00:47:13 Started by upstream project "Trigger" build number 99 00:47:13 originally caused by: 00:47:13 Started by timer 00:47:13 Running as SYSTEM 00:47:14 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:47:14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3822790250482004553.sh 00:47:14 + source /home/settings.env 00:47:14 ++ OMERO_DB_HOST=pg 00:47:14 ++ OMERO_DB_USER=postgres 00:47:14 ++ OMERO_DB_PASS= 00:47:14 ++ OMERO_ROOT_PASS=omero 00:47:14 ++ OMERO_DATA_DIR=/OMERO 00:47:14 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:14 + OMERO_DB_NAME=OMERO-server 00:47:14 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:14 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:14 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:14 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:14 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:47:14 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:14 ++ deactivate nondestructive 00:47:14 ++ '[' -n '' ']' 00:47:14 ++ '[' -n '' ']' 00:47:14 ++ '[' -n /bin/bash -o -n '' ']' 00:47:14 ++ hash -r 00:47:14 ++ '[' -n '' ']' 00:47:14 ++ unset VIRTUAL_ENV 00:47:14 ++ '[' '!' nondestructive = nondestructive ']' 00:47:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:14 ++ export VIRTUAL_ENV 00:47:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:14 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:14 ++ export PATH 00:47:14 ++ '[' -n '' ']' 00:47:14 ++ '[' -z '' ']' 00:47:14 ++ _OLD_VIRTUAL_PS1= 00:47:14 ++ PS1='(.venv3) ' 00:47:14 ++ export PS1 00:47:14 ++ '[' -n /bin/bash -o -n '' ']' 00:47:14 ++ hash -r 00:47:14 + omero admin stop 00:47:23 Waiting on shutdown. Use CTRL-C to exit 00:47:23 .+ sleep 5 00:47:39 + deactivate 00:47:39 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:47:39 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:39 + export PATH 00:47:39 + unset _OLD_VIRTUAL_PATH 00:47:39 + '[' -n '' ']' 00:47:39 + '[' -n /bin/bash -o -n '' ']' 00:47:39 + hash -r 00:47:39 + '[' -n '' ']' 00:47:39 + unset VIRTUAL_ENV 00:47:39 + '[' '!' '' = nondestructive ']' 00:47:39 + unset -f deactivate 00:47:39 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:47:41 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:47:44 + '[' false = true ']' 00:47:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:47:44 Skipping PURGE_DATA:CleanDbAndRepo 00:47:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:47:49 Copied 1 artifact from "OMERO-build" build number 87 00:47:49 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 86 00:47:49 Copied 2 artifacts from "OMERO-build-build" build number 87 00:47:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11391877840745999671.sh 00:47:49 + source /home/settings.env 00:47:49 ++ OMERO_DB_HOST=pg 00:47:49 ++ OMERO_DB_USER=postgres 00:47:49 ++ OMERO_DB_PASS= 00:47:49 ++ OMERO_ROOT_PASS=omero 00:47:49 ++ OMERO_DATA_DIR=/OMERO 00:47:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:49 + OMERO_DB_NAME=OMERO-server 00:47:49 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:49 + mkdir -p /home/omero/omero-server-data 00:47:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:49 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:49 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:49 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:49 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:49 ++ ls OMERO.server-5.6.3-469-5105c09c91-ice36.zip 00:47:49 + ZIP=OMERO.server-5.6.3-469-5105c09c91-ice36.zip 00:47:49 + '[' '!' -z '' ']' 00:47:49 + DIST=OMERO.server-5.6.3-469-5105c09c91-ice36 00:47:49 + unzip OMERO.server-5.6.3-469-5105c09c91-ice36.zip 00:47:49 Archive: OMERO.server-5.6.3-469-5105c09c91-ice36.zip 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/blitz/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/grid/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/profiles/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/error/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/grid/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/luts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/luts/janelia/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/luts/ncsa_paledit/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/luts/wcif/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/analysis_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/annotation_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/export_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/figure_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/import_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/scripts/omero/util_scripts/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/server/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/share/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/share/licenses/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/misc/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__1/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__10/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__11/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__2/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__3/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__4/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__5/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__6/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__7/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__8/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3A__9/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__4/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__5/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__6/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__7/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.1__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.2__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.2__0/t/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.3__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.4__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.0__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.1__1/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.2__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__1/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__2/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__3/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/ 00:47:49 creating: OMERO.server-5.6.3-469-5105c09c91-ice36/var/ 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/LICENSE.txt 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/backup.