00:47:39 Started by upstream project "Trigger" build number 112 00:47:39 originally caused by: 00:47:39 Started by timer 00:47:39 Running as SYSTEM 00:47:40 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:47:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11949204142671010136.sh 00:47:40 + source /home/settings.env 00:47:40 ++ OMERO_DB_HOST=pg 00:47:40 ++ OMERO_DB_USER=postgres 00:47:40 ++ OMERO_DB_PASS= 00:47:40 ++ OMERO_ROOT_PASS=omero 00:47:40 ++ OMERO_DATA_DIR=/OMERO 00:47:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:40 + OMERO_DB_NAME=OMERO-server 00:47:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:40 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:40 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:47:40 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:40 ++ deactivate nondestructive 00:47:40 ++ '[' -n '' ']' 00:47:40 ++ '[' -n '' ']' 00:47:40 ++ '[' -n /bin/bash -o -n '' ']' 00:47:40 ++ hash -r 00:47:40 ++ '[' -n '' ']' 00:47:40 ++ unset VIRTUAL_ENV 00:47:40 ++ '[' '!' nondestructive = nondestructive ']' 00:47:40 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:40 ++ export VIRTUAL_ENV 00:47:40 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:40 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:40 ++ export PATH 00:47:40 ++ '[' -n '' ']' 00:47:40 ++ '[' -z '' ']' 00:47:40 ++ _OLD_VIRTUAL_PS1= 00:47:40 ++ PS1='(.venv3) ' 00:47:40 ++ export PS1 00:47:40 ++ '[' -n /bin/bash -o -n '' ']' 00:47:40 ++ hash -r 00:47:40 + omero admin stop 00:47:48 Waiting on shutdown. Use CTRL-C to exit 00:47:48 .+ sleep 5 00:48:04 + deactivate 00:48:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:48:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:04 + export PATH 00:48:04 + unset _OLD_VIRTUAL_PATH 00:48:04 + '[' -n '' ']' 00:48:04 + '[' -n /bin/bash -o -n '' ']' 00:48:04 + hash -r 00:48:04 + '[' -n '' ']' 00:48:04 + unset VIRTUAL_ENV 00:48:04 + '[' '!' '' = nondestructive ']' 00:48:04 + unset -f deactivate 00:48:04 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:48:06 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:48:10 + '[' false = true ']' 00:48:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:48:10 Skipping PURGE_DATA:CleanDbAndRepo 00:48:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.4.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:48:12 Copied 1 artifact from "OMERO-build" build number 100 00:48:12 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 99 00:48:12 Copied 2 artifacts from "OMERO-build-build" build number 100 00:48:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6719584273658339072.sh 00:48:12 + source /home/settings.env 00:48:12 ++ OMERO_DB_HOST=pg 00:48:12 ++ OMERO_DB_USER=postgres 00:48:12 ++ OMERO_DB_PASS= 00:48:12 ++ OMERO_ROOT_PASS=omero 00:48:12 ++ OMERO_DATA_DIR=/OMERO 00:48:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:48:12 + OMERO_DB_NAME=OMERO-server 00:48:12 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:48:12 + mkdir -p /home/omero/omero-server-data 00:48:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:48:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:12 ++ ls OMERO.server-5.6.3-474-0bec72967a-ice36.zip 00:48:12 + ZIP=OMERO.server-5.6.3-474-0bec72967a-ice36.zip 00:48:12 + '[' '!' -z '' ']' 00:48:12 + DIST=OMERO.server-5.6.3-474-0bec72967a-ice36 00:48:12 + unzip OMERO.server-5.6.3-474-0bec72967a-ice36.zip 00:48:12 Archive: OMERO.server-5.6.3-474-0bec72967a-ice36.zip 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/blitz/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/grid/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/profiles/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/error/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/grid/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/luts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/luts/janelia/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/luts/ncsa_paledit/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/luts/wcif/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/analysis_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/annotation_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/export_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/figure_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/import_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/scripts/omero/util_scripts/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/server/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/share/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/share/licenses/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/misc/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__1/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__10/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__11/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__2/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__3/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__4/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__5/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__6/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__7/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__8/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3A__9/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3__4/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3__5/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3__6/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO3__7/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4.1__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4.2__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4.2__0/t/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4.3__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4.4__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO4__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.0__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.1__1/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.2__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__1/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__2/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__3/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/ 00:48:12 creating: OMERO.server-5.6.3-474-0bec72967a-ice36/var/ 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/LICENSE.txt 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/backup.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/blitz/mail-senders.example 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/blitz/mail-server.example 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/build.properties 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/env.bat 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/env.sh 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/hibernate.properties 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/ice.config 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/logback-cli.