12:56:55 Started by upstream project "Trigger" build number 48 12:56:55 originally caused by: 12:56:55 Started by user devspace 12:56:55 Running as SYSTEM 12:56:55 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 12:56:55 The recommended git tool is: NONE 12:56:55 No credentials specified 12:56:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 12:56:55 Fetching changes from the remote Git repository 12:56:55 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 12:56:55 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 12:56:55 > git --version # timeout=10 12:56:55 > git --version # 'git version 2.52.0' 12:56:55 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 12:57:00 > git rev-parse origin/develop^{commit} # timeout=10 12:57:00 Checking out Revision d28c232d2291ac13a30da56b30f93415da1ea74e (origin/develop) 12:57:00 > git config core.sparsecheckout # timeout=10 12:57:00 > git checkout -f d28c232d2291ac13a30da56b30f93415da1ea74e # timeout=30 12:57:04 Commit message: "Merge pull request #6476 from pwalczysko/rawpixelstore" 12:57:04 > git rev-list --no-walk d28c232d2291ac13a30da56b30f93415da1ea74e # timeout=10 12:57:04 Cleaning workspace 12:57:04 > git rev-parse --verify HEAD # timeout=10 12:57:04 Resetting working tree 12:57:04 > git reset --hard # timeout=10 12:57:04 > git clean -fdx # timeout=10 12:57:04 Copied 1 artifact from "OMERO-python-superbuild-build" build number 33 12:57:04 [OMERO-push] $ /bin/bash -xe /tmp/jenkins13208597300075992045.sh 12:57:04 + python3.11 -mvenv venv 12:57:07 + source /home/omero/workspace/OMERO-push/venv/bin/activate 12:57:07 ++ deactivate nondestructive 12:57:07 ++ '[' -n '' ']' 12:57:07 ++ '[' -n '' ']' 12:57:07 ++ hash -r 12:57:07 ++ '[' -n '' ']' 12:57:07 ++ unset VIRTUAL_ENV 12:57:07 ++ unset VIRTUAL_ENV_PROMPT 12:57:07 ++ '[' '!' nondestructive = nondestructive ']' 12:57:07 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 12:57:07 ++ export VIRTUAL_ENV 12:57:07 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:57:07 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:57:07 ++ export PATH 12:57:07 ++ '[' -n '' ']' 12:57:07 ++ '[' -z '' ']' 12:57:07 ++ _OLD_VIRTUAL_PS1= 12:57:07 ++ PS1='(venv) ' 12:57:07 ++ export PS1 12:57:07 ++ VIRTUAL_ENV_PROMPT='(venv) ' 12:57:07 ++ export VIRTUAL_ENV_PROMPT 12:57:07 ++ hash -r 12:57:07 + pip install -U pip 12:57:11 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1) 12:57:11 + pip install -U scc 12:57:12 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 12:57:12 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 12:57:12 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 12:57:12 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 12:57:12 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 12:57:12 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 12:57:12 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 12:57:12 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 12:57:12 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 12:57:12 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 12:57:12 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 12:57:12 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 12:57:12 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 12:57:12 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 12:57:12 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 12:57:12 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 12:57:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 12:57:12 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 12:57:12 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 12:57:12 + test -e src 12:57:12 + cd src 12:57:12 ++ git config github.user 12:57:12 + user=snoopycrimecop 12:57:12 + scc merge develop --no-ask --reset --shallow -S success-only 12:57:19 2026-08-07 12:57:19,428 [ scc.merge] INFO Merging Pull Request(s) based on develop 12:57:19 2026-08-07 12:57:19,429 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 12:57:19 2026-08-07 12:57:19,429 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 12:57:19 2026-08-07 12:57:19,429 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 12:57:19 2026-08-07 12:57:19,429 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 12:57:19 2026-08-07 12:57:19,429 [ scc.merge] INFO Excluding Pull Request(s) without successful status 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO Repository: ome/openmicroscopy 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO Excluded PRs: 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure) 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment) 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO Already up to date. 