07:07:17 Started by upstream project "Trigger" build number 51 07:07:17 originally caused by: 07:07:17 Started by user devspace 07:07:17 Restarted from build #50, stage OMERO Distribution 07:07:17 Running as SYSTEM 07:07:17 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 07:07:17 The recommended git tool is: NONE 07:07:17 No credentials specified 07:07:17 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 07:07:17 Fetching changes from the remote Git repository 07:07:17 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 07:07:17 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 07:07:17 > git --version # timeout=10 07:07:17 > git --version # 'git version 2.47.3' 07:07:17 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 07:07:18 > git rev-parse origin/develop^{commit} # timeout=10 07:07:18 Checking out Revision 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 (origin/develop) 07:07:18 > git config core.sparsecheckout # timeout=10 07:07:18 > git checkout -f 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=30 07:07:18 Commit message: "Merge pull request #6441 from sbesson/tmpdir_var_tmp" 07:07:18 > git rev-list --no-walk 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=10 07:07:18 Cleaning workspace 07:07:18 > git rev-parse --verify HEAD # timeout=10 07:07:18 Resetting working tree 07:07:18 > git reset --hard # timeout=10 07:07:18 > git clean -fdx # timeout=10 07:07:18 Copied 1 artifact from "OMERO-python-superbuild-build" build number 27 07:07:18 [OMERO-push] $ /bin/bash -xe /tmp/jenkins10261349154411198449.sh 07:07:18 + python3.11 -mvenv venv 07:07:19 + source /home/omero/workspace/OMERO-push/venv/bin/activate 07:07:19 ++ deactivate nondestructive 07:07:19 ++ '[' -n '' ']' 07:07:19 ++ '[' -n '' ']' 07:07:19 ++ hash -r 07:07:19 ++ '[' -n '' ']' 07:07:19 ++ unset VIRTUAL_ENV 07:07:19 ++ unset VIRTUAL_ENV_PROMPT 07:07:19 ++ '[' '!' nondestructive = nondestructive ']' 07:07:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 07:07:19 ++ export VIRTUAL_ENV 07:07:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:07:19 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:07:19 ++ export PATH 07:07:19 ++ '[' -n '' ']' 07:07:19 ++ '[' -z '' ']' 07:07:19 ++ _OLD_VIRTUAL_PS1= 07:07:19 ++ PS1='(venv) ' 07:07:19 ++ export PS1 07:07:19 ++ VIRTUAL_ENV_PROMPT='(venv) ' 07:07:19 ++ export VIRTUAL_ENV_PROMPT 07:07:19 ++ hash -r 07:07:19 + pip install -U pip 07:07:20 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.3) 07:07:20 + pip install -U scc 07:07:20 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 07:07:20 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.8.1) 07:07:20 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 07:07:20 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 07:07:20 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.17) 07:07:20 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 07:07:20 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 07:07:20 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 07:07:20 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 07:07:20 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.1) 07:07:20 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.5) 07:07:20 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1) 07:07:20 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.15.0) 07:07:20 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (46.0.3) 07:07:20 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.0.0) 07:07:20 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.23) 07:07:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.4) 07:07:20 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.11) 07:07:20 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.11.12) 07:07:20 Requirement already satisfied: ruamel.yaml.clib>=0.2.15 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.15) 07:07:21 + test -e src 07:07:21 + cd src 07:07:21 ++ git config github.user 07:07:21 + user=snoopycrimecop 07:07:21 + scc merge develop --no-ask --reset --shallow -S success-only 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Merging Pull Request(s) based on develop 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 07:07:24 2026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) without successful status 07:07:40 2026-01-23 07:07:40,397 [ scc.git] INFO - PR 6444 sbesson 'Remove omero-common-test dependency' 07:07:40 Conflicting PR. Removed from build [OMERO-push#28](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/28/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/28/consoleText) for more details. 