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/logback-indexing-cli.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/logback-indexing.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/logback.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/mime.types 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/node1.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/node2.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/omero.properties 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/profiles/psql 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/rollover.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/Windows.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/error/maintainance.html 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/grid/README 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/grid/default.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/grid/templates.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/grid/windefault.xml 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/ice.config 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/internal.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/master.cfg 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/templates/robot.template 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/etc/testdropbox.config 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/history.rst 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/OMEZarrReader.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/activation.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aggdesigner-algorithm.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aircompressor.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/annotations.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/antlr.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aopalliance.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/avatica-core.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/avatica-metrics.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aws-java-sdk-core.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aws-java-sdk-kms.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/aws-java-sdk-s3.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/base.jar 00:48:12 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-all.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-anim.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-awt-util.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-bridge.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-codec.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-constants.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-css.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-dom.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-ext.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-extension.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-gui-util.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-gvt.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-i18n.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-parser.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-rasterizer-ext.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-rasterizer.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-script.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-slideshow.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-squiggle-ext.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-squiggle.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-svg-dom.jar 00:48:13 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/lib/client/batik-svgbrowser.jar 00:48:13 inflating: 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OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/schema.sql 00:48:15 inflating: OMERO.server-5.6.3-474-0bec72967a-ice36/sql/psql/OMERO5.4__0/views.sql 00:48:15 + rm -f OMERO.server-5.6.3-474-0bec72967a-ice36.zip 00:48:15 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-474-0bec72967a-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:48:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:48:15 ++ deactivate nondestructive 00:48:15 ++ '[' -n '' ']' 00:48:15 ++ '[' -n '' ']' 00:48:15 ++ '[' -n /bin/bash -o -n '' ']' 00:48:15 ++ hash -r 00:48:15 ++ '[' -n '' ']' 00:48:15 ++ unset VIRTUAL_ENV 00:48:15 ++ '[' '!' nondestructive = nondestructive ']' 00:48:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:48:15 ++ export VIRTUAL_ENV 00:48:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:15 ++ export PATH 00:48:15 ++ '[' -n '' ']' 00:48:15 ++ '[' -z '' ']' 00:48:15 ++ _OLD_VIRTUAL_PS1= 00:48:15 ++ PS1='(.venv3) ' 00:48:15 ++ export PS1 00:48:15 ++ '[' -n /bin/bash -o -n '' ']' 00:48:15 ++ hash -r 00:48:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:48:16 Collecting zeroc-ice==3.6.5 00:48:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:48:19 Installing collected packages: zeroc-ice 00:48:20 Successfully installed zeroc-ice-3.6.5 00:48:20 + pip install -U pip future 00:48:21 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:48:21 Collecting pip 00:48:21 Using cached pip-24.1-py3-none-any.whl (1.8 MB) 00:48:21 Collecting future 00:48:21 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:48:21 Installing collected packages: pip, future 00:48:21 Attempting uninstall: pip 00:48:21 Found existing installation: pip 21.2.3 00:48:22 Uninstalling pip-21.2.3: 00:48:22 Successfully uninstalled pip-21.2.3 00:48:23 Successfully installed future-1.0.0 pip-24.1 00:48:23 + pip install markdown 00:48:24 Collecting markdown 00:48:24 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:48:24 Collecting importlib-metadata>=4.4 (from markdown) 00:48:24 Using cached importlib_metadata-7.2.0-py3-none-any.whl.metadata (4.7 kB) 00:48:24 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:48:24 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 00:48:24 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:48:24 Using cached importlib_metadata-7.2.0-py3-none-any.whl (24 kB) 00:48:24 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 00:48:24 Installing collected packages: zipp, importlib-metadata, markdown 00:48:25 Successfully installed importlib-metadata-7.2.0 markdown-3.6 zipp-3.19.2 00:48:25 + pip install reportlab 00:48:25 Collecting reportlab 00:48:25 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB) 00:48:26 Collecting pillow>=9.0.0 (from reportlab) 00:48:26 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 00:48:26 Collecting chardet (from