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/blitz/mail-senders.example 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/blitz/mail-server.example 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/build.properties 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/env.bat 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/env.sh 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/hibernate.properties 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/ice.config 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/logback-cli.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/logback-indexing-cli.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/logback-indexing.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/logback.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/mime.types 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/node1.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/node2.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/omero.properties 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/profiles/psql 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/rollover.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/Windows.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/error/maintainance.html 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/grid/README 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/grid/default.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/grid/templates.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/grid/windefault.xml 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/ice.config 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/internal.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/master.cfg 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/templates/robot.template 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/etc/testdropbox.config 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/history.rst 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/OMEZarrReader.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/activation.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aggdesigner-algorithm.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aircompressor.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/annotations.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/antlr.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aopalliance.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/avatica-core.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/avatica-metrics.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aws-java-sdk-core.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aws-java-sdk-kms.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/aws-java-sdk-s3.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/base.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-all.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-anim.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-awt-util.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-bridge.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-codec.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-constants.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-css.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-dom.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-ext.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-extension.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-gui-util.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-gvt.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-i18n.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-parser.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-rasterizer-ext.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-rasterizer.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-script.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-slideshow.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-squiggle-ext.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-squiggle.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-svg-dom.jar 00:47:49 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/lib/client/batik-svgbrowser.jar 00:47:49 inflating: 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OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/schema.sql 00:47:52 inflating: OMERO.server-5.6.3-469-5105c09c91-ice36/sql/psql/OMERO5.4__0/views.sql 00:47:52 + rm -f OMERO.server-5.6.3-469-5105c09c91-ice36.zip 00:47:52 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-469-5105c09c91-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:47:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:52 ++ deactivate nondestructive 00:47:52 ++ '[' -n '' ']' 00:47:52 ++ '[' -n '' ']' 00:47:52 ++ '[' -n /bin/bash -o -n '' ']' 00:47:52 ++ hash -r 00:47:52 ++ '[' -n '' ']' 00:47:52 ++ unset VIRTUAL_ENV 00:47:52 ++ '[' '!' nondestructive = nondestructive ']' 00:47:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:52 ++ export VIRTUAL_ENV 00:47:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:52 ++ export PATH 00:47:52 ++ '[' -n '' ']' 00:47:52 ++ '[' -z '' ']' 00:47:52 ++ _OLD_VIRTUAL_PS1= 00:47:52 ++ PS1='(.venv3) ' 00:47:52 ++ export PS1 00:47:52 ++ '[' -n /bin/bash -o -n '' ']' 00:47:52 ++ hash -r 00:47:52 