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO Merged PRs: 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py' 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO - PR 6477 pwalczysko 'OmeroWeb suite: test_rendering and pyramids' 12:57:41 2026-08-07 12:57:41,518 [ scc.merge] INFO 12:57:41 + cp etc/omero.properties etc/omero.properties.bak 12:57:41 + rm etc/omero.properties 12:57:41 + touch etc/omero.properties 12:57:41 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 12:57:41 + ne=249 12:57:41 ++ sed -n 1,249p etc/omero.properties.bak 12:57:41 + line='## 12:57:41 ## omero.properties 12:57:41 ## ---------------- 12:57:41 ## 12:57:41 ## DO NOT EDIT! 12:57:41 ## 12:57:41 ## 12:57:41 ## Any of these properties can be altered by using `omero config`. MODIFYING 12:57:41 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 12:57:41 ## at compile time! 12:57:41 ## 12:57:41 ## For an overview of these properties, see 12:57:41 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 12:57:41 ## 12:57:41 ## Properties marked with "DEVELOPMENT" should not be used in production. 12:57:41 12:57:41 # Comma separated list of Ice transports available to clients. The default 12:57:41 # value ("ssl,tcp") instructs Ice to open the ports specified by the 12:57:41 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 12:57:41 # will prevent all non-encrypted connections to the OMERO server. 12:57:41 # 12:57:41 # Additionally, there are two experimental values for using websockets: 12:57:41 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 12:57:41 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 12:57:41 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 12:57:41 # 12:57:41 # Note: When using websockets behind a web server like nginx, additional 12:57:41 # configuration may be needed. 12:57:41 omero.client.icetransports=ssl,tcp 12:57:41 12:57:41 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 12:57:41 # server 12:57:41 omero.ports.prefix= 12:57:41 12:57:41 # The Glacier2 SSL port number to use 12:57:41 omero.ports.ssl=4064 12:57:41 12:57:41 # The Glacier2 TCP port number to use (unencrypted) 12:57:41 omero.ports.tcp=4063 12:57:41 12:57:41 # The Glacier2 WSS port number to use 12:57:41 omero.ports.wss=4066 12:57:41 12:57:41 # The Glacier2 WS port number to use (unencrypted) 12:57:41 omero.ports.ws=4065 12:57:41 12:57:41 # The IceGrid registry port number to use 12:57:41 omero.ports.registry=4061 12:57:41 12:57:41 ############################################# 12:57:41 ## JVM configuration 12:57:41 ## 12:57:41 ## Note: changes to the omero.jvmcfg properties 12:57:41 ## will *not* be reflected in OMERO.server 12:57:41 ## since they are defined in OMERO.py. 12:57:41 ############################################# 12:57:41 ## (For documentation only) 12:57:41 # Memory strategy which will be used by default. 12:57:41 # Options include: percent, manual 12:57:41 omero.jvmcfg.strategy=percent 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Explicit value for the `-Xmx` argument, e.g. 12:57:41 # "1g" 12:57:41 omero.jvmcfg.heap_size= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Explicit value for the MaxPermSize argument 12:57:41 # to the JVM, e.g. "500M". Ignored for Java8+ 12:57:41 omero.jvmcfg.perm_gen= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Toggles on or off heap dumps on OOMs. Default is "off". 12:57:41 # The special value "tmp" will create the heap dumps in 12:57:41 # your temp directory. 12:57:41 omero.jvmcfg.heap_dump= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Used only by the percent strategy. An integer between 0 12:57:41 # and 100 which is the percent of active memory that will 12:57:41 # be used by the service. 12:57:41 omero.jvmcfg.percent= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Contains other parameters which should be passed to the 12:57:41 # JVM. The value of "append" is treated as if it were on 12:57:41 # the command line so will be separated on whitespace. 12:57:41 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 12:57:41 # results in two new arguments. 