01:18:01 Started by upstream project "Trigger" build number 41 01:18:01 originally caused by: 01:18:01 Started by timer 01:18:01 Running as SYSTEM 01:18:01 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 01:18:01 The recommended git tool is: NONE 01:18:01 No credentials specified 01:18:01 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 01:18:01 Fetching changes from the remote Git repository 01:18:01 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 01:18:01 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 01:18:01 > git --version # timeout=10 01:18:01 > git --version # 'git version 2.52.0' 01:18:01 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:18:06 > git rev-parse origin/develop^{commit} # timeout=10 01:18:06 Checking out Revision 81c671cab8055f5d06ef64556fd473ada8de4922 (origin/develop) 01:18:06 > git config core.sparsecheckout # timeout=10 01:18:06 > git checkout -f 81c671cab8055f5d06ef64556fd473ada8de4922 # timeout=30 01:18:09 Commit message: "Merge pull request #6455 from will-moore/external_info_test_rois" 01:18:09 > git rev-list --no-walk 81c671cab8055f5d06ef64556fd473ada8de4922 # timeout=10 01:18:09 Cleaning workspace 01:18:09 > git rev-parse --verify HEAD # timeout=10 01:18:09 Resetting working tree 01:18:09 > git reset --hard # timeout=10 01:18:09 > git clean -fdx # timeout=10 01:18:10 Copied 1 artifact from "OMERO-python-superbuild-build" build number 26 01:18:10 [OMERO-push] $ /bin/bash -xe /tmp/jenkins11541611810524797858.sh 01:18:10 + python3.11 -mvenv venv 01:18:12 + source /home/omero/workspace/OMERO-push/venv/bin/activate 01:18:12 ++ deactivate nondestructive 01:18:12 ++ '[' -n '' ']' 01:18:12 ++ '[' -n '' ']' 01:18:12 ++ hash -r 01:18:12 ++ '[' -n '' ']' 01:18:12 ++ unset VIRTUAL_ENV 01:18:12 ++ unset VIRTUAL_ENV_PROMPT 01:18:12 ++ '[' '!' nondestructive = nondestructive ']' 01:18:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 01:18:12 ++ export VIRTUAL_ENV 01:18:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:12 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:18:12 ++ export PATH 01:18:12 ++ '[' -n '' ']' 01:18:12 ++ '[' -z '' ']' 01:18:12 ++ _OLD_VIRTUAL_PS1= 01:18:12 ++ PS1='(venv) ' 01:18:12 ++ export PS1 01:18:12 ++ VIRTUAL_ENV_PROMPT='(venv) ' 01:18:12 ++ export VIRTUAL_ENV_PROMPT 01:18:12 ++ hash -r 01:18:12 + pip install -U pip 01:18:16 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2) 01:18:16 + pip install -U scc 01:18:17 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 01:18:17 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 01:18:17 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 01:18:17 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 01:18:17 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 01:18:17 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 01:18:17 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 01:18:17 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 01:18:17 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 01:18:17 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 01:18:17 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 01:18:17 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 01:18:17 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 01:18:17 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 01:18:17 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 01:18:17 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 01:18:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 01:18:17 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 01:18:17 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 01:18:17 + test -e src 01:18:17 + cd src 01:18:17 ++ git config github.user 01:18:17 + user=snoopycrimecop 01:18:17 + scc merge develop --no-ask --reset --shallow -S success-only 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Merging Pull Request(s) based on develop 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 01:18:24 2026-08-02 01:18:24,703 [ scc.merge] INFO Excluding Pull Request(s) without successful status 01:18:52 2026-08-02 01:18:52,132 [ scc.merge] INFO Repository: ome/openmicroscopy 01:18:52 2026-08-02 01:18:52,132 [ scc.merge] INFO Excluded PRs: 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6472 pwalczysko 'Try to fix thumb test [one,set]' (label: exclude) 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure) 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment) 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO Already up to date. 