23:50:24 Started by upstream project "Trigger" build number 125 23:50:24 originally caused by: 23:50:24 Started by timer 23:50:24 Running as SYSTEM 23:50:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 23:50:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4151724040626792507.sh 23:50:24 + source /home/settings.env 23:50:24 ++ OMERO_DB_HOST=pg 23:50:24 ++ OMERO_DB_USER=postgres 23:50:24 ++ OMERO_DB_PASS= 23:50:24 ++ OMERO_ROOT_PASS=omero 23:50:24 ++ OMERO_DATA_DIR=/OMERO 23:50:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:50:24 + OMERO_DB_NAME=OMERO-server 23:50:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:50:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:50:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:50:24 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:50:24 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 23:50:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:50:24 ++ deactivate nondestructive 23:50:24 ++ '[' -n '' ']' 23:50:24 ++ '[' -n '' ']' 23:50:24 ++ hash -r 23:50:24 ++ '[' -n '' ']' 23:50:24 ++ unset VIRTUAL_ENV 23:50:24 ++ unset VIRTUAL_ENV_PROMPT 23:50:24 ++ '[' '!' nondestructive = nondestructive ']' 23:50:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:50:24 ++ export VIRTUAL_ENV 23:50:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:50:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:50:24 ++ export PATH 23:50:24 ++ '[' -n '' ']' 23:50:24 ++ '[' -z '' ']' 23:50:24 ++ _OLD_VIRTUAL_PS1= 23:50:24 ++ PS1='(.venv3) ' 23:50:24 ++ export PS1 23:50:24 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:50:24 ++ export VIRTUAL_ENV_PROMPT 23:50:24 ++ hash -r 23:50:24 + omero admin stop 23:51:00 Waiting on shutdown. Use CTRL-C to exit 23:51:00 .+ sleep 5 23:51:16 + deactivate 23:51:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 23:51:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:51:16 + export PATH 23:51:16 + unset _OLD_VIRTUAL_PATH 23:51:16 + '[' -n '' ']' 23:51:16 + hash -r 23:51:16 + '[' -n '' ']' 23:51:16 + unset VIRTUAL_ENV 23:51:16 + unset VIRTUAL_ENV_PROMPT 23:51:16 + '[' '!' '' = nondestructive ']' 23:51:16 + unset -f deactivate 23:51:16 + rm -rf /home/omero/workspace/OMERO-server/.venv3 23:54:13 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 23:54:36 + '[' false = true ']' 23:54:36 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 23:54:36 Skipping PURGE_DATA:CleanDbAndRepo 23:54:36 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 23:54:46 Copied 1 artifact from "OMERO-build" build number 106 23:54:46 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 96 23:54:46 Copied 2 artifacts from "OMERO-build-build" build number 107 23:54:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1371193970213003545.sh 23:54:46 + source /home/settings.env 23:54:46 ++ OMERO_DB_HOST=pg 23:54:46 ++ OMERO_DB_USER=postgres 23:54:46 ++ OMERO_DB_PASS= 23:54:46 ++ OMERO_ROOT_PASS=omero 23:54:46 ++ OMERO_DATA_DIR=/OMERO 23:54:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:54:46 + OMERO_DB_NAME=OMERO-server 23:54:46 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:54:46 + mkdir -p /home/omero/omero-server-data 23:54:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:54:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:54:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:54:46 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:54:46 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:54:46 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:54:46 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:54:46 ++ ls OMERO.server-5.6.3-689-6cbc390beb-ice36-b106.zip 23:54:46 + ZIP=OMERO.server-5.6.3-689-6cbc390beb-ice36-b106.zip 23:54:46 + '[' '!' -z '' ']' 23:54:46 + DIST=OMERO.server-5.6.3-689-6cbc390beb-ice36-b106 23:54:46 + unzip OMERO.server-5.6.3-689-6cbc390beb-ice36-b106.zip 23:54:46 Archive: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106.zip 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/ 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/ 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/blitz/ 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/grid/ 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/profiles/ 23:54:46 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/error/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/grid/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/janelia/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/matplotlib/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/ncsa_paledit/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/seaborn/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/luts/wcif/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/analysis_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/annotation_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/export_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/figure_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/import_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/scripts/omero/util_scripts/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/server/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/share/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/share/licenses/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/misc/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__1/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__10/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__11/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__2/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__3/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__4/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__5/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__6/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__7/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__8/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3A__9/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3__4/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3__5/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3__6/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO3__7/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4.1__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4.2__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4.2__0/t/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4.3__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4.4__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO4__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.0__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.1__1/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.2__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.3__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4DEV__1/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4DEV__2/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4DEV__3/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/var/ 23:54:47 creating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/var/tmp/ 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/LICENSE.txt 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/backup.