07:07:40 Possible conflicts: 07:07:40 - PR #6442 snoopycrimecop 'update dependencies' 07:07:40 - etc/omero.properties 07:07:40 07:07:40 --conflicts 07:07:40 07:07:40 2026-01-23 07:07:40,452 [ scc.merge] INFO Repository: ome/openmicroscopy 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO Excluded PRs: 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure) 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' (label: exclude) 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO Already up to date. 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO Merged PRs: 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6442 snoopycrimecop 'update dependencies' 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6443 sbesson 'OMERO.web imgData: add integration test for multi-resolution image' 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO Conflicting PRs (not included): 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6444 sbesson 'Remove omero-common-test dependency' 07:07:40 2026-01-23 07:07:40,453 [ scc.merge] INFO 07:07:40 + cp etc/omero.properties etc/omero.properties.bak 07:07:40 + rm etc/omero.properties 07:07:40 + touch etc/omero.properties 07:07:40 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 07:07:40 + ne=249 07:07:40 ++ sed -n 1,249p etc/omero.properties.bak 07:07:40 + line='## 07:07:40 ## omero.properties 07:07:40 ## ---------------- 07:07:40 ## 07:07:40 ## DO NOT EDIT! 07:07:40 ## 07:07:40 ## 07:07:40 ## Any of these properties can be altered by using `omero config`. MODIFYING 07:07:40 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 07:07:40 ## at compile time! 07:07:40 ## 07:07:40 ## For an overview of these properties, see 07:07:40 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 07:07:40 ## 07:07:40 ## Properties marked with "DEVELOPMENT" should not be used in production. 07:07:40 07:07:40 # Comma separated list of Ice transports available to clients. The default 07:07:40 # value ("ssl,tcp") instructs Ice to open the ports specified by the 07:07:40 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 07:07:40 # will prevent all non-encrypted connections to the OMERO server. 07:07:40 # 07:07:40 # Additionally, there are two experimental values for using websockets: 07:07:40 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 07:07:40 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 07:07:40 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 07:07:40 # 07:07:40 # Note: When using websockets behind a web server like nginx, additional 07:07:40 # configuration may be needed. 07:07:40 omero.client.icetransports=ssl,tcp 07:07:40 07:07:40 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 07:07:40 # server 07:07:40 omero.ports.prefix= 07:07:40 07:07:40 # The Glacier2 SSL port number to use 07:07:40 omero.ports.ssl=4064 07:07:40 07:07:40 # The Glacier2 TCP port number to use (unencrypted) 07:07:40 omero.ports.tcp=4063 07:07:40 07:07:40 # The Glacier2 WSS port number to use 07:07:40 omero.ports.wss=4066 07:07:40 07:07:40 # The Glacier2 WS port number to use (unencrypted) 07:07:40 omero.ports.ws=4065 07:07:40 07:07:40 # The IceGrid registry port number to use 07:07:40 omero.ports.registry=4061 07:07:40 07:07:40 ############################################# 07:07:40 ## JVM configuration 07:07:40 ## 07:07:40 ## Note: changes to the omero.jvmcfg properties 07:07:40 ## will *not* be reflected in OMERO.server 07:07:40 ## since they are defined in OMERO.py. 07:07:40 ############################################# 07:07:40 ## (For documentation only) 07:07:40 # Memory strategy which will be used by default. 07:07:40 # Options include: percent, manual 07:07:40 omero.jvmcfg.strategy=percent 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Explicit value for the `-Xmx` argument, e.g. 07:07:40 # "1g" 07:07:40 omero.jvmcfg.heap_size= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Explicit value for the MaxPermSize argument 07:07:40 # to the JVM, e.g. "500M". Ignored for Java8+ 07:07:40 omero.jvmcfg.perm_gen= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Toggles on or off heap dumps on OOMs. Default is "off". 07:07:40 # The special value "tmp" will create the heap dumps in 07:07:40 # your temp directory. 07:07:40 omero.jvmcfg.heap_dump= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Used only by the percent strategy. An integer between 0 07:07:40 # and 100 which is the percent of active memory that will 07:07:40 # be used by the service. 