00:38:08 Started by upstream project "Trigger" build number 37 00:38:08 originally caused by: 00:38:08 Started by timer 00:38:08 Running as SYSTEM 00:38:08 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 00:38:08 The recommended git tool is: NONE 00:38:08 No credentials specified 00:38:08 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 00:38:08 Fetching changes from the remote Git repository 00:38:08 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 00:38:08 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 00:38:08 > git --version # timeout=10 00:38:08 > git --version # 'git version 2.39.3' 00:38:08 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:38:11 > git rev-parse origin/develop^{commit} # timeout=10 00:38:11 Checking out Revision 961096a3710eb8fb6efc46bb69b91f9be98b769f (origin/develop) 00:38:11 > git config core.sparsecheckout # timeout=10 00:38:11 > git checkout -f 961096a3710eb8fb6efc46bb69b91f9be98b769f # timeout=30 00:38:12 Commit message: "Merge pull request #6378 from DavidStirling/ann_names" 00:38:12 > git rev-list --no-walk 961096a3710eb8fb6efc46bb69b91f9be98b769f # timeout=10 00:38:12 Cleaning workspace 00:38:12 > git rev-parse --verify HEAD # timeout=10 00:38:12 Resetting working tree 00:38:12 > git reset --hard # timeout=10 00:38:12 > git clean -fdx # timeout=10 00:38:12 Copied 1 artifact from "OMERO-python-superbuild-build" build number 32 00:38:12 [OMERO-push] $ /bin/bash -xe /tmp/jenkins6043965903290675286.sh 00:38:12 + python3 -mvenv venv 00:38:15 + source /home/omero/workspace/OMERO-push/venv/bin/activate 00:38:15 ++ deactivate nondestructive 00:38:15 ++ '[' -n '' ']' 00:38:15 ++ '[' -n '' ']' 00:38:15 ++ '[' -n /bin/bash -o -n '' ']' 00:38:15 ++ hash -r 00:38:15 ++ '[' -n '' ']' 00:38:15 ++ unset VIRTUAL_ENV 00:38:15 ++ '[' '!' nondestructive = nondestructive ']' 00:38:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 00:38:15 ++ export VIRTUAL_ENV 00:38:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:38:15 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:38:15 ++ export PATH 00:38:15 ++ '[' -n '' ']' 00:38:15 ++ '[' -z '' ']' 00:38:15 ++ _OLD_VIRTUAL_PS1= 00:38:15 ++ PS1='(venv) ' 00:38:15 ++ export PS1 00:38:15 ++ '[' -n /bin/bash -o -n '' ']' 00:38:15 ++ hash -r 00:38:15 + pip install -U pip 00:38:18 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.0) 00:38:19 + pip install -U scc 00:38:19 Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1) 00:38:20 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) 00:38:20 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) 00:38:20 Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) 00:38:20 Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) 00:38:20 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) 00:38:20 Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) 00:38:20 Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) 00:38:20 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) 00:38:20 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) 00:38:20 Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) 00:38:20 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) 00:38:20 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) 00:38:20 Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) 00:38:20 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) 00:38:20 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) 00:38:20 Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) 00:38:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) 00:38:20 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) 00:38:20 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) 00:38:20 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) 00:38:20 Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) 00:38:20 + test -e src 00:38:20 + cd src 00:38:20 ++ git config github.user 00:38:20 + user=snoopycrimecop 00:38:20 + scc merge develop --no-ask --reset --shallow -S success-only 00:38:26 2024-04-14 00:38:26,756 [ scc.merge] INFO Merging Pull Request(s) based on develop 00:38:26 2024-04-14 00:38:26,757 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 00:38:26 2024-04-14 00:38:26,757 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 00:38:26 2024-04-14 00:38:26,757 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 00:38:26 2024-04-14 00:38:26,757 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 00:38:26 2024-04-14 00:38:26,757 [ scc.merge] INFO Excluding Pull Request(s) without successful status 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO Repository: ome/openmicroscopy 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO Excluded PRs: 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO Already up to date. 