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/blitz/mail-senders.example 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/blitz/mail-server.example 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/build.properties 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/env.bat 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/env.sh 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/hibernate.properties 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/ice.config 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/logback-cli.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/logback-indexing-cli.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/logback-indexing.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/logback.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/mime.types 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/node1.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/node2.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/omero.properties 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/profiles/psql 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/rollover.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/Windows.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/error/maintainance.html 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/grid/README 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/grid/default.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/grid/templates.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/grid/windefault.xml 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/ice.config 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/internal.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/master.cfg 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/templates/robot.template 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/etc/testdropbox.config 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/history.rst 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/accessors-smart.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/activation.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aggdesigner-algorithm.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aircompressor.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/annotations.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/antlr.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aopalliance.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/apache-client.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/apiguardian-api.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/arns.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/asm.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/auth.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/avatica-core.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/avatica-metrics.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aws-core.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aws-query-protocol.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/aws-xml-protocol.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/base.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-anim.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-awt-util.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-bridge.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-codec.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-constants.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-css.jar 23:54:47 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-dom.jar 23:54:48 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-ext.jar 23:54:48 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/lib/client/batik-gvt.jar 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inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/psql-footer.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/psql-header.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/schema.sql 23:55:06 inflating: OMERO.server-5.6.3-689-6cbc390beb-ice36-b106/sql/psql/OMERO5.4__0/views.sql 23:55:06 + rm -f OMERO.server-5.6.3-689-6cbc390beb-ice36-b106.zip 23:55:06 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-6cbc390beb-ice36-b106 /home/omero/workspace/OMERO-server/OMERO.server 23:55:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:55:06 ++ deactivate nondestructive 23:55:06 ++ '[' -n '' ']' 23:55:06 ++ '[' -n '' ']' 23:55:06 ++ hash -r 23:55:06 ++ '[' -n '' ']' 23:55:06 ++ unset VIRTUAL_ENV 23:55:06 ++ unset VIRTUAL_ENV_PROMPT 23:55:06 ++ '[' '!' nondestructive = nondestructive ']' 23:55:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:55:06 ++ export VIRTUAL_ENV 23:55:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:55:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:55:06 ++ export PATH 23:55:06 ++ '[' -n '' ']' 23:55:06 ++ '[' -z '' ']' 23:55:06 ++ _OLD_VIRTUAL_PS1= 23:55:06 ++ PS1='(.venv3) ' 23:55:06 ++ export PS1 23:55:06 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:55:06 ++ export VIRTUAL_ENV_PROMPT 23:55:06 ++ hash -r 23:55:06 + pip install -U pip 23:55:07 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 23:55:07 Collecting pip 23:55:07 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 23:55:08 Installing collected packages: pip 23:55:08 Attempting uninstall: pip 23:55:08 Found existing installation: pip 22.3.1 23:55:08 Uninstalling pip-22.3.1: 23:55:09 Successfully uninstalled pip-22.3.1 23:55:24 Successfully installed pip-26.2.1 23:55:24 WARNING: There was an error checking the latest version of pip. 23:55:24 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 23:55:25 Collecting zeroc-ice==3.6.5 23:55:25 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 23:55:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.5 MB/s 0:00:02 23:55:28 Installing collected packages: zeroc-ice 23:55:31 Successfully installed zeroc-ice-3.6.5 23:55:31 + pip install markdown 23:55:32 Collecting markdown 23:55:32 Using cached markdown-3.11-py3-none-any.whl.metadata (5.1 kB) 23:55:32 Using cached markdown-3.11-py3-none-any.whl (111 kB) 23:55:33 Installing collected packages: markdown 23:55:33 Successfully installed markdown-3.11 23:55:33 + pip install reportlab 23:55:35 Collecting reportlab 23:55:35 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 23:55:35 Collecting pillow>=9.0.0 (from reportlab) 23:55:35 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 23:55:35 Collecting charset-normalizer (from reportlab) 23:55:35 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) 23:55:35 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 23:55:35 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 23:55:36 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) 23:55:36 Installing collected packages: pillow, charset-normalizer, reportlab 23:55:46 23:55:46 Successfully installed charset-normalizer-3.5.2 pillow-12.3.0 reportlab-5.0.1 23:55:46 + pip install pyarrow 23:55:47 Collecting pyarrow 23:55:47 Using cached pyarrow-26.