08:58:22 Started by upstream project "Trigger" build number 100 08:58:22 originally caused by: 08:58:22 Started by user devspace 08:58:22 Running as SYSTEM 08:58:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 08:58:22 The recommended git tool is: NONE 08:58:22 No credentials specified 08:58:22 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 08:58:22 Fetching changes from the remote Git repository 08:58:22 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 08:58:22 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 08:58:22 > git --version # timeout=10 08:58:22 > git --version # 'git version 2.52.0' 08:58:22 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:58:29 > git rev-parse origin/develop^{commit} # timeout=10 08:58:29 Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop) 08:58:29 > git config core.sparsecheckout # timeout=10 08:58:29 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30 08:58:32 Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix" 08:58:32 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10 08:58:32 Cleaning workspace 08:58:32 > git rev-parse --verify HEAD # timeout=10 08:58:32 Resetting working tree 08:58:32 > git reset --hard # timeout=10 08:58:33 > git clean -fdx # timeout=10 08:58:33 Copied 1 artifact from "OMERO-python-superbuild-build" build number 72 08:58:33 [OMERO-push] $ /bin/bash -xe /tmp/jenkins10036474635452140142.sh 08:58:33 + python3.11 -mvenv venv 08:58:36 + source /home/omero/workspace/OMERO-push/venv/bin/activate 08:58:36 ++ deactivate nondestructive 08:58:36 ++ '[' -n '' ']' 08:58:36 ++ '[' -n '' ']' 08:58:36 ++ hash -r 08:58:36 ++ '[' -n '' ']' 08:58:36 ++ unset VIRTUAL_ENV 08:58:36 ++ unset VIRTUAL_ENV_PROMPT 08:58:36 ++ '[' '!' nondestructive = nondestructive ']' 08:58:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 08:58:36 ++ export VIRTUAL_ENV 08:58:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:58:36 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:58:36 ++ export PATH 08:58:36 ++ '[' -n '' ']' 08:58:36 ++ '[' -z '' ']' 08:58:36 ++ _OLD_VIRTUAL_PS1= 08:58:36 ++ PS1='(venv) ' 08:58:36 ++ export PS1 08:58:36 ++ VIRTUAL_ENV_PROMPT='(venv) ' 08:58:36 ++ export VIRTUAL_ENV_PROMPT 08:58:36 ++ hash -r 08:58:36 + pip install -U pip 08:58:41 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1) 08:58:42 + pip install -U scc 08:58:42 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 08:58:43 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 08:58:43 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 08:58:43 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 08:58:43 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 08:58:43 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 08:58:43 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 08:58:43 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 08:58:43 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 08:58:43 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 08:58:43 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 08:58:43 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 08:58:43 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 08:58:43 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 08:58:43 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 08:58:43 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 08:58:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 08:58:43 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 08:58:43 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 08:58:43 + test -e src 08:58:43 + cd src 08:58:43 ++ git config github.user 08:58:43 + user=snoopycrimecop 08:58:43 + scc merge develop --no-ask --reset --shallow -S success-only 08:58:53 2026-09-18 08:58:53,382 [ scc.merge] INFO Merging Pull Request(s) based on develop 08:58:53 2026-09-18 08:58:53,383 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 08:58:53 2026-09-18 08:58:53,383 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 08:58:53 2026-09-18 08:58:53,383 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 08:58:53 2026-09-18 08:58:53,383 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 08:58:53 2026-09-18 08:58:53,383 [ scc.merge] INFO Excluding Pull Request(s) without successful status 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO Repository: ome/openmicroscopy 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO Excluded PRs: 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO Already up to date. 