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO Merged PRs: 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6309 jburel 'add try block' 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6376 snoopycrimecop 'update dependencies' 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6377 sbesson 'Removal of python-future compatibility' 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO - PR 6381 jburel 'Session creation' 00:38:49 2024-04-14 00:38:49,251 [ scc.merge] INFO 00:38:49 + cp etc/omero.properties etc/omero.properties.bak 00:38:49 + rm etc/omero.properties 00:38:49 + touch etc/omero.properties 00:38:49 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 00:38:49 + ne=210 00:38:49 ++ sed -n 1,210p etc/omero.properties.bak 00:38:49 + line='## 00:38:49 ## omero.properties 00:38:49 ## ---------------- 00:38:49 ## 00:38:49 ## DO NOT EDIT! 00:38:49 ## 00:38:49 ## 00:38:49 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:38:49 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:38:49 ## at compile time! 00:38:49 ## 00:38:49 ## For an overview of these properties, see 00:38:49 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:38:49 ## 00:38:49 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:38:49 00:38:49 # Comma separated list of Ice transports available to clients. The default 00:38:49 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:38:49 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:38:49 # will prevent all non-encrypted connections to the OMERO server. 00:38:49 # 00:38:49 # Additionally, there are two experimental values for using websockets: 00:38:49 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:38:49 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:38:49 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:38:49 # 00:38:49 # Note: When using websockets behind a web server like nginx, additional 00:38:49 # configuration may be needed. 00:38:49 omero.client.icetransports=ssl,tcp 00:38:49 00:38:49 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:38:49 # server 00:38:49 omero.ports.prefix= 00:38:49 00:38:49 # The Glacier2 SSL port number to use 00:38:49 omero.ports.ssl=4064 00:38:49 00:38:49 # The Glacier2 TCP port number to use (unencrypted) 00:38:49 omero.ports.tcp=4063 00:38:49 00:38:49 # The Glacier2 WSS port number to use 00:38:49 omero.ports.wss=4066 00:38:49 00:38:49 # The Glacier2 WS port number to use (unencrypted) 00:38:49 omero.ports.ws=4065 00:38:49 00:38:49 # The IceGrid registry port number to use 00:38:49 omero.ports.registry=4061 00:38:49 00:38:49 ############################################# 00:38:49 ## JVM configuration 00:38:49 ## 00:38:49 ## Note: changes to the omero.jvmcfg properties 00:38:49 ## will *not* be reflected in the compiled server 00:38:49 ## since they are defined in a Python file. 00:38:49 ############################################# 00:38:49 ## (For documentation only) 00:38:49 # Memory strategy which will be used by default. 00:38:49 # Options include: percent, manual 00:38:49 omero.jvmcfg.strategy=percent 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Explicit value for the `-Xmx` argument, e.g. 00:38:49 # "1g" 00:38:49 omero.jvmcfg.heap_size= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Explicit value for the MaxPermSize argument 00:38:49 # to the JVM, e.g. "500M". Ignored for Java8+ 00:38:49 omero.jvmcfg.perm_gen= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Toggles on or off heap dumps on OOMs. Default is "off". 00:38:49 # The special value "tmp" will create the heap dumps in 00:38:49 # your temp directory. 00:38:49 omero.jvmcfg.heap_dump= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Used only by the percent strategy. An integer between 0 00:38:49 # and 100 which is the percent of active memory that will 00:38:49 # be used by the service. 00:38:49 omero.jvmcfg.percent= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Contains other parameters which should be passed to the 00:38:49 # JVM. The value of "append" is treated as if it were on 00:38:49 # the command line so will be separated on whitespace. 00:38:49 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:38:49 # results in two new arguments. 00:38:49 # Note that when using `config set` from the command line 00:38:49 # one may need to give a prior `--` option to prevent a value 00:38:49 # starting with `-` from already being parsed as an option, 00:38:49 # and values may need quoting to prevent whitespace or other 00:38:49 # significant characters from being interpreted prematurely. 