13:39:18 Started by upstream project "Trigger" build number 89 13:39:18 originally caused by: 13:39:18 Started by timer 13:39:18 Running as SYSTEM 13:39:18 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 13:39:18 The recommended git tool is: NONE 13:39:18 No credentials specified 13:39:18 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 13:39:18 Fetching changes from the remote Git repository 13:39:18 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 13:39:18 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 13:39:18 > git --version # timeout=10 13:39:18 > git --version # 'git version 2.52.0' 13:39:18 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 13:39:24 > git rev-parse origin/develop^{commit} # timeout=10 13:39:24 Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop) 13:39:24 > git config core.sparsecheckout # timeout=10 13:39:24 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30 13:39:50 Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix" 13:39:50 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10 13:39:50 Cleaning workspace 13:39:50 > git rev-parse --verify HEAD # timeout=10 13:39:50 Resetting working tree 13:39:50 > git reset --hard # timeout=10 13:39:52 > git clean -fdx # timeout=10 13:39:52 Copied 1 artifact from "OMERO-python-superbuild-build" build number 63 13:39:52 [OMERO-push] $ /bin/bash -xe /tmp/jenkins13830601199390877829.sh 13:39:52 + python3.11 -mvenv venv 13:39:56 + source /home/omero/workspace/OMERO-push/venv/bin/activate 13:39:56 ++ deactivate nondestructive 13:39:56 ++ '[' -n '' ']' 13:39:56 ++ '[' -n '' ']' 13:39:56 ++ hash -r 13:39:56 ++ '[' -n '' ']' 13:39:56 ++ unset VIRTUAL_ENV 13:39:56 ++ unset VIRTUAL_ENV_PROMPT 13:39:56 ++ '[' '!' nondestructive = nondestructive ']' 13:39:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 13:39:56 ++ export VIRTUAL_ENV 13:39:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:39:56 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:39:56 ++ export PATH 13:39:56 ++ '[' -n '' ']' 13:39:56 ++ '[' -z '' ']' 13:39:56 ++ _OLD_VIRTUAL_PS1= 13:39:56 ++ PS1='(venv) ' 13:39:56 ++ export PS1 13:39:56 ++ VIRTUAL_ENV_PROMPT='(venv) ' 13:39:56 ++ export VIRTUAL_ENV_PROMPT 13:39:56 ++ hash -r 13:39:56 + pip install -U pip 13:40:03 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1) 13:40:03 + pip install -U scc 13:40:04 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 13:40:04 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 13:40:04 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 13:40:04 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 13:40:04 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 13:40:04 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 13:40:04 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 13:40:04 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 13:40:04 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 13:40:04 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 13:40:04 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 13:40:04 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 13:40:04 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 13:40:04 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 13:40:04 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 13:40:04 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 13:40:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 13:40:04 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 13:40:04 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 13:40:04 + test -e src 13:40:04 + cd src 13:40:04 ++ git config github.user 13:40:04 + user=snoopycrimecop 13:40:04 + scc merge develop --no-ask --reset --shallow -S success-only 13:40:15 2026-09-08 13:40:15,984 [ scc.merge] INFO Merging Pull Request(s) based on develop 13:40:15 2026-09-08 13:40:15,984 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 13:40:15 2026-09-08 13:40:15,984 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 13:40:15 2026-09-08 13:40:15,985 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 13:40:15 2026-09-08 13:40:15,985 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 13:40:15 2026-09-08 13:40:15,985 [ scc.merge] INFO Excluding Pull Request(s) without successful status 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO Repository: ome/openmicroscopy 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO Excluded PRs: 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO Already up to date. 