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO Merged PRs: 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py' 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6471 pwalczysko 'Rewrite pyramid tests' 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO - PR 6473 sbesson 'Java skip thumbnails permission tests: use fake pyramidal images' 01:18:52 2026-08-02 01:18:52,133 [ scc.merge] INFO 01:18:52 + cp etc/omero.properties etc/omero.properties.bak 01:18:52 + rm etc/omero.properties 01:18:52 + touch etc/omero.properties 01:18:52 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 01:18:52 + ne=249 01:18:52 ++ sed -n 1,249p etc/omero.properties.bak 01:18:52 + line='## 01:18:52 ## omero.properties 01:18:52 ## ---------------- 01:18:52 ## 01:18:52 ## DO NOT EDIT! 01:18:52 ## 01:18:52 ## 01:18:52 ## Any of these properties can be altered by using `omero config`. MODIFYING 01:18:52 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 01:18:52 ## at compile time! 01:18:52 ## 01:18:52 ## For an overview of these properties, see 01:18:52 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 01:18:52 ## 01:18:52 ## Properties marked with "DEVELOPMENT" should not be used in production. 01:18:52 01:18:52 # Comma separated list of Ice transports available to clients. The default 01:18:52 # value ("ssl,tcp") instructs Ice to open the ports specified by the 01:18:52 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 01:18:52 # will prevent all non-encrypted connections to the OMERO server. 01:18:52 # 01:18:52 # Additionally, there are two experimental values for using websockets: 01:18:52 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 01:18:52 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 01:18:52 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 01:18:52 # 01:18:52 # Note: When using websockets behind a web server like nginx, additional 01:18:52 # configuration may be needed. 01:18:52 omero.client.icetransports=ssl,tcp 01:18:52 01:18:52 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 01:18:52 # server 01:18:52 omero.ports.prefix= 01:18:52 01:18:52 # The Glacier2 SSL port number to use 01:18:52 omero.ports.ssl=4064 01:18:52 01:18:52 # The Glacier2 TCP port number to use (unencrypted) 01:18:52 omero.ports.tcp=4063 01:18:52 01:18:52 # The Glacier2 WSS port number to use 01:18:52 omero.ports.wss=4066 01:18:52 01:18:52 # The Glacier2 WS port number to use (unencrypted) 01:18:52 omero.ports.ws=4065 01:18:52 01:18:52 # The IceGrid registry port number to use 01:18:52 omero.ports.registry=4061 01:18:52 01:18:52 ############################################# 01:18:52 ## JVM configuration 01:18:52 ## 01:18:52 ## Note: changes to the omero.jvmcfg properties 01:18:52 ## will *not* be reflected in OMERO.server 01:18:52 ## since they are defined in OMERO.py. 01:18:52 ############################################# 01:18:52 ## (For documentation only) 01:18:52 # Memory strategy which will be used by default. 01:18:52 # Options include: percent, manual 01:18:52 omero.jvmcfg.strategy=percent 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Explicit value for the `-Xmx` argument, e.g. 01:18:52 # "1g" 01:18:52 omero.jvmcfg.heap_size= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Explicit value for the MaxPermSize argument 01:18:52 # to the JVM, e.g. "500M". Ignored for Java8+ 01:18:52 omero.jvmcfg.perm_gen= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Toggles on or off heap dumps on OOMs. Default is "off". 01:18:52 # The special value "tmp" will create the heap dumps in 01:18:52 # your temp directory. 01:18:52 omero.jvmcfg.heap_dump= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Used only by the percent strategy. An integer between 0 01:18:52 # and 100 which is the percent of active memory that will 01:18:52 # be used by the service. 01:18:52 omero.jvmcfg.percent= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Contains other parameters which should be passed to the 01:18:52 # JVM. The value of "append" is treated as if it were on 01:18:52 # the command line so will be separated on whitespace. 01:18:52 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 01:18:52 # results in two new arguments. 