23:51:27 Started by upstream project "Trigger" build number 126 23:51:27 originally caused by: 23:51:27 Started by timer 23:51:27 Running as SYSTEM 23:51:27 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 23:51:27 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5559723628340085403.sh 23:51:27 + source /home/settings.env 23:51:27 ++ OMERO_DB_HOST=pg 23:51:27 ++ OMERO_DB_USER=postgres 23:51:27 ++ OMERO_DB_PASS= 23:51:27 ++ OMERO_ROOT_PASS=omero 23:51:27 ++ OMERO_DATA_DIR=/OMERO 23:51:27 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:51:27 + OMERO_DB_NAME=OMERO-server 23:51:27 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:51:27 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:51:27 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:51:27 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:51:27 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 23:51:27 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:51:27 ++ deactivate nondestructive 23:51:27 ++ '[' -n '' ']' 23:51:27 ++ '[' -n '' ']' 23:51:27 ++ hash -r 23:51:27 ++ '[' -n '' ']' 23:51:27 ++ unset VIRTUAL_ENV 23:51:27 ++ unset VIRTUAL_ENV_PROMPT 23:51:27 ++ '[' '!' nondestructive = nondestructive ']' 23:51:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:51:27 ++ export VIRTUAL_ENV 23:51:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:51:27 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:51:27 ++ export PATH 23:51:27 ++ '[' -n '' ']' 23:51:27 ++ '[' -z '' ']' 23:51:27 ++ _OLD_VIRTUAL_PS1= 23:51:27 ++ PS1='(.venv3) ' 23:51:27 ++ export PS1 23:51:27 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:51:27 ++ export VIRTUAL_ENV_PROMPT 23:51:27 ++ hash -r 23:51:27 + omero admin stop 23:52:03 Waiting on shutdown. Use CTRL-C to exit 23:52:03 .+ sleep 5 23:52:18 + deactivate 23:52:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 23:52:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:52:18 + export PATH 23:52:18 + unset _OLD_VIRTUAL_PATH 23:52:18 + '[' -n '' ']' 23:52:18 + hash -r 23:52:18 + '[' -n '' ']' 23:52:18 + unset VIRTUAL_ENV 23:52:18 + unset VIRTUAL_ENV_PROMPT 23:52:18 + '[' '!' '' = nondestructive ']' 23:52:18 + unset -f deactivate 23:52:18 + rm -rf /home/omero/workspace/OMERO-server/.venv3 23:55:11 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 23:55:32 + '[' false = true ']' 23:55:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 23:55:32 Skipping PURGE_DATA:CleanDbAndRepo 23:55:32 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 23:55:40 Copied 1 artifact from "OMERO-build" build number 107 23:55:41 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 97 23:55:41 Copied 2 artifacts from "OMERO-build-build" build number 108 23:55:42 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10518308125249096264.sh 23:55:42 + source /home/settings.env 23:55:42 ++ OMERO_DB_HOST=pg 23:55:42 ++ OMERO_DB_USER=postgres 23:55:42 ++ OMERO_DB_PASS= 23:55:42 ++ OMERO_ROOT_PASS=omero 23:55:42 ++ OMERO_DATA_DIR=/OMERO 23:55:42 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 23:55:42 + OMERO_DB_NAME=OMERO-server 23:55:42 + OMERO_DATA_DIR=/home/omero/omero-server-data 23:55:42 + mkdir -p /home/omero/omero-server-data 23:55:42 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 23:55:42 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:55:42 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 23:55:42 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:55:42 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 23:55:42 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:55:42 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 23:55:42 ++ ls OMERO.server-5.6.3-689-e8497566ea-ice36-b107.zip 23:55:42 + ZIP=OMERO.server-5.6.3-689-e8497566ea-ice36-b107.zip 23:55:42 + '[' '!' -z '' ']' 23:55:42 + DIST=OMERO.server-5.6.3-689-e8497566ea-ice36-b107 23:55:42 + unzip OMERO.server-5.6.3-689-e8497566ea-ice36-b107.zip 23:55:42 Archive: OMERO.server-5.6.3-689-e8497566ea-ice36-b107.zip 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/blitz/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/grid/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/profiles/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/error/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/grid/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/janelia/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/matplotlib/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/ncsa_paledit/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/seaborn/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/luts/wcif/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/analysis_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/annotation_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/export_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/figure_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/import_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/scripts/omero/util_scripts/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/server/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/share/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/share/licenses/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/misc/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__1/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__10/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__11/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__2/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__3/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__4/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__5/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__6/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__7/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__8/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3A__9/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3__4/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3__5/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3__6/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO3__7/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4.1__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4.2__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4.2__0/t/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4.3__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4.4__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO4__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.0__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.1__1/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.2__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.3__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4DEV__1/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4DEV__2/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4DEV__3/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/var/ 23:55:42 creating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/var/tmp/ 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/LICENSE.txt 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/backup.