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO Merged PRs: 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests' 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer' 13:40:42 2026-09-08 13:40:42,854 [ scc.merge] INFO 13:40:42 + cp etc/omero.properties etc/omero.properties.bak 13:40:42 + rm etc/omero.properties 13:40:42 + touch etc/omero.properties 13:40:42 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 13:40:42 + ne=252 13:40:42 ++ sed -n 1,252p etc/omero.properties.bak 13:40:42 + line='## 13:40:42 ## omero.properties 13:40:42 ## ---------------- 13:40:42 ## 13:40:42 ## DO NOT EDIT! 13:40:42 ## 13:40:42 ## 13:40:42 ## Any of these properties can be altered by using `omero config`. MODIFYING 13:40:42 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 13:40:42 ## at compile time! 13:40:42 ## 13:40:42 ## For an overview of these properties, see 13:40:42 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 13:40:42 ## 13:40:42 ## Properties marked with "DEVELOPMENT" should not be used in production. 13:40:42 13:40:42 # Comma separated list of Ice transports available to clients. The default 13:40:42 # value ("ssl,tcp") instructs Ice to open the ports specified by the 13:40:42 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 13:40:42 # will prevent all non-encrypted connections to the OMERO server. 13:40:42 # 13:40:42 # Additionally, there are two experimental values for using websockets: 13:40:42 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 13:40:42 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 13:40:42 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 13:40:42 # 13:40:42 # Note: When using websockets behind a web server like nginx, additional 13:40:42 # configuration may be needed. 13:40:42 omero.client.icetransports=ssl,tcp 13:40:42 13:40:42 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 13:40:42 # server 13:40:42 omero.ports.prefix= 13:40:42 13:40:42 # The Glacier2 SSL port number to use 13:40:42 omero.ports.ssl=4064 13:40:42 13:40:42 # The Glacier2 TCP port number to use (unencrypted) 13:40:42 omero.ports.tcp=4063 13:40:42 13:40:42 # The Glacier2 WSS port number to use 13:40:42 omero.ports.wss=4066 13:40:42 13:40:42 # The Glacier2 WS port number to use (unencrypted) 13:40:42 omero.ports.ws=4065 13:40:42 13:40:42 # The IceGrid registry port number to use 13:40:42 omero.ports.registry=4061 13:40:42 13:40:42 ############################################# 13:40:42 ## JVM configuration 13:40:42 ## 13:40:42 ## Note: changes to the omero.jvmcfg properties 13:40:42 ## will *not* be reflected in OMERO.server 13:40:42 ## since they are defined in OMERO.py. 13:40:42 ############################################# 13:40:42 ## (For documentation only) 13:40:42 # Memory strategy which will be used by default. 13:40:42 # Options include: percent, manual 13:40:42 omero.jvmcfg.strategy=percent 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Explicit value for the `-Xmx` argument, e.g. 13:40:42 # "1g" 13:40:42 omero.jvmcfg.heap_size= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Explicit value for the MaxPermSize argument 13:40:42 # to the JVM, e.g. "500M". Ignored for Java8+ 13:40:42 omero.jvmcfg.perm_gen= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Toggles on or off heap dumps on OOMs. Default is "off". 13:40:42 # The special value "tmp" will create the heap dumps in 13:40:42 # your temp directory. 13:40:42 omero.jvmcfg.heap_dump= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Used only by the percent strategy. An integer between 0 13:40:42 # and 100 which is the percent of active memory that will 13:40:42 # be used by the service. 13:40:42 omero.jvmcfg.percent= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Contains other parameters which should be passed to the 13:40:42 # JVM. The value of "append" is treated as if it were on 13:40:42 # the command line so will be separated on whitespace. 13:40:42 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 13:40:42 # results in two new arguments. 13:40:42 # Note that when using `config set` from the command line 13:40:42 # one may need to give a prior `--` option to prevent a value 13:40:42 # starting with `-` from already being parsed as an option, 13:40:42 # and values may need quoting to prevent whitespace or other 13:40:42 # significant characters from being interpreted prematurely. 