13:35:40 Started by user devspace 13:35:40 Running as SYSTEM 13:35:40 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 13:35:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4939719119550669010.sh 13:35:40 + source /home/settings.env 13:35:40 ++ OMERO_DB_HOST=pg 13:35:40 ++ OMERO_DB_USER=postgres 13:35:40 ++ OMERO_DB_PASS= 13:35:40 ++ OMERO_ROOT_PASS=omero 13:35:40 ++ OMERO_DATA_DIR=/OMERO 13:35:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:35:40 + OMERO_DB_NAME=OMERO-server 13:35:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:35:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:35:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:35:40 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:35:40 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 13:35:40 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:35:40 ++ deactivate nondestructive 13:35:40 ++ '[' -n '' ']' 13:35:40 ++ '[' -n '' ']' 13:35:40 ++ hash -r 13:35:40 ++ '[' -n '' ']' 13:35:40 ++ unset VIRTUAL_ENV 13:35:40 ++ unset VIRTUAL_ENV_PROMPT 13:35:40 ++ '[' '!' nondestructive = nondestructive ']' 13:35:40 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:35:40 ++ export VIRTUAL_ENV 13:35:40 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:35:40 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:35:40 ++ export PATH 13:35:40 ++ '[' -n '' ']' 13:35:40 ++ '[' -z '' ']' 13:35:40 ++ _OLD_VIRTUAL_PS1= 13:35:40 ++ PS1='(.venv3) ' 13:35:40 ++ export PS1 13:35:40 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:35:40 ++ export VIRTUAL_ENV_PROMPT 13:35:40 ++ hash -r 13:35:40 + omero admin stop 13:36:24 Server not running 13:36:25 + echo not running 13:36:25 not running 13:36:25 + sleep 5 13:36:30 + deactivate 13:36:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:36:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:36:30 + export PATH 13:36:30 + unset _OLD_VIRTUAL_PATH 13:36:30 + '[' -n '' ']' 13:36:30 + hash -r 13:36:30 + '[' -n '' ']' 13:36:30 + unset VIRTUAL_ENV 13:36:30 + unset VIRTUAL_ENV_PROMPT 13:36:30 + '[' '!' '' = nondestructive ']' 13:36:30 + unset -f deactivate 13:36:30 + rm -rf /home/omero/workspace/OMERO-server/.venv3 13:40:15 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 13:40:38 + '[' false = true ']' 13:40:38 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 13:40:38 Skipping PURGE_DATA:CleanDbAndRepo 13:40:38 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 13:40:49 Copied 1 artifact from "OMERO-build" build number 101 13:40:49 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 91 13:40:50 Copied 2 artifacts from "OMERO-build-build" build number 102 13:40:50 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3582427701317320790.sh 13:40:50 + source /home/settings.env 13:40:50 ++ OMERO_DB_HOST=pg 13:40:50 ++ OMERO_DB_USER=postgres 13:40:50 ++ OMERO_DB_PASS= 13:40:50 ++ OMERO_ROOT_PASS=omero 13:40:50 ++ OMERO_DATA_DIR=/OMERO 13:40:50 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:40:50 + OMERO_DB_NAME=OMERO-server 13:40:50 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:40:50 + mkdir -p /home/omero/omero-server-data 13:40:50 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:40:50 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:40:50 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:40:50 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:40:50 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:40:50 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:40:50 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:40:50 ++ ls OMERO.server-5.6.3-689-9d131db81b-ice36-b101.zip 13:40:50 + ZIP=OMERO.server-5.6.3-689-9d131db81b-ice36-b101.zip 13:40:50 + '[' '!' -z '' ']' 13:40:50 + DIST=OMERO.server-5.6.3-689-9d131db81b-ice36-b101 13:40:50 + unzip OMERO.server-5.6.3-689-9d131db81b-ice36-b101.zip 13:40:50 Archive: OMERO.server-5.6.3-689-9d131db81b-ice36-b101.zip 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/blitz/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/grid/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/profiles/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/error/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/grid/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/janelia/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/matplotlib/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/ncsa_paledit/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/seaborn/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/luts/wcif/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/analysis_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/annotation_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/export_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/figure_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/import_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/scripts/omero/util_scripts/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/server/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/share/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/share/licenses/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/misc/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__1/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__10/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__11/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__2/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__3/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__4/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__5/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__6/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__7/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__8/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3A__9/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3__4/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3__5/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3__6/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO3__7/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4.1__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4.2__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4.2__0/t/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4.3__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4.4__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO4__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.0__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.1__1/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.2__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.3__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4DEV__1/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4DEV__2/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4DEV__3/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/var/ 13:40:50 creating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/var/tmp/ 13:40:50 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/LICENSE.txt 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/backup.