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/blitz/mail-senders.example 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/blitz/mail-server.example 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/build.properties 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/env.bat 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/env.sh 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/hibernate.properties 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/ice.config 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/logback-cli.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/logback-indexing-cli.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/logback-indexing.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/logback.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/mime.types 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/node1.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/node2.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/omero.properties 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/profiles/psql 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/rollover.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/Windows.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/error/maintainance.html 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/grid/README 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/grid/default.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/grid/templates.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/grid/windefault.xml 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/ice.config 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/internal.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/master.cfg 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/templates/robot.template 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/etc/testdropbox.config 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/history.rst 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/accessors-smart.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/activation.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aggdesigner-algorithm.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aircompressor.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/annotations.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/antlr.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aopalliance.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/apache-client.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/apiguardian-api.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/arns.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/asm.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/auth.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/avatica-core.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/avatica-metrics.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aws-core.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aws-query-protocol.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/aws-xml-protocol.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/base.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-anim.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-awt-util.jar 23:55:42 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-bridge.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-codec.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-constants.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-css.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-dom.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-ext.jar 23:55:43 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/lib/client/batik-gvt.jar 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inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/psql-footer.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/psql-header.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/schema.sql 23:56:01 inflating: OMERO.server-5.6.3-689-e8497566ea-ice36-b107/sql/psql/OMERO5.4__0/views.sql 23:56:02 + rm -f OMERO.server-5.6.3-689-e8497566ea-ice36-b107.zip 23:56:02 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-e8497566ea-ice36-b107 /home/omero/workspace/OMERO-server/OMERO.server 23:56:02 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 23:56:02 ++ deactivate nondestructive 23:56:02 ++ '[' -n '' ']' 23:56:02 ++ '[' -n '' ']' 23:56:02 ++ hash -r 23:56:02 ++ '[' -n '' ']' 23:56:02 ++ unset VIRTUAL_ENV 23:56:02 ++ unset VIRTUAL_ENV_PROMPT 23:56:02 ++ '[' '!' nondestructive = nondestructive ']' 23:56:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 23:56:02 ++ export VIRTUAL_ENV 23:56:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:56:02 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 23:56:02 ++ export PATH 23:56:02 ++ '[' -n '' ']' 23:56:02 ++ '[' -z '' ']' 23:56:02 ++ _OLD_VIRTUAL_PS1= 23:56:02 ++ PS1='(.venv3) ' 23:56:02 ++ export PS1 23:56:02 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 23:56:02 ++ export VIRTUAL_ENV_PROMPT 23:56:02 ++ hash -r 23:56:02 + pip install -U pip 23:56:03 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 23:56:03 Collecting pip 23:56:03 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) 23:56:03 Installing collected packages: pip 23:56:03 Attempting uninstall: pip 23:56:03 Found existing installation: pip 22.3.1 23:56:04 Uninstalling pip-22.3.1: 23:56:04 Successfully uninstalled pip-22.3.1 23:56:19 Successfully installed pip-26.2.1 23:56:19 WARNING: There was an error checking the latest version of pip. 23:56:19 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 23:56:20 Collecting zeroc-ice==3.6.5 23:56:20 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 23:56:23 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.6 MB/s 0:00:02 23:56:23 Installing collected packages: zeroc-ice 23:56:26 Successfully installed zeroc-ice-3.6.5 23:56:26 + pip install markdown 23:56:27 Collecting markdown 23:56:27 Using cached markdown-3.11-py3-none-any.whl.metadata (5.1 kB) 23:56:28 Using cached markdown-3.11-py3-none-any.whl (111 kB) 23:56:28 Installing collected packages: markdown 23:56:28 Successfully installed markdown-3.11 23:56:29 + pip install reportlab 23:56:29 Collecting reportlab 23:56:30 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB) 23:56:30 Collecting pillow>=9.0.0 (from reportlab) 23:56:30 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 23:56:30 Collecting charset-normalizer (from reportlab) 23:56:30 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) 23:56:30 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB) 23:56:30 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 23:56:31 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) 23:56:31 Installing collected packages: pillow, charset-normalizer, reportlab 23:56:39 23:56:39 Successfully installed charset-normalizer-3.5.2 pillow-12.3.0 reportlab-5.0.1 23:56:39 + pip install pyarrow 23:56:40 Collecting pyarrow 23:56:40 Using cached pyarrow-26.