13:40:42 13:40:42 omero.jvmcfg.append= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Manual override of the total system memory that 13:40:42 # OMERO will *think* is present on the local OS (MB). 13:40:42 # If unset, an attempt will be made to detect the actual 13:40:42 # amount: first by using the Python library `psutil` and 13:40:42 # if that is not installed, by running a Java tool. If 13:40:42 # neither works, 4.0GB is assumed. 13:40:42 omero.jvmcfg.system_memory= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Suggestion for strategies as to the minimum memory 13:40:42 # that they will use for calculating JVM settings (MB). 13:40:42 omero.jvmcfg.min_system_memory=3414 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Suggestion for strategies as to the maximum memory 13:40:42 # that they will use for calculating JVM settings (MB). 13:40:42 omero.jvmcfg.max_system_memory=48000 13:40:42 13:40:42 13:40:42 ############################################# 13:40:42 ## Logging properties 13:40:42 ## 13:40:42 ## Note: changes to the default omero.logging values in 13:40:42 ## this file will *not* be reflected in OMERO.server 13:40:42 ## since they are defined in OMERO.py 13:40:42 ############################################# 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Relative server directory where the log files should be stored. 13:40:42 omero.logging.directory=var/log/ 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Whether the server log files should be rotated at a certain time 13:40:42 # interval. If true, log files will be rolled over at midnight. 13:40:42 # Otherwise, log files will be rolled over at a predetermined size, 13:40:42 # see omero.logging.logsize for more information. 13:40:42 omero.logging.timedlog=false 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # If omero.logging.timedlog is false or unset, specifies the 13:40:42 # maximum size of the server log files in bytes above which a 13:40:42 # new log file should be created. 13:40:42 omero.logging.logsize=5000000 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # If omero.logging.timedlog is false or unset, specifies the 13:40:42 # number of old server log files that should be kept. Old log 13:40:42 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 13:40:42 omero.logging.lognum=9 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Specifies the threshold for the Python servers log files. Logging messages 13:40:42 # which are less severe than this value will be ignored. For a list of 13:40:42 # available values, see https://docs.python.org/3/library/logging.html#levels. 13:40:42 omero.logging.level=20 13:40:42 13:40:42 ############################################# 13:40:42 ## Ice overrides 13:40:42 ## 13:40:42 ## Though not used directly by OMERO, a number 13:40:42 ## of properties prefixed with "Ice.*" will 13:40:42 ## alter the behavior of the OMERO runtime 13:40:42 ## by configuring the Ice communicators. For a 13:40:42 ## full listing see: 13:40:42 ## 13:40:42 ## http://doc.zeroc.com/display/Ice/Property+Reference 13:40:42 ## For more information see 13:40:42 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 13:40:42 ############################################# 13:40:42 13:40:42 # Disable IPv6 by setting to 0. Only needed in 13:40:42 # certain situations. 13:40:42 Ice.IPv6=1 13:40:42 13:40:42 # Glacier2Template IceSSL defaults and overrides, 13:40:42 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 13:40:42 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 13:40:42 # update the corresponding IceSSL. property. 13:40:42 omero.glacier2.IceSSL= 13:40:42 13:40:42 # Glacier2Template SSL maximum allowed protocol (mac bug) 13:40:42 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 13:40:42 # Glacier2Template SSL allowed cipher suites 13:40:42 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 13:40:42 # Glacier2Template SSL verification requirements 13:40:42 omero.glacier2.IceSSL.VerifyPeer=0 13:40:42 # Glacier2Template SSL allowed protocols 13:40:42 omero.glacier2.IceSSL.Protocols=tls1 13:40:42 13:40:42 # Override the default set of OMERO services. 13:40:42 # For example, to run OMERO.server with Blitz and Tables only 13:40:42 # (i.e. disable Processor, DropBox, Indexer, PixelData) 13:40:42 # set this to ``master:Blitz-0,Tables-0``. 