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:47:52 Collecting zeroc-ice==3.6.5 00:47:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:47:55 Installing collected packages: zeroc-ice 00:47:55 Successfully installed zeroc-ice-3.6.5 00:47:55 + pip install -U pip future 00:47:56 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:47:56 Collecting pip 00:47:56 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 00:47:56 Collecting future 00:47:56 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:47:56 Installing collected packages: pip, future 00:47:56 Attempting uninstall: pip 00:47:56 Found existing installation: pip 21.2.3 00:47:56 Uninstalling pip-21.2.3: 00:47:56 Successfully uninstalled pip-21.2.3 00:47:58 Successfully installed future-1.0.0 pip-24.0 00:47:58 + pip install markdown 00:47:59 Collecting markdown 00:47:59 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:47:59 Collecting importlib-metadata>=4.4 (from markdown) 00:47:59 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 00:48:00 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:48:00 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 00:48:00 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:48:00 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 00:48:00 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 00:48:00 Installing collected packages: zipp, importlib-metadata, markdown 00:48:00 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.19.2 00:48:00 + pip install reportlab 00:48:01 Collecting reportlab 00:48:01 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB) 00:48:01 Collecting pillow>=9.0.0 (from reportlab) 00:48:01 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 00:48:01 Collecting chardet (from reportlab) 00:48:01 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:48:01 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB) 00:48:01 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:48:01 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:48:02 Installing collected packages: pillow, chardet, reportlab 00:48:03 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0 00:48:03 + pip install omego 00:48:04 Collecting omego 00:48:04 Using cached omego-0.7.0-py3-none-any.whl 00:48:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:48:04 Collecting yaclifw>=0.1.1 (from omego) 00:48:04 Using cached yaclifw-0.2.0-py3-none-any.whl 00:48:05 Collecting six (from yaclifw>=0.1.1->omego) 00:48:05 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:48:05 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:48:05 Installing collected packages: six, yaclifw, omego 00:48:05 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:48:05 + pip install tables 00:48:05 Collecting tables 00:48:05 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:48:06 Collecting numpy>=1.19.0 (from tables) 00:48:06 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:48:06 Collecting numexpr>=2.6.2 (from tables) 00:48:06 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 00:48:06 Collecting packaging (from tables) 00:48:06 Downloading packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:48:06 Collecting py-cpuinfo (from tables) 00:48:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:48:07 Collecting blosc2>=2.3.0 (from tables) 00:48:07 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:48:07 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:48:07 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:48:07 Collecting msgpack (from blosc2>=2.3.0->tables) 00:48:07 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:48:07 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:48:07 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:48:07 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB) 00:48:07 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:48:07 Downloading packaging-24.1-py3-none-any.whl (53 kB) 00:48:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 2.0 MB/s eta 0:00:00 00:48:07 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:48:07 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:48:07 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:48:08 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:48:11 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 00:48:12 + pip install jinja2 00:48:12 Collecting jinja2 00:48:12 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:48:12 Collecting MarkupSafe>=2.0 (from jinja2) 00:48:12 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:48:12 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:48:12 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:48:13 Installing collected packages: MarkupSafe, jinja2 00:48:14 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 00:48:14 + pip install omero-py 00:48:14 Collecting omero-py 00:48:14 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB) 00:48:15 Collecting urllib3<2 (from omero-py) 00:48:15 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 00:48:15 Collecting appdirs (from omero-py) 00:48:15 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:48:15 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:48:15 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:48:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0) 00:48:15 Collecting PyYAML (from omero-py) 00:48:15 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:48:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:48:15 Collecting requests (from omero-py) 00:48:15 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:48:15 Collecting portalocker (from omero-py) 00:48:15 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 00:48:15 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:48:15 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:48:15 Collecting idna<4,>=2.5 (from requests->omero-py) 00:48:15 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:48:15 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:48:15 Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB) 00:48:15 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB) 00:48:15 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 00:48:15 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:48:15 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 00:48:15 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:48:15 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:48:15 Using cached certifi-2024.6.2-py3-none-any.whl (164 kB) 00:48:15 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:48:15 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:48:16 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 00:48:18 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.6.