12:57:41 # Note that when using `config set` from the command line 12:57:41 # one may need to give a prior `--` option to prevent a value 12:57:41 # starting with `-` from already being parsed as an option, 12:57:41 # and values may need quoting to prevent whitespace or other 12:57:41 # significant characters from being interpreted prematurely. 12:57:41 12:57:41 omero.jvmcfg.append= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Manual override of the total system memory that 12:57:41 # OMERO will *think* is present on the local OS (MB). 12:57:41 # If unset, an attempt will be made to detect the actual 12:57:41 # amount: first by using the Python library `psutil` and 12:57:41 # if that is not installed, by running a Java tool. If 12:57:41 # neither works, 4.0GB is assumed. 12:57:41 omero.jvmcfg.system_memory= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Suggestion for strategies as to the minimum memory 12:57:41 # that they will use for calculating JVM settings (MB). 12:57:41 omero.jvmcfg.min_system_memory=3414 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Suggestion for strategies as to the maximum memory 12:57:41 # that they will use for calculating JVM settings (MB). 12:57:41 omero.jvmcfg.max_system_memory=48000 12:57:41 12:57:41 12:57:41 ############################################# 12:57:41 ## Logging properties 12:57:41 ## 12:57:41 ## Note: changes to the default omero.logging values in 12:57:41 ## this file will *not* be reflected in OMERO.server 12:57:41 ## since they are defined in OMERO.py 12:57:41 ############################################# 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Relative server directory where the log files should be stored. 12:57:41 omero.logging.directory=var/log/ 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Whether the server log files should be rotated at a certain time 12:57:41 # interval. If true, log files will be rolled over at midnight. 12:57:41 # Otherwise, log files will be rolled over at a predetermined size, 12:57:41 # see omero.logging.logsize for more information. 12:57:41 omero.logging.timedlog=false 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # If omero.logging.timedlog is false or unset, specifies the 12:57:41 # maximum size of the server log files in bytes above which a 12:57:41 # new log file should be created. 12:57:41 omero.logging.logsize=5000000 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # If omero.logging.timedlog is false or unset, specifies the 12:57:41 # number of old server log files that should be kept. Old log 12:57:41 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 12:57:41 omero.logging.lognum=9 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Specifies the threshold for the Python servers log files. Logging messages 12:57:41 # which are less severe than this value will be ignored. For a list of 12:57:41 # available values, see https://docs.python.org/3/library/logging.html#levels. 12:57:41 omero.logging.level=20 12:57:41 12:57:41 ############################################# 12:57:41 ## Ice overrides 12:57:41 ## 12:57:41 ## Though not used directly by OMERO, a number 12:57:41 ## of properties prefixed with "Ice.*" will 12:57:41 ## alter the behavior of the OMERO runtime 12:57:41 ## by configuring the Ice communicators. For a 12:57:41 ## full listing see: 12:57:41 ## 12:57:41 ## http://doc.zeroc.com/display/Ice/Property+Reference 12:57:41 ## For more information see 12:57:41 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 12:57:41 ############################################# 12:57:41 12:57:41 # Disable IPv6 by setting to 0. Only needed in 12:57:41 # certain situations. 12:57:41 Ice.IPv6=1 12:57:41 12:57:41 # Glacier2Template IceSSL defaults and overrides, 12:57:41 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 12:57:41 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 12:57:41 # update the corresponding IceSSL. property. 12:57:41 omero.glacier2.IceSSL= 12:57:41 12:57:41 # Glacier2Template SSL maximum allowed protocol (mac bug) 12:57:41 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 12:57:41 # Glacier2Template SSL allowed cipher suites 12:57:41 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 12:57:41 # Glacier2Template SSL verification requirements 12:57:41 omero.glacier2.IceSSL.VerifyPeer=0 12:57:41 # Glacier2Template SSL allowed protocols 12:57:41 omero.glacier2.IceSSL.Protocols=tls1 12:57:41 12:57:41 # Override the default set of OMERO services. 