13:40:42 # Also use this to distribute OMERO services across multiple nodes, 13:40:42 # for example: 13:40:42 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 13:40:42 # See 13:40:42 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 13:40:42 omero.server.nodedescriptors= 13:40:42 13:40:42 ############################################# 13:40:42 ## Darwin (OS X) specific defaults for templated configuration files only. 13:40:42 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 13:40:42 ## file. 13:40:42 ## Do not set these properties in ``omero config``, instead set the original 13:40:42 ## ``xxx.yyy`` property 13:40:42 ############################################# 13:40:42 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Name of the Python module to use when starting the Tables service 13:40:42 omero.tables.module=runTables 13:40:42 13:40:42 ############################################# 13:40:42 ## Server product name for release artifacts 13:40:42 ############################################# 13:40:42 product.name=OMERO.server 13:40:42 13:40:42 ############################################# 13:40:42 ### Properties below this marker are ignored by 13:40:42 ### omero.install.config_parser.PropertyParser 13:40:42 ### END 13:40:42 13:40:42 ############################################# 13:40:42 ## Library versions 13:40:42 ############################################# 13:40:42 ## 13:40:42 versions.findbugs=1.2.1 13:40:42 versions.ice36=3.6.5 13:40:42 versions.ice36_lib=36 13:40:42 ## internal 13:40:42 versions.omeroshares36=3.6.3 13:40:42 versions.omeromock36=3.6.3 13:40:42 versions.icedb36=3.6.3 13:40:42 versions.ipython=1.2.1 13:40:42 13:40:42 versions.janino=2.5.10 13:40:42 13:40:42 versions.reportng=1.1.1 13:40:42 13:40:42 versions.testng=7.5 13:40:42 versions.velocity=1.4 13:40:42 13:40:42 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 13:40:42 versions.omero-scripts-url=${versions.omero-pypi} 13:40:42 13:40:42 # hard coded, should not be picked up by scc for now! 13:40:42 versions.omero-zarr-pixel-buffer=0.7.0-rc3 13:40:42 13:40:42 ### 13:40:42 ### Appended Values 13:40:42 ### 13:40:42 13:40:42 ## Internal dependencies' 13:40:42 + echo '## 13:40:42 ## omero.properties 13:40:42 ## ---------------- 13:40:42 ## 13:40:42 ## DO NOT EDIT! 13:40:42 ## 13:40:42 ## 13:40:42 ## Any of these properties can be altered by using `omero config`. MODIFYING 13:40:42 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 13:40:42 ## at compile time! 13:40:42 ## 13:40:42 ## For an overview of these properties, see 13:40:42 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 13:40:42 ## 13:40:42 ## Properties marked with "DEVELOPMENT" should not be used in production. 13:40:42 13:40:42 # Comma separated list of Ice transports available to clients. The default 13:40:42 # value ("ssl,tcp") instructs Ice to open the ports specified by the 13:40:42 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 13:40:42 # will prevent all non-encrypted connections to the OMERO server. 13:40:42 # 13:40:42 # Additionally, there are two experimental values for using websockets: 13:40:42 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 13:40:42 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 13:40:42 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 13:40:42 # 13:40:42 # Note: When using websockets behind a web server like nginx, additional 13:40:42 # configuration may be needed. 13:40:42 omero.client.icetransports=ssl,tcp 13:40:42 13:40:42 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 13:40:42 # server 13:40:42 omero.ports.prefix= 13:40:42 13:40:42 # The Glacier2 SSL port number to use 13:40:42 omero.ports.ssl=4064 13:40:42 13:40:42 # The Glacier2 TCP port number to use (unencrypted) 13:40:42 omero.ports.tcp=4063 13:40:42 13:40:42 # The Glacier2 WSS port number to use 13:40:42 omero.ports.wss=4066 13:40:42 13:40:42 # The Glacier2 WS port number to use (unencrypted) 13:40:42 omero.ports.ws=4065 13:40:42 13:40:42 # The IceGrid registry port number to use 13:40:42 omero.ports.registry=4061 13:40:42 13:40:42 ############################################# 13:40:42 ## JVM configuration 13:40:42 ## 13:40:42 ## Note: changes to the omero.jvmcfg properties 13:40:42 ## will *not* be reflected in OMERO.server 13:40:42 ## since they are defined in OMERO.py. 13:40:42 ############################################# 13:40:42 ## (For documentation only) 13:40:42 # Memory strategy which will be used by default. 