reportlab) 00:48:26 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:48:26 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB) 00:48:26 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:48:26 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:48:26 Installing collected packages: pillow, chardet, reportlab 00:48:28 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0 00:48:28 + pip install omego 00:48:29 Collecting omego 00:48:29 Using cached omego-0.7.0-py3-none-any.whl 00:48:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:48:29 Collecting yaclifw>=0.1.1 (from omego) 00:48:29 Using cached yaclifw-0.2.0-py3-none-any.whl 00:48:29 Collecting six (from yaclifw>=0.1.1->omego) 00:48:29 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:48:29 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:48:29 Installing collected packages: six, yaclifw, omego 00:48:29 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:48:30 + pip install tables 00:48:30 Collecting tables 00:48:30 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:48:30 Collecting numpy>=1.19.0 (from tables) 00:48:30 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:48:31 Collecting numexpr>=2.6.2 (from tables) 00:48:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 00:48:31 Collecting packaging (from tables) 00:48:31 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:48:31 Collecting py-cpuinfo (from tables) 00:48:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:48:31 Collecting blosc2>=2.3.0 (from tables) 00:48:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:48:31 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:48:31 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:48:31 Collecting msgpack (from blosc2>=2.3.0->tables) 00:48:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:48:31 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:48:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:48:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 00:48:31 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB) 00:48:32 Using cached packaging-24.1-py3-none-any.whl (53 kB) 00:48:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:48:32 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:48:32 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:48:32 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:48:38 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.0 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 00:48:38 + pip install jinja2 00:48:39 Collecting jinja2 00:48:39 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:48:39 Collecting MarkupSafe>=2.0 (from jinja2) 00:48:39 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:48:39 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:48:39 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:48:39 Installing collected packages: MarkupSafe, jinja2 00:48:39 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 00:48:40 + pip install omero-py 00:48:40 Collecting omero-py 00:48:40 Using cached omero_py-5.19.3-py3-none-any.whl.metadata (6.3 kB) 00:48:41 Collecting urllib3<2 (from omero-py) 00:48:41 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 00:48:41 Collecting appdirs (from omero-py) 00:48:41 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:48:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:48:41 Collecting numpy<2 (from omero-py) 00:48:41 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:48:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0) 00:48:41 Collecting PyYAML (from omero-py) 00:48:41 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:48:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:48:41 Collecting requests (from omero-py) 00:48:41 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:48:41 Collecting portalocker (from omero-py) 00:48:42 Downloading portalocker-2.10.0-py3-none-any.whl.metadata (8.5 kB) 00:48:42 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:48:42 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:48:42 Collecting idna<4,>=2.5 (from requests->omero-py) 00:48:42 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:48:42 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:48:42 Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB) 00:48:42 Using cached omero_py-5.19.3-py3-none-any.whl (2.8 MB) 00:48:42 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:48:42 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 00:48:42 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:48:42 Downloading portalocker-2.10.0-py3-none-any.whl (18 kB) 00:48:42 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:48:42 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:48:42 Using cached certifi-2024.6.2-py3-none-any.whl (164 kB) 00:48:42 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:48:42 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:48:43 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:48:43 Attempting uninstall: numpy 00:48:43 Found existing installation: numpy 2.0.0 00:48:43 Uninstalling numpy-2.0.0: 00:48:43 Successfully uninstalled numpy-2.0.0 00:48:49 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.6.2 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.3 portalocker-2.10.0 requests-2.32.3 urllib3-1.26.19 00:48:49 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:48:49 Collecting omero-metadata 00:48:49 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-mmyp_u2y/omero-metadata_a95ea277645a4e39b466dfaeca4ea9d6 00:48:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-mmyp_u2y/omero-metadata_a95ea277645a4e39b466dfaeca4ea9d6 00:48:50 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 93da8fe8763b45c282c10c2d8b404d0b2bc2b455 00:48:50 Installing build dependencies: started 00:48:52 Installing build dependencies: finished with status 'done' 00:48:52 Getting requirements to build wheel: started 00:48:53 Getting requirements to build wheel: finished with status 'done' 00:48:53 Preparing metadata (pyproject.toml): started 00:48:53 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.3) 00:48:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:48:53 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 00:48:53 Collecting pandas (from omero-metadata) 00:48:53 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:48:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 00:48:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:48:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:48:53 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:48:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0) 00:48:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:48:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:48:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.0) 00:48:53 