01:18:52 # Note that when using `config set` from the command line 01:18:52 # one may need to give a prior `--` option to prevent a value 01:18:52 # starting with `-` from already being parsed as an option, 01:18:52 # and values may need quoting to prevent whitespace or other 01:18:52 # significant characters from being interpreted prematurely. 01:18:52 01:18:52 omero.jvmcfg.append= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Manual override of the total system memory that 01:18:52 # OMERO will *think* is present on the local OS (MB). 01:18:52 # If unset, an attempt will be made to detect the actual 01:18:52 # amount: first by using the Python library `psutil` and 01:18:52 # if that is not installed, by running a Java tool. If 01:18:52 # neither works, 4.0GB is assumed. 01:18:52 omero.jvmcfg.system_memory= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Suggestion for strategies as to the minimum memory 01:18:52 # that they will use for calculating JVM settings (MB). 01:18:52 omero.jvmcfg.min_system_memory=3414 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Suggestion for strategies as to the maximum memory 01:18:52 # that they will use for calculating JVM settings (MB). 01:18:52 omero.jvmcfg.max_system_memory=48000 01:18:52 01:18:52 01:18:52 ############################################# 01:18:52 ## Logging properties 01:18:52 ## 01:18:52 ## Note: changes to the default omero.logging values in 01:18:52 ## this file will *not* be reflected in OMERO.server 01:18:52 ## since they are defined in OMERO.py 01:18:52 ############################################# 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Relative server directory where the log files should be stored. 01:18:52 omero.logging.directory=var/log/ 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Whether the server log files should be rotated at a certain time 01:18:52 # interval. If true, log files will be rolled over at midnight. 01:18:52 # Otherwise, log files will be rolled over at a predetermined size, 01:18:52 # see omero.logging.logsize for more information. 01:18:52 omero.logging.timedlog=false 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # If omero.logging.timedlog is false or unset, specifies the 01:18:52 # maximum size of the server log files in bytes above which a 01:18:52 # new log file should be created. 01:18:52 omero.logging.logsize=5000000 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # If omero.logging.timedlog is false or unset, specifies the 01:18:52 # number of old server log files that should be kept. Old log 01:18:52 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 01:18:52 omero.logging.lognum=9 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Specifies the threshold for the Python servers log files. Logging messages 01:18:52 # which are less severe than this value will be ignored. For a list of 01:18:52 # available values, see https://docs.python.org/3/library/logging.html#levels. 01:18:52 omero.logging.level=20 01:18:52 01:18:52 ############################################# 01:18:52 ## Ice overrides 01:18:52 ## 01:18:52 ## Though not used directly by OMERO, a number 01:18:52 ## of properties prefixed with "Ice.*" will 01:18:52 ## alter the behavior of the OMERO runtime 01:18:52 ## by configuring the Ice communicators. For a 01:18:52 ## full listing see: 01:18:52 ## 01:18:52 ## http://doc.zeroc.com/display/Ice/Property+Reference 01:18:52 ## For more information see 01:18:52 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 01:18:52 ############################################# 01:18:52 01:18:52 # Disable IPv6 by setting to 0. Only needed in 01:18:52 # certain situations. 01:18:52 Ice.IPv6=1 01:18:52 01:18:52 # Glacier2Template IceSSL defaults and overrides, 01:18:52 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 01:18:52 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 01:18:52 # update the corresponding IceSSL. property. 01:18:52 omero.glacier2.IceSSL= 01:18:52 01:18:52 # Glacier2Template SSL maximum allowed protocol (mac bug) 01:18:52 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 01:18:52 # Glacier2Template SSL allowed cipher suites 01:18:52 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 01:18:52 # Glacier2Template SSL verification requirements 01:18:52 omero.glacier2.IceSSL.VerifyPeer=0 01:18:52 # Glacier2Template SSL allowed protocols 01:18:52 omero.glacier2.IceSSL.Protocols=tls1 01:18:52 01:18:52 # Override the default set of OMERO services. 