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO Merged PRs: 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests' 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer' 08:59:19 2026-09-18 08:59:19,126 [ scc.merge] INFO 08:59:19 + cp etc/omero.properties etc/omero.properties.bak 08:59:19 + rm etc/omero.properties 08:59:19 + touch etc/omero.properties 08:59:19 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 08:59:19 + ne=252 08:59:19 ++ sed -n 1,252p etc/omero.properties.bak 08:59:19 + line='## 08:59:19 ## omero.properties 08:59:19 ## ---------------- 08:59:19 ## 08:59:19 ## DO NOT EDIT! 08:59:19 ## 08:59:19 ## 08:59:19 ## Any of these properties can be altered by using `omero config`. MODIFYING 08:59:19 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 08:59:19 ## at compile time! 08:59:19 ## 08:59:19 ## For an overview of these properties, see 08:59:19 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 08:59:19 ## 08:59:19 ## Properties marked with "DEVELOPMENT" should not be used in production. 08:59:19 08:59:19 # Comma separated list of Ice transports available to clients. The default 08:59:19 # value ("ssl,tcp") instructs Ice to open the ports specified by the 08:59:19 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 08:59:19 # will prevent all non-encrypted connections to the OMERO server. 08:59:19 # 08:59:19 # Additionally, there are two experimental values for using websockets: 08:59:19 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 08:59:19 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 08:59:19 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 08:59:19 # 08:59:19 # Note: When using websockets behind a web server like nginx, additional 08:59:19 # configuration may be needed. 08:59:19 omero.client.icetransports=ssl,tcp 08:59:19 08:59:19 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 08:59:19 # server 08:59:19 omero.ports.prefix= 08:59:19 08:59:19 # The Glacier2 SSL port number to use 08:59:19 omero.ports.ssl=4064 08:59:19 08:59:19 # The Glacier2 TCP port number to use (unencrypted) 08:59:19 omero.ports.tcp=4063 08:59:19 08:59:19 # The Glacier2 WSS port number to use 08:59:19 omero.ports.wss=4066 08:59:19 08:59:19 # The Glacier2 WS port number to use (unencrypted) 08:59:19 omero.ports.ws=4065 08:59:19 08:59:19 # The IceGrid registry port number to use 08:59:19 omero.ports.registry=4061 08:59:19 08:59:19 ############################################# 08:59:19 ## JVM configuration 08:59:19 ## 08:59:19 ## Note: changes to the omero.jvmcfg properties 08:59:19 ## will *not* be reflected in OMERO.server 08:59:19 ## since they are defined in OMERO.py. 08:59:19 ############################################# 08:59:19 ## (For documentation only) 08:59:19 # Memory strategy which will be used by default. 08:59:19 # Options include: percent, manual 08:59:19 omero.jvmcfg.strategy=percent 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Explicit value for the `-Xmx` argument, e.g. 08:59:19 # "1g" 08:59:19 omero.jvmcfg.heap_size= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Explicit value for the MaxPermSize argument 08:59:19 # to the JVM, e.g. "500M". Ignored for Java8+ 08:59:19 omero.jvmcfg.perm_gen= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Toggles on or off heap dumps on OOMs. Default is "off". 08:59:19 # The special value "tmp" will create the heap dumps in 08:59:19 # your temp directory. 08:59:19 omero.jvmcfg.heap_dump= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Used only by the percent strategy. An integer between 0 08:59:19 # and 100 which is the percent of active memory that will 08:59:19 # be used by the service. 08:59:19 omero.jvmcfg.percent= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Contains other parameters which should be passed to the 08:59:19 # JVM. The value of "append" is treated as if it were on 08:59:19 # the command line so will be separated on whitespace. 08:59:19 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 08:59:19 # results in two new arguments. 08:59:19 # Note that when using `config set` from the command line 08:59:19 # one may need to give a prior `--` option to prevent a value 08:59:19 # starting with `-` from already being parsed as an option, 08:59:19 # and values may need quoting to prevent whitespace or other 08:59:19 # significant characters from being interpreted prematurely. 