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:48:53 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:48:53 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:48:53 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:48:53 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:48:53 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:48:53 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:48:53 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:48:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:48:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 00:48:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.6.2) 00:48:53 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:48:54 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:48:54 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:48:54 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:48:54 Building wheels for collected packages: omero-metadata 00:48:54 Building wheel for omero-metadata (pyproject.toml): started 00:48:54 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:48:54 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=bb0ef45d6c312b9fe800b79202757f4f513920e9e8898bb7a5151ffb8741f997 00:48:54 Stored in directory: /tmp/pip-ephem-wheel-cache-1gva1f6_/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:48:54 Successfully built omero-metadata 00:48:54 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:49:01 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:49:01 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:49:01 Collecting omero-cli-render 00:49:01 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-9_sq1nu1/omero-cli-render_da605a910d774578bfd656eb17cf3f63 00:49:01 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-9_sq1nu1/omero-cli-render_da605a910d774578bfd656eb17cf3f63 00:49:02 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:03 Switched to a new branch 'merge_ci' 00:49:03 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:03 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0f99631a69ff4218c964b6fe3a239ad66e549d44 00:49:03 Installing build dependencies: started 00:49:05 Installing build dependencies: finished with status 'done' 00:49:05 Getting requirements to build wheel: started 00:49:05 Getting requirements to build wheel: finished with status 'done' 00:49:05 Preparing metadata (pyproject.toml): started 00:49:06 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:49:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.3) 00:49:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 00:49:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:49:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:49:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:49:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0) 00:49:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:49:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:49:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.0) 00:49:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:49:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 00:49:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.6.2) 00:49:06 Building wheels for collected packages: omero-cli-render 00:49:06 Building wheel for omero-cli-render (pyproject.toml): started 00:49:06 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:49:06 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18029 sha256=c770ebf53cfdb5378258f1e04876c2ae917194b551e416ea4c6a19432723d545 00:49:06 Stored in directory: /tmp/pip-ephem-wheel-cache-q2vwj395/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:49:06 Successfully built omero-cli-render 00:49:06 Installing collected packages: omero-cli-render 00:49:06 Successfully installed omero-cli-render-0.8.1.dev0 00:49:06 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:49:07 Collecting omero-cli-duplicate 00:49:07 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-4c1rbw1f/omero-cli-duplicate_5a4477edc9f24f4a8f5d10ae7443f06d 00:49:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-4c1rbw1f/omero-cli-duplicate_5a4477edc9f24f4a8f5d10ae7443f06d 00:49:08 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:08 Switched to a new branch 'merge_ci' 00:49:08 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:08 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 00387eb16159846348187e073effe1e3b368b08c 00:49:08 Installing build dependencies: started 00:49:11 Installing build dependencies: finished with status 'done' 00:49:11 Getting requirements to build wheel: started 00:49:11 Getting requirements to build wheel: finished with status 'done' 00:49:11 Preparing metadata (pyproject.toml): started 00:49:12 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:12 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.3) 00:49:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 00:49:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:49:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:49:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:49:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0) 00:49:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:49:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:49:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:49:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.0) 00:49:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:49:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 00:49:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.6.2) 00:49:12 Building wheels for collected packages: omero-cli-duplicate 00:49:12 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:49:12 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:49:12 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=c476b9ba06470fc65077e761f334bf2cf2824b6b6f6620e14209f9c8b602004e 00:49:12 Stored in directory: /tmp/pip-ephem-wheel-cache-rypjnpnh/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:49:12 Successfully built omero-cli-duplicate 00:49:12 Installing collected packages: omero-cli-duplicate 00:49:12 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:49:12 + pip install omero-certificates 00:49:14 Collecting omero-certificates 00:49:14 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:49:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.3) 00:49:14 Collecting distro==1.8.0 (from omero-certificates) 00:49:14 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:49:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 00:49:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:49:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:49:14 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:49:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0) 