing see: 16:17:11 ## 16:17:11 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:17:11 ## For more information see 16:17:11 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:17:11 ############################################# 16:17:11 16:17:11 # Disable IPv6 by setting to 0. Only needed in 16:17:11 # certain situations. 16:17:11 Ice.IPv6=1 16:17:11 16:17:11 # Glacier2Template IceSSL defaults and overrides, 16:17:11 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:17:11 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:17:11 # update the corresponding IceSSL. property. 16:17:11 omero.glacier2.IceSSL= 16:17:11 16:17:11 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:17:11 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:17:11 # Glacier2Template SSL allowed cipher suites 16:17:11 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:17:11 # Glacier2Template SSL verification requirements 16:17:11 omero.glacier2.IceSSL.VerifyPeer=0 16:17:11 # Glacier2Template SSL allowed protocols 16:17:11 omero.glacier2.IceSSL.Protocols=tls1 16:17:11 16:17:11 # Override the default set of OMERO services. 16:17:11 # For example, to run OMERO.server with Blitz and Tables only 16:17:11 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:17:11 # set this to ``master:Blitz-0,Tables-0``. 16:17:11 # Also use this to distribute OMERO services across multiple nodes, 16:17:11 # for example: 16:17:11 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:17:11 # See 16:17:11 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:17:11 omero.server.nodedescriptors= 16:17:11 16:17:11 ############################################# 16:17:11 ## Darwin (OS X) specific defaults for templated configuration files only. 16:17:11 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:17:11 ## file. 16:17:11 ## Do not set these properties in ``omero config``, instead set the original 16:17:11 ## ``xxx.yyy`` property 16:17:11 ############################################# 16:17:11 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Name of the Python module to use when starting the Tables service 16:17:11 omero.tables.module=runTables 16:17:11 16:17:11 ############################################# 16:17:11 ## Server product name for release artifacts 16:17:11 ############################################# 16:17:11 product.name=OMERO.server 16:17:11 16:17:11 ############################################# 16:17:11 ### Properties below this marker are ignored by 16:17:11 ### omero.install.config_parser.PropertyParser 16:17:11 ### END 16:17:11 16:17:11 ############################################# 16:17:11 ## Library versions 16:17:11 ############################################# 16:17:11 ## 16:17:11 versions.findbugs=1.2.1 16:17:11 versions.ice36=3.6.5 16:17:11 versions.ice36_lib=36 16:17:11 ## internal 16:17:11 versions.omeroshares36=3.6.3 16:17:11 versions.omeromock36=3.6.3 16:17:11 versions.icedb36=3.6.3 16:17:11 versions.ipython=1.2.1 16:17:11 16:17:11 versions.janino=2.5.10 16:17:11 16:17:11 versions.reportng=1.1.1 16:17:11 16:17:11 versions.testng=7.5 16:17:11 versions.velocity=1.4 16:17:11 16:17:11 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:17:11 versions.omero-scripts-url=${versions.omero-pypi} 16:17:11 16:17:11 ### 16:17:11 ### Appended Values 16:17:11 ### 16:17:11 16:17:11 ## Internal dependencies' 16:17:11 + echo '## 16:17:11 ## omero.properties 16:17:11 ## ---------------- 16:17:11 ## 16:17:11 ## DO NOT EDIT! 16:17:11 ## 16:17:11 ## 16:17:11 ## Any of these properties can be altered by using `omero config`. MODIFYING 16:17:11 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 16:17:11 ## at compile time! 16:17:11 ## 16:17:11 ## For an overview of these properties, see 16:17:11 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 16:17:11 ## 16:17:11 ## Properties marked with "DEVELOPMENT" should not be used in production. 16:17:11 16:17:11 # Comma separated list of Ice transports available to clients. The default 16:17:11 # value ("ssl,tcp") instructs Ice to open the ports specified by the 16:17:11 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 16:17:11 # will prevent all non-encrypted connections to the OMERO server. 16:17:11 # 16:17:11 # Additionally, there are two experimental values for using websockets: 16:17:11 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 16:17:11 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 16:17:11 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 16:17:11 # 16:17:11 # Note: When using websockets behind a web server like nginx, additional 16:17:11 # configuration may be needed. 