12:57:41 # For example, to run OMERO.server with Blitz and Tables only 12:57:41 # (i.e. disable Processor, DropBox, Indexer, PixelData) 12:57:41 # set this to ``master:Blitz-0,Tables-0``. 12:57:41 # Also use this to distribute OMERO services across multiple nodes, 12:57:41 # for example: 12:57:41 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 12:57:41 # See 12:57:41 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 12:57:41 omero.server.nodedescriptors= 12:57:41 12:57:41 ############################################# 12:57:41 ## Darwin (OS X) specific defaults for templated configuration files only. 12:57:41 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 12:57:41 ## file. 12:57:41 ## Do not set these properties in ``omero config``, instead set the original 12:57:41 ## ``xxx.yyy`` property 12:57:41 ############################################# 12:57:41 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Name of the Python module to use when starting the Tables service 12:57:41 omero.tables.module=runTables 12:57:41 12:57:41 ############################################# 12:57:41 ## Server product name for release artifacts 12:57:41 ############################################# 12:57:41 product.name=OMERO.server 12:57:41 12:57:41 ############################################# 12:57:41 ### Properties below this marker are ignored by 12:57:41 ### omero.install.config_parser.PropertyParser 12:57:41 ### END 12:57:41 12:57:41 ############################################# 12:57:41 ## Library versions 12:57:41 ############################################# 12:57:41 ## 12:57:41 versions.findbugs=1.2.1 12:57:41 versions.ice36=3.6.5 12:57:41 versions.ice36_lib=36 12:57:41 ## internal 12:57:41 versions.omeroshares36=3.6.3 12:57:41 versions.omeromock36=3.6.3 12:57:41 versions.icedb36=3.6.3 12:57:41 versions.ipython=1.2.1 12:57:41 12:57:41 versions.janino=2.5.10 12:57:41 12:57:41 versions.reportng=1.1.1 12:57:41 12:57:41 versions.testng=7.5 12:57:41 versions.velocity=1.4 12:57:41 12:57:41 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 12:57:41 versions.omero-scripts-url=${versions.omero-pypi} 12:57:41 12:57:41 ### 12:57:41 ### Appended Values 12:57:41 ### 12:57:41 12:57:41 ## Internal dependencies' 12:57:41 + echo '## 12:57:41 ## omero.properties 12:57:41 ## ---------------- 12:57:41 ## 12:57:41 ## DO NOT EDIT! 12:57:41 ## 12:57:41 ## 12:57:41 ## Any of these properties can be altered by using `omero config`. MODIFYING 12:57:41 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 12:57:41 ## at compile time! 12:57:41 ## 12:57:41 ## For an overview of these properties, see 12:57:41 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 12:57:41 ## 12:57:41 ## Properties marked with "DEVELOPMENT" should not be used in production. 12:57:41 12:57:41 # Comma separated list of Ice transports available to clients. The default 12:57:41 # value ("ssl,tcp") instructs Ice to open the ports specified by the 12:57:41 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 12:57:41 # will prevent all non-encrypted connections to the OMERO server. 12:57:41 # 12:57:41 # Additionally, there are two experimental values for using websockets: 12:57:41 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 12:57:41 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 12:57:41 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 12:57:41 # 12:57:41 # Note: When using websockets behind a web server like nginx, additional 12:57:41 # configuration may be needed. 12:57:41 omero.client.icetransports=ssl,tcp 12:57:41 12:57:41 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 12:57:41 # server 12:57:41 omero.ports.prefix= 12:57:41 12:57:41 # The Glacier2 SSL port number to use 12:57:41 omero.ports.ssl=4064 12:57:41 12:57:41 # The Glacier2 TCP port number to use (unencrypted) 12:57:41 omero.ports.tcp=4063 12:57:41 12:57:41 # The Glacier2 WSS port number to use 12:57:41 omero.ports.wss=4066 12:57:41 12:57:41 # The Glacier2 WS port number to use (unencrypted) 12:57:41 omero.ports.ws=4065 12:57:41 12:57:41 # The IceGrid registry port number to use 12:57:41 omero.ports.registry=4061 12:57:41 12:57:41 ############################################# 12:57:41 ## JVM configuration 12:57:41 ## 12:57:41 ## Note: changes to the omero.jvmcfg properties 12:57:41 ## will *not* be reflected in OMERO.server 12:57:41 ## since they are defined in OMERO.py. 12:57:41 ############################################# 12:57:41 ## (For documentation only) 12:57:41 # Memory strategy which will be used by default. 