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/blitz/mail-senders.example 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/blitz/mail-server.example 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/build.properties 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/env.bat 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/env.sh 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/hibernate.properties 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/ice.config 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/logback-cli.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/logback-indexing-cli.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/logback-indexing.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/logback.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/mime.types 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/node1.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/node2.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/omero.properties 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/profiles/psql 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/rollover.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/Windows.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/error/maintainance.html 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/grid/README 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/grid/default.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/grid/templates.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/grid/windefault.xml 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/ice.config 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/internal.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/master.cfg 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/templates/robot.template 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/etc/testdropbox.config 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/history.rst 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/accessors-smart.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/activation.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aggdesigner-algorithm.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aircompressor.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/annotations.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/antlr.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aopalliance.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/apache-client.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/apiguardian-api.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/arns.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/asm.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/auth.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/avatica-core.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/avatica-metrics.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aws-core.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aws-query-protocol.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/aws-xml-protocol.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/base.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-anim.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-awt-util.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-bridge.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-codec.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-constants.jar 13:40:51 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-css.jar 13:40:52 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-dom.jar 13:40:52 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-ext.jar 13:40:52 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/lib/client/batik-gvt.jar 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inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 13:41:14 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/psql-footer.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/psql-header.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/schema.sql 13:41:15 inflating: OMERO.server-5.6.3-689-9d131db81b-ice36-b101/sql/psql/OMERO5.4__0/views.sql 13:41:15 + rm -f OMERO.server-5.6.3-689-9d131db81b-ice36-b101.zip 13:41:15 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-9d131db81b-ice36-b101 /home/omero/workspace/OMERO-server/OMERO.server 13:41:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:41:15 ++ deactivate nondestructive 13:41:15 ++ '[' -n '' ']' 13:41:15 ++ '[' -n '' ']' 13:41:15 ++ hash -r 13:41:15 ++ '[' -n '' ']' 13:41:15 ++ unset VIRTUAL_ENV 13:41:15 ++ unset VIRTUAL_ENV_PROMPT 13:41:15 ++ '[' '!' nondestructive = nondestructive ']' 13:41:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:41:15 ++ export VIRTUAL_ENV 13:41:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:41:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:41:15 ++ export PATH 13:41:15 ++ '[' -n '' ']' 13:41:15 ++ '[' -z '' ']' 13:41:15 ++ _OLD_VIRTUAL_PS1= 13:41:15 ++ PS1='(.venv3) ' 13:41:15 ++ export PS1 13:41:15 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:41:15 ++ export VIRTUAL_ENV_PROMPT 13:41:15 ++ hash -r 13:41:15 + pip install -U pip 13:41:16 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 13:41:20 Collecting pip 13:41:20 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 13:41:20 Installing collected packages: pip 13:41:20 Attempting uninstall: pip 13:41:20 Found existing installation: pip 22.3.1 13:41:21 Uninstalling pip-22.3.1: 13:41:21 Successfully uninstalled pip-22.3.1 13:41:43 Successfully installed pip-26.2.1 13:41:43 WARNING: There was an error checking the latest version of pip. 13:41:43 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 13:41:44 Collecting zeroc-ice==3.6.5 13:41:45 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 13:41:48 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.0 MB/s 0:00:02 13:41:48 Installing collected packages: zeroc-ice 13:41:52 Successfully installed zeroc-ice-3.6.5 13:41:52 + pip install markdown 13:41:53 Collecting markdown 13:41:53 Using cached markdown-3.11-py3-none-any.whl.metadata (5.1 kB) 13:41:54 Using cached markdown-3.11-py3-none-any.whl (111 kB) 13:41:54 Installing collected packages: markdown 13:41:55 Successfully installed markdown-3.11 13:41:55 + pip install reportlab 13:41:56 Collecting reportlab 13:41:56 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 13:41:56 Collecting pillow>=9.0.0 (from reportlab) 13:41:56 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 13:41:57 Collecting charset-normalizer (from reportlab) 13:41:57 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) 13:41:58 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 13:41:59 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 13:41:59 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) 13:41:59 Installing collected packages: pillow, charset-normalizer, reportlab 13:42:11 13:42:11 