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 23:55:47 Using cached pyarrow-26.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (53.9 MB) 23:55:47 Installing collected packages: pyarrow 23:55:57 Successfully installed pyarrow-26.0.0 23:55:58 + pip install omego 23:55:58 Collecting omego 23:55:59 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 23:55:59 Collecting future (from omego) 23:55:59 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 23:55:59 Collecting yaclifw>=0.1.1 (from omego) 23:55:59 Using cached yaclifw-0.2.0-py3-none-any.whl 23:55:59 Collecting six (from yaclifw>=0.1.1->omego) 23:55:59 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 23:55:59 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 23:55:59 Using cached future-1.0.0-py3-none-any.whl (491 kB) 23:55:59 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 23:56:00 Installing collected packages: six, future, yaclifw, omego 23:56:06 23:56:06 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 23:56:06 + pip install tables 23:56:07 Collecting tables 23:56:07 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 23:56:07 Collecting numpy>=1.20.0 (from tables) 23:56:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 23:56:07 Collecting numexpr>=2.6.2 (from tables) 23:56:07 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 23:56:08 Collecting packaging (from tables) 23:56:08 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 23:56:08 Collecting py-cpuinfo (from tables) 23:56:08 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 23:56:08 Collecting blosc2>=2.3.0 (from tables) 23:56:08 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) 23:56:08 Collecting ndindex (from blosc2>=2.3.0->tables) 23:56:08 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 23:56:08 Collecting msgpack (from blosc2>=2.3.0->tables) 23:56:08 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:56:09 Collecting pydantic (from blosc2>=2.3.0->tables) 23:56:09 Using cached pydantic-2.14.0-py3-none-any.whl.metadata (131 kB) 23:56:09 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 23:56:09 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 23:56:09 Collecting rich (from blosc2>=2.3.0->tables) 23:56:09 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 23:56:09 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 23:56:09 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB) 23:56:09 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 23:56:09 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 23:56:09 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 23:56:09 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 23:56:10 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 23:56:10 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) 23:56:10 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 23:56:10 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 23:56:10 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 23:56:10 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 23:56:10 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 23:56:10 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 23:56:11 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 23:56:11 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 23:56:11 Collecting pydantic-core==2.50.0 (from pydantic->blosc2>=2.3.0->tables) 23:56:11 Using cached pydantic_core-2.50.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.5 kB) 23:56:11 Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables) 23:56:11 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 23:56:12 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 23:56:12 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 23:56:12 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 23:56:12 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 23:56:12 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 23:56:12 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 23:56:12 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 23:56:12 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB) 23:56:12 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 23:56:12 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 23:56:12 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 23:56:12 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 23:56:12 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 23:56:12 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 23:56:13 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 23:56:13 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 23:56:13 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 23:56:13 Using cached idna-3.20-py3-none-any.whl (69 kB) 23:56:13 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 23:56:13 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 23:56:13 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (477 kB) 23:56:13 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 23:56:13 Using cached packaging-26.3-py3-none-any.whl (129 kB) 23:56:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 23:56:13 Using cached pydantic-2.14.0-py3-none-any.whl (487 kB) 23:56:13 Using cached pydantic_core-2.50.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.2 MB) 23:56:13 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 23:56:13 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 23:56:13 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 23:56:14 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 23:56:14 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 23:56:14 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 23:56:14 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB) 23:56:14 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 23:57:06 23:57:06 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.14.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.3 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.0 pydantic-core-2.50.0 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0 23:57:06 + pip install jinja2 23:57:07 Collecting jinja2 23:57:07 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 23:57:08 Collecting MarkupSafe>=2.0 (from jinja2) 23:57:08 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 23:57:08 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 23:57:08 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 23:57:08 Installing collected packages: MarkupSafe, jinja2 23:57:09 23:57:09 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6 23:57:09 + pip install omero-py 23:57:10 Collecting omero-py 23:57:10 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 23:57:10 Collecting appdirs (from omero-py) 23:57:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 23:57:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 23:57:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 23:57:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 