12:57:41 # Options include: percent, manual 12:57:41 omero.jvmcfg.strategy=percent 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Explicit value for the `-Xmx` argument, e.g. 12:57:41 # "1g" 12:57:41 omero.jvmcfg.heap_size= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Explicit value for the MaxPermSize argument 12:57:41 # to the JVM, e.g. "500M". Ignored for Java8+ 12:57:41 omero.jvmcfg.perm_gen= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Toggles on or off heap dumps on OOMs. Default is "off". 12:57:41 # The special value "tmp" will create the heap dumps in 12:57:41 # your temp directory. 12:57:41 omero.jvmcfg.heap_dump= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Used only by the percent strategy. An integer between 0 12:57:41 # and 100 which is the percent of active memory that will 12:57:41 # be used by the service. 12:57:41 omero.jvmcfg.percent= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Contains other parameters which should be passed to the 12:57:41 # JVM. The value of "append" is treated as if it were on 12:57:41 # the command line so will be separated on whitespace. 12:57:41 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 12:57:41 # results in two new arguments. 12:57:41 # Note that when using `config set` from the command line 12:57:41 # one may need to give a prior `--` option to prevent a value 12:57:41 # starting with `-` from already being parsed as an option, 12:57:41 # and values may need quoting to prevent whitespace or other 12:57:41 # significant characters from being interpreted prematurely. 12:57:41 12:57:41 omero.jvmcfg.append= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Manual override of the total system memory that 12:57:41 # OMERO will *think* is present on the local OS (MB). 12:57:41 # If unset, an attempt will be made to detect the actual 12:57:41 # amount: first by using the Python library `psutil` and 12:57:41 # if that is not installed, by running a Java tool. If 12:57:41 # neither works, 4.0GB is assumed. 12:57:41 omero.jvmcfg.system_memory= 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Suggestion for strategies as to the minimum memory 12:57:41 # that they will use for calculating JVM settings (MB). 12:57:41 omero.jvmcfg.min_system_memory=3414 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Suggestion for strategies as to the maximum memory 12:57:41 # that they will use for calculating JVM settings (MB). 12:57:41 omero.jvmcfg.max_system_memory=48000 12:57:41 12:57:41 12:57:41 ############################################# 12:57:41 ## Logging properties 12:57:41 ## 12:57:41 ## Note: changes to the default omero.logging values in 12:57:41 ## this file will *not* be reflected in OMERO.server 12:57:41 ## since they are defined in OMERO.py 12:57:41 ############################################# 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Relative server directory where the log files should be stored. 12:57:41 omero.logging.directory=var/log/ 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Whether the server log files should be rotated at a certain time 12:57:41 # interval. If true, log files will be rolled over at midnight. 12:57:41 # Otherwise, log files will be rolled over at a predetermined size, 12:57:41 # see omero.logging.logsize for more information. 12:57:41 omero.logging.timedlog=false 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # If omero.logging.timedlog is false or unset, specifies the 12:57:41 # maximum size of the server log files in bytes above which a 12:57:41 # new log file should be created. 12:57:41 omero.logging.logsize=5000000 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # If omero.logging.timedlog is false or unset, specifies the 12:57:41 # number of old server log files that should be kept. Old log 12:57:41 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 12:57:41 omero.logging.lognum=9 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Specifies the threshold for the Python servers log files. Logging messages 12:57:41 # which are less severe than this value will be ignored. For a list of 12:57:41 # available values, see https://docs.python.org/3/library/logging.html#levels. 