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.32.3 urllib3-1.26.18 00:48:18 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:48:19 Collecting omero-metadata 00:48:19 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-chxca1mi/omero-metadata_194b979cf195435faa540b8aa2002d1a 00:48:19 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-chxca1mi/omero-metadata_194b979cf195435faa540b8aa2002d1a 00:48:20 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 4f1f7aa024b61f87130968c53391f486fa62413c 00:48:20 Installing build dependencies: started 00:48:22 Installing build dependencies: finished with status 'done' 00:48:22 Getting requirements to build wheel: started 00:48:23 Getting requirements to build wheel: finished with status 'done' 00:48:23 Installing backend dependencies: started 00:48:24 Installing backend dependencies: finished with status 'done' 00:48:24 Preparing metadata (pyproject.toml): started 00:48:24 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2) 00:48:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:48:24 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 00:48:24 Collecting pandas (from omero-metadata) 00:48:24 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:48:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 00:48:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:48:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:48:24 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:48:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0) 00:48:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:48:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:48:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 00:48:24 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:48:24 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:48:24 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:48:25 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:48:25 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:48:25 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:48:25 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:48:25 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:48:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:48:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 00:48:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.6.2) 00:48:25 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:48:25 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:48:25 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:48:25 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:48:25 Building wheels for collected packages: omero-metadata 00:48:25 Building wheel for omero-metadata (pyproject.toml): started 00:48:26 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:48:26 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=791b02b76e7357fe18d889da7744a9ac0c7f70fa44d37336a0013e40fe17136e 00:48:26 Stored in directory: /tmp/pip-ephem-wheel-cache-1kss7nc4/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:48:26 Successfully built omero-metadata 00:48:26 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:48:32 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:48:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:48:33 Collecting omero-cli-render 00:48:33 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-zpql33v2/omero-cli-render_3486c212395c4787ab3f713e7b420cce 00:48:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-zpql33v2/omero-cli-render_3486c212395c4787ab3f713e7b420cce 00:48:34 Running command git checkout -b merge_ci --track origin/merge_ci 00:48:34 Switched to a new branch 'merge_ci' 00:48:34 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:48:34 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 6187bee741976f79efa90471e39b4d89a9ffb696 00:48:34 Installing build dependencies: started 00:48:36 Installing build dependencies: finished with status 'done' 00:48:36 Getting requirements to build wheel: started 00:48:37 Getting requirements to build wheel: finished with status 'done' 00:48:37 Installing backend dependencies: started 00:48:37 Installing backend dependencies: finished with status 'done' 00:48:37 Preparing metadata (pyproject.toml): started 00:48:38 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:48:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2) 00:48:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 00:48:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:48:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:48:38 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:48:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0) 00:48:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:48:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:48:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 00:48:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:48:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 00:48:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.6.2) 00:48:38 Building wheels for collected packages: omero-cli-render 00:48:38 Building wheel for omero-cli-render (pyproject.toml): started 00:48:38 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:48:38 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18032 sha256=b89e9075f1757bd66435ab3c5611ea9ced19568a47d216e10aedc668bb50ef70 