16:17:11 omero.client.icetransports=ssl,tcp 16:17:11 16:17:11 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 16:17:11 # server 16:17:11 omero.ports.prefix= 16:17:11 16:17:11 # The Glacier2 SSL port number to use 16:17:11 omero.ports.ssl=4064 16:17:11 16:17:11 # The Glacier2 TCP port number to use (unencrypted) 16:17:11 omero.ports.tcp=4063 16:17:11 16:17:11 # The Glacier2 WSS port number to use 16:17:11 omero.ports.wss=4066 16:17:11 16:17:11 # The Glacier2 WS port number to use (unencrypted) 16:17:11 omero.ports.ws=4065 16:17:11 16:17:11 # The IceGrid registry port number to use 16:17:11 omero.ports.registry=4061 16:17:11 16:17:11 ############################################# 16:17:11 ## JVM configuration 16:17:11 ## 16:17:11 ## Note: changes to the omero.jvmcfg properties 16:17:11 ## will *not* be reflected in OMERO.server 16:17:11 ## since they are defined in OMERO.py. 16:17:11 ############################################# 16:17:11 ## (For documentation only) 16:17:11 # Memory strategy which will be used by default. 16:17:11 # Options include: percent, manual 16:17:11 omero.jvmcfg.strategy=percent 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Explicit value for the `-Xmx` argument, e.g. 16:17:11 # "1g" 16:17:11 omero.jvmcfg.heap_size= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Explicit value for the MaxPermSize argument 16:17:11 # to the JVM, e.g. "500M". Ignored for Java8+ 16:17:11 omero.jvmcfg.perm_gen= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Toggles on or off heap dumps on OOMs. Default is "off". 16:17:11 # The special value "tmp" will create the heap dumps in 16:17:11 # your temp directory. 16:17:11 omero.jvmcfg.heap_dump= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Used only by the percent strategy. An integer between 0 16:17:11 # and 100 which is the percent of active memory that will 16:17:11 # be used by the service. 16:17:11 omero.jvmcfg.percent= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Contains other parameters which should be passed to the 16:17:11 # JVM. The value of "append" is treated as if it were on 16:17:11 # the command line so will be separated on whitespace. 16:17:11 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 16:17:11 # results in two new arguments. 16:17:11 # Note that when using `config set` from the command line 16:17:11 # one may need to give a prior `--` option to prevent a value 16:17:11 # starting with `-` from already being parsed as an option, 16:17:11 # and values may need quoting to prevent whitespace or other 16:17:11 # significant characters from being interpreted prematurely. 16:17:11 16:17:11 omero.jvmcfg.append= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Manual override of the total system memory that 16:17:11 # OMERO will *think* is present on the local OS (MB). 16:17:11 # If unset, an attempt will be made to detect the actual 16:17:11 # amount: first by using the Python library `psutil` and 16:17:11 # if that is not installed, by running a Java tool. If 16:17:11 # neither works, 4.0GB is assumed. 16:17:11 omero.jvmcfg.system_memory= 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Suggestion for strategies as to the minimum memory 16:17:11 # that they will use for calculating JVM settings (MB). 16:17:11 omero.jvmcfg.min_system_memory=3414 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Suggestion for strategies as to the maximum memory 16:17:11 # that they will use for calculating JVM settings (MB). 16:17:11 omero.jvmcfg.max_system_memory=48000 16:17:11 16:17:11 16:17:11 ############################################# 16:17:11 ## Logging properties 16:17:11 ## 16:17:11 ## Note: changes to the default omero.logging values in 16:17:11 ## this file will *not* be reflected in OMERO.server 16:17:11 ## since they are defined in OMERO.py 16:17:11 ############################################# 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Relative server directory where the log files should be stored. 16:17:11 omero.logging.directory=var/log/ 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Whether the server log files should be rotated at a certain time 16:17:11 # interval. If true, log files will be rolled over at midnight. 16:17:11 # Otherwise, log files will be rolled over at a predetermined size, 16:17:11 # see omero.logging.logsize for more information. 16:17:11 omero.logging.timedlog=false 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # If omero.logging.timedlog is false or unset, specifies the 16:17:11 # maximum size of the server log files in bytes above which a 16:17:11 # new log file should be created. 16:17:11 omero.logging.logsize=5000000 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # If omero.logging.timedlog is false or unset, specifies the 16:17:11 # number of old server log files that should be kept. Old log 16:17:11 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 16:17:11 omero.logging.lognum=9 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Specifies the threshold for the Python servers log files. Logging messages 16:17:11 # which are less severe than this value will be ignored. For a list of 16:17:11 # available values, see https://docs.python.org/3/library/logging.html#levels. 