08:59:19 08:59:19 omero.jvmcfg.append= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Manual override of the total system memory that 08:59:19 # OMERO will *think* is present on the local OS (MB). 08:59:19 # If unset, an attempt will be made to detect the actual 08:59:19 # amount: first by using the Python library `psutil` and 08:59:19 # if that is not installed, by running a Java tool. If 08:59:19 # neither works, 4.0GB is assumed. 08:59:19 omero.jvmcfg.system_memory= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Suggestion for strategies as to the minimum memory 08:59:19 # that they will use for calculating JVM settings (MB). 08:59:19 omero.jvmcfg.min_system_memory=3414 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Suggestion for strategies as to the maximum memory 08:59:19 # that they will use for calculating JVM settings (MB). 08:59:19 omero.jvmcfg.max_system_memory=48000 08:59:19 08:59:19 08:59:19 ############################################# 08:59:19 ## Logging properties 08:59:19 ## 08:59:19 ## Note: changes to the default omero.logging values in 08:59:19 ## this file will *not* be reflected in OMERO.server 08:59:19 ## since they are defined in OMERO.py 08:59:19 ############################################# 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Relative server directory where the log files should be stored. 08:59:19 omero.logging.directory=var/log/ 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Whether the server log files should be rotated at a certain time 08:59:19 # interval. If true, log files will be rolled over at midnight. 08:59:19 # Otherwise, log files will be rolled over at a predetermined size, 08:59:19 # see omero.logging.logsize for more information. 08:59:19 omero.logging.timedlog=false 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # If omero.logging.timedlog is false or unset, specifies the 08:59:19 # maximum size of the server log files in bytes above which a 08:59:19 # new log file should be created. 08:59:19 omero.logging.logsize=5000000 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # If omero.logging.timedlog is false or unset, specifies the 08:59:19 # number of old server log files that should be kept. Old log 08:59:19 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 08:59:19 omero.logging.lognum=9 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Specifies the threshold for the Python servers log files. Logging messages 08:59:19 # which are less severe than this value will be ignored. For a list of 08:59:19 # available values, see https://docs.python.org/3/library/logging.html#levels. 08:59:19 omero.logging.level=20 08:59:19 08:59:19 ############################################# 08:59:19 ## Ice overrides 08:59:19 ## 08:59:19 ## Though not used directly by OMERO, a number 08:59:19 ## of properties prefixed with "Ice.*" will 08:59:19 ## alter the behavior of the OMERO runtime 08:59:19 ## by configuring the Ice communicators. For a 08:59:19 ## full listing see: 08:59:19 ## 08:59:19 ## http://doc.zeroc.com/display/Ice/Property+Reference 08:59:19 ## For more information see 08:59:19 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 08:59:19 ############################################# 08:59:19 08:59:19 # Disable IPv6 by setting to 0. Only needed in 08:59:19 # certain situations. 08:59:19 Ice.IPv6=1 08:59:19 08:59:19 # Glacier2Template IceSSL defaults and overrides, 08:59:19 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 08:59:19 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 08:59:19 # update the corresponding IceSSL. property. 08:59:19 omero.glacier2.IceSSL= 08:59:19 08:59:19 # Glacier2Template SSL maximum allowed protocol (mac bug) 08:59:19 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 08:59:19 # Glacier2Template SSL allowed cipher suites 08:59:19 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 08:59:19 # Glacier2Template SSL verification requirements 08:59:19 omero.glacier2.IceSSL.VerifyPeer=0 08:59:19 # Glacier2Template SSL allowed protocols 08:59:19 omero.glacier2.IceSSL.Protocols=tls1 08:59:19 08:59:19 # Override the default set of OMERO services. 08:59:19 # For example, to run OMERO.server with Blitz and Tables only 08:59:19 # (i.e. disable Processor, DropBox, Indexer, PixelData) 08:59:19 # set this to ``master:Blitz-0,Tables-0``. 