00:49:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:49:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:49:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:49:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.0) 00:49:14 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:49:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 00:49:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.6.2) 00:49:14 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:49:14 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:49:14 Installing collected packages: distro, omero-certificates 00:49:14 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:49:15 + for x in *.tar.gz 00:49:15 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:49:15 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:49:15 Installing build dependencies: started 00:49:18 Installing build dependencies: finished with status 'done' 00:49:18 Getting requirements to build wheel: started 00:49:18 Getting requirements to build wheel: finished with status 'done' 00:49:18 Preparing metadata (pyproject.toml): started 00:49:18 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:18 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.3) 00:49:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 00:49:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:49:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:49:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:49:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.3.0) 00:49:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1) 00:49:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:49:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:49:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.0) 00:49:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 00:49:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 00:49:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.6.2) 00:49:18 Building wheels for collected packages: omero-dropbox 00:49:18 Building wheel for omero-dropbox (pyproject.toml): started 00:49:19 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:49:19 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=61bcb6007fd863e852109781e0cb42620b430b2afb852e18b6e84ac1be356480 00:49:19 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:49:19 Successfully built omero-dropbox 00:49:19 Installing collected packages: omero-dropbox 00:49:19 Successfully installed omero-dropbox-5.7.1.dev0 00:49:19 + for x in *.tar.gz 00:49:19 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:49:19 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:49:19 Installing build dependencies: started 00:49:22 Installing build dependencies: finished with status 'done' 00:49:22 Getting requirements to build wheel: started 00:49:22 Getting requirements to build wheel: finished with status 'done' 00:49:22 Preparing metadata (pyproject.toml): started 00:49:22 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:22 Building wheels for collected packages: omero_marshal 00:49:22 Building wheel for omero_marshal (pyproject.toml): started 00:49:23 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:49:23 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=0106105718aa87a98910bbcf089b1c08287faa3a956e46dcb6b2d30cc47f5ae9 00:49:23 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:49:23 Successfully built omero_marshal 00:49:23 Installing collected packages: omero_marshal 00:49:23 Successfully installed omero_marshal-0.9.1.dev0 00:49:23 + for x in *.tar.gz 00:49:23 + pip install -U omero_py-5.19.4.dev0.tar.gz 00:49:24 Processing ./omero_py-5.19.4.dev0.tar.gz 00:49:24 Installing build dependencies: started 00:49:27 Installing build dependencies: finished with status 'done' 00:49:27 Getting requirements to build wheel: started 00:49:27 Getting requirements to build wheel: finished with status 'done' 00:49:27 Preparing metadata (pyproject.toml): started 00:49:27 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:27 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.19) 00:49:27 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.4.4) 00:49:27 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.0.0) 00:49:27 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.4) 00:49:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (10.3.0) 00:49:27 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (6.0.1) 00:49:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (3.6.5) 00:49:27 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.32.3) 00:49:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.10.0) 00:49:27 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.3.2) 00:49:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.7) 00:49:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (2024.6.2) 00:49:27 Building wheels for collected packages: omero-py 00:49:27 Building wheel for omero-py (pyproject.toml): started 00:49:29 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:49:29 Created wheel for omero-py: filename=omero_py-5.19.4.dev0-py3-none-any.whl size=2782849 sha256=2dfc38d42e71d32dc9d366b2993f479fdaef68c4c942d174c2a56c4e15a74208 00:49:29 Stored in directory: /home/omero/.cache/pip/wheels/f4/9e/a5/caf57b3ab5be95b791b32331e833a135756ff787a5d5189ab9 00:49:29 Successfully built omero-py 00:49:29 Installing collected packages: omero-py 00:49:29 Attempting uninstall: omero-py 00:49:29 Found existing installation: omero-py 5.19.3 00:49:29 Uninstalling omero-py-5.19.3: 00:49:30 Successfully uninstalled omero-py-5.19.3 00:49:33 Successfully installed omero-py-5.19.4.dev0 00:49:33 + for x in *.tar.gz 00:49:33 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 00:49:33 Processing ./omero_scripts-5.8.3.dev0.tar.gz 00:49:33 Installing build dependencies: started 00:49:36 Installing build dependencies: finished with status 'done' 00:49:36 Getting requirements to build wheel: started 00:49:36 Getting requirements to build wheel: finished with status 'done' 00:49:36 Preparing metadata (pyproject.toml): started 00:49:36 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:36 Building wheels for collected packages: omero-scripts 00:49:36 Building wheel for omero-scripts (pyproject.toml): started 00:49:37 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:49:37 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116558 sha256=1d710d95303647403d56445db4596764d04b6d11257817b71344429e766d09dc 00:49:37 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 00:49:37 Successfully built omero-scripts 00:49:37 Installing collected packages: omero-scripts 00:49:37 Successfully installed omero-scripts-5.8.3.dev0 00:49:37 + for x in *.tar.gz 00:49:37 + pip install -U omero_web-5.26.1.dev0.tar.gz 00:49:38 Processing ./omero_web-5.26.1.dev0.tar.gz 00:49:38 Installing build dependencies: started 00:49:40 Installing build dependencies: finished with status 'done' 00:49:40 