01:18:52 # For example, to run OMERO.server with Blitz and Tables only 01:18:52 # (i.e. disable Processor, DropBox, Indexer, PixelData) 01:18:52 # set this to ``master:Blitz-0,Tables-0``. 01:18:52 # Also use this to distribute OMERO services across multiple nodes, 01:18:52 # for example: 01:18:52 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 01:18:52 # See 01:18:52 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 01:18:52 omero.server.nodedescriptors= 01:18:52 01:18:52 ############################################# 01:18:52 ## Darwin (OS X) specific defaults for templated configuration files only. 01:18:52 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 01:18:52 ## file. 01:18:52 ## Do not set these properties in ``omero config``, instead set the original 01:18:52 ## ``xxx.yyy`` property 01:18:52 ############################################# 01:18:52 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Name of the Python module to use when starting the Tables service 01:18:52 omero.tables.module=runTables 01:18:52 01:18:52 ############################################# 01:18:52 ## Server product name for release artifacts 01:18:52 ############################################# 01:18:52 product.name=OMERO.server 01:18:52 01:18:52 ############################################# 01:18:52 ### Properties below this marker are ignored by 01:18:52 ### omero.install.config_parser.PropertyParser 01:18:52 ### END 01:18:52 01:18:52 ############################################# 01:18:52 ## Library versions 01:18:52 ############################################# 01:18:52 ## 01:18:52 versions.findbugs=1.2.1 01:18:52 versions.ice36=3.6.5 01:18:52 versions.ice36_lib=36 01:18:52 ## internal 01:18:52 versions.omeroshares36=3.6.3 01:18:52 versions.omeromock36=3.6.3 01:18:52 versions.icedb36=3.6.3 01:18:52 versions.ipython=1.2.1 01:18:52 01:18:52 versions.janino=2.5.10 01:18:52 01:18:52 versions.reportng=1.1.1 01:18:52 01:18:52 versions.testng=7.5 01:18:52 versions.velocity=1.4 01:18:52 01:18:52 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 01:18:52 versions.omero-scripts-url=${versions.omero-pypi} 01:18:52 01:18:52 ### 01:18:52 ### Appended Values 01:18:52 ### 01:18:52 01:18:52 ## Internal dependencies' 01:18:52 + echo '## 01:18:52 ## omero.properties 01:18:52 ## ---------------- 01:18:52 ## 01:18:52 ## DO NOT EDIT! 01:18:52 ## 01:18:52 ## 01:18:52 ## Any of these properties can be altered by using `omero config`. MODIFYING 01:18:52 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 01:18:52 ## at compile time! 01:18:52 ## 01:18:52 ## For an overview of these properties, see 01:18:52 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 01:18:52 ## 01:18:52 ## Properties marked with "DEVELOPMENT" should not be used in production. 01:18:52 01:18:52 # Comma separated list of Ice transports available to clients. The default 01:18:52 # value ("ssl,tcp") instructs Ice to open the ports specified by the 01:18:52 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 01:18:52 # will prevent all non-encrypted connections to the OMERO server. 01:18:52 # 01:18:52 # Additionally, there are two experimental values for using websockets: 01:18:52 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 01:18:52 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 01:18:52 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 01:18:52 # 01:18:52 # Note: When using websockets behind a web server like nginx, additional 01:18:52 # configuration may be needed. 01:18:52 omero.client.icetransports=ssl,tcp 01:18:52 01:18:52 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 01:18:52 # server 01:18:52 omero.ports.prefix= 01:18:52 01:18:52 # The Glacier2 SSL port number to use 01:18:52 omero.ports.ssl=4064 01:18:52 01:18:52 # The Glacier2 TCP port number to use (unencrypted) 01:18:52 omero.ports.tcp=4063 01:18:52 01:18:52 # The Glacier2 WSS port number to use 01:18:52 omero.ports.wss=4066 01:18:52 01:18:52 # The Glacier2 WS port number to use (unencrypted) 01:18:52 omero.ports.ws=4065 01:18:52 01:18:52 # The IceGrid registry port number to use 01:18:52 omero.ports.registry=4061 01:18:52 01:18:52 ############################################# 01:18:52 ## JVM configuration 01:18:52 ## 01:18:52 ## Note: changes to the omero.jvmcfg properties 01:18:52 ## will *not* be reflected in OMERO.server 01:18:52 ## since they are defined in OMERO.py. 01:18:52 ############################################# 01:18:52 ## (For documentation only) 01:18:52 # Memory strategy which will be used by default. 