00:38:49 00:38:49 omero.jvmcfg.append= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Manual override of the total system memory that 00:38:49 # OMERO will *think* is present on the local OS (MB). 00:38:49 # If unset, an attempt will be made to detect the actual 00:38:49 # amount: first by using the Python library `psutil` and 00:38:49 # if that is not installed, by running a Java tool. If 00:38:49 # neither works, 4.0GB is assumed. 00:38:49 omero.jvmcfg.system_memory= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Suggestion for strategies as to the minimum memory 00:38:49 # that they will use for calculating JVM settings (MB). 00:38:49 omero.jvmcfg.min_system_memory=3414 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Suggestion for strategies as to the maximum memory 00:38:49 # that they will use for calculating JVM settings (MB). 00:38:49 omero.jvmcfg.max_system_memory=48000 00:38:49 00:38:49 00:38:49 ############################################# 00:38:49 ## Ice overrides 00:38:49 ## 00:38:49 ## Though not used directly by OMERO, a number 00:38:49 ## of properties prefixed with "Ice.*" will 00:38:49 ## alter the behavior of the OMERO runtime 00:38:49 ## by configuring the Ice communicators. For a 00:38:49 ## full listing see: 00:38:49 ## 00:38:49 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:38:49 ## For more information see 00:38:49 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:38:49 ############################################# 00:38:49 00:38:49 # Disable IPv6 by setting to 0. Only needed in 00:38:49 # certain situations. 00:38:49 Ice.IPv6=1 00:38:49 00:38:49 # Glacier2Template IceSSL defaults and overrides, 00:38:49 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:38:49 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:38:49 # update the corresponding IceSSL. property. 00:38:49 omero.glacier2.IceSSL= 00:38:49 00:38:49 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:38:49 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:38:49 # Glacier2Template SSL allowed cipher suites 00:38:49 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:38:49 # Glacier2Template SSL verification requirements 00:38:49 omero.glacier2.IceSSL.VerifyPeer=0 00:38:49 # Glacier2Template SSL allowed protocols 00:38:49 omero.glacier2.IceSSL.Protocols=tls1 00:38:49 00:38:49 # Override the default set of OMERO services. 00:38:49 # For example, to run OMERO.server with Blitz and Tables only 00:38:49 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:38:49 # set this to ``master:Blitz-0,Tables-0``. 00:38:49 # Also use this to distribute OMERO services across multiple nodes, 00:38:49 # for example: 00:38:49 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:38:49 # See 00:38:49 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:38:49 omero.server.nodedescriptors= 00:38:49 00:38:49 ############################################# 00:38:49 ## Darwin (OS X) specific defaults for templated configuration files only. 00:38:49 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:38:49 ## file. 00:38:49 ## Do not set these properties in ``omero config``, instead set the original 00:38:49 ## ``xxx.yyy`` property 00:38:49 ############################################# 00:38:49 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:38:49 00:38:49 00:38:49 00:38:49 ############################################# 00:38:49 ## Server product name for release artifacts 00:38:49 ############################################# 00:38:49 product.name=OMERO.server 00:38:49 00:38:49 ############################################# 00:38:49 ### Properties below this marker are ignored by 00:38:49 ### omero.install.config_parser.PropertyParser 00:38:49 ### END 00:38:49 00:38:49 ############################################# 00:38:49 ## Library versions 00:38:49 ############################################# 00:38:49 ## 00:38:49 versions.findbugs=1.2.1 00:38:49 versions.ice36=3.6.5 00:38:49 versions.ice36_lib=36 00:38:49 ## internal 00:38:49 versions.omeroshares36=3.6.3 00:38:49 versions.omeromock36=3.6.3 00:38:49 versions.icedb36=3.6.3 00:38:49 versions.ipython=1.2.1 00:38:49 00:38:49 versions.janino=2.5.10 00:38:49 00:38:49 versions.reportng=1.1.1 00:38:49 00:38:49 versions.testng=7.5 00:38:49 versions.velocity=1.4 00:38:49 00:38:49 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:38:49 versions.omero-scripts-url=${versions.omero-pypi} 