07:07:40 omero.jvmcfg.percent= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Contains other parameters which should be passed to the 07:07:40 # JVM. The value of "append" is treated as if it were on 07:07:40 # the command line so will be separated on whitespace. 07:07:40 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 07:07:40 # results in two new arguments. 07:07:40 # Note that when using `config set` from the command line 07:07:40 # one may need to give a prior `--` option to prevent a value 07:07:40 # starting with `-` from already being parsed as an option, 07:07:40 # and values may need quoting to prevent whitespace or other 07:07:40 # significant characters from being interpreted prematurely. 07:07:40 07:07:40 omero.jvmcfg.append= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Manual override of the total system memory that 07:07:40 # OMERO will *think* is present on the local OS (MB). 07:07:40 # If unset, an attempt will be made to detect the actual 07:07:40 # amount: first by using the Python library `psutil` and 07:07:40 # if that is not installed, by running a Java tool. If 07:07:40 # neither works, 4.0GB is assumed. 07:07:40 omero.jvmcfg.system_memory= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Suggestion for strategies as to the minimum memory 07:07:40 # that they will use for calculating JVM settings (MB). 07:07:40 omero.jvmcfg.min_system_memory=3414 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Suggestion for strategies as to the maximum memory 07:07:40 # that they will use for calculating JVM settings (MB). 07:07:40 omero.jvmcfg.max_system_memory=48000 07:07:40 07:07:40 07:07:40 ############################################# 07:07:40 ## Logging properties 07:07:40 ## 07:07:40 ## Note: changes to the default omero.logging values in 07:07:40 ## this file will *not* be reflected in OMERO.server 07:07:40 ## since they are defined in OMERO.py 07:07:40 ############################################# 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Relative server directory where the log files should be stored. 07:07:40 omero.logging.directory=var/log/ 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Whether the server log files should be rotated at a certain time 07:07:40 # interval. If true, log files will be rolled over at midnight. 07:07:40 # Otherwise, log files will be rolled over at a predetermined size, 07:07:40 # see omero.logging.logsize for more information. 07:07:40 omero.logging.timedlog=false 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # If omero.logging.timedlog is false or unset, specifies the 07:07:40 # maximum size of the server log files in bytes above which a 07:07:40 # new log file should be created. 07:07:40 omero.logging.logsize=5000000 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # If omero.logging.timedlog is false or unset, specifies the 07:07:40 # number of old server log files that should be kept. Old log 07:07:40 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 07:07:40 omero.logging.lognum=9 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Specifies the threshold for the Python servers log files. Logging messages 07:07:40 # which are less severe than this value will be ignored. For a list of 07:07:40 # available values, see https://docs.python.org/3/library/logging.html#levels. 07:07:40 omero.logging.level=20 07:07:40 07:07:40 ############################################# 07:07:40 ## Ice overrides 07:07:40 ## 07:07:40 ## Though not used directly by OMERO, a number 07:07:40 ## of properties prefixed with "Ice.*" will 07:07:40 ## alter the behavior of the OMERO runtime 07:07:40 ## by configuring the Ice communicators. For a 07:07:40 ## full listing see: 07:07:40 ## 07:07:40 ## http://doc.zeroc.com/display/Ice/Property+Reference 07:07:40 ## For more information see 07:07:40 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 07:07:40 ############################################# 07:07:40 07:07:40 # Disable IPv6 by setting to 0. Only needed in 07:07:40 # certain situations. 07:07:40 Ice.IPv6=1 07:07:40 07:07:40 # Glacier2Template IceSSL defaults and overrides, 07:07:40 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 07:07:40 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 07:07:40 # update the corresponding IceSSL. property. 