23:57:10 Collecting PyYAML (from omero-py) 23:57:11 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 23:57:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 23:57:11 Collecting requests (from omero-py) 23:57:11 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 23:57:11 Collecting portalocker (from omero-py) 23:57:11 Using cached portalocker-4.4.0-py3-none-any.whl.metadata (10 kB) 23:57:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.2) 23:57:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20) 23:57:11 Collecting urllib3<3,>=1.26 (from requests->omero-py) 23:57:11 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) 23:57:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 23:57:11 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 23:57:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 23:57:11 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 23:57:11 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 23:57:11 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 23:57:12 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 23:57:12 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 23:57:30 23:57:30 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 urllib3-2.8.0 23:57:30 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 23:57:30 Collecting omero-metadata 23:57:30 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-v31lku29/omero-metadata_345e050a4be24e1399399ae1ee7a8a64 23:57:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-v31lku29/omero-metadata_345e050a4be24e1399399ae1ee7a8a64 23:57:32 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a815d619ce1fce619b9271951c6da19e2eb9068e 23:57:32 Installing build dependencies: started 23:57:33 Installing build dependencies: finished with status 'done' 23:57:33 Getting requirements to build wheel: started 23:57:33 Getting requirements to build wheel: finished with status 'done' 23:57:33 Preparing metadata (pyproject.toml): started 23:57:34 Preparing metadata (pyproject.toml): finished with status 'done' 23:57:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 23:57:34 Collecting pandas<3,>=2 (from omero-metadata) 23:57:34 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 23:57:34 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 23:57:34 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 23:57:34 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 23:57:34 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 23:57:34 Using cached pytz-2026.5-py2.py3-none-any.whl.metadata (22 kB) 23:57:35 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 23:57:35 Using cached tzdata-2026.5-py2.py3-none-any.whl.metadata (1.4 kB) 23:57:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 23:57:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 23:57:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 23:57:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 23:57:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 23:57:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 23:57:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.0) 23:57:35 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 23:57:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2) 23:57:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) 23:57:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) 23:57:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 23:57:35 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 23:57:35 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 23:57:35 Using cached pytz-2026.5-py2.py3-none-any.whl (506 kB) 23:57:35 Using cached tzdata-2026.5-py2.py3-none-any.whl (347 kB) 23:57:35 Building wheels for collected packages: omero-metadata 23:57:35 Building wheel for omero-metadata (pyproject.toml): started 23:57:35 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 23:57:35 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=af1eee9b33af54e356e848b323d4ac09a675b16b88efcefa900c72359a3b0629 23:57:35 Stored in directory: /tmp/pip-ephem-wheel-cache-xk1vy8nn/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 23:57:35 Successfully built omero-metadata 23:57:36 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 23:58:23 23:58:23 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.5 tzdata-2026.5 23:58:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 23:58:24 Collecting omero-cli-render 23:58:24 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-xypj71cp/omero-cli-render_9f8e895f1edc43b183463e334f7275bb 23:58:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-xypj71cp/omero-cli-render_9f8e895f1edc43b183463e334f7275bb 23:58:25 Running command git checkout -b merge_ci --track origin/merge_ci 23:58:25 Switched to a new branch 'merge_ci' 23:58:25 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:58:25 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 756fe970017ce472a85e171ec0a3a2729b0f5b28 23:58:25 Installing build dependencies: started 23:58:27 Installing build dependencies: finished with status 'done' 23:58:27 Getting requirements to build wheel: started 23:58:27 Getting requirements to build wheel: finished with status 'done' 23:58:27 Preparing metadata (pyproject.toml): started 23:58:27 Preparing metadata (pyproject.toml): finished with status 'done' 23:58:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 23:58:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 23:58:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 23:58:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 23:58:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 23:58:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 23:58:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 23:58:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 23:58:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.0) 23:58:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2) 23:58:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) 23:58:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) 23:58:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 23:58:27 Building wheels for collected packages: omero-cli-render 23:58:27 Building wheel for omero-cli-render (pyproject.toml): started 23:58:27 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 23:58:27 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=9e9f880c0f7e0df39d6a8595dea18e68d36d15e9fa93daa8678a80bbbcfd34f0 23:58:27 Stored in directory: /tmp/pip-ephem-wheel-cache-azmm8i99/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 23:58:27 Successfully built omero-cli-render 23:58:28 Installing collected packages: omero-cli-render 23:58:28 Successfully installed omero-cli-render-0.8.2.dev0 23:58:28 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 23:58:29 Collecting omero-cli-duplicate 23:58:29 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-2w5yh9nz/omero-cli-duplicate_e211f7cfa2ee4e908d701bde0b455135 23:58:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-2w5yh9nz/omero-cli-duplicate_e211f7cfa2ee4e908d701bde0b455135 23:58:30 Running command git checkout -b merge_ci --track origin/merge_ci 23:58:30 Switched to a new branch 'merge_ci' 23:58:30 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:58:30 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 2bbb7babc6eed2c6cc48697643eb79e2fc598634 23:58:30 Installing build dependencies: started 23:58:31 Installing build dependencies: finished with status 'done' 23:58:31 Getting requirements to build wheel: started 23:58:31 Getting requirements to build wheel: finished with status 'done' 23:58:31 Preparing metadata (pyproject.toml): started 23:58:32 Preparing metadata (pyproject.toml): finished with status 'done' 23:58:32 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 23:58:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 23:58:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 23:58:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 23:58:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 23:58:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 23:58:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 23:58:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 23:58:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.0) 23:58:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2) 23:58:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) 23:58:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) 23:58:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 23:58:32 Building wheels for collected packages: omero-cli-duplicate 23:58:32 Building wheel for omero-cli-duplicate (pyproject.toml): started 23:58:32 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 23:58:32 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=95a02f313c3984a1c4c0a02156caeecac1d67a66742ed37b7bb0b3924ba98d89 23:58:32 Stored in directory: /tmp/pip-ephem-wheel-cache-qnv530de/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 23:58:32 Successfully built omero-cli-duplicate 23:58:32 Installing collected packages: omero-cli-duplicate 23:58:32 Successfully installed omero-cli-duplicate-0.4.1.dev0 23:58:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 23:58:33 Collecting omero-cli-zarr 23:58:33 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-nyg8m5zd/omero-cli-zarr_1f230caa16414047bc59d7d96511d1ed 23:58:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-nyg8m5zd/omero-cli-zarr_1f230caa16414047bc59d7d96511d1ed 23:58:34 Running command git checkout -b merge_ci --track origin/merge_ci 23:58:34 Switched to a new branch 'merge_ci' 23:58:34 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:58:34 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 4ea7e77d9cc9998da983d6fbd1a63f286fa7140e 23:58:34 Installing build dependencies: started 23:58:36 Installing build dependencies: finished with status 'done' 23:58:36 Getting requirements to build wheel: started 23:58:36 Getting requirements to build wheel: finished with status 'done' 23:58:36 Installing backend dependencies: started 23:58:38 Installing backend dependencies: finished with status 'done' 23:58:38 Preparing metadata (pyproject.toml): started 23:58:38 Preparing metadata (pyproject.toml): finished with status 'done' 23:58:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 23:58:38 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 23:58:38 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 23:58:38 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 23:58:38 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:38 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 23:58:38 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:38 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 23:58:39 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:39 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) 23:58:39 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:39 Using cached aiohttp-3.14.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:58:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 23:58:39 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 23:58:40 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB) 23:58:40 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 23:58:40 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 23:58:40 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 23:58:40 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 23:58:40 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:40 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 23:58:40 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 23:58:41 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:41 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 23:58:41 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 23:58:41 Collecting importlib_metadata>=4.13.0 (from 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23:58:44 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) 23:58:44 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:44 Using cached wrapt-2.5.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.6 kB) 23:58:44 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:44 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) 23:58:44 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:44 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 23:58:44 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 23:58:44 Using cached 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pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 23:58:47 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB) 23:58:47 Using cached aiobotocore-3.9.2-py3-none-any.whl (102 kB) 23:58:47 Using cached aiohttp-3.14.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB) 23:58:47 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 23:58:47 Using cached botocore-1.43.106-py3-none-any.whl (16.0 MB) 23:58:48 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 23:58:48 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (320 kB) 23:58:48 Using cached wrapt-2.5.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (239 kB) 23:58:48 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB) 23:58:48 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 23:58:48 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 23:58:48 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 23:58:48 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 23:58:48 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB) 23:58:48 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 23:58:48 Using cached imageio-2.38.1-py3-none-any.whl (328 kB) 23:58:48 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB) 23:58:48 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 23:58:48 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 23:58:48 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 23:58:49 Using cached toolz-1.2.0-py3-none-any.whl (60 kB) 23:58:49 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 23:58:49 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 23:58:49 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB) 23:58:49 