Successfully installed charset-normalizer-3.5.2 pillow-12.3.0 reportlab-5.0.1 13:42:11 + pip install pyarrow 13:42:12 Collecting pyarrow 13:42:12 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 13:42:12 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB) 13:42:13 Installing collected packages: pyarrow 13:42:28 Successfully installed pyarrow-25.0.1 13:42:28 + pip install omego 13:42:29 Collecting omego 13:42:29 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 13:42:29 Collecting future (from omego) 13:42:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 13:42:30 Collecting yaclifw>=0.1.1 (from omego) 13:42:30 Using cached yaclifw-0.2.0-py3-none-any.whl 13:42:30 Collecting six (from yaclifw>=0.1.1->omego) 13:42:30 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 13:42:30 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 13:42:30 Using cached future-1.0.0-py3-none-any.whl (491 kB) 13:42:31 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 13:42:31 Installing collected packages: six, future, yaclifw, omego 13:42:42 13:42:42 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 13:42:43 + pip install tables 13:42:44 Collecting tables 13:42:44 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 13:42:44 Collecting numpy>=1.20.0 (from tables) 13:42:44 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 13:42:45 Collecting numexpr>=2.6.2 (from tables) 13:42:45 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 13:42:45 Collecting packaging (from tables) 13:42:45 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 13:42:45 Collecting py-cpuinfo (from tables) 13:42:45 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 13:42:46 Collecting blosc2>=2.3.0 (from tables) 13:42:46 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) 13:42:46 Collecting ndindex (from blosc2>=2.3.0->tables) 13:42:46 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 13:42:46 Collecting msgpack (from blosc2>=2.3.0->tables) 13:42:46 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:42:47 Collecting pydantic (from blosc2>=2.3.0->tables) 13:42:47 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB) 13:42:47 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 13:42:47 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 13:42:47 Collecting rich (from blosc2>=2.3.0->tables) 13:42:48 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 13:42:48 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 13:42:48 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB) 13:42:48 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 13:42:48 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 13:42:48 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 13:42:48 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 13:42:48 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 13:42:48 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 13:42:48 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) 13:42:49 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 13:42:49 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 13:42:49 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 13:42:49 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 13:42:49 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 13:42:49 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 13:42:49 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 13:42:49 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 13:42:50 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables) 13:42:50 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 13:42:51 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 13:42:51 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 13:42:51 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 13:42:51 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 13:42:51 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 13:42:51 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 13:42:51 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 13:42:51 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 13:42:51 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 13:42:51 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB) 13:42:51 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 13:42:51 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 13:42:52 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 13:42:52 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 13:42:52 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 13:42:52 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 13:42:52 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 13:42:52 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 13:42:52 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 13:42:52 Using cached idna-3.20-py3-none-any.whl (69 kB) 13:42:52 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 13:42:52 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 13:42:52 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (477 kB) 13:42:53 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 13:42:53 Using cached packaging-26.3-py3-none-any.whl (129 kB) 13:42:53 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 13:42:53 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB) 13:42:53 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 13:42:53 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 13:42:53 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 13:42:53 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 13:42:53 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 13:42:53 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 13:42:53 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 13:42:53 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB) 13:42:54 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 13:43:53 13:43:53 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.14.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.3 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0 13:43:53 + pip install jinja2 13:43:55 Collecting jinja2 13:43:55 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 13:43:55 Collecting MarkupSafe>=2.0 (from jinja2) 13:43:55 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 13:43:55 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 13:43:55 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 13:43:55 Installing collected packages: MarkupSafe, jinja2 13:43:56 13:43:56 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6 13:43:56 + pip install omero-py 13:43:57 Collecting omero-py 13:43:57 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 13:43:58 Collecting appdirs (from omero-py) 13:43:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 13:43:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 13:43:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 13:43:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 13:43:58 Collecting PyYAML (from omero-py) 13:43:58 