13:40:42 # Options include: percent, manual 13:40:42 omero.jvmcfg.strategy=percent 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Explicit value for the `-Xmx` argument, e.g. 13:40:42 # "1g" 13:40:42 omero.jvmcfg.heap_size= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Explicit value for the MaxPermSize argument 13:40:42 # to the JVM, e.g. "500M". Ignored for Java8+ 13:40:42 omero.jvmcfg.perm_gen= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Toggles on or off heap dumps on OOMs. Default is "off". 13:40:42 # The special value "tmp" will create the heap dumps in 13:40:42 # your temp directory. 13:40:42 omero.jvmcfg.heap_dump= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Used only by the percent strategy. An integer between 0 13:40:42 # and 100 which is the percent of active memory that will 13:40:42 # be used by the service. 13:40:42 omero.jvmcfg.percent= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Contains other parameters which should be passed to the 13:40:42 # JVM. The value of "append" is treated as if it were on 13:40:42 # the command line so will be separated on whitespace. 13:40:42 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 13:40:42 # results in two new arguments. 13:40:42 # Note that when using `config set` from the command line 13:40:42 # one may need to give a prior `--` option to prevent a value 13:40:42 # starting with `-` from already being parsed as an option, 13:40:42 # and values may need quoting to prevent whitespace or other 13:40:42 # significant characters from being interpreted prematurely. 13:40:42 13:40:42 omero.jvmcfg.append= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Manual override of the total system memory that 13:40:42 # OMERO will *think* is present on the local OS (MB). 13:40:42 # If unset, an attempt will be made to detect the actual 13:40:42 # amount: first by using the Python library `psutil` and 13:40:42 # if that is not installed, by running a Java tool. If 13:40:42 # neither works, 4.0GB is assumed. 13:40:42 omero.jvmcfg.system_memory= 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Suggestion for strategies as to the minimum memory 13:40:42 # that they will use for calculating JVM settings (MB). 13:40:42 omero.jvmcfg.min_system_memory=3414 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Suggestion for strategies as to the maximum memory 13:40:42 # that they will use for calculating JVM settings (MB). 13:40:42 omero.jvmcfg.max_system_memory=48000 13:40:42 13:40:42 13:40:42 ############################################# 13:40:42 ## Logging properties 13:40:42 ## 13:40:42 ## Note: changes to the default omero.logging values in 13:40:42 ## this file will *not* be reflected in OMERO.server 13:40:42 ## since they are defined in OMERO.py 13:40:42 ############################################# 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Relative server directory where the log files should be stored. 13:40:42 omero.logging.directory=var/log/ 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Whether the server log files should be rotated at a certain time 13:40:42 # interval. If true, log files will be rolled over at midnight. 13:40:42 # Otherwise, log files will be rolled over at a predetermined size, 13:40:42 # see omero.logging.logsize for more information. 13:40:42 omero.logging.timedlog=false 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # If omero.logging.timedlog is false or unset, specifies the 13:40:42 # maximum size of the server log files in bytes above which a 13:40:42 # new log file should be created. 13:40:42 omero.logging.logsize=5000000 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # If omero.logging.timedlog is false or unset, specifies the 13:40:42 # number of old server log files that should be kept. Old log 13:40:42 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 13:40:42 omero.logging.lognum=9 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Specifies the threshold for the Python servers log files. Logging messages 13:40:42 # which are less severe than this value will be ignored. For a list of 13:40:42 # available values, see https://docs.python.org/3/library/logging.html#levels. 13:40:42 omero.logging.level=20 13:40:42 13:40:42 ############################################# 13:40:42 ## Ice overrides 13:40:42 ## 13:40:42 ## Though not used directly by OMERO, a number 13:40:42 ## of properties prefixed with "Ice.