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 23:56:41 Using cached pyarrow-26.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (53.9 MB) 23:56:41 Installing collected packages: pyarrow 23:56:51 Successfully installed pyarrow-26.0.0 23:56:51 + pip install omego 23:56:52 Collecting omego 23:56:52 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 23:56:53 Collecting future (from omego) 23:56:53 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 23:56:53 Collecting yaclifw>=0.1.1 (from omego) 23:56:53 Using cached yaclifw-0.2.0-py3-none-any.whl 23:56:53 Collecting six (from yaclifw>=0.1.1->omego) 23:56:53 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 23:56:53 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 23:56:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 23:56:53 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 23:56:53 Installing collected packages: six, future, yaclifw, omego 23:56:59 23:56:59 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 23:56:59 + pip install tables 23:57:00 Collecting tables 23:57:00 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 23:57:01 Collecting numpy>=1.20.0 (from tables) 23:57:01 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 23:57:01 Collecting numexpr>=2.6.2 (from tables) 23:57:01 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 23:57:01 Collecting packaging (from tables) 23:57:01 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 23:57:01 Collecting py-cpuinfo (from tables) 23:57:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 23:57:02 Collecting blosc2>=2.3.0 (from tables) 23:57:02 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) 23:57:02 Collecting ndindex (from blosc2>=2.3.0->tables) 23:57:02 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 23:57:02 Collecting msgpack (from blosc2>=2.3.0->tables) 23:57:02 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:57:02 Collecting pydantic (from blosc2>=2.3.0->tables) 23:57:02 Downloading pydantic-2.14.1-py3-none-any.whl.metadata (133 kB) 23:57:02 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 23:57:03 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 23:57:03 Collecting rich (from blosc2>=2.3.0->tables) 23:57:03 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 23:57:03 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 23:57:03 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB) 23:57:03 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:03 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB) 23:57:03 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:03 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 23:57:03 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:03 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 23:57:03 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:03 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) 23:57:04 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 23:57:04 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 23:57:04 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:57:04 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 23:57:04 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 23:57:04 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 23:57:04 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 23:57:04 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 23:57:04 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 23:57:04 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 23:57:04 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 23:57:04 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 23:57:05 Collecting pydantic-core==2.50.1 (from pydantic->blosc2>=2.3.0->tables) 23:57:05 Downloading pydantic_core-2.50.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.5 kB) 23:57:05 Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables) 23:57:05 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB) 23:57:05 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 23:57:05 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 23:57:06 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 23:57:06 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) 23:57:06 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 23:57:06 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 23:57:06 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 23:57:06 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB) 23:57:06 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 23:57:06 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 23:57:06 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 23:57:06 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 23:57:06 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 23:57:06 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 23:57:06 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 23:57:06 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 23:57:06 Using cached anyio-4.15.1-py3-none-any.whl (132 kB) 23:57:06 Using cached idna-3.20-py3-none-any.whl (69 kB) 23:57:07 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 23:57:07 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 23:57:07 Using cached msgpack-1.2.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (477 kB) 23:57:07 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 23:57:07 Using cached packaging-26.3-py3-none-any.whl (129 kB) 23:57:07 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 23:57:07 Downloading pydantic-2.14.1-py3-none-any.whl (488 kB) 23:57:07 Downloading pydantic_core-2.50.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.2 MB) 23:57:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 11.2 MB/s 0:00:00 23:57:07 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 23:57:07 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB) 23:57:07 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 23:57:07 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) 23:57:08 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 23:57:08 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 23:57:08 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB) 23:57:08 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 23:57:58 23:57:58 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.14.