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 13:43:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 13:43:58 Collecting requests (from omero-py) 13:43:58 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 13:43:58 Collecting portalocker (from omero-py) 13:43:58 Using cached portalocker-4.4.0-py3-none-any.whl.metadata (10 kB) 13:43:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.2) 13:43:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20) 13:43:58 Collecting urllib3<3,>=1.26 (from requests->omero-py) 13:43:58 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) 13:43:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 13:43:58 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 13:43:59 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 13:43:59 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 13:43:59 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 13:43:59 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 13:43:59 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 13:43:59 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 13:44:20 13:44:20 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 urllib3-2.8.0 13:44:20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 13:44:21 Collecting omero-metadata 13:44:21 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-kfhz2t7p/omero-metadata_dfae3307f5cb45ec81b749ca0e6a8ef7 13:44:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-kfhz2t7p/omero-metadata_dfae3307f5cb45ec81b749ca0e6a8ef7 13:44:23 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 0edde43b55513d5f239b91541c21c84c72f333f0 13:44:23 Installing build dependencies: started 13:44:25 Installing build dependencies: finished with status 'done' 13:44:25 Getting requirements to build wheel: started 13:44:25 Getting requirements to build wheel: finished with status 'done' 13:44:25 Preparing metadata (pyproject.toml): started 13:44:25 Preparing metadata (pyproject.toml): finished with status 'done' 13:44:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 13:44:26 Collecting pandas<3,>=2 (from omero-metadata) 13:44:26 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 13:44:26 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 13:44:26 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 13:44:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 13:44:26 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 13:44:26 Using cached pytz-2026.5-py2.py3-none-any.whl.metadata (22 kB) 13:44:26 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 13:44:26 Using cached tzdata-2026.5-py2.py3-none-any.whl.metadata (1.4 kB) 13:44:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 13:44:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 13:44:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 13:44:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 13:44:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 13:44:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 13:44:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.0) 13:44:26 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 13:44:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2) 13:44:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) 13:44:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) 13:44:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 13:44:27 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 13:44:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 13:44:27 Using cached pytz-2026.5-py2.py3-none-any.whl (506 kB) 13:44:27 Using cached tzdata-2026.5-py2.py3-none-any.whl (347 kB) 13:44:27 Building wheels for collected packages: omero-metadata 13:44:27 Building wheel for omero-metadata (pyproject.toml): started 13:44:27 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 13:44:27 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=861a5476ceaf0739e69fb9f20cc055903de809b62fc97df01e59727bbb5e275e 13:44:27 Stored in directory: /tmp/pip-ephem-wheel-cache-lb4dcra4/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 13:44:27 Successfully built omero-metadata 13:44:28 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 13:45:24 13:45:24 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.5 tzdata-2026.5 13:45:24 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 13:45:25 Collecting omero-cli-render 13:45:25 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-1e43vr86/omero-cli-render_1c18d6fa200a4246b26e637946b942a0 13:45:25 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-1e43vr86/omero-cli-render_1c18d6fa200a4246b26e637946b942a0 13:45:27 Running command git checkout -b merge_ci --track origin/merge_ci 13:45:27 Switched to a new branch 'merge_ci' 13:45:27 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:45:27 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 5a86f04f624b23739dd6bbc3c91197980bf7258b 13:45:27 Installing build dependencies: started 13:45:29 Installing build dependencies: finished with status 'done' 13:45:29 Getting requirements to build wheel: started 13:45:29 Getting requirements to build wheel: finished with status 'done' 13:45:29 Preparing metadata (pyproject.toml): started 13:45:29 Preparing metadata (pyproject.toml): finished with status 'done' 13:45:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 13:45:29 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 13:45:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 13:45:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 13:45:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 13:45:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 13:45:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 13:45:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 13:45:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.0) 13:45:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2) 13:45:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) 13:45:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) 13:45:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 13:45:29 Building wheels for collected packages: omero-cli-render 13:45:29 Building wheel for omero-cli-render (pyproject.toml): started 13:45:30 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 13:45:30 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=ddc9a656f3603e4d6393a994643baab2cc50b2982605c2590380d1f8a9debf45 13:45:30 Stored in directory: /tmp/pip-ephem-wheel-cache-468ons_a/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 13:45:30 Successfully built omero-cli-render 13:45:30 Installing collected packages: omero-cli-render 13:45:30 Successfully installed omero-cli-render-0.8.2.dev0 13:45:30 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 13:45:31 Collecting omero-cli-duplicate 13:45:31 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-mtc31x1s/omero-cli-duplicate_e1c290d478a54d56b3de9a39699d9641 13:45:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-mtc31x1s/omero-cli-duplicate_e1c290d478a54d56b3de9a39699d9641 13:45:32 Running command