07:07:40 omero.glacier2.IceSSL= 07:07:40 07:07:40 # Glacier2Template SSL maximum allowed protocol (mac bug) 07:07:40 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 07:07:40 # Glacier2Template SSL allowed cipher suites 07:07:40 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 07:07:40 # Glacier2Template SSL verification requirements 07:07:40 omero.glacier2.IceSSL.VerifyPeer=0 07:07:40 # Glacier2Template SSL allowed protocols 07:07:40 omero.glacier2.IceSSL.Protocols=tls1 07:07:40 07:07:40 # Override the default set of OMERO services. 07:07:40 # For example, to run OMERO.server with Blitz and Tables only 07:07:40 # (i.e. disable Processor, DropBox, Indexer, PixelData) 07:07:40 # set this to ``master:Blitz-0,Tables-0``. 07:07:40 # Also use this to distribute OMERO services across multiple nodes, 07:07:40 # for example: 07:07:40 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 07:07:40 # See 07:07:40 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 07:07:40 omero.server.nodedescriptors= 07:07:40 07:07:40 ############################################# 07:07:40 ## Darwin (OS X) specific defaults for templated configuration files only. 07:07:40 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 07:07:40 ## file. 07:07:40 ## Do not set these properties in ``omero config``, instead set the original 07:07:40 ## ``xxx.yyy`` property 07:07:40 ############################################# 07:07:40 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Name of the Python module to use when starting the Tables service 07:07:40 omero.tables.module=runTables 07:07:40 07:07:40 ############################################# 07:07:40 ## Server product name for release artifacts 07:07:40 ############################################# 07:07:40 product.name=OMERO.server 07:07:40 07:07:40 ############################################# 07:07:40 ### Properties below this marker are ignored by 07:07:40 ### omero.install.config_parser.PropertyParser 07:07:40 ### END 07:07:40 07:07:40 ############################################# 07:07:40 ## Library versions 07:07:40 ############################################# 07:07:40 ## 07:07:40 versions.findbugs=1.2.1 07:07:40 versions.ice36=3.6.5 07:07:40 versions.ice36_lib=36 07:07:40 ## internal 07:07:40 versions.omeroshares36=3.6.3 07:07:40 versions.omeromock36=3.6.3 07:07:40 versions.icedb36=3.6.3 07:07:40 versions.ipython=1.2.1 07:07:40 07:07:40 versions.janino=2.5.10 07:07:40 07:07:40 versions.reportng=1.1.1 07:07:40 07:07:40 versions.testng=7.5 07:07:40 versions.velocity=1.4 07:07:40 07:07:40 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 07:07:40 versions.omero-scripts-url=${versions.omero-pypi} 07:07:40 07:07:40 ### 07:07:40 ### Appended Values 07:07:40 ### 07:07:40 07:07:40 ## Internal dependencies' 07:07:40 + echo '## 07:07:40 ## omero.properties 07:07:40 ## ---------------- 07:07:40 ## 07:07:40 ## DO NOT EDIT! 07:07:40 ## 07:07:40 ## 07:07:40 ## Any of these properties can be altered by using `omero config`. MODIFYING 07:07:40 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 07:07:40 ## at compile time! 07:07:40 ## 07:07:40 ## For an overview of these properties, see 07:07:40 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 07:07:40 ## 07:07:40 ## Properties marked with "DEVELOPMENT" should not be used in production. 07:07:40 07:07:40 # Comma separated list of Ice transports available to clients. The default 07:07:40 # value ("ssl,tcp") instructs Ice to open the ports specified by the 07:07:40 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 07:07:40 # will prevent all non-encrypted connections to the OMERO server. 07:07:40 # 07:07:40 # Additionally, there are two experimental values for using websockets: 07:07:40 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 07:07:40 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 07:07:40 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 07:07:40 # 07:07:40 # Note: When using websockets behind a web server like nginx, additional 07:07:40 # configuration may be needed. 07:07:40 omero.client.icetransports=ssl,tcp 07:07:40 07:07:40 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 07:07:40 # server 07:07:40 omero.ports.prefix= 07:07:40 07:07:40 # The Glacier2 SSL port number to use 07:07:40 omero.ports.ssl=4064 07:07:40 07:07:40 # The Glacier2 TCP port number to use (unencrypted) 07:07:40 omero.ports.tcp=4063 07:07:40 07:07:40 # The Glacier2 WSS port number to use 07:07:40 omero.ports.wss=4066 07:07:40 07:07:40 # The Glacier2 WS port number to use (unencrypted) 07:07:40 omero.ports.ws=4065 07:07:40 07:07:40 # The IceGrid registry port number to use 07:07:40 omero.ports.registry=4061 07:07:40 07:07:40 ############################################# 07:07:40 ## JVM configuration 07:07:40 ## 07:07:40 ## Note: changes to the omero.jvmcfg properties 07:07:40 ## will *not* be reflected in OMERO.server 07:07:40 ## since they are defined in OMERO.py. 07:07:40 ############################################# 07:07:40 ## (For documentation only) 07:07:40 # Memory strategy which will be used by default. 