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 23:58:49 Using cached zipp-4.1.1-py3-none-any.whl (10 kB) 23:58:49 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 23:58:49 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 23:58:49 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 23:58:49 Building wheels for collected packages: omero-cli-zarr 23:58:49 Building wheel for omero-cli-zarr (pyproject.toml): started 23:58:50 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 23:58:50 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g4ea7e77-py3-none-any.whl size=39538 sha256=a8ebe340155fea23b448eec6b8fe76a5c044cb3a2bf46cdf5dc8f5c44f1dc37f 23:58:50 Stored in directory: /tmp/pip-ephem-wheel-cache-hks_ofsz/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 23:58:50 Successfully built omero-cli-zarr 23:58:50 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 23:59:25 Attempting uninstall: pydantic-core 23:59:25 Found existing installation: pydantic_core 2.50.0 23:59:25 Uninstalling pydantic_core-2.50.0: 23:59:25 Successfully uninstalled pydantic_core-2.50.0 23:59:58 Attempting uninstall: pydantic 23:59:58 Found existing installation: pydantic 2.14.0 23:59:58 Uninstalling pydantic-2.14.0: 23:59:58 Successfully uninstalled pydantic-2.14.0 00:00:45 00:00:46 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.2 aiohappyeyeballs-2.7.1 aiohttp-3.14.4 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.106 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-6.9.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g4ea7e77 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.0 yarl-1.25.1 zarr-3.1.6 zipp-4.1.1 00:00:46 + pip install omero-certificates 00:00:48 Collecting omero-certificates 00:00:48 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:00:48 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 00:00:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:00:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:00:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 00:00:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 00:00:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:00:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:00:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 00:00:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.0) 00:00:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2) 00:00:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) 00:00:48 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) 00:00:48 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 00:00:48 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:00:48 Installing collected packages: omero-certificates 00:00:48 Successfully installed omero-certificates-0.4.0 00:00:49 + for x in *.tar.gz 00:00:49 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:00:50 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:00:50 Installing build dependencies: started 00:00:51 Installing build dependencies: finished with status 'done' 00:00:51 Getting requirements to build wheel: started 00:00:52 Getting requirements to build wheel: finished with status 'done' 00:00:52 Preparing metadata (pyproject.toml): started 00:00:52 Preparing metadata (pyproject.toml): finished with status 'done' 00:00:52 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 00:00:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:00:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:00:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 00:00:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 00:00:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:00:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:00:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 00:00:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.0) 00:00:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2) 00:00:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) 00:00:52 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) 00:00:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 00:00:52 Building wheels for collected packages: omero-dropbox 00:00:52 Building wheel for omero-dropbox (pyproject.toml): started 00:00:52 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:00:52 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=17d271abef7abb74875db82279e948060936c5549a2417b363c89d8dee4b9874 00:00:52 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:00:52 Successfully built omero-dropbox 00:00:53 Installing collected packages: omero-dropbox 00:00:53 Successfully installed omero-dropbox-5.7.1.dev0 00:00:53 + for x in *.tar.gz 00:00:53 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:00:55 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:00:55 Installing build dependencies: started 00:00:56 Installing build dependencies: finished with status 'done' 00:00:56 Getting requirements to build wheel: started 00:00:57 Getting requirements to build wheel: finished with status 'done' 00:00:57 Preparing metadata (pyproject.toml): started 00:00:57 Preparing metadata (pyproject.toml): finished with status 'done' 00:00:57 Building wheels for collected packages: omero_marshal 00:00:57 Building wheel for omero_marshal (pyproject.toml): started 00:00:57 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:00:57 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=69fd23a86293985f416590c186532f5b507d93ebb9a04b7b8845d7105b6e0065 00:00:57 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:00:57 Successfully built omero_marshal 00:00:58 Installing collected packages: omero_marshal 00:01:00 Successfully installed omero_marshal-0.9.2.dev0 00:01:00 + for x in *.tar.gz 00:01:00 + pip install -U omero_py-5.23.1.dev0.tar.gz 00:01:01 Processing ./omero_py-5.23.1.dev0.tar.gz 00:01:01 Installing build dependencies: started 00:01:03 Installing build dependencies: finished with status 'done' 00:01:03 Getting requirements to build wheel: started 00:01:04 Getting requirements to build wheel: finished with status 'done' 00:01:04 Preparing metadata (pyproject.toml): started 00:01:04 Preparing metadata (pyproject.toml): finished with status 'done' 00:01:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 00:01:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 00:01:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 00:01:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 00:01:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 00:01:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 00:01:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 00:01:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.0) 00:01:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2) 00:01:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) 00:01:04 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) 00:01:04 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 00:01:04 Building wheels for collected packages: omero-py 00:01:04 Building wheel for omero-py (pyproject.toml): started 00:01:05 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:01:05 