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.3 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.1 pydantic-core-2.50.1 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0 23:57:58 + pip install jinja2 23:57:59 Collecting jinja2 23:57:59 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 23:57:59 Collecting MarkupSafe>=2.0 (from jinja2) 23:57:59 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 23:57:59 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 23:57:59 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 23:58:00 Installing collected packages: MarkupSafe, jinja2 23:58:01 23:58:01 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6 23:58:01 + pip install omero-py 23:58:02 Collecting omero-py 23:58:02 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 23:58:02 Collecting appdirs (from omero-py) 23:58:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 23:58:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 23:58:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 23:58:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 23:58:02 Collecting PyYAML (from omero-py) 23:58:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 23:58:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 23:58:02 Collecting requests (from omero-py) 23:58:02 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 23:58:02 Collecting portalocker (from omero-py) 23:58:02 Using cached portalocker-4.4.0-py3-none-any.whl.metadata (10 kB) 23:58:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.2) 23:58:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20) 23:58:03 Collecting urllib3<3,>=1.26 (from requests->omero-py) 23:58:03 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) 23:58:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 23:58:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 23:58:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 23:58:03 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB) 23:58:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 23:58:03 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 23:58:03 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) 23:58:03 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 23:58:21 23:58:21 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 urllib3-2.8.0 23:58:21 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 23:58:22 Collecting omero-metadata 23:58:22 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-f6e9lmhu/omero-metadata_e84de93e63e8450290e4d191a73299ae 23:58:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-f6e9lmhu/omero-metadata_e84de93e63e8450290e4d191a73299ae 23:58:23 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 4f6f32b2d18a55a064f6eccf05dae61bfb41eabf 23:58:23 Installing build dependencies: started 23:58:25 Installing build dependencies: finished with status 'done' 23:58:25 Getting requirements to build wheel: started 23:58:25 Getting requirements to build wheel: finished with status 'done' 23:58:25 Preparing metadata (pyproject.toml): started 23:58:25 Preparing metadata (pyproject.toml): finished with status 'done' 23:58:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 23:58:26 Collecting pandas<3,>=2 (from omero-metadata) 23:58:26 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 23:58:26 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) 23:58:26 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) 23:58:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 23:58:26 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) 23:58:26 Using cached pytz-2026.5-py2.py3-none-any.whl.metadata (22 kB) 23:58:26 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) 23:58:26 Using cached tzdata-2026.5-py2.py3-none-any.whl.metadata (1.4 kB) 23:58:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 23:58:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 23:58:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 23:58:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) 23:58:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 23:58:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 23:58:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.0) 23:58:26 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0) 23:58:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2) 23:58:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) 23:58:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) 23:58:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 23:58:26 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 23:58:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 23:58:27 Using cached pytz-2026.5-py2.py3-none-any.whl (506 kB) 23:58:27 Using cached tzdata-2026.5-py2.py3-none-any.whl (347 kB) 23:58:27 Building wheels for collected packages: omero-metadata 23:58:27 Building wheel for omero-metadata (pyproject.toml): started 23:58:27 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 23:58:27 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=ea2b4b08e1079f80c0e2ac81874cd2efed0a29d0cacb58c652b51a6f6be88df5 23:58:27 Stored in directory: /tmp/pip-ephem-wheel-cache-tc3qso17/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 23:58:27 Successfully built omero-metadata 23:58:27 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 23:59:18 23:59:18 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.5 tzdata-2026.5 23:59:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 23:59:19 Collecting omero-cli-render 23:59:19 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-a9hdvmmi/omero-cli-render_bdccdd6eb7314f1fb786c1d80dc36685 23:59:19 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-a9hdvmmi/omero-cli-render_bdccdd6eb7314f1fb786c1d80dc36685 23:59:20 Running command git checkout -b merge_ci --track origin/merge_ci 23:59:20 Switched to a new branch 'merge_ci' 23:59:20 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:59:20 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 10d55ab955f9cf4caa698b264579922f1e967e56 23:59:20 Installing build dependencies: started 23:59:21 Installing build dependencies: finished with status 'done' 23:59:21 Getting requirements to build wheel: started 23:59:22 Getting requirements to build wheel: finished with status 'done' 23:59:22 Preparing metadata (pyproject.toml): started 23:59:22 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 23:59:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 23:59:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 23:59:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 23:59:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 23:59:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 23:59:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 23:59:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 23:59:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.0) 23:59:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2) 23:59:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) 23:59:22 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) 23:59:22 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 23:59:22 Building wheels for collected packages: omero-cli-render 23:59:22 Building wheel for omero-cli-render (pyproject.toml): started 23:59:22 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 23:59:22 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=fb61d8b75eef4391d17b09fe00046487c470479b6a27bdb9fc174e781c7aff4f 23:59:22 Stored in directory: /tmp/pip-ephem-wheel-cache-dl2mvky7/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 