00:38:49 00:38:49 ### 00:38:49 ### Appended Values 00:38:49 ### 00:38:49 00:38:49 ## Internal dependencies' 00:38:49 + echo '## 00:38:49 ## omero.properties 00:38:49 ## ---------------- 00:38:49 ## 00:38:49 ## DO NOT EDIT! 00:38:49 ## 00:38:49 ## 00:38:49 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:38:49 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:38:49 ## at compile time! 00:38:49 ## 00:38:49 ## For an overview of these properties, see 00:38:49 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:38:49 ## 00:38:49 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:38:49 00:38:49 # Comma separated list of Ice transports available to clients. The default 00:38:49 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:38:49 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:38:49 # will prevent all non-encrypted connections to the OMERO server. 00:38:49 # 00:38:49 # Additionally, there are two experimental values for using websockets: 00:38:49 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:38:49 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:38:49 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:38:49 # 00:38:49 # Note: When using websockets behind a web server like nginx, additional 00:38:49 # configuration may be needed. 00:38:49 omero.client.icetransports=ssl,tcp 00:38:49 00:38:49 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:38:49 # server 00:38:49 omero.ports.prefix= 00:38:49 00:38:49 # The Glacier2 SSL port number to use 00:38:49 omero.ports.ssl=4064 00:38:49 00:38:49 # The Glacier2 TCP port number to use (unencrypted) 00:38:49 omero.ports.tcp=4063 00:38:49 00:38:49 # The Glacier2 WSS port number to use 00:38:49 omero.ports.wss=4066 00:38:49 00:38:49 # The Glacier2 WS port number to use (unencrypted) 00:38:49 omero.ports.ws=4065 00:38:49 00:38:49 # The IceGrid registry port number to use 00:38:49 omero.ports.registry=4061 00:38:49 00:38:49 ############################################# 00:38:49 ## JVM configuration 00:38:49 ## 00:38:49 ## Note: changes to the omero.jvmcfg properties 00:38:49 ## will *not* be reflected in the compiled server 00:38:49 ## since they are defined in a Python file. 00:38:49 ############################################# 00:38:49 ## (For documentation only) 00:38:49 # Memory strategy which will be used by default. 00:38:49 # Options include: percent, manual 00:38:49 omero.jvmcfg.strategy=percent 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Explicit value for the `-Xmx` argument, e.g. 00:38:49 # "1g" 00:38:49 omero.jvmcfg.heap_size= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Explicit value for the MaxPermSize argument 00:38:49 # to the JVM, e.g. "500M". Ignored for Java8+ 00:38:49 omero.jvmcfg.perm_gen= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Toggles on or off heap dumps on OOMs. Default is "off". 00:38:49 # The special value "tmp" will create the heap dumps in 00:38:49 # your temp directory. 00:38:49 omero.jvmcfg.heap_dump= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Used only by the percent strategy. An integer between 0 00:38:49 # and 100 which is the percent of active memory that will 00:38:49 # be used by the service. 00:38:49 omero.jvmcfg.percent= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Contains other parameters which should be passed to the 00:38:49 # JVM. The value of "append" is treated as if it were on 00:38:49 # the command line so will be separated on whitespace. 00:38:49 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:38:49 # results in two new arguments. 00:38:49 # Note that when using `config set` from the command line 00:38:49 # one may need to give a prior `--` option to prevent a value 00:38:49 # starting with `-` from already being parsed as an option, 00:38:49 # and values may need quoting to prevent whitespace or other 00:38:49 # significant characters from being interpreted prematurely. 00:38:49 00:38:49 omero.jvmcfg.append= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Manual override of the total system memory that 00:38:49 # OMERO will *think* is present on the local OS (MB). 00:38:49 # If unset, an attempt will be made to detect the actual 00:38:49 # amount: first by using the Python library `psutil` and 00:38:49 # if that is not installed, by running a Java tool. If 00:38:49 # neither works, 4.0GB is assumed. 00:38:49 omero.jvmcfg.system_memory= 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Suggestion for strategies as to the minimum memory 00:38:49 # that they will use for calculating JVM settings (MB). 