12:57:41 omero.logging.level=20 12:57:41 12:57:41 ############################################# 12:57:41 ## Ice overrides 12:57:41 ## 12:57:41 ## Though not used directly by OMERO, a number 12:57:41 ## of properties prefixed with "Ice.*" will 12:57:41 ## alter the behavior of the OMERO runtime 12:57:41 ## by configuring the Ice communicators. For a 12:57:41 ## full listing see: 12:57:41 ## 12:57:41 ## http://doc.zeroc.com/display/Ice/Property+Reference 12:57:41 ## For more information see 12:57:41 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 12:57:41 ############################################# 12:57:41 12:57:41 # Disable IPv6 by setting to 0. Only needed in 12:57:41 # certain situations. 12:57:41 Ice.IPv6=1 12:57:41 12:57:41 # Glacier2Template IceSSL defaults and overrides, 12:57:41 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 12:57:41 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 12:57:41 # update the corresponding IceSSL. property. 12:57:41 omero.glacier2.IceSSL= 12:57:41 12:57:41 # Glacier2Template SSL maximum allowed protocol (mac bug) 12:57:41 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 12:57:41 # Glacier2Template SSL allowed cipher suites 12:57:41 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 12:57:41 # Glacier2Template SSL verification requirements 12:57:41 omero.glacier2.IceSSL.VerifyPeer=0 12:57:41 # Glacier2Template SSL allowed protocols 12:57:41 omero.glacier2.IceSSL.Protocols=tls1 12:57:41 12:57:41 # Override the default set of OMERO services. 12:57:41 # For example, to run OMERO.server with Blitz and Tables only 12:57:41 # (i.e. disable Processor, DropBox, Indexer, PixelData) 12:57:41 # set this to ``master:Blitz-0,Tables-0``. 12:57:41 # Also use this to distribute OMERO services across multiple nodes, 12:57:41 # for example: 12:57:41 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 12:57:41 # See 12:57:41 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 12:57:41 omero.server.nodedescriptors= 12:57:41 12:57:41 ############################################# 12:57:41 ## Darwin (OS X) specific defaults for templated configuration files only. 12:57:41 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 12:57:41 ## file. 12:57:41 ## Do not set these properties in ``omero config``, instead set the original 12:57:41 ## ``xxx.yyy`` property 12:57:41 ############################################# 12:57:41 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 12:57:41 12:57:41 ## (For documentation only) 12:57:41 # Name of the Python module to use when starting the Tables service 12:57:41 omero.tables.module=runTables 12:57:41 12:57:41 ############################################# 12:57:41 ## Server product name for release artifacts 12:57:41 ############################################# 12:57:41 product.name=OMERO.server 12:57:41 12:57:41 ############################################# 12:57:41 ### Properties below this marker are ignored by 12:57:41 ### omero.install.config_parser.PropertyParser 12:57:41 ### END 12:57:41 12:57:41 ############################################# 12:57:41 ## Library versions 12:57:41 ############################################# 12:57:41 ## 12:57:41 versions.findbugs=1.2.1 12:57:41 versions.ice36=3.6.5 12:57:41 versions.ice36_lib=36 12:57:41 ## internal 12:57:41 versions.omeroshares36=3.6.3 12:57:41 versions.omeromock36=3.6.3 12:57:41 versions.icedb36=3.6.3 12:57:41 versions.ipython=1.2.1 12:57:41 12:57:41 versions.janino=2.5.10 12:57:41 12:57:41 versions.reportng=1.1.1 12:57:41 12:57:41 versions.testng=7.5 12:57:41 versions.velocity=1.4 12:57:41 12:57:41 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 12:57:41 versions.omero-scripts-url=${versions.omero-pypi} 12:57:41 12:57:41 ### 12:57:41 ### Appended Values 12:57:41 ### 12:57:41 12:57:41 ## Internal dependencies' 12:57:41 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 12:57:41 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 12:57:41 + echo versions.scripts-prefix= 12:57:41 + echo versions.scripts=merge_ci 12:57:41 + cat /home/omero/workspace/OMERO-push/version.properties 12:57:41 + git commit -a -m 'Add version.properties to etc/omero.properties' 12:57:41 [detached HEAD 31b44fa9ea] Add version.properties to etc/omero.properties 12:57:41 1 file changed, 46 insertions(+), 6 deletions(-) 12:57:41 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 12:57:45 To github.com:snoopycrimecop/openmicroscopy.git 12:57:45 + 1621d09097...31b44fa9ea HEAD -> merge_ci (forced update) 12:57:45 Finished: SUCCESS