23:59:22 Successfully built omero-cli-render 23:59:22 Installing collected packages: omero-cli-render 23:59:23 Successfully installed omero-cli-render-0.8.2.dev0 23:59:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 23:59:23 Collecting omero-cli-duplicate 23:59:23 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-veekcefp/omero-cli-duplicate_0eb3d74ac1ea4b28b02e493863d97a4c 23:59:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-veekcefp/omero-cli-duplicate_0eb3d74ac1ea4b28b02e493863d97a4c 23:59:25 Running command git checkout -b merge_ci --track origin/merge_ci 23:59:25 Switched to a new branch 'merge_ci' 23:59:25 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:59:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 88cf746c63fd7cf93875d77a016f46dc6ebd7923 23:59:25 Installing build dependencies: started 23:59:26 Installing build dependencies: finished with status 'done' 23:59:26 Getting requirements to build wheel: started 23:59:27 Getting requirements to build wheel: finished with status 'done' 23:59:27 Preparing metadata (pyproject.toml): started 23:59:27 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:27 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 23:59:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 23:59:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 23:59:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 23:59:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 23:59:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 23:59:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 23:59:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 23:59:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.0) 23:59:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2) 23:59:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) 23:59:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) 23:59:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 23:59:27 Building wheels for collected packages: omero-cli-duplicate 23:59:27 Building wheel for omero-cli-duplicate (pyproject.toml): started 23:59:27 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 23:59:27 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=4e7a43d5ee1d40a7ca3b1c276d855ed33f640a429593fc87cc94d0ca6428c189 23:59:27 Stored in directory: /tmp/pip-ephem-wheel-cache-6zb2op7p/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 23:59:27 Successfully built omero-cli-duplicate 23:59:27 Installing collected packages: omero-cli-duplicate 23:59:28 Successfully installed omero-cli-duplicate-0.4.1.dev0 23:59:28 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 23:59:28 Collecting omero-cli-zarr 23:59:28 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-a1qa1c2i/omero-cli-zarr_962d28deed9c462d96135d5643c0971c 23:59:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-a1qa1c2i/omero-cli-zarr_962d28deed9c462d96135d5643c0971c 23:59:29 Running command git checkout -b merge_ci --track origin/merge_ci 23:59:30 Switched to a new branch 'merge_ci' 23:59:30 branch 'merge_ci' set up to track 'origin/merge_ci'. 23:59:30 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 315cda572a8f34f240e70044b2e31743e44a1655 23:59:30 Installing build dependencies: started 23:59:31 Installing build dependencies: finished with status 'done' 23:59:31 Getting requirements to build wheel: started 23:59:31 Getting requirements to build wheel: finished with status 'done' 23:59:31 Installing backend dependencies: started 23:59:33 Installing backend dependencies: finished with status 'done' 23:59:33 Preparing metadata (pyproject.toml): started 23:59:33 Preparing metadata (pyproject.toml): finished with status 'done' 23:59:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 23:59:33 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 23:59:33 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 23:59:33 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 23:59:34 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:34 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) 23:59:34 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:34 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 23:59:34 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 23:59:34 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) 23:59:35 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:35 Downloading aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 23:59:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 23:59:35 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:35 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 23:59:35 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:35 Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB) 23:59:35 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:35 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 23:59:36 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:36 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 23:59:36 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 23:59:36 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 23:59:36 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:59:36 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB) 23:59:36 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:59:36 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 23:59:36 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 23:59:36 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 23:59:36 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 23:59:36 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from 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pydantic-2.12.5-py3-none-any.whl (463 kB) 23:59:43 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 23:59:43 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 23:59:43 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 23:59:43 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB) 23:59:43 Using cached aiobotocore-3.9.2-py3-none-any.whl (102 kB) 23:59:43 Downloading aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB) 23:59:43 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 9.4 MB/s 0:00:00 23:59:43 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 23:59:44 Using cached botocore-1.43.106-py3-none-any.whl (16.0 MB) 23:59:44 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 23:59:44 Using cached multidict-6.9.