01:18:52 # Options include: percent, manual 01:18:52 omero.jvmcfg.strategy=percent 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Explicit value for the `-Xmx` argument, e.g. 01:18:52 # "1g" 01:18:52 omero.jvmcfg.heap_size= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Explicit value for the MaxPermSize argument 01:18:52 # to the JVM, e.g. "500M". Ignored for Java8+ 01:18:52 omero.jvmcfg.perm_gen= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Toggles on or off heap dumps on OOMs. Default is "off". 01:18:52 # The special value "tmp" will create the heap dumps in 01:18:52 # your temp directory. 01:18:52 omero.jvmcfg.heap_dump= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Used only by the percent strategy. An integer between 0 01:18:52 # and 100 which is the percent of active memory that will 01:18:52 # be used by the service. 01:18:52 omero.jvmcfg.percent= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Contains other parameters which should be passed to the 01:18:52 # JVM. The value of "append" is treated as if it were on 01:18:52 # the command line so will be separated on whitespace. 01:18:52 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 01:18:52 # results in two new arguments. 01:18:52 # Note that when using `config set` from the command line 01:18:52 # one may need to give a prior `--` option to prevent a value 01:18:52 # starting with `-` from already being parsed as an option, 01:18:52 # and values may need quoting to prevent whitespace or other 01:18:52 # significant characters from being interpreted prematurely. 01:18:52 01:18:52 omero.jvmcfg.append= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Manual override of the total system memory that 01:18:52 # OMERO will *think* is present on the local OS (MB). 01:18:52 # If unset, an attempt will be made to detect the actual 01:18:52 # amount: first by using the Python library `psutil` and 01:18:52 # if that is not installed, by running a Java tool. If 01:18:52 # neither works, 4.0GB is assumed. 01:18:52 omero.jvmcfg.system_memory= 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Suggestion for strategies as to the minimum memory 01:18:52 # that they will use for calculating JVM settings (MB). 01:18:52 omero.jvmcfg.min_system_memory=3414 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Suggestion for strategies as to the maximum memory 01:18:52 # that they will use for calculating JVM settings (MB). 01:18:52 omero.jvmcfg.max_system_memory=48000 01:18:52 01:18:52 01:18:52 ############################################# 01:18:52 ## Logging properties 01:18:52 ## 01:18:52 ## Note: changes to the default omero.logging values in 01:18:52 ## this file will *not* be reflected in OMERO.server 01:18:52 ## since they are defined in OMERO.py 01:18:52 ############################################# 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Relative server directory where the log files should be stored. 01:18:52 omero.logging.directory=var/log/ 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Whether the server log files should be rotated at a certain time 01:18:52 # interval. If true, log files will be rolled over at midnight. 01:18:52 # Otherwise, log files will be rolled over at a predetermined size, 01:18:52 # see omero.logging.logsize for more information. 01:18:52 omero.logging.timedlog=false 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # If omero.logging.timedlog is false or unset, specifies the 01:18:52 # maximum size of the server log files in bytes above which a 01:18:52 # new log file should be created. 01:18:52 omero.logging.logsize=5000000 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # If omero.logging.timedlog is false or unset, specifies the 01:18:52 # number of old server log files that should be kept. Old log 01:18:52 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 01:18:52 omero.logging.lognum=9 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Specifies the threshold for the Python servers log files. Logging messages 01:18:52 # which are less severe than this value will be ignored. For a list of 01:18:52 # available values, see https://docs.python.org/3/library/logging.html#levels. 01:18:52 omero.logging.level=20 01:18:52 01:18:52 ############################################# 01:18:52 ## Ice overrides 01:18:52 ## 01:18:52 ## Though not used directly by OMERO, a number 01:18:52 ## of properties prefixed with "Ice.