00:48:38 Stored in directory: /tmp/pip-ephem-wheel-cache-_5nx68_b/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:48:38 Successfully built omero-cli-render 00:48:38 Installing collected packages: omero-cli-render 00:48:38 Successfully installed omero-cli-render-0.8.1.dev0 00:48:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:48:39 Collecting omero-cli-duplicate 00:48:39 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-yqf3t295/omero-cli-duplicate_815e3eeff2e740518a7867efa0848d40 00:48:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-yqf3t295/omero-cli-duplicate_815e3eeff2e740518a7867efa0848d40 00:48:40 Running command git checkout -b merge_ci --track origin/merge_ci 00:48:40 Switched to a new branch 'merge_ci' 00:48:40 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:48:40 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 622f842137184c850bf2c3c2a41e89649c6ebdd8 00:48:40 Installing build dependencies: started 00:48:42 Installing build dependencies: finished with status 'done' 00:48:42 Getting requirements to build wheel: started 00:48:42 Getting requirements to build wheel: finished with status 'done' 00:48:42 Installing backend dependencies: started 00:48:44 Installing backend dependencies: finished with status 'done' 00:48:44 Preparing metadata (pyproject.toml): started 00:48:44 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:44 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2) 00:48:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 00:48:44 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:48:44 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:48:44 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:48:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0) 00:48:44 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:48:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:48:44 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:48:44 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 00:48:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:48:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 00:48:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.6.2) 00:48:44 Building wheels for collected packages: omero-cli-duplicate 00:48:44 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:48:45 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:48:45 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=712039f0a39e41158178834215b7081d6feb7182924fe4febee74c61dac5dff6 00:48:45 Stored in directory: /tmp/pip-ephem-wheel-cache-4r0tzkv3/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:48:45 Successfully built omero-cli-duplicate 00:48:45 Installing collected packages: omero-cli-duplicate 00:48:45 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:48:45 + pip install omero-certificates 00:48:45 Collecting omero-certificates 00:48:45 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:48:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2) 00:48:46 Collecting distro==1.8.0 (from omero-certificates) 00:48:46 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:48:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 00:48:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:48:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:48:46 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:48:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0) 00:48:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:48:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:48:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:48:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 00:48:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:48:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 00:48:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.6.2) 00:48:46 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:48:46 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:48:46 Installing collected packages: distro, omero-certificates 00:48:46 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:48:46 + for x in *.tar.gz 00:48:46 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:48:47 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:48:47 Installing build dependencies: started 00:48:49 Installing build dependencies: finished with status 'done' 00:48:49 Getting requirements to build wheel: started 00:48:49 Getting requirements to build wheel: finished with status 'done' 00:48:49 Installing backend dependencies: started 00:48:50 Installing backend dependencies: finished with status 'done' 00:48:50 Preparing metadata (pyproject.toml): started 00:48:50 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:50 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.2) 00:48:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.18) 00:48:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:48:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:48:50 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:48:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.3.0) 00:48:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1) 00:48:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:48:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:48:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.8.2) 00:48:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 00:48:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 00:48:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.6.2) 00:48:50 Building wheels for collected packages: omero-dropbox 00:48:50 Building wheel for omero-dropbox (pyproject.toml): started 00:48:50 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:48:50 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=38aa81360b28698dbe521a4a9f7e8bad7ef6d38c6846e7d06574263cfa23bef0 00:48:50 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:48:50 Successfully built omero-dropbox 00:48:51 Installing collected packages: omero-dropbox 00:48:51 Successfully installed