*" will 13:40:42 ## alter the behavior of the OMERO runtime 13:40:42 ## by configuring the Ice communicators. For a 13:40:42 ## full listing see: 13:40:42 ## 13:40:42 ## http://doc.zeroc.com/display/Ice/Property+Reference 13:40:42 ## For more information see 13:40:42 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 13:40:42 ############################################# 13:40:42 13:40:42 # Disable IPv6 by setting to 0. Only needed in 13:40:42 # certain situations. 13:40:42 Ice.IPv6=1 13:40:42 13:40:42 # Glacier2Template IceSSL defaults and overrides, 13:40:42 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 13:40:42 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 13:40:42 # update the corresponding IceSSL. property. 13:40:42 omero.glacier2.IceSSL= 13:40:42 13:40:42 # Glacier2Template SSL maximum allowed protocol (mac bug) 13:40:42 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 13:40:42 # Glacier2Template SSL allowed cipher suites 13:40:42 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 13:40:42 # Glacier2Template SSL verification requirements 13:40:42 omero.glacier2.IceSSL.VerifyPeer=0 13:40:42 # Glacier2Template SSL allowed protocols 13:40:42 omero.glacier2.IceSSL.Protocols=tls1 13:40:42 13:40:42 # Override the default set of OMERO services. 13:40:42 # For example, to run OMERO.server with Blitz and Tables only 13:40:42 # (i.e. disable Processor, DropBox, Indexer, PixelData) 13:40:42 # set this to ``master:Blitz-0,Tables-0``. 13:40:42 # Also use this to distribute OMERO services across multiple nodes, 13:40:42 # for example: 13:40:42 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 13:40:42 # See 13:40:42 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 13:40:42 omero.server.nodedescriptors= 13:40:42 13:40:42 ############################################# 13:40:42 ## Darwin (OS X) specific defaults for templated configuration files only. 13:40:42 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 13:40:42 ## file. 13:40:42 ## Do not set these properties in ``omero config``, instead set the original 13:40:42 ## ``xxx.yyy`` property 13:40:42 ############################################# 13:40:42 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 13:40:42 13:40:42 ## (For documentation only) 13:40:42 # Name of the Python module to use when starting the Tables service 13:40:42 omero.tables.module=runTables 13:40:42 13:40:42 ############################################# 13:40:42 ## Server product name for release artifacts 13:40:42 ############################################# 13:40:42 product.name=OMERO.server 13:40:42 13:40:42 ############################################# 13:40:42 ### Properties below this marker are ignored by 13:40:42 ### omero.install.config_parser.PropertyParser 13:40:42 ### END 13:40:42 13:40:42 ############################################# 13:40:42 ## Library versions 13:40:42 ############################################# 13:40:42 ## 13:40:42 versions.findbugs=1.2.1 13:40:42 versions.ice36=3.6.5 13:40:42 versions.ice36_lib=36 13:40:42 ## internal 13:40:42 versions.omeroshares36=3.6.3 13:40:42 versions.omeromock36=3.6.3 13:40:42 versions.icedb36=3.6.3 13:40:42 versions.ipython=1.2.1 13:40:42 13:40:42 versions.janino=2.5.10 13:40:42 13:40:42 versions.reportng=1.1.1 13:40:42 13:40:42 versions.testng=7.5 13:40:42 versions.velocity=1.4 13:40:42 13:40:42 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 13:40:42 versions.omero-scripts-url=${versions.omero-pypi} 13:40:42 13:40:42 # hard coded, should not be picked up by scc for now! 13:40:42 versions.omero-zarr-pixel-buffer=0.7.0-rc3 13:40:42 13:40:42 ### 13:40:42 ### Appended Values 13:40:42 ### 13:40:42 13:40:42 ## Internal dependencies' 13:40:42 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 13:40:42 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 13:40:42 + echo versions.scripts-prefix= 13:40:42 + echo versions.scripts=merge_ci 13:40:42 + cat /home/omero/workspace/OMERO-push/version.properties 13:40:43 + git commit -a -m 'Add version.properties to etc/omero.properties' 13:40:43 [detached HEAD eb33db9529] Add version.properties to etc/omero.properties 13:40:43 1 file changed, 46 insertions(+), 6 deletions(-) 13:40:43 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 13:40:47 To github.com:snoopycrimecop/openmicroscopy.git 13:40:47 + 5fff73bb3e...eb33db9529 HEAD -> merge_ci (forced update) 13:40:47 Finished: SUCCESS