git checkout -b merge_ci --track origin/merge_ci 13:45:33 Switched to a new branch 'merge_ci' 13:45:33 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:45:33 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e0ba68ab134d0c1ca92fda2821c1754962cbb289 13:45:33 Installing build dependencies: started 13:45:34 Installing build dependencies: finished with status 'done' 13:45:34 Getting requirements to build wheel: started 13:45:34 Getting requirements to build wheel: finished with status 'done' 13:45:34 Preparing metadata (pyproject.toml): started 13:45:35 Preparing metadata (pyproject.toml): finished with status 'done' 13:45:35 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 13:45:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 13:45:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 13:45:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 13:45:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 13:45:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 13:45:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 13:45:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 13:45:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.0) 13:45:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2) 13:45:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) 13:45:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) 13:45:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 13:45:35 Building wheels for collected packages: omero-cli-duplicate 13:45:35 Building wheel for omero-cli-duplicate (pyproject.toml): started 13:45:35 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 13:45:35 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=dc57310116fc56878bd7f655c620600d274ccbe4891ded94cf09356a0626de35 13:45:35 Stored in directory: /tmp/pip-ephem-wheel-cache-9mnanlgv/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 13:45:35 Successfully built omero-cli-duplicate 13:45:35 Installing collected packages: omero-cli-duplicate 13:45:35 Successfully installed omero-cli-duplicate-0.4.1.dev0 13:45:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 13:45:36 Collecting omero-cli-zarr 13:45:36 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-2lo6_pbz/omero-cli-zarr_6ff99dc55b734df4833153a313e2dc6b 13:45:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-2lo6_pbz/omero-cli-zarr_6ff99dc55b734df4833153a313e2dc6b 13:45:37 Running command git checkout -b merge_ci --track origin/merge_ci 13:45:38 Switched to a new branch 'merge_ci' 13:45:38 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:45:38 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 30ecb3026426ea576af709b0d4b2d572f2ab15db 13:45:38 Installing build dependencies: started 13:45:39 Installing build dependencies: finished with status 'done' 13:45:39 Getting requirements to build wheel: started 13:45:39 Getting requirements to build wheel: finished with status 'done' 13:45:39 Installing backend dependencies: started 13:45:41 Installing backend dependencies: finished with status 'done' 13:45:41 Preparing metadata (pyproject.toml): started 13:45:42 Preparing metadata (pyproject.toml): finished with status 'done' 13:45:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 13:45:42 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 13:45:42 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 13:45:42 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 13:45:42 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:42 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 13:45:42 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:42 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 13:45:42 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:45:43 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) 13:45:43 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:43 Using cached aiohttp-3.14.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:45:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 13:45:44 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 13:45:44 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 13:45:44 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 13:45:44 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 13:45:44 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 13:45:44 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:45:44 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 13:45:45 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:45:45 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 13:45:45 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 13:45:45 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:45:45 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 13:45:45 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 13:45:45 Collecting importlib_metadata>=4.13.0 (from 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pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 13:45:52 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB) 13:45:52 Using cached aiobotocore-3.9.2-py3-none-any.whl (102 kB) 13:45:52 Using cached aiohttp-3.14.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB) 13:45:52 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 13:45:52 Using cached botocore-1.43.106-py3-none-any.whl (16.0 MB) 13:45:52 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 13:45:52 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (320 kB) 13:45:52 Using cached wrapt-2.5.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (239 kB) 13:45:52 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB) 13:45:52 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 13:45:52 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 13:45:52 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 13:45:52 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 13:45:52 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB) 13:45:53 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 13:45:53 Using cached imageio-2.38.0-py3-none-any.whl (328 kB) 13:45:53 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB) 13:45:53 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 13:45:53 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 13:45:53 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 13:45:53 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 13:45:53 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 13:45:53 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 13:45:53 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB) 13:45:53 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 13:45:54 Using cached zipp-4.1.1-py3-none-any.whl (10 kB) 13:45:54 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 13:45:54 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 13:45:54 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 13:45:54 Building wheels for collected packages: omero-cli-zarr 13:45:54 Building wheel for omero-cli-zarr (pyproject.toml): started 13:45:55 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 