omero-dropbox-5.7.1.dev0 00:48:51 + for x in *.tar.gz 00:48:51 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:48:51 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:48:51 Installing build dependencies: started 00:48:53 Installing build dependencies: finished with status 'done' 00:48:53 Getting requirements to build wheel: started 00:48:54 Getting requirements to build wheel: finished with status 'done' 00:48:54 Installing backend dependencies: started 00:48:55 Installing backend dependencies: finished with status 'done' 00:48:55 Preparing metadata (pyproject.toml): started 00:48:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:55 Building wheels for collected packages: omero_marshal 00:48:55 Building wheel for omero_marshal (pyproject.toml): started 00:48:55 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:48:55 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=612ec092be4e6b2330275ea24e4bdbdf411427ce0c2517d964360a3c774a7e82 00:48:55 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:48:55 Successfully built omero_marshal 00:48:55 Installing collected packages: omero_marshal 00:48:56 Successfully installed omero_marshal-0.9.1.dev0 00:48:56 + for x in *.tar.gz 00:48:56 + pip install -U omero_py-5.19.3.dev0.tar.gz 00:48:56 Processing ./omero_py-5.19.3.dev0.tar.gz 00:48:56 Installing build dependencies: started 00:48:58 Installing build dependencies: finished with status 'done' 00:48:58 Getting requirements to build wheel: started 00:48:59 Getting requirements to build wheel: finished with status 'done' 00:48:59 Installing backend dependencies: started 00:49:00 Installing backend dependencies: finished with status 'done' 00:49:00 Preparing metadata (pyproject.toml): started 00:49:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18) 00:49:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4) 00:49:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0) 00:49:00 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4) 00:49:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0) 00:49:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1) 00:49:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5) 00:49:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.32.3) 00:49:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2) 00:49:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2) 00:49:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7) 00:49:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.6.2) 00:49:00 Building wheels for collected packages: omero-py 00:49:00 Building wheel for omero-py (pyproject.toml): started 00:49:01 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:49:01 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2782728 sha256=6c280bb55fd315d6a45009fa2e83375c24427687e3ef5182312ac7a76cd4cda9 00:49:01 Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41 00:49:01 Successfully built omero-py 00:49:02 Installing collected packages: omero-py 00:49:02 Attempting uninstall: omero-py 00:49:02 Found existing installation: omero-py 5.19.2 00:49:02 Uninstalling omero-py-5.19.2: 00:49:02 Successfully uninstalled omero-py-5.19.2 00:49:04 Successfully installed omero-py-5.19.3.dev0 00:49:05 + for x in *.tar.gz 00:49:05 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 00:49:05 Processing ./omero_scripts-5.8.3.dev0.tar.gz 00:49:05 Installing build dependencies: started 00:49:08 Installing build dependencies: finished with status 'done' 00:49:08 Getting requirements to build wheel: started 00:49:08 Getting requirements to build wheel: finished with status 'done' 00:49:08 Installing backend dependencies: started 00:49:09 Installing backend dependencies: finished with status 'done' 00:49:09 Preparing metadata (pyproject.toml): started 00:49:10 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:10 Building wheels for collected packages: omero-scripts 00:49:10 Building wheel for omero-scripts (pyproject.toml): started 00:49:10 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:49:10 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=84545e6ce7127afa79c5c46f83c779ef5de0ed3420f8f2d3236d7ad2590e01b0 00:49:10 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 00:49:10 Successfully built omero-scripts 00:49:10 Installing collected packages: omero-scripts 00:49:11 Successfully installed omero-scripts-5.8.3.dev0 00:49:11 + for x in *.tar.gz 00:49:11 + pip install -U omero_web-5.26.1.dev0.tar.gz 00:49:11 Processing ./omero_web-5.26.1.dev0.tar.gz 00:49:11 Installing build dependencies: started 00:49:14 Installing build dependencies: finished with status 'done' 00:49:14 Getting requirements to build wheel: started 00:49:14 Getting requirements to build wheel: finished with status 'done' 00:49:14 Installing backend dependencies: started 00:49:16 Installing backend dependencies: finished with status 'done' 00:49:16 Preparing metadata (pyproject.toml): started 00:49:16 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:16 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.3.dev0) 00:49:16 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0) 00:49:16 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:49:17 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0) 00:49:17 Using cached Django-4.2.13-py3-none-any.whl.metadata (4.1 kB) 00:49:17 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0) 00:49:17 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:49:17 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0) 00:49:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:49:17 Collecting django-csp (from omero-web==5.26.1.dev0) 00:49:17 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:49:17 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0) 00:49:17 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 00:49:17 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0) 00:49:17 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 00:49:17 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0) 00:49:17 