00:38:49 omero.jvmcfg.min_system_memory=3414 00:38:49 00:38:49 ## (For documentation only) 00:38:49 # Suggestion for strategies as to the maximum memory 00:38:49 # that they will use for calculating JVM settings (MB). 00:38:49 omero.jvmcfg.max_system_memory=48000 00:38:49 00:38:49 00:38:49 ############################################# 00:38:49 ## Ice overrides 00:38:49 ## 00:38:49 ## Though not used directly by OMERO, a number 00:38:49 ## of properties prefixed with "Ice.*" will 00:38:49 ## alter the behavior of the OMERO runtime 00:38:49 ## by configuring the Ice communicators. For a 00:38:49 ## full listing see: 00:38:49 ## 00:38:49 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:38:49 ## For more information see 00:38:49 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:38:49 ############################################# 00:38:49 00:38:49 # Disable IPv6 by setting to 0. Only needed in 00:38:49 # certain situations. 00:38:49 Ice.IPv6=1 00:38:49 00:38:49 # Glacier2Template IceSSL defaults and overrides, 00:38:49 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:38:49 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:38:49 # update the corresponding IceSSL. property. 00:38:49 omero.glacier2.IceSSL= 00:38:49 00:38:49 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:38:49 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:38:49 # Glacier2Template SSL allowed cipher suites 00:38:49 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:38:49 # Glacier2Template SSL verification requirements 00:38:49 omero.glacier2.IceSSL.VerifyPeer=0 00:38:49 # Glacier2Template SSL allowed protocols 00:38:49 omero.glacier2.IceSSL.Protocols=tls1 00:38:49 00:38:49 # Override the default set of OMERO services. 00:38:49 # For example, to run OMERO.server with Blitz and Tables only 00:38:49 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:38:49 # set this to ``master:Blitz-0,Tables-0``. 00:38:49 # Also use this to distribute OMERO services across multiple nodes, 00:38:49 # for example: 00:38:49 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:38:49 # See 00:38:49 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:38:49 omero.server.nodedescriptors= 00:38:49 00:38:49 ############################################# 00:38:49 ## Darwin (OS X) specific defaults for templated configuration files only. 00:38:49 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:38:49 ## file. 00:38:49 ## Do not set these properties in ``omero config``, instead set the original 00:38:49 ## ``xxx.yyy`` property 00:38:49 ############################################# 00:38:49 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:38:49 00:38:49 00:38:49 00:38:49 ############################################# 00:38:49 ## Server product name for release artifacts 00:38:49 ############################################# 00:38:49 product.name=OMERO.server 00:38:49 00:38:49 ############################################# 00:38:49 ### Properties below this marker are ignored by 00:38:49 ### omero.install.config_parser.PropertyParser 00:38:49 ### END 00:38:49 00:38:49 ############################################# 00:38:49 ## Library versions 00:38:49 ############################################# 00:38:49 ## 00:38:49 versions.findbugs=1.2.1 00:38:49 versions.ice36=3.6.5 00:38:49 versions.ice36_lib=36 00:38:49 ## internal 00:38:49 versions.omeroshares36=3.6.3 00:38:49 versions.omeromock36=3.6.3 00:38:49 versions.icedb36=3.6.3 00:38:49 versions.ipython=1.2.1 00:38:49 00:38:49 versions.janino=2.5.10 00:38:49 00:38:49 versions.reportng=1.1.1 00:38:49 00:38:49 versions.testng=7.5 00:38:49 versions.velocity=1.4 00:38:49 00:38:49 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:38:49 versions.omero-scripts-url=${versions.omero-pypi} 00:38:49 00:38:49 ### 00:38:49 ### Appended Values 00:38:49 ### 00:38:49 00:38:49 ## Internal dependencies' 00:38:49 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 00:38:49 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 00:38:49 + echo versions.scripts-prefix= 00:38:49 + echo versions.scripts=merge_ci 00:38:49 + cat /home/omero/workspace/OMERO-push/version.properties 00:38:49 + git commit -a -m 'Add version.properties to etc/omero.properties' 00:38:49 [detached HEAD 3ee6da43de] Add version.properties to etc/omero.properties 00:38:49 1 file changed, 47 insertions(+), 7 deletions(-) 00:38:49 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 00:38:51 To github.com:snoopycrimecop/openmicroscopy.git 00:38:51 + 0990dfa8bc...3ee6da43de HEAD -> merge_ci (forced update) 00:38:51 Finished: SUCCESS