*" will 01:18:52 ## alter the behavior of the OMERO runtime 01:18:52 ## by configuring the Ice communicators. For a 01:18:52 ## full listing see: 01:18:52 ## 01:18:52 ## http://doc.zeroc.com/display/Ice/Property+Reference 01:18:52 ## For more information see 01:18:52 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 01:18:52 ############################################# 01:18:52 01:18:52 # Disable IPv6 by setting to 0. Only needed in 01:18:52 # certain situations. 01:18:52 Ice.IPv6=1 01:18:52 01:18:52 # Glacier2Template IceSSL defaults and overrides, 01:18:52 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 01:18:52 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 01:18:52 # update the corresponding IceSSL. property. 01:18:52 omero.glacier2.IceSSL= 01:18:52 01:18:52 # Glacier2Template SSL maximum allowed protocol (mac bug) 01:18:52 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 01:18:52 # Glacier2Template SSL allowed cipher suites 01:18:52 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 01:18:52 # Glacier2Template SSL verification requirements 01:18:52 omero.glacier2.IceSSL.VerifyPeer=0 01:18:52 # Glacier2Template SSL allowed protocols 01:18:52 omero.glacier2.IceSSL.Protocols=tls1 01:18:52 01:18:52 # Override the default set of OMERO services. 01:18:52 # For example, to run OMERO.server with Blitz and Tables only 01:18:52 # (i.e. disable Processor, DropBox, Indexer, PixelData) 01:18:52 # set this to ``master:Blitz-0,Tables-0``. 01:18:52 # Also use this to distribute OMERO services across multiple nodes, 01:18:52 # for example: 01:18:52 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 01:18:52 # See 01:18:52 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 01:18:52 omero.server.nodedescriptors= 01:18:52 01:18:52 ############################################# 01:18:52 ## Darwin (OS X) specific defaults for templated configuration files only. 01:18:52 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 01:18:52 ## file. 01:18:52 ## Do not set these properties in ``omero config``, instead set the original 01:18:52 ## ``xxx.yyy`` property 01:18:52 ############################################# 01:18:52 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 01:18:52 01:18:52 ## (For documentation only) 01:18:52 # Name of the Python module to use when starting the Tables service 01:18:52 omero.tables.module=runTables 01:18:52 01:18:52 ############################################# 01:18:52 ## Server product name for release artifacts 01:18:52 ############################################# 01:18:52 product.name=OMERO.server 01:18:52 01:18:52 ############################################# 01:18:52 ### Properties below this marker are ignored by 01:18:52 ### omero.install.config_parser.PropertyParser 01:18:52 ### END 01:18:52 01:18:52 ############################################# 01:18:52 ## Library versions 01:18:52 ############################################# 01:18:52 ## 01:18:52 versions.findbugs=1.2.1 01:18:52 versions.ice36=3.6.5 01:18:52 versions.ice36_lib=36 01:18:52 ## internal 01:18:52 versions.omeroshares36=3.6.3 01:18:52 versions.omeromock36=3.6.3 01:18:52 versions.icedb36=3.6.3 01:18:52 versions.ipython=1.2.1 01:18:52 01:18:52 versions.janino=2.5.10 01:18:52 01:18:52 versions.reportng=1.1.1 01:18:52 01:18:52 versions.testng=7.5 01:18:52 versions.velocity=1.4 01:18:52 01:18:52 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 01:18:52 versions.omero-scripts-url=${versions.omero-pypi} 01:18:52 01:18:52 ### 01:18:52 ### Appended Values 01:18:52 ### 01:18:52 01:18:52 ## Internal dependencies' 01:18:52 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 01:18:52 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 01:18:52 + echo versions.scripts-prefix= 01:18:52 + echo versions.scripts=merge_ci 01:18:52 + cat /home/omero/workspace/OMERO-push/version.properties 01:18:52 + git commit -a -m 'Add version.properties to etc/omero.properties' 01:18:52 [detached HEAD 4200ce5a56] Add version.properties to etc/omero.properties 01:18:52 1 file changed, 46 insertions(+), 6 deletions(-) 01:18:52 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 01:18:55 To github.com:snoopycrimecop/openmicroscopy.git 01:18:55 + 6b3a800bcb...4200ce5a56 HEAD -> merge_ci (forced update) 01:18:55 Finished: SUCCESS