07:07:40 # Options include: percent, manual 07:07:40 omero.jvmcfg.strategy=percent 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Explicit value for the `-Xmx` argument, e.g. 07:07:40 # "1g" 07:07:40 omero.jvmcfg.heap_size= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Explicit value for the MaxPermSize argument 07:07:40 # to the JVM, e.g. "500M". Ignored for Java8+ 07:07:40 omero.jvmcfg.perm_gen= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Toggles on or off heap dumps on OOMs. Default is "off". 07:07:40 # The special value "tmp" will create the heap dumps in 07:07:40 # your temp directory. 07:07:40 omero.jvmcfg.heap_dump= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Used only by the percent strategy. An integer between 0 07:07:40 # and 100 which is the percent of active memory that will 07:07:40 # be used by the service. 07:07:40 omero.jvmcfg.percent= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Contains other parameters which should be passed to the 07:07:40 # JVM. The value of "append" is treated as if it were on 07:07:40 # the command line so will be separated on whitespace. 07:07:40 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 07:07:40 # results in two new arguments. 07:07:40 # Note that when using `config set` from the command line 07:07:40 # one may need to give a prior `--` option to prevent a value 07:07:40 # starting with `-` from already being parsed as an option, 07:07:40 # and values may need quoting to prevent whitespace or other 07:07:40 # significant characters from being interpreted prematurely. 07:07:40 07:07:40 omero.jvmcfg.append= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Manual override of the total system memory that 07:07:40 # OMERO will *think* is present on the local OS (MB). 07:07:40 # If unset, an attempt will be made to detect the actual 07:07:40 # amount: first by using the Python library `psutil` and 07:07:40 # if that is not installed, by running a Java tool. If 07:07:40 # neither works, 4.0GB is assumed. 07:07:40 omero.jvmcfg.system_memory= 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Suggestion for strategies as to the minimum memory 07:07:40 # that they will use for calculating JVM settings (MB). 07:07:40 omero.jvmcfg.min_system_memory=3414 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Suggestion for strategies as to the maximum memory 07:07:40 # that they will use for calculating JVM settings (MB). 07:07:40 omero.jvmcfg.max_system_memory=48000 07:07:40 07:07:40 07:07:40 ############################################# 07:07:40 ## Logging properties 07:07:40 ## 07:07:40 ## Note: changes to the default omero.logging values in 07:07:40 ## this file will *not* be reflected in OMERO.server 07:07:40 ## since they are defined in OMERO.py 07:07:40 ############################################# 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Relative server directory where the log files should be stored. 07:07:40 omero.logging.directory=var/log/ 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Whether the server log files should be rotated at a certain time 07:07:40 # interval. If true, log files will be rolled over at midnight. 07:07:40 # Otherwise, log files will be rolled over at a predetermined size, 07:07:40 # see omero.logging.logsize for more information. 07:07:40 omero.logging.timedlog=false 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # If omero.logging.timedlog is false or unset, specifies the 07:07:40 # maximum size of the server log files in bytes above which a 07:07:40 # new log file should be created. 07:07:40 omero.logging.logsize=5000000 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # If omero.logging.timedlog is false or unset, specifies the 07:07:40 # number of old server log files that should be kept. Old log 07:07:40 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 07:07:40 omero.logging.lognum=9 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Specifies the threshold for the Python servers log files. Logging messages 07:07:40 # which are less severe than this value will be ignored. For a list of 07:07:40 # available values, see https://docs.python.org/3/library/logging.html#levels. 