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (320 kB) 23:59:44 Using cached 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scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 23:59:45 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 23:59:45 Using cached toolz-1.2.0-py3-none-any.whl (60 kB) 23:59:45 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 23:59:45 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 23:59:45 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB) 23:59:45 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 23:59:45 Using cached zipp-4.1.1-py3-none-any.whl (10 kB) 23:59:45 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 23:59:45 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 23:59:45 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 23:59:46 Building wheels for collected packages: omero-cli-zarr 23:59:46 Building wheel for omero-cli-zarr (pyproject.toml): started 23:59:46 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 23:59:46 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g315cda5-py3-none-any.whl size=39538 sha256=5263a6371762e5d341d49e7540fc8f2439c47db5cd025b5170bf249b5eb3595a 23:59:46 Stored in directory: /tmp/pip-ephem-wheel-cache-j1osu467/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 23:59:46 Successfully built omero-cli-zarr 23:59:46 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 00:00:23 Attempting uninstall: pydantic-core 00:00:23 Found existing installation: pydantic_core 2.50.1 00:00:24 Uninstalling pydantic_core-2.50.1: 00:00:24 Successfully uninstalled pydantic_core-2.50.1 00:01:02 Attempting uninstall: pydantic 00:01:02 Found existing installation: pydantic 2.14.1 00:01:02 Uninstalling pydantic-2.14.1: 00:01:02 Successfully uninstalled pydantic-2.14.1 00:01:48 00:01:48 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.2 aiohappyeyeballs-2.7.1 aiohttp-3.14.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.106 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-6.9.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g315cda5 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.0 yarl-1.25.1 zarr-3.1.6 zipp-4.1.1 00:01:49 + pip install omero-certificates 00:01:51 Collecting omero-certificates 00:01:51 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:01:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 00:01:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:01:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:01:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 00:01:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 00:01:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:01:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:01:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 00:01:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.0) 00:01:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2) 00:01:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) 00:01:51 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) 00:01:51 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 00:01:51 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:01:51 Installing collected packages: omero-certificates 00:01:51 Successfully installed omero-certificates-0.4.0 00:01:51 + for x in *.tar.gz 00:01:51 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:01:52 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:01:52 Installing build dependencies: started 00:01:54 Installing build dependencies: finished with status 'done' 00:01:54 Getting requirements to build wheel: started 00:01:55 Getting requirements to build wheel: finished with status 'done' 00:01:55 Preparing metadata (pyproject.toml): started 00:01:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:01:55 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 00:01:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:01:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:01:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 00:01:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 00:01:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:01:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:01:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 00:01:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.0) 00:01:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2) 00:01:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) 00:01:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) 00:01:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 00:01:55 Building wheels for collected packages: omero-dropbox 00:01:55 Building wheel for omero-dropbox (pyproject.toml): started 00:01:55 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:01:55 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=fc2ee4608f10ed6eef980763376489e2101d13ce8bbbfe00bfb451cb47b4e960 00:01:55 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:01:55 Successfully built omero-dropbox 00:01:56 Installing collected packages: omero-dropbox 00:01:56 Successfully installed omero-dropbox-5.7.1.dev0 00:01:57 + for x in *.tar.gz 00:01:57 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:01:58 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:01:58 Installing build dependencies: started 00:01:59 Installing build dependencies: finished with status 'done' 00:01:59 Getting requirements to build wheel: started 00:02:00 Getting requirements to build wheel: finished with status 'done' 00:02:00 Preparing metadata (pyproject.toml): started 00:02:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:00 Building wheels for collected packages: omero_marshal 00:02:00 Building wheel for omero_marshal (pyproject.toml): started 00:02:01 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:02:01 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=300d3aa4a90305bda76492d172b3949ce80ff78379ea32177318b928174a7092 00:02:01 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:02:01 Successfully built omero_marshal 00:02:01 Installing collected packages: omero_marshal 00:02:04 Successfully installed omero_marshal-0.9.2.dev0 00:02:04 + for x in *.tar.gz 00:02:04 + pip install -U omero_py-5.23.1.dev0.tar.gz 00:02:05 Processing ./omero_py-5.23.1.dev0.tar.gz 00:02:05 Installing build dependencies: started 00:02:07 Installing build dependencies: finished with status 'done' 00:02:07 Getting requirements to build wheel: started 00:02:07 Getting requirements to build wheel: finished with status 'done' 00:02:07 Preparing metadata (pyproject.toml): started 00:02:07 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 00:02:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 00:02:07 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 00:02:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 00:02:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 00:02:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 00:02:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 00:02:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.0) 00:02:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2) 00:02:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) 00:02:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) 00:02:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 00:02:08 Building wheels for collected packages: omero-py 00:02:08 Building wheel for omero-py (pyproject.toml): started 00:02:09 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:02:09 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787194 sha256=50e11c5412b10b6fc386a58516002a968b19df95c604d7e5fe2158146773eff4 