13:45:55 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g30ecb30-py3-none-any.whl size=39536 sha256=fb3cb1f385d0c2c65000b9a07df629e96fc5e6011e98b565010aaf5449a0b2de 13:45:55 Stored in directory: /tmp/pip-ephem-wheel-cache-jsk5qssg/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 13:45:55 Successfully built omero-cli-zarr 13:45:55 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 13:46:35 Attempting uninstall: pydantic-core 13:46:35 Found existing installation: pydantic_core 2.46.5 13:46:35 Uninstalling pydantic_core-2.46.5: 13:46:35 Successfully uninstalled pydantic_core-2.46.5 13:47:14 Attempting uninstall: pydantic 13:47:15 Found existing installation: pydantic 2.13.5 13:47:15 Uninstalling pydantic-2.13.5: 13:47:15 Successfully uninstalled pydantic-2.13.5 13:48:01 13:48:01 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.2 aiohappyeyeballs-2.7.1 aiohttp-3.14.4 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.106 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.0 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-6.9.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g30ecb30 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.5.0 yarl-1.25.1 zarr-3.1.6 zipp-4.1.1 13:48:01 + pip install omero-certificates 13:48:02 Collecting omero-certificates 13:48:03 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 13:48:03 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 13:48:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 13:48:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 13:48:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 13:48:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 13:48:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 13:48:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 13:48:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 13:48:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.0) 13:48:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2) 13:48:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) 13:48:03 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) 13:48:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 13:48:03 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 13:48:03 Installing collected packages: omero-certificates 13:48:03 Successfully installed omero-certificates-0.4.0 13:48:03 + for x in *.tar.gz 13:48:03 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 13:48:04 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 13:48:04 Installing build dependencies: started 13:48:06 Installing build dependencies: finished with status 'done' 13:48:06 Getting requirements to build wheel: started 13:48:06 Getting requirements to build wheel: finished with status 'done' 13:48:06 Preparing metadata (pyproject.toml): started 13:48:06 Preparing metadata (pyproject.toml): finished with status 'done' 13:48:06 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 13:48:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 13:48:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 13:48:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 13:48:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 13:48:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 13:48:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 13:48:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 13:48:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.0) 13:48:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2) 13:48:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) 13:48:06 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) 13:48:06 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 13:48:07 Building wheels for collected packages: omero-dropbox 13:48:07 Building wheel for omero-dropbox (pyproject.toml): started 13:48:07 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 13:48:07 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=9c8b43187febd7975bdd10f4ca21889752e39dade6a7c21611c1d60172042ee0 13:48:07 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 13:48:07 Successfully built omero-dropbox 13:48:07 Installing collected packages: omero-dropbox 13:48:08 Successfully installed omero-dropbox-5.7.1.dev0 13:48:08 + for x in *.tar.gz 13:48:08 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 13:48:09 Processing ./omero_marshal-0.9.2.dev0.tar.gz 13:48:09 Installing build dependencies: started 13:48:10 Installing build dependencies: finished with status 'done' 13:48:10 Getting requirements to build wheel: started 13:48:11 Getting requirements to build wheel: finished with status 'done' 13:48:11 Preparing metadata (pyproject.toml): started 13:48:11 Preparing metadata (pyproject.toml): finished with status 'done' 13:48:11 Building wheels for collected packages: omero_marshal 13:48:11 Building wheel for omero_marshal (pyproject.toml): started 13:48:11 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 13:48:11 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=3283b085212e49ffc18e734f209df13a93966bf84e434f98bcaaa131d5b1321f 13:48:11 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 13:48:11 Successfully built omero_marshal 13:48:12 Installing collected packages: omero_marshal 13:48:14 Successfully installed omero_marshal-0.9.2.dev0 13:48:14 + for x in *.tar.gz 13:48:14 + pip install -U omero_py-5.23.1.dev0.tar.gz 13:48:15 Processing ./omero_py-5.23.1.dev0.tar.gz 13:48:15 Installing build dependencies: started 13:48:17 Installing build dependencies: finished with status 'done' 13:48:17 Getting requirements to build wheel: started 13:48:17 Getting requirements to build wheel: finished with status 'done' 13:48:17 Preparing metadata (pyproject.toml): started 13:48:18 Preparing metadata (pyproject.toml): finished with status 'done' 13:48:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 13:48:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 13:48:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 13:48:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 13:48:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 13:48:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 13:48:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 13:48:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.0) 13:48:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2) 13:48:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) 13:48:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) 13:48:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 13:48:18 Building wheels for collected packages: omero-py 13:48:18 Building wheel for omero-py (pyproject.toml): started 13:48:19 Building wheel for omero-py (pyproject.toml): finished with status 'done' 13:48:19 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787194 sha256=bca8315987366b726d7bd171c43a406f21b09f67dcc3a548f62300e8c4d91bc2 13:48:19 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 13:48:19 Successfully built omero-py 13:48:19 Installing collected packages: omero-py 13:48:19 