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787194 sha256=98720369d3b254f67212cdbe2415a16bdd7ff6c01e2062bb42607c7615fffcdd 00:01:05 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 00:01:05 Successfully built omero-py 00:01:05 Installing collected packages: omero-py 00:01:05 Attempting uninstall: omero-py 00:01:05 Found existing installation: omero-py 5.23.0 00:01:06 Uninstalling omero-py-5.23.0: 00:01:19 Successfully uninstalled omero-py-5.23.0 00:01:39 Successfully installed omero-py-5.23.1.dev0 00:01:39 + for x in *.tar.gz 00:01:39 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 00:01:40 Processing ./omero_scripts-5.10.1.dev0.tar.gz 00:01:41 Installing build dependencies: started 00:01:42 Installing build dependencies: finished with status 'done' 00:01:42 Getting requirements to build wheel: started 00:01:43 Getting requirements to build wheel: finished with status 'done' 00:01:43 Preparing metadata (pyproject.toml): started 00:01:43 Preparing metadata (pyproject.toml): finished with status 'done' 00:01:43 Building wheels for collected packages: omero-scripts 00:01:43 Building wheel for omero-scripts (pyproject.toml): started 00:01:43 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:01:43 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137348 sha256=1762deeb47f86b72aa2dec0c0989f34a3fd187faed660a8f2c91e6eb75d4a364 00:01:43 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 00:01:43 Successfully built omero-scripts 00:01:44 Installing collected packages: omero-scripts 00:01:45 Successfully installed omero-scripts-5.10.1.dev0 00:01:45 + for x in *.tar.gz 00:01:45 + pip install -U omero_web-5.33.3.dev0.tar.gz 00:01:46 Processing ./omero_web-5.33.3.dev0.tar.gz 00:01:46 Installing build dependencies: started 00:01:48 Installing build dependencies: finished with status 'done' 00:01:48 Getting requirements to build wheel: started 00:01:48 Getting requirements to build wheel: finished with status 'done' 00:01:48 Preparing metadata (pyproject.toml): started 00:01:48 Preparing metadata (pyproject.toml): finished with status 'done' 00:01:48 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) 00:01:48 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) 00:01:48 Using cached concurrent_log_handler-0.9.30-py3-none-any.whl.metadata (29 kB) 00:01:49 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) 00:01:49 Using cached django-5.2.18-py3-none-any.whl.metadata (4.1 kB) 00:01:49 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) 00:01:49 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:01:49 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) 00:01:49 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:01:49 Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) 00:01:49 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 00:01:49 Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) 00:01:49 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 00:01:49 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) 00:01:49 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (12.3.0) 00:01:49 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.5) 00:01:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.0) 00:01:49 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) 00:01:49 Collecting importlib-resources (from omero-web==5.33.3.dev0) 00:01:50 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 00:01:50 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:01:50 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 00:01:50 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:01:50 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 00:01:50 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (65.5.1) 00:01:50 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) 00:01:50 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 00:01:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) 00:01:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) 00:01:50 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) 00:01:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) 00:01:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) 00:01:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) 00:01:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.2) 00:01:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) 00:01:50 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) 00:01:50 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.7.22) 00:01:50 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:01:50 Using cached django-5.2.18-py3-none-any.whl (8.3 MB) 00:01:50 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 00:01:50 Using cached concurrent_log_handler-0.9.30-py3-none-any.whl (35 kB) 00:01:50 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:01:50 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 00:01:50 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 00:01:50 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 00:01:50 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 00:01:51 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 00:01:51 Building wheels for collected packages: omero-web 00:01:51 Building wheel for omero-web (pyproject.toml): started 00:01:52 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:01:52 Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2821710 sha256=3c3674dcaf848c3e09de4c876913f617edfbc1c610258f9121646cbf3b6e2f15 00:01:52 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 00:01:52 Successfully built omero-web 00:01:52 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:03:07 00:03:07 Successfully installed Django-5.2.18 asgiref-3.12.1 concurrent-log-handler-0.9.30 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 00:03:07 + omero config set omero.db.name OMERO-server 00:03:17 + omero config set omero.db.host pg 00:03:22 + omero config set omero.db.user postgres 00:03:27 + omero config set omero.data.dir /home/omero/omero-server-data 00:03:32 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:03:37 + omero config set omero.db.poolsize 25 00:03:42 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:03:47 + omero config set omero.security.trustStorePassword changeit 00:03:52 + omero config set omero.mail.config true 00:03:57 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:04:02 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 00:04:07 + omero certificates 00:04:12 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 00:04:12 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:04:12 + '[' false = true ']' 00:04:12 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:04:12 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:04:12 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG dbcommand => upgrade 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG dbhost => localhost 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG dbname => OMERO-server 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG dbpass => omero 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG dbuser => omero 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG rootpass => omero 00:04:13 2026-10-11 00:04:13,040 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:04:13 2026-10-11 00:04:13,043 [omego.extern] INFO Executing : omero version 00:04:17 OMERO.py version: 00:04:17 OMERO.server version: 00:04:17 5.6.3-689-6cbc390beb-ice36-b106 00:04:17 5.23.1.dev0 00:04:18 2026-10-11 00:04:18,322 [omego.extern] INFO Completed [5.279 s] 00:04:18 2026-10-11 00:04:18,322 [omego.extern] DEBUG Using omero CLI from omero 00:04:18 2026-10-11 00:04:18,322 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:04:18 2026-10-11 00:04:18,322 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:04:18 2026-10-11 00:04:18,322 [omego.extern] INFO Executing : omero config get --show-password 00:04:23 2026-10-11 00:04:23,318 [omego.extern] INFO Completed [4.996 s] 00:04:23 2026-10-11 00:04:23,319 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:04:23 2026-10-11 00:04:23,319 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:04:23 2026-10-11 00:04:23,512 [omego.extern] INFO Completed [0.193 s] 00:04:23 2026-10-11 00:04:23,512 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 00:04:23 2026-10-11 00:04:23,512 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 00:04:23 00:04:23 2026-10-11 00:04:23,512 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:04:23 2026-10-11 00:04:23,512 [omego.extern] INFO Executing : omero config get --show-password 00:04:28 2026-10-11 00:04:28,585 [omego.extern] INFO Completed [5.073 s] 00:04:28 2026-10-11 00:04:28,586 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:04:28 2026-10-11 00:04:28,586 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:04:28 2026-10-11 00:04:28,644 [omego.extern] INFO Completed [0.058 s] 00:04:28 2026-10-11 00:04:28,644 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n' 00:04:28 2026-10-11 00:04:28,644 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:04:28 2026-10-11 00:04:28,644 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:04:28 2026-10-11 00:04:28,644 [omego.extern] INFO Executing : omero config get --show-password 00:04:33 2026-10-11 00:04:33,770 [omego.extern] INFO Completed [5.126 s] 00:04:33 2026-10-11 00:04:33,770 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:04:33 2026-10-11 00:04:33,770 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:04:33 2026-10-11 00:04:33,894 [omego.extern] INFO Completed [0.124 s] 00:04:33 2026-10-11 00:04:33,894 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:04:33 2026-10-11 00:04:33,894 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:04:33 2026-10-11 00:04:33,936 [ omego.db] INFO Database is already at OMERO5.4__0 00:04:33 + export LANG=en_US.UTF-8 00:04:33 + LANG=en_US.UTF-8 00:04:33 + export LANGUAGE=en_US:en 00:04:33 + LANGUAGE=en_US:en 00:04:33 + export LC_ALL=en_US.UTF-8 00:04:33 + LC_ALL=en_US.UTF-8 00:04:33 + BUILD_ID=DONT_KILL_ME 00:04:33 + omero admin start 00:04:46 No descriptor given. Using etc/grid/default.xml 00:04:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:04:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:04:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:04:59 Waiting on startup. Use CTRL-C to exit 00:05:00 + omero admin waitup 00:05:06 Waiting on startup. Use CTRL-C to exit 00:05:07 + omero admin diagnostics 00:05:12 00:05:12 ================================================================================ 00:05:12 OMERO Diagnostics (admin) 00:05:12 ================================================================================ 00:05:12 00:05:12 Commands: java -version 21.0.12 (/usr/bin/java) 00:05:12 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:05:12 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:05:12 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:05:12 Commands: psql --version 16.14 (/usr/bin/psql) 00:05:12 Commands: openssl version 3.5.527 (/usr/bin/openssl) 00:05:12 00:05:12 Component: OMERO.py 5.23.1.dev0 00:05:12 Component: OMERO.server 5.6.3-689-6cbc390beb-ice36-b106 00:05:12 00:05:12 Server: icegridnode running 00:05:12 Server: Blitz-0 active (pid = 57282, enabled) 00:05:12 Server: Indexer-0 active (pid = 57306, enabled) 00:05:12 Server: OMERO.Glacier2 active (pid = 57301, enabled) 00:05:12 Server: OMERO.IceStorm active (pid = 57330, enabled) 00:05:12 Server: Processor-0 active (pid = 57313, enabled) 00:05:12 Server: Tables-0 active (pid = 57320, enabled) 00:05:12 00:05:12 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:05:12 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 00:05:12 Log files: DropBox.log n/a 00:05:12 Log files: FileServer.log n/a 00:05:12 Log files: Indexer-0.log 2.6 KB 00:05:12 Log files: MonitorServer.log n/a 00:05:12 Log files: Processor-0.log 856 B 00:05:12 Log files: Tables-0.log 1.1 KB 00:05:12 Log files: TestDropBox.log n/a 00:05:12 Log files: master.err empty 00:05:12 Log files: master.out 30.7 KB 00:05:12 Log files: Total size 0.07 MB 00:05:12 00:05:12 00:05:12 Environment:OMERO_HOME=(unset) 00:05:12 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:05:12 Environment:OMERO_NODE=(unset) 00:05:12 Environment:OMERO_MASTER=(unset) 00:05:12 Environment:OMERO_USERDIR=(unset) 00:05:12 Environment:OMERO_TMPDIR=(unset) 00:05:12 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:05:12 Environment:PYTHONPATH=(unset) 00:05:12 Environment:ICE_HOME=/opt/ice-3.6.5 00:05:12 Environment:LD_LIBRARY_PATH=(unset) 00:05:12 Environment:DYLD_LIBRARY_PATH=(unset) 00:05:12 00:05:12 OMERO SSL port:4064 00:05:12 OMERO TCP port:4063 00:05:12 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:05:12 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:05:12 00:05:12 JVM settings: Blitz-${index} -Xmx5007m 00:05:12 JVM settings: Indexer-${index} -Xmx3338m 00:05:12 JVM settings: PixelData-${index} -Xmx5007m 00:05:12 JVM settings: Repository-${index} -Xmx3338m 00:05:12 00:05:12 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:05:12 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:05:12 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:05:12 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 00:05:12 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 00:05:12 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 00:05:12 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 00:05:12 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 00:05:12 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 00:05:12 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 00:05:12 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 00:05:12 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT 42f868fccd0d70912fcacf6983302b7007263cf0 00:05:13 + deactivate 00:05:13 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:05:13 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:05:13 + export PATH 00:05:13 + unset _OLD_VIRTUAL_PATH 00:05:13 + '[' -n '' ']' 00:05:13 + hash -r 00:05:13 + '[' -n '' ']' 00:05:13 + unset VIRTUAL_ENV 00:05:13 + unset VIRTUAL_ENV_PROMPT 00:05:13 + '[' '!' '' = nondestructive ']' 00:05:13 + unset -f deactivate 00:05:13 Finished: SUCCESS