00:02:09 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 00:02:09 Successfully built omero-py 00:02:09 Installing collected packages: omero-py 00:02:09 Attempting uninstall: omero-py 00:02:09 Found existing installation: omero-py 5.23.0 00:02:10 Uninstalling omero-py-5.23.0: 00:02:24 Successfully uninstalled omero-py-5.23.0 00:02:42 Successfully installed omero-py-5.23.1.dev0 00:02:42 + for x in *.tar.gz 00:02:42 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 00:02:43 Processing ./omero_scripts-5.10.1.dev0.tar.gz 00:02:43 Installing build dependencies: started 00:02:45 Installing build dependencies: finished with status 'done' 00:02:45 Getting requirements to build wheel: started 00:02:45 Getting requirements to build wheel: finished with status 'done' 00:02:45 Preparing metadata (pyproject.toml): started 00:02:45 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:45 Building wheels for collected packages: omero-scripts 00:02:45 Building wheel for omero-scripts (pyproject.toml): started 00:02:46 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:02:46 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137348 sha256=64c5026d2d4612d5dbcd4ef75fe2505df0e63afb009899736f02dcb6916afe46 00:02:46 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 00:02:46 Successfully built omero-scripts 00:02:46 Installing collected packages: omero-scripts 00:02:47 Successfully installed omero-scripts-5.10.1.dev0 00:02:47 + for x in *.tar.gz 00:02:47 + pip install -U omero_web-5.33.3.dev0.tar.gz 00:02:48 Processing ./omero_web-5.33.3.dev0.tar.gz 00:02:49 Installing build dependencies: started 00:02:50 Installing build dependencies: finished with status 'done' 00:02:50 Getting requirements to build wheel: started 00:02:51 Getting requirements to build wheel: finished with status 'done' 00:02:51 Preparing metadata (pyproject.toml): started 00:02:51 Preparing metadata (pyproject.toml): finished with status 'done' 00:02:51 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) 00:02:51 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) 00:02:51 Using cached concurrent_log_handler-0.9.30-py3-none-any.whl.metadata (29 kB) 00:02:52 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) 00:02:52 Using cached django-5.2.18-py3-none-any.whl.metadata (4.1 kB) 00:02:52 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) 00:02:52 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:02:52 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) 00:02:52 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:02:52 Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) 00:02:52 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 00:02:52 Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) 00:02:52 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) 00:02:52 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) 00:02:52 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (12.3.0) 00:02:52 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.5) 00:02:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.0) 00:02:52 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) 00:02:53 Collecting importlib-resources (from omero-web==5.33.3.dev0) 00:02:53 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 00:02:53 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:02:53 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 00:02:53 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) 00:02:53 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB) 00:02:53 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (65.5.1) 00:02:53 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) 00:02:53 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 00:02:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) 00:02:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) 00:02:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) 00:02:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) 00:02:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) 00:02:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) 00:02:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.2) 00:02:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) 00:02:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) 00:02:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.7.22) 00:02:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:02:53 Using cached django-5.2.18-py3-none-any.whl (8.3 MB) 00:02:53 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 00:02:53 Using cached concurrent_log_handler-0.9.30-py3-none-any.whl (35 kB) 00:02:53 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:02:54 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) 00:02:54 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB) 00:02:54 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 00:02:54 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 00:02:54 Using cached wheel-0.48.0-py3-none-any.whl (33 kB) 00:02:54 Building wheels for collected packages: omero-web 00:02:54 Building wheel for omero-web (pyproject.toml): started 00:02:55 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:02:55 Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2821710 sha256=b6fc7f4ca0494050860a0715cca9e5529ce56d351b8139f51c6a237aa09fdc23 00:02:55 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 00:02:55 Successfully built omero-web 00:02:55 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:04:03 00:04:03 Successfully installed Django-5.2.18 asgiref-3.12.1 concurrent-log-handler-0.9.30 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0 00:04:03 + omero config set omero.db.name OMERO-server 00:04:12 + omero config set omero.db.host pg 00:04:18 + omero config set omero.db.user postgres 00:04:24 + omero config set omero.data.dir /home/omero/omero-server-data 00:04:29 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:04:35 + omero config set omero.db.poolsize 25 00:04:41 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:04:46 + omero config set omero.security.trustStorePassword changeit 00:04:51 + omero config set omero.mail.config true 00:04:56 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:05:02 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 00:05:07 + omero certificates 00:05:12 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 00:05:12 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:05:13 + '[' false = true ']' 00:05:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:05:13 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:05:13 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG dbcommand => upgrade 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG dbhost => localhost 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG dbname => OMERO-server 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG dbpass => omero 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG dbuser => omero 00:05:13 2026-10-12 00:05:13,322 [ omego.db] DEBUG rootpass => omero 00:05:13 2026-10-12 