Attempting uninstall: omero-py 13:48:19 Found existing installation: omero-py 5.23.0 13:48:20 Uninstalling omero-py-5.23.0: 13:48:32 Successfully uninstalled omero-py-5.23.0 13:48:52 Successfully installed omero-py-5.23.1.dev0 13:48:52 + for x in *.tar.gz 13:48:52 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 13:48:53 Processing ./omero_scripts-5.10.1.dev0.tar.gz 13:48:53 Installing build dependencies: started 13:48:54 Installing build dependencies: finished with status 'done' 13:48:54 Getting requirements to build wheel: started 13:48:55 Getting requirements to build wheel: finished with status 'done' 13:48:55 Preparing metadata (pyproject.toml): started 13:48:55 Preparing metadata (pyproject.toml): finished with status 'done' 13:48:55 Building wheels for collected packages: omero-scripts 13:48:55 Building wheel for omero-scripts (pyproject.toml): started 13:48:55 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 13:48:55 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=28e655785351993e3ea6a2f34bc8fe744f8442eab9b833097ace815dbae2bfa9 13:48:55 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 13:48:55 Successfully built omero-scripts 13:48:56 Installing collected packages: omero-scripts 13:48:57 Successfully installed omero-scripts-5.10.1.dev0 13:48:57 + for x in *.tar.gz 13:48:57 + pip install -U omero_web-5.33.3.dev0.tar.gz 13:48:58 Processing ./omero_web-5.33.3.dev0.tar.gz 13:48:58 Installing build dependencies: started 13:48:59 Installing build dependencies: finished with status 'done' 13:48:59 Getting requirements to build wheel: started 13:49:00 Getting requirements to build wheel: finished with status 'done' 13:49:00 Preparing metadata (pyproject.toml): started 13:49:00 Preparing metadata (pyproject.toml): finished with status 'done' 13:49:00 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) 13:49:00 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) 13:49:00 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 13:49:01 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) 13:49:01 Downloading django-5.2.18-py3-none-any.whl.metadata (4.1 kB) 13:49:01 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) 13:49:01 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 13:49:01 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) 13:49:01 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 13:49:01 Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) 13:49:01 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 13:49:02 Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) 13:49:02 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 13:49:02 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) 13:49:02 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (12.3.0) 13:49:02 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.5) 13:49:02 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.0) 13:49:02 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) 13:49:02 Collecting importlib-resources (from omero-web==5.33.3.dev0) 13:49:02 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 13:49:02 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 13:49:02 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 13:49:02 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 13:49:02 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 13:49:02 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (65.5.1) 13:49:02 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) 13:49:02 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 13:49:02 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) 13:49:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) 13:49:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) 13:49:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) 13:49:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) 13:49:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) 13:49:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.2) 13:49:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) 13:49:02 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) 13:49:02 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.7.22) 13:49:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 13:49:02 Downloading django-5.2.18-py3-none-any.whl (8.3 MB) 13:49:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 13.8 MB/s 0:00:00 13:49:03 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 13:49:03 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 13:49:03 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 13:49:03 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 13:49:03 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 13:49:03 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 13:49:03 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 13:49:03 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 13:49:04 Building wheels for collected packages: omero-web 13:49:04 Building wheel for omero-web (pyproject.toml): started 13:49:05 Building wheel for omero-web (pyproject.toml): finished with status 'done' 13:49:05 Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2821707 sha256=b6ad1100a01a49894f4e086c9f4c8d48ef03ad0c0e200c5eccda5edcaae97ba4 13:49:05 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 13:49:05 Successfully built omero-web 13:49:05 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 13:50:17 13:50:17 Successfully installed Django-5.2.18 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 13:50:18 + omero config set omero.db.name OMERO-server 13:50:28 + omero config set omero.db.host pg 13:50:33 + omero config set omero.db.user postgres 13:50:39 + omero config set omero.data.dir /home/omero/omero-server-data 13:50:44 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 13:50:49 + omero config set omero.db.poolsize 25 13:50:54 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 13:51:00 + omero config set omero.security.trustStorePassword changeit 13:51:05 + omero config set omero.mail.config true 13:51:11 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 13:51:16 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 13:51:22 + omero certificates 13:51:27 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 13:51:27 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 13:51:27 + '[' false = true ']' 13:51:27 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 13:51:27 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 13:51:27 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 13:51:28 2026-10-06 13:51:28,002 [ omego.db] DEBUG dbcommand => upgrade 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG dbhost => localhost 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG dbname => OMERO-server 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG dbpass => omero 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG dbuser => omero 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG rootpass => omero 13:51:28 2026-10-06 13:51:28,003 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 