08:59:19 # Also use this to distribute OMERO services across multiple nodes, 08:59:19 # for example: 08:59:19 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 08:59:19 # See 08:59:19 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 08:59:19 omero.server.nodedescriptors= 08:59:19 08:59:19 ############################################# 08:59:19 ## Darwin (OS X) specific defaults for templated configuration files only. 08:59:19 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 08:59:19 ## file. 08:59:19 ## Do not set these properties in ``omero config``, instead set the original 08:59:19 ## ``xxx.yyy`` property 08:59:19 ############################################# 08:59:19 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Name of the Python module to use when starting the Tables service 08:59:19 omero.tables.module=runTables 08:59:19 08:59:19 ############################################# 08:59:19 ## Server product name for release artifacts 08:59:19 ############################################# 08:59:19 product.name=OMERO.server 08:59:19 08:59:19 ############################################# 08:59:19 ### Properties below this marker are ignored by 08:59:19 ### omero.install.config_parser.PropertyParser 08:59:19 ### END 08:59:19 08:59:19 ############################################# 08:59:19 ## Library versions 08:59:19 ############################################# 08:59:19 ## 08:59:19 versions.findbugs=1.2.1 08:59:19 versions.ice36=3.6.5 08:59:19 versions.ice36_lib=36 08:59:19 ## internal 08:59:19 versions.omeroshares36=3.6.3 08:59:19 versions.omeromock36=3.6.3 08:59:19 versions.icedb36=3.6.3 08:59:19 versions.ipython=1.2.1 08:59:19 08:59:19 versions.janino=2.5.10 08:59:19 08:59:19 versions.reportng=1.1.1 08:59:19 08:59:19 versions.testng=7.5 08:59:19 versions.velocity=1.4 08:59:19 08:59:19 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 08:59:19 versions.omero-scripts-url=${versions.omero-pypi} 08:59:19 08:59:19 # hard coded, should not be picked up by scc for now! 08:59:19 versions.omero-zarr-pixel-buffer=0.7.1 08:59:19 08:59:19 ### 08:59:19 ### Appended Values 08:59:19 ### 08:59:19 08:59:19 ## Internal dependencies' 08:59:19 + echo '## 08:59:19 ## omero.properties 08:59:19 ## ---------------- 08:59:19 ## 08:59:19 ## DO NOT EDIT! 08:59:19 ## 08:59:19 ## 08:59:19 ## Any of these properties can be altered by using `omero config`. MODIFYING 08:59:19 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 08:59:19 ## at compile time! 08:59:19 ## 08:59:19 ## For an overview of these properties, see 08:59:19 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 08:59:19 ## 08:59:19 ## Properties marked with "DEVELOPMENT" should not be used in production. 08:59:19 08:59:19 # Comma separated list of Ice transports available to clients. The default 08:59:19 # value ("ssl,tcp") instructs Ice to open the ports specified by the 08:59:19 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 08:59:19 # will prevent all non-encrypted connections to the OMERO server. 08:59:19 # 08:59:19 # Additionally, there are two experimental values for using websockets: 08:59:19 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 08:59:19 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 08:59:19 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 08:59:19 # 08:59:19 # Note: When using websockets behind a web server like nginx, additional 08:59:19 # configuration may be needed. 08:59:19 omero.client.icetransports=ssl,tcp 08:59:19 08:59:19 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 08:59:19 # server 08:59:19 omero.ports.prefix= 08:59:19 08:59:19 # The Glacier2 SSL port number to use 08:59:19 omero.ports.ssl=4064 08:59:19 08:59:19 # The Glacier2 TCP port number to use (unencrypted) 08:59:19 omero.ports.tcp=4063 08:59:19 08:59:19 # The Glacier2 WSS port number to use 08:59:19 omero.ports.wss=4066 08:59:19 08:59:19 # The Glacier2 WS port number to use (unencrypted) 08:59:19 omero.ports.ws=4065 08:59:19 08:59:19 # The IceGrid registry port number to use 08:59:19 omero.ports.registry=4061 08:59:19 08:59:19 ############################################# 08:59:19 ## JVM configuration 08:59:19 ## 08:59:19 ## Note: changes to the omero.jvmcfg properties 08:59:19 ## will *not* be reflected in OMERO.server 08:59:19 ## since they are defined in OMERO.py. 08:59:19 ############################################# 08:59:19 ## (For documentation only) 08:59:19 # Memory strategy which will be used by default. 