07:07:40 omero.logging.level=20 07:07:40 07:07:40 ############################################# 07:07:40 ## Ice overrides 07:07:40 ## 07:07:40 ## Though not used directly by OMERO, a number 07:07:40 ## of properties prefixed with "Ice.*" will 07:07:40 ## alter the behavior of the OMERO runtime 07:07:40 ## by configuring the Ice communicators. For a 07:07:40 ## full listing see: 07:07:40 ## 07:07:40 ## http://doc.zeroc.com/display/Ice/Property+Reference 07:07:40 ## For more information see 07:07:40 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 07:07:40 ############################################# 07:07:40 07:07:40 # Disable IPv6 by setting to 0. Only needed in 07:07:40 # certain situations. 07:07:40 Ice.IPv6=1 07:07:40 07:07:40 # Glacier2Template IceSSL defaults and overrides, 07:07:40 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 07:07:40 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 07:07:40 # update the corresponding IceSSL. property. 07:07:40 omero.glacier2.IceSSL= 07:07:40 07:07:40 # Glacier2Template SSL maximum allowed protocol (mac bug) 07:07:40 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 07:07:40 # Glacier2Template SSL allowed cipher suites 07:07:40 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 07:07:40 # Glacier2Template SSL verification requirements 07:07:40 omero.glacier2.IceSSL.VerifyPeer=0 07:07:40 # Glacier2Template SSL allowed protocols 07:07:40 omero.glacier2.IceSSL.Protocols=tls1 07:07:40 07:07:40 # Override the default set of OMERO services. 07:07:40 # For example, to run OMERO.server with Blitz and Tables only 07:07:40 # (i.e. disable Processor, DropBox, Indexer, PixelData) 07:07:40 # set this to ``master:Blitz-0,Tables-0``. 07:07:40 # Also use this to distribute OMERO services across multiple nodes, 07:07:40 # for example: 07:07:40 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 07:07:40 # See 07:07:40 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 07:07:40 omero.server.nodedescriptors= 07:07:40 07:07:40 ############################################# 07:07:40 ## Darwin (OS X) specific defaults for templated configuration files only. 07:07:40 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 07:07:40 ## file. 07:07:40 ## Do not set these properties in ``omero config``, instead set the original 07:07:40 ## ``xxx.yyy`` property 07:07:40 ############################################# 07:07:40 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 07:07:40 07:07:40 ## (For documentation only) 07:07:40 # Name of the Python module to use when starting the Tables service 07:07:40 omero.tables.module=runTables 07:07:40 07:07:40 ############################################# 07:07:40 ## Server product name for release artifacts 07:07:40 ############################################# 07:07:40 product.name=OMERO.server 07:07:40 07:07:40 ############################################# 07:07:40 ### Properties below this marker are ignored by 07:07:40 ### omero.install.config_parser.PropertyParser 07:07:40 ### END 07:07:40 07:07:40 ############################################# 07:07:40 ## Library versions 07:07:40 ############################################# 07:07:40 ## 07:07:40 versions.findbugs=1.2.1 07:07:40 versions.ice36=3.6.5 07:07:40 versions.ice36_lib=36 07:07:40 ## internal 07:07:40 versions.omeroshares36=3.6.3 07:07:40 versions.omeromock36=3.6.3 07:07:40 versions.icedb36=3.6.3 07:07:40 versions.ipython=1.2.1 07:07:40 07:07:40 versions.janino=2.5.10 07:07:40 07:07:40 versions.reportng=1.1.1 07:07:40 07:07:40 versions.testng=7.5 07:07:40 versions.velocity=1.4 07:07:40 07:07:40 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 07:07:40 versions.omero-scripts-url=${versions.omero-pypi} 07:07:40 07:07:40 ### 07:07:40 ### Appended Values 07:07:40 ### 07:07:40 07:07:40 ## Internal dependencies' 07:07:40 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 07:07:40 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 07:07:40 + echo versions.scripts-prefix= 07:07:40 + echo versions.scripts=merge_ci 07:07:40 + cat /home/omero/workspace/OMERO-push/version.properties 07:07:40 + git commit -a -m 'Add version.properties to etc/omero.properties' 07:07:40 [detached HEAD 6d15fa9b03] Add version.properties to etc/omero.properties 07:07:40 1 file changed, 46 insertions(+), 7 deletions(-) 07:07:40 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 07:07:41 To github.com:snoopycrimecop/openmicroscopy.git 07:07:41 + 43bd9813d6...6d15fa9b03 HEAD -> merge_ci (forced update) 07:07:41 Finished: SUCCESS