13:51:28 2026-10-06 13:51:28,005 [omego.extern] INFO Executing : omero version 13:51:33 OMERO.py version: 13:51:33 OMERO.server version: 13:51:33 5.6.3-689-9d131db81b-ice36-b101 13:51:33 5.23.1.dev0 13:51:33 2026-10-06 13:51:33,787 [omego.extern] INFO Completed [5.783 s] 13:51:33 2026-10-06 13:51:33,788 [omego.extern] DEBUG Using omero CLI from omero 13:51:33 2026-10-06 13:51:33,788 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 13:51:33 2026-10-06 13:51:33,788 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:51:33 2026-10-06 13:51:33,788 [omego.extern] INFO Executing : omero config get --show-password 13:51:39 2026-10-06 13:51:39,238 [omego.extern] INFO Completed [5.450 s] 13:51:39 2026-10-06 13:51:39,238 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:51:39 2026-10-06 13:51:39,238 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 13:51:39 2026-10-06 13:51:39,457 [omego.extern] INFO Completed [0.219 s] 13:51:39 2026-10-06 13:51:39,458 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 13:51:39 2026-10-06 13:51:39,458 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 13:51:39 13:51:39 2026-10-06 13:51:39,458 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:51:39 2026-10-06 13:51:39,458 [omego.extern] INFO Executing : omero config get --show-password 13:51:44 2026-10-06 13:51:44,952 [omego.extern] INFO Completed [5.494 s] 13:51:44 2026-10-06 13:51:44,952 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:51:44 2026-10-06 13:51:44,952 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 13:51:45 2026-10-06 13:51:45,083 [omego.extern] INFO Completed [0.131 s] 13:51:45 2026-10-06 13:51:45,083 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n' 13:51:45 2026-10-06 13:51:45,083 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:51:45 2026-10-06 13:51:45,083 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:51:45 2026-10-06 13:51:45,083 [omego.extern] INFO Executing : omero config get --show-password 13:51:50 2026-10-06 13:51:50,446 [omego.extern] INFO Completed [5.362 s] 13:51:50 2026-10-06 13:51:50,446 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:51:50 2026-10-06 13:51:50,446 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:51:51 2026-10-06 13:51:51,043 [omego.extern] INFO Completed [0.597 s] 13:51:51 2026-10-06 13:51:51,043 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 13:51:51 2026-10-06 13:51:51,043 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 13:51:51 2026-10-06 13:51:51,103 [ omego.db] INFO Database is already at OMERO5.4__0 13:51:51 + export LANG=en_US.UTF-8 13:51:51 + LANG=en_US.UTF-8 13:51:51 + export LANGUAGE=en_US:en 13:51:51 + LANGUAGE=en_US:en 13:51:51 + export LC_ALL=en_US.UTF-8 13:51:51 + LC_ALL=en_US.UTF-8 13:51:51 + BUILD_ID=DONT_KILL_ME 13:51:51 + omero admin start 13:52:04 No descriptor given. Using etc/grid/default.xml 13:52:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 13:52:20 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 13:52:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 13:52:20 Waiting on startup. Use CTRL-C to exit 13:52:21 + omero admin waitup 13:52:27 Waiting on startup. Use CTRL-C to exit 13:52:28 + omero admin diagnostics 13:52:34 13:52:34 ================================================================================ 13:52:34 OMERO Diagnostics (admin) 13:52:34 ================================================================================ 13:52:34 13:52:34 Commands: java -version 21.0.12 (/usr/bin/java) 13:52:34 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 13:52:34 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 13:52:34 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 13:52:34 Commands: psql --version 16.14 (/usr/bin/psql) 13:52:34 Commands: openssl version 3.5.527 (/usr/bin/openssl) 13:52:34 13:52:34 Component: OMERO.py 5.23.1.dev0 13:52:34 Component: OMERO.server 5.6.3-689-9d131db81b-ice36-b101 13:52:34 13:52:34 Server: icegridnode running 13:52:34 Server: Blitz-0 active (pid = 1226, enabled) 13:52:34 Server: Indexer-0 active (pid = 1247, enabled) 13:52:34 Server: OMERO.Glacier2 active (pid = 1265, enabled) 13:52:34 Server: OMERO.IceStorm active (pid = 1248, enabled) 13:52:34 Server: Processor-0 active (pid = 1245, enabled) 13:52:34 Server: Tables-0 active (pid = 1280, enabled) 13:52:34 13:52:34 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 13:52:34 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 13:52:34 Log files: DropBox.log n/a 13:52:34 Log files: FileServer.log n/a 13:52:34 Log files: Indexer-0.log 2.6 KB 13:52:34 Log files: MonitorServer.log n/a 13:52:34 Log files: Processor-0.log 856 B 13:52:34 Log files: Tables-0.log 1.1 KB 13:52:34 Log files: TestDropBox.log n/a 13:52:34 Log files: master.err empty 13:52:34 Log files: master.out 30.7 KB 13:52:34 Log files: Total size 0.07 MB 13:52:34 13:52:34 13:52:34 Environment:OMERO_HOME=(unset) 13:52:34 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:52:34 Environment:OMERO_NODE=(unset) 13:52:34 Environment:OMERO_MASTER=(unset) 13:52:34 Environment:OMERO_USERDIR=(unset) 13:52:34 Environment:OMERO_TMPDIR=(unset) 13:52:34 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:52:34 Environment:PYTHONPATH=(unset) 13:52:34 Environment:ICE_HOME=/opt/ice-3.6.5 13:52:34 Environment:LD_LIBRARY_PATH=(unset) 13:52:34 Environment:DYLD_LIBRARY_PATH=(unset) 13:52:34 13:52:34 OMERO SSL port:4064 13:52:34 OMERO TCP port:4063 13:52:34 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 13:52:34 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 13:52:34 13:52:34 JVM settings: Blitz-${index} -Xmx5007m 13:52:34 JVM settings: Indexer-${index} -Xmx3338m 13:52:34 JVM settings: PixelData-${index} -Xmx5007m 13:52:34 JVM settings: Repository-${index} -Xmx3338m 13:52:35 13:52:35 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:52:35 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:52:35 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:52:35 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 13:52:35 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 13:52:35 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 13:52:35 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 13:52:35 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 13:52:35 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 13:52:35 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 13:52:35 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 13:52:35 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT f09ee0f6986f3744f7b080c851a8f9a3933d9834 13:52:35 + deactivate 13:52:35 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:52:35 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:52:35 + export PATH 13:52:35 + unset _OLD_VIRTUAL_PATH 13:52:35 + '[' -n '' ']' 13:52:35 + hash -r 13:52:35 + '[' -n '' ']' 13:52:35 + unset VIRTUAL_ENV 13:52:35 + unset VIRTUAL_ENV_PROMPT 13:52:35 + '[' '!' '' = nondestructive ']' 13:52:35 + unset -f deactivate 13:52:36 Finished: SUCCESS