08:59:19 # Options include: percent, manual 08:59:19 omero.jvmcfg.strategy=percent 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Explicit value for the `-Xmx` argument, e.g. 08:59:19 # "1g" 08:59:19 omero.jvmcfg.heap_size= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Explicit value for the MaxPermSize argument 08:59:19 # to the JVM, e.g. "500M". Ignored for Java8+ 08:59:19 omero.jvmcfg.perm_gen= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Toggles on or off heap dumps on OOMs. Default is "off". 08:59:19 # The special value "tmp" will create the heap dumps in 08:59:19 # your temp directory. 08:59:19 omero.jvmcfg.heap_dump= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Used only by the percent strategy. An integer between 0 08:59:19 # and 100 which is the percent of active memory that will 08:59:19 # be used by the service. 08:59:19 omero.jvmcfg.percent= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Contains other parameters which should be passed to the 08:59:19 # JVM. The value of "append" is treated as if it were on 08:59:19 # the command line so will be separated on whitespace. 08:59:19 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 08:59:19 # results in two new arguments. 08:59:19 # Note that when using `config set` from the command line 08:59:19 # one may need to give a prior `--` option to prevent a value 08:59:19 # starting with `-` from already being parsed as an option, 08:59:19 # and values may need quoting to prevent whitespace or other 08:59:19 # significant characters from being interpreted prematurely. 08:59:19 08:59:19 omero.jvmcfg.append= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Manual override of the total system memory that 08:59:19 # OMERO will *think* is present on the local OS (MB). 08:59:19 # If unset, an attempt will be made to detect the actual 08:59:19 # amount: first by using the Python library `psutil` and 08:59:19 # if that is not installed, by running a Java tool. If 08:59:19 # neither works, 4.0GB is assumed. 08:59:19 omero.jvmcfg.system_memory= 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Suggestion for strategies as to the minimum memory 08:59:19 # that they will use for calculating JVM settings (MB). 08:59:19 omero.jvmcfg.min_system_memory=3414 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Suggestion for strategies as to the maximum memory 08:59:19 # that they will use for calculating JVM settings (MB). 08:59:19 omero.jvmcfg.max_system_memory=48000 08:59:19 08:59:19 08:59:19 ############################################# 08:59:19 ## Logging properties 08:59:19 ## 08:59:19 ## Note: changes to the default omero.logging values in 08:59:19 ## this file will *not* be reflected in OMERO.server 08:59:19 ## since they are defined in OMERO.py 08:59:19 ############################################# 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Relative server directory where the log files should be stored. 08:59:19 omero.logging.directory=var/log/ 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Whether the server log files should be rotated at a certain time 08:59:19 # interval. If true, log files will be rolled over at midnight. 08:59:19 # Otherwise, log files will be rolled over at a predetermined size, 08:59:19 # see omero.logging.logsize for more information. 08:59:19 omero.logging.timedlog=false 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # If omero.logging.timedlog is false or unset, specifies the 08:59:19 # maximum size of the server log files in bytes above which a 08:59:19 # new log file should be created. 08:59:19 omero.logging.logsize=5000000 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # If omero.logging.timedlog is false or unset, specifies the 08:59:19 # number of old server log files that should be kept. Old log 08:59:19 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 08:59:19 omero.logging.lognum=9 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Specifies the threshold for the Python servers log files. Logging messages 08:59:19 # which are less severe than this value will be ignored. For a list of 08:59:19 # available values, see https://docs.python.org/3/library/logging.html#levels. 08:59:19 omero.logging.level=20 08:59:19 08:59:19 ############################################# 08:59:19 ## Ice overrides 08:59:19 ## 08:59:19 ## Though not used directly by OMERO, a number 08:59:19 ## of properties prefixed with "Ice.