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.3.0) 00:49:17 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1) 00:49:17 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.8.2) 00:49:17 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1) 00:49:17 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:17 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:49:17 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:17 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB) 00:49:17 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.18) 00:49:17 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4) 00:49:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0) 00:49:17 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4) 00:49:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1) 00:49:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5) 00:49:17 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3) 00:49:18 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:18 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:49:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2) 00:49:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7) 00:49:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.6.2) 00:49:18 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:49:18 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:49:18 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:49:18 Using cached Django-4.2.13-py3-none-any.whl (8.0 MB) 00:49:18 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 00:49:18 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 00:49:18 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:49:18 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:49:18 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB) 00:49:18 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:49:18 Building wheels for collected packages: omero-web 00:49:18 Building wheel for omero-web (pyproject.toml): started 00:49:19 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:49:19 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2763312 sha256=633eed8c3d5ae10b419e78ef5f14dd62641c90fe546e6716e263cbeaef316fe5 00:49:19 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453 00:49:19 Successfully built omero-web 00:49:20 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:49:26 Successfully installed Django-4.2.13 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.0 typing-extensions-4.12.2 whitenoise-6.6.0 00:49:26 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:49:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:49:27 --2024-06-10 00:49:27-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:27 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... 00:49:27 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 00:49:27 HTTP request sent, awaiting response... 200 OK 00:49:28 Length: 94763 (93K) [text/plain] 00:49:28 Saving to: ‘Figure_To_Pdf.py’ 00:49:28 00:49:28 0K .......... .......... .......... .......... .......... 54% 2.72M 0s 00:49:28 50K .......... .......... .......... .......... .. 100% 7.66M=0.02s 00:49:28 00:49:28 2024-06-10 00:49:28 (3.86 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763] 00:49:28 00:49:28 + chmod 755 Figure_To_Pdf.py 00:49:28 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:49:28 + omero config set omero.db.name OMERO-server 00:49:30 + omero config set omero.db.host pg 00:49:33 + omero config set omero.db.user postgres 00:49:35 + omero config set omero.data.dir /home/omero/omero-server-data 00:49:37 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:49:40 + omero config set omero.db.poolsize 25 00:49:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:49:45 + omero config set omero.security.trustStorePassword changeit 00:49:47 + omero config set omero.mail.config true 00:49:50 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:49:52 + omero config set omero.mail.host smtp.dundee.ac.uk 00:49:55 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:49:57 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:49:59 + omero certificates 00:50:01 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:50:01 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:50:02 + '[' false = true ']' 00:50:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:50:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:50:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:50:02 2024-06-10 00:50:02,585 [ omego.db] DEBUG dbcommand => upgrade 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG dbhost => localhost 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG dbname => OMERO-server 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG dbpass => omero 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG dbuser => omero 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG rootpass => omero 00:50:02 2024-06-10 00:50:02,586 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:50:02 2024-06-10 00:50:02,587 [omego.extern] INFO Executing : omero version 00:50:04 OMERO.py version: 00:50:04 OMERO.server version: 00:50:04 5.6.3-469-5105c09c91-ice36 00:50:04 5.19.3.dev0 00:50:04 2024-06-10 00:50:04,844 [omego.extern] INFO Completed [2.257 s] 00:50:04 2024-06-10 00:50:04,844 [omego.extern] DEBUG Using omero CLI from omero 00:50:04 2024-06-10 00:50:04,844 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:50:04 2024-06-10 00:50:04,844 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:04 2024-06-10 00:50:04,845 [omego.extern] INFO Executing : omero config get --show-password 00:50:07 2024-06-10 00:50:07,154 [omego.extern] INFO Completed [2.309 s] 00:50:07 2024-06-10 00:50:07,154 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:07 2024-06-10 00:50:07,155 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:50:07 2024-06-10 00:50:07,162 [omego.extern] INFO Completed [0.008 s] 00:50:07 2024-06-10 00:50:07,163 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:50:07 2024-06-10 00:50:07,163 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:50:07 00:50:07 2024-06-10 00:50:07,163 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:07 2024-06-10 00:50:07,163 [omego.extern] INFO Executing : omero config get --show-password 00:50:09 2024-06-10 00:50:09,907 [omego.extern] INFO Completed [2.744 s] 00:50:09 2024-06-10 00:50:09,907 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:09 2024-06-10 00:50:09,908 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:50:10 2024-06-10 00:50:10,009 [omego.extern] INFO Completed [0.101 s] 00:50:10 2024-06-10 00:50:10,009 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.7") at port "5432".