00:05:13,323 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:05:13 2026-10-12 00:05:13,323 [omego.extern] INFO Executing : omero version 00:05:17 OMERO.py version: 00:05:18 OMERO.server version: 00:05:18 5.6.3-689-e8497566ea-ice36-b107 00:05:18 5.23.1.dev0 00:05:18 2026-10-12 00:05:18,552 [omego.extern] INFO Completed [5.229 s] 00:05:18 2026-10-12 00:05:18,553 [omego.extern] DEBUG Using omero CLI from omero 00:05:18 2026-10-12 00:05:18,553 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:05:18 2026-10-12 00:05:18,553 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:18 2026-10-12 00:05:18,553 [omego.extern] INFO Executing : omero config get --show-password 00:05:23 2026-10-12 00:05:23,935 [omego.extern] INFO Completed [5.382 s] 00:05:23 2026-10-12 00:05:23,935 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:23 2026-10-12 00:05:23,935 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:05:24 2026-10-12 00:05:24,129 [omego.extern] INFO Completed [0.194 s] 00:05:24 2026-10-12 00:05:24,129 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 00:05:24 2026-10-12 00:05:24,129 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 00:05:24 00:05:24 2026-10-12 00:05:24,129 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:24 2026-10-12 00:05:24,129 [omego.extern] INFO Executing : omero config get --show-password 00:05:29 2026-10-12 00:05:29,694 [omego.extern] INFO Completed [5.565 s] 00:05:29 2026-10-12 00:05:29,694 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:29 2026-10-12 00:05:29,694 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:05:29 2026-10-12 00:05:29,733 [omego.extern] INFO Completed [0.039 s] 00:05:29 2026-10-12 00:05:29,733 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n' 00:05:29 2026-10-12 00:05:29,733 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:05:29 2026-10-12 00:05:29,733 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:05:29 2026-10-12 00:05:29,733 [omego.extern] INFO Executing : omero config get --show-password 00:05:35 2026-10-12 00:05:35,155 [omego.extern] INFO Completed [5.422 s] 00:05:35 2026-10-12 00:05:35,155 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:05:35 2026-10-12 00:05:35,155 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:05:35 2026-10-12 00:05:35,293 [omego.extern] INFO Completed [0.138 s] 00:05:35 2026-10-12 00:05:35,294 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:05:35 2026-10-12 00:05:35,294 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:05:35 2026-10-12 00:05:35,343 [ omego.db] INFO Database is already at OMERO5.4__0 00:05:35 + export LANG=en_US.UTF-8 00:05:35 + LANG=en_US.UTF-8 00:05:35 + export LANGUAGE=en_US:en 00:05:35 + LANGUAGE=en_US:en 00:05:35 + export LC_ALL=en_US.UTF-8 00:05:35 + LC_ALL=en_US.UTF-8 00:05:35 + BUILD_ID=DONT_KILL_ME 00:05:35 + omero admin start 00:05:48 No descriptor given. Using etc/grid/default.xml 00:06:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:06:01 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:06:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:06:01 Waiting on startup. Use CTRL-C to exit 00:06:02 + omero admin waitup 00:06:08 Waiting on startup. Use CTRL-C to exit 00:06:09 + omero admin diagnostics 00:06:14 00:06:14 ================================================================================ 00:06:14 OMERO Diagnostics (admin) 00:06:14 ================================================================================ 00:06:14 00:06:14 Commands: java -version 21.0.12 (/usr/bin/java) 00:06:14 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:06:14 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:06:14 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:06:14 Commands: psql --version 16.14 (/usr/bin/psql) 00:06:14 Commands: openssl version 3.5.527 (/usr/bin/openssl) 00:06:14 00:06:14 Component: OMERO.py 5.23.1.dev0 00:06:14 Component: OMERO.server 5.6.3-689-e8497566ea-ice36-b107 00:06:14 00:06:14 Server: icegridnode running 00:06:14 Server: Blitz-0 active (pid = 62151, enabled) 00:06:14 Server: Indexer-0 active (pid = 62176, enabled) 00:06:14 Server: OMERO.Glacier2 active (pid = 62177, enabled) 00:06:14 Server: OMERO.IceStorm active (pid = 62200, enabled) 00:06:14 Server: Processor-0 active (pid = 62170, enabled) 00:06:14 Server: Tables-0 active (pid = 62185, enabled) 00:06:14 00:06:14 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:06:14 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1 00:06:14 Log files: DropBox.log n/a 00:06:14 Log files: FileServer.log n/a 00:06:14 Log files: Indexer-0.log 2.6 KB 00:06:14 Log files: MonitorServer.log n/a 00:06:14 Log files: Processor-0.log 856 B 00:06:14 Log files: Tables-0.log 1.1 KB 00:06:14 Log files: TestDropBox.log n/a 00:06:14 Log files: master.err empty 00:06:14 Log files: master.out 30.7 KB 00:06:14 Log files: Total size 0.07 MB 00:06:14 00:06:14 00:06:14 Environment:OMERO_HOME=(unset) 00:06:14 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:06:14 Environment:OMERO_NODE=(unset) 00:06:14 Environment:OMERO_MASTER=(unset) 00:06:14 Environment:OMERO_USERDIR=(unset) 00:06:14 Environment:OMERO_TMPDIR=(unset) 00:06:14 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:06:14 Environment:PYTHONPATH=(unset) 00:06:14 Environment:ICE_HOME=/opt/ice-3.6.5 00:06:14 Environment:LD_LIBRARY_PATH=(unset) 00:06:14 Environment:DYLD_LIBRARY_PATH=(unset) 00:06:14 00:06:14 OMERO SSL port:4064 00:06:14 OMERO TCP port:4063 00:06:14 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:06:14 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:06:14 00:06:14 JVM settings: Blitz-${index} -Xmx5007m 00:06:14 JVM settings: Indexer-${index} -Xmx3338m 00:06:14 JVM settings: PixelData-${index} -Xmx5007m 00:06:14 JVM settings: Repository-${index} -Xmx3338m 00:06:14 00:06:14 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:14 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:14 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 00:06:14 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 00:06:14 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 00:06:14 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 00:06:14 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 00:06:14 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 00:06:14 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 00:06:14 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 00:06:14 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 00:06:14 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT 1e50ef1bf50aa9518bf6785a122dddbd380fae61 00:06:15 + deactivate 00:06:15 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:06:15 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:06:15 + export PATH 00:06:15 + unset _OLD_VIRTUAL_PATH 00:06:15 + '[' -n '' ']' 00:06:15 + hash -r 00:06:15 + '[' -n '' ']' 00:06:15 + unset VIRTUAL_ENV 00:06:15 + unset VIRTUAL_ENV_PROMPT 00:06:15 + '[' '!' '' = nondestructive ']' 00:06:15 + unset -f deactivate 00:06:15 Finished: SUCCESS