*" will 08:59:19 ## alter the behavior of the OMERO runtime 08:59:19 ## by configuring the Ice communicators. For a 08:59:19 ## full listing see: 08:59:19 ## 08:59:19 ## http://doc.zeroc.com/display/Ice/Property+Reference 08:59:19 ## For more information see 08:59:19 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 08:59:19 ############################################# 08:59:19 08:59:19 # Disable IPv6 by setting to 0. Only needed in 08:59:19 # certain situations. 08:59:19 Ice.IPv6=1 08:59:19 08:59:19 # Glacier2Template IceSSL defaults and overrides, 08:59:19 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 08:59:19 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 08:59:19 # update the corresponding IceSSL. property. 08:59:19 omero.glacier2.IceSSL= 08:59:19 08:59:19 # Glacier2Template SSL maximum allowed protocol (mac bug) 08:59:19 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 08:59:19 # Glacier2Template SSL allowed cipher suites 08:59:19 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 08:59:19 # Glacier2Template SSL verification requirements 08:59:19 omero.glacier2.IceSSL.VerifyPeer=0 08:59:19 # Glacier2Template SSL allowed protocols 08:59:19 omero.glacier2.IceSSL.Protocols=tls1 08:59:19 08:59:19 # Override the default set of OMERO services. 08:59:19 # For example, to run OMERO.server with Blitz and Tables only 08:59:19 # (i.e. disable Processor, DropBox, Indexer, PixelData) 08:59:19 # set this to ``master:Blitz-0,Tables-0``. 08:59:19 # Also use this to distribute OMERO services across multiple nodes, 08:59:19 # for example: 08:59:19 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 08:59:19 # See 08:59:19 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 08:59:19 omero.server.nodedescriptors= 08:59:19 08:59:19 ############################################# 08:59:19 ## Darwin (OS X) specific defaults for templated configuration files only. 08:59:19 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 08:59:19 ## file. 08:59:19 ## Do not set these properties in ``omero config``, instead set the original 08:59:19 ## ``xxx.yyy`` property 08:59:19 ############################################# 08:59:19 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 08:59:19 08:59:19 ## (For documentation only) 08:59:19 # Name of the Python module to use when starting the Tables service 08:59:19 omero.tables.module=runTables 08:59:19 08:59:19 ############################################# 08:59:19 ## Server product name for release artifacts 08:59:19 ############################################# 08:59:19 product.name=OMERO.server 08:59:19 08:59:19 ############################################# 08:59:19 ### Properties below this marker are ignored by 08:59:19 ### omero.install.config_parser.PropertyParser 08:59:19 ### END 08:59:19 08:59:19 ############################################# 08:59:19 ## Library versions 08:59:19 ############################################# 08:59:19 ## 08:59:19 versions.findbugs=1.2.1 08:59:19 versions.ice36=3.6.5 08:59:19 versions.ice36_lib=36 08:59:19 ## internal 08:59:19 versions.omeroshares36=3.6.3 08:59:19 versions.omeromock36=3.6.3 08:59:19 versions.icedb36=3.6.3 08:59:19 versions.ipython=1.2.1 08:59:19 08:59:19 versions.janino=2.5.10 08:59:19 08:59:19 versions.reportng=1.1.1 08:59:19 08:59:19 versions.testng=7.5 08:59:19 versions.velocity=1.4 08:59:19 08:59:19 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 08:59:19 versions.omero-scripts-url=${versions.omero-pypi} 08:59:19 08:59:19 # hard coded, should not be picked up by scc for now! 08:59:19 versions.omero-zarr-pixel-buffer=0.7.1 08:59:19 08:59:19 ### 08:59:19 ### Appended Values 08:59:19 ### 08:59:19 08:59:19 ## Internal dependencies' 08:59:19 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 08:59:19 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 08:59:19 + echo versions.scripts-prefix= 08:59:19 + echo versions.scripts=merge_ci 08:59:19 + cat /home/omero/workspace/OMERO-push/version.properties 08:59:19 + git commit -a -m 'Add version.properties to etc/omero.properties' 08:59:19 [detached HEAD 6e43949dc6] Add version.properties to etc/omero.properties 08:59:19 1 file changed, 46 insertions(+), 5 deletions(-) 08:59:19 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 08:59:23 To github.com:snoopycrimecop/openmicroscopy.git 08:59:23 + ce68b23783...6e43949dc6 HEAD -> merge_ci (forced update) 08:59:23 Finished: SUCCESS