\n' 00:50:10 2024-06-10 00:50:10,009 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:10 2024-06-10 00:50:10,009 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:10 2024-06-10 00:50:10,009 [omego.extern] INFO Executing : omero config get --show-password 00:50:12 2024-06-10 00:50:12,216 [omego.extern] INFO Completed [2.207 s] 00:50:12 2024-06-10 00:50:12,217 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:12 2024-06-10 00:50:12,217 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:12 2024-06-10 00:50:12,340 [omego.extern] INFO Completed [0.123 s] 00:50:12 2024-06-10 00:50:12,341 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:50:12 2024-06-10 00:50:12,341 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:50:12 2024-06-10 00:50:12,343 [ omego.db] INFO Database is already at OMERO5.4__0 00:50:12 + export LANG=en_US.UTF-8 00:50:12 + LANG=en_US.UTF-8 00:50:12 + export LANGUAGE=en_US:en 00:50:12 + LANGUAGE=en_US:en 00:50:12 + export LC_ALL=en_US.UTF-8 00:50:12 + LC_ALL=en_US.UTF-8 00:50:12 + BUILD_ID=DONT_KILL_ME 00:50:12 + omero admin start 00:50:27 No descriptor given. Using etc/grid/default.xml 00:50:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:50:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:50:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:50:46 Waiting on startup. Use CTRL-C to exit 00:50:46 + omero admin waitup 00:50:49 Waiting on startup. Use CTRL-C to exit 00:50:50 + omero admin diagnostics 00:50:52 00:50:52 ================================================================================ 00:50:52 OMERO Diagnostics (admin) 00:50:52 ================================================================================ 00:50:52 00:50:52 Commands: java -version 17.0.11 (/usr/bin/java) 00:50:52 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:50:52 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:50:52 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:50:52 Commands: psql --version 16.2 (/usr/bin/psql) 00:50:52 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:50:52 00:50:52 Component: OMERO.py 5.19.3.dev0 00:50:52 Component: OMERO.server 5.6.3-469-5105c09c91-ice36 00:50:52 00:50:52 Server: icegridnode running 00:50:52 Server: Blitz-0 active (pid = 51285, enabled) 00:50:52 Server: Indexer-0 active (pid = 51317, enabled) 00:50:52 Server: OMERO.Glacier2 active (pid = 51313, enabled) 00:50:52 Server: OMERO.IceStorm active (pid = 51325, enabled) 00:50:52 Server: Processor-0 activating (enabled) 00:50:52 Server: Tables-0 activating (enabled) 00:50:52 00:50:52 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:50:52 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 00:50:52 Log files: DropBox.log n/a 00:50:52 Log files: FileServer.log n/a 00:50:52 Log files: Indexer-0.log 2.6 KB 00:50:52 Log files: MonitorServer.log n/a 00:50:52 Log files: Processor-0.log 592 B 00:50:52 Log files: Tables-0.log 841 B 00:50:52 Log files: TestDropBox.log n/a 00:50:52 Log files: master.err empty 00:50:52 Log files: master.out 30.1 KB 00:50:52 Log files: Total size 0.06 MB 00:50:52 00:50:52 00:50:52 Environment:OMERO_HOME=(unset) 00:50:52 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:50:52 Environment:OMERO_NODE=(unset) 00:50:52 Environment:OMERO_MASTER=(unset) 00:50:52 Environment:OMERO_USERDIR=(unset) 00:50:52 Environment:OMERO_TMPDIR=(unset) 00:50:52 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:50:52 Environment:PYTHONPATH=(unset) 00:50:52 Environment:ICE_HOME=/opt/ice-3.6.5 00:50:52 Environment:LD_LIBRARY_PATH=(unset) 00:50:52 Environment:DYLD_LIBRARY_PATH=(unset) 00:50:53 00:50:53 OMERO SSL port:4064 00:50:53 OMERO TCP port:4063 00:50:53 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:50:53 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:50:53 00:50:53 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:53 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:53 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:53 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:53 00:50:53 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 10 June 2024 b9bb87ee708f2da9cb02e0f77564023e659a3576 00:50:53 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 10 June 2024 b9bb87ee708f2da9cb02e0f77564023e659a3576 00:50:53 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 10 June 2024 b9bb87ee708f2da9cb02e0f77564023e659a3576 00:50:53 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 10 June 2024 8b01c4faa43c8fc5ea3fdf252cadcfd4660b78ce 00:50:53 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT 00:50:53 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT 00:50:53 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT 00:50:53 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT 00:50:53 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT 00:50:53 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT 00:50:53 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT 00:50:53 + deactivate 00:50:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:50:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:50:53 + export PATH 00:50:53 + unset _OLD_VIRTUAL_PATH 00:50:53 + '[' -n '' ']' 00:50:53 + '[' -n /bin/bash -o -n '' ']' 00:50:53 + hash -r 00:50:53 + '[' -n '' ']' 00:50:53 + unset VIRTUAL_ENV 00:50:53 + '[' '!' '' = nondestructive ']' 00:50:53 + unset -f deactivate 00:50:53 Finished: SUCCESS