16:17:11 omero.logging.level=20 16:17:11 16:17:11 ############################################# 16:17:11 ## Ice overrides 16:17:11 ## 16:17:11 ## Though not used directly by OMERO, a number 16:17:11 ## of properties prefixed with "Ice.*" will 16:17:11 ## alter the behavior of the OMERO runtime 16:17:11 ## by configuring the Ice communicators. For a 16:17:11 ## full listing see: 16:17:11 ## 16:17:11 ## http://doc.zeroc.com/display/Ice/Property+Reference 16:17:11 ## For more information see 16:17:11 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 16:17:11 ############################################# 16:17:11 16:17:11 # Disable IPv6 by setting to 0. Only needed in 16:17:11 # certain situations. 16:17:11 Ice.IPv6=1 16:17:11 16:17:11 # Glacier2Template IceSSL defaults and overrides, 16:17:11 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 16:17:11 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 16:17:11 # update the corresponding IceSSL. property. 16:17:11 omero.glacier2.IceSSL= 16:17:11 16:17:11 # Glacier2Template SSL maximum allowed protocol (mac bug) 16:17:11 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 16:17:11 # Glacier2Template SSL allowed cipher suites 16:17:11 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 16:17:11 # Glacier2Template SSL verification requirements 16:17:11 omero.glacier2.IceSSL.VerifyPeer=0 16:17:11 # Glacier2Template SSL allowed protocols 16:17:11 omero.glacier2.IceSSL.Protocols=tls1 16:17:11 16:17:11 # Override the default set of OMERO services. 16:17:11 # For example, to run OMERO.server with Blitz and Tables only 16:17:11 # (i.e. disable Processor, DropBox, Indexer, PixelData) 16:17:11 # set this to ``master:Blitz-0,Tables-0``. 16:17:11 # Also use this to distribute OMERO services across multiple nodes, 16:17:11 # for example: 16:17:11 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 16:17:11 # See 16:17:11 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 16:17:11 omero.server.nodedescriptors= 16:17:11 16:17:11 ############################################# 16:17:11 ## Darwin (OS X) specific defaults for templated configuration files only. 16:17:11 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 16:17:11 ## file. 16:17:11 ## Do not set these properties in ``omero config``, instead set the original 16:17:11 ## ``xxx.yyy`` property 16:17:11 ############################################# 16:17:11 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 16:17:11 16:17:11 ## (For documentation only) 16:17:11 # Name of the Python module to use when starting the Tables service 16:17:11 omero.tables.module=runTables 16:17:11 16:17:11 ############################################# 16:17:11 ## Server product name for release artifacts 16:17:11 ############################################# 16:17:11 product.name=OMERO.server 16:17:11 16:17:11 ############################################# 16:17:11 ### Properties below this marker are ignored by 16:17:11 ### omero.install.config_parser.PropertyParser 16:17:11 ### END 16:17:11 16:17:11 ############################################# 16:17:11 ## Library versions 16:17:11 ############################################# 16:17:11 ## 16:17:11 versions.findbugs=1.2.1 16:17:11 versions.ice36=3.6.5 16:17:11 versions.ice36_lib=36 16:17:11 ## internal 16:17:11 versions.omeroshares36=3.6.3 16:17:11 versions.omeromock36=3.6.3 16:17:11 versions.icedb36=3.6.3 16:17:11 versions.ipython=1.2.1 16:17:11 16:17:11 versions.janino=2.5.10 16:17:11 16:17:11 versions.reportng=1.1.1 16:17:11 16:17:11 versions.testng=7.5 16:17:11 versions.velocity=1.4 16:17:11 16:17:11 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 16:17:11 versions.omero-scripts-url=${versions.omero-pypi} 16:17:11 16:17:11 ### 16:17:11 ### Appended Values 16:17:11 ### 16:17:11 16:17:11 ## Internal dependencies' 16:17:11 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 16:17:11 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 16:17:11 + echo versions.scripts-prefix= 16:17:11 + echo versions.scripts=merge_ci 16:17:11 + cat /home/omero/workspace/OMERO-push/version.properties 16:17:11 + git commit -a -m 'Add version.properties to etc/omero.properties' 16:17:11 [detached HEAD 9780907658] Add version.properties to etc/omero.properties 16:17:11 1 file changed, 47 insertions(+), 7 deletions(-) 16:17:11 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 16:17:12 To github.com:snoopycrimecop/openmicroscopy.git 16:17:12 + 77df235826...9780907658 HEAD -> merge_ci (forced update) 16:17:12 Finished: SUCCESS