Getting requirements to build wheel: started 00:49:41 Getting requirements to build wheel: finished with status 'done' 00:49:41 Preparing metadata (pyproject.toml): started 00:49:41 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:41 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.4.dev0) 00:49:42 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0) 00:49:42 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:49:42 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0) 00:49:42 Using cached Django-4.2.13-py3-none-any.whl.metadata (4.1 kB) 00:49:42 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0) 00:49:42 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:49:42 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0) 00:49:42 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:49:42 Collecting django-csp (from omero-web==5.26.1.dev0) 00:49:42 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:49:43 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0) 00:49:43 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 00:49:43 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0) 00:49:43 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 00:49:43 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0) 00:49:43 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.3.0) 00:49:43 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1) 00:49:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.0) 00:49:43 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1) 00:49:43 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:43 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:49:43 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:43 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB) 00:49:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19) 00:49:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4) 00:49:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0) 00:49:43 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4) 00:49:43 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1) 00:49:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5) 00:49:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3) 00:49:43 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 00:49:43 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:49:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2) 00:49:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7) 00:49:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.6.2) 00:49:43 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:49:43 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:49:43 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:49:43 Using cached Django-4.2.13-py3-none-any.whl (8.0 MB) 00:49:44 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 00:49:44 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 00:49:44 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:49:44 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:49:44 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB) 00:49:44 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:49:44 Building wheels for collected packages: omero-web 00:49:44 Building wheel for omero-web (pyproject.toml): started 00:49:45 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:49:45 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2764662 sha256=9c5679ef8b9e0c26fc7bf454f99cf98bc67794758cb0ca88647f4ad6675728d4 00:49:45 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453 00:49:45 Successfully built omero-web 00:49:46 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:49:50 Successfully installed Django-4.2.13 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.0 typing-extensions-4.12.2 whitenoise-6.7.0 00:49:50 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:49:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:49:50 --2024-06-23 00:49:50-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:51 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ... 00:49:51 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 00:49:51 HTTP request sent, awaiting response... 200 OK 00:49:51 Length: 94763 (93K) [text/plain] 00:49:51 Saving to: ‘Figure_To_Pdf.py’ 00:49:51 00:49:51 0K .......... .......... .......... .......... .......... 54% 3.32M 0s 00:49:51 50K .......... .......... .......... .......... .. 100% 5.19M=0.02s 00:49:51 00:49:51 2024-06-23 00:49:51 (3.97 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763] 00:49:51 00:49:51 + chmod 755 Figure_To_Pdf.py 00:49:51 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:49:51 + omero config set omero.db.name OMERO-server 00:49:54 + omero config set omero.db.host pg 00:49:56 + omero config set omero.db.user postgres 00:49:59 + omero config set omero.data.dir /home/omero/omero-server-data 00:50:01 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:50:04 + omero config set omero.db.poolsize 25 00:50:08 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:50:11 + omero config set omero.security.trustStorePassword changeit 00:50:13 + omero config set omero.mail.config true 00:50:15 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:50:18 + omero config set omero.mail.host smtp.dundee.ac.uk 00:50:20 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:50:22 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:50:25 + omero certificates 00:50:26 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:50:27 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:50:27 + '[' false = true ']' 00:50:27 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:50:27 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:50:27 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:50:27 2024-06-23 00:50:27,740 [ omego.db] DEBUG dbcommand => upgrade 00:50:27 2024-06-23 00:50:27,740 [ omego.db] DEBUG dbhost => localhost 00:50:27 2024-06-23 00:50:27,740 [ omego.db] DEBUG dbname => OMERO-server 00:50:27 2024-06-23 00:50:27,740 [ omego.db] DEBUG dbpass => omero 00:50:27 2024-06-23 00:50:27,740 [ omego.db] DEBUG dbuser => omero 00:50:27 2024-06-23 00:50:27,741 [ omego.db] DEBUG rootpass => omero 00:50:27 2024-06-23 00:50:27,741 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:50:27 2024-06-23 00:50:27,741 [omego.extern] INFO Executing : omero version 00:50:29 OMERO.py version: 00:50:29 OMERO.server version: 00:50:29 5.6.3-474-0bec72967a-ice36 00:50:29 5.19.4.dev0 00:50:30 2024-06-23 00:50:30,270 [omego.extern] INFO Completed [2.529 s] 00:50:30 2024-06-23 00:50:30,271 [omego.extern] DEBUG Using omero CLI from omero 00:50:30 2024-06-23 00:50:30,271 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:50:30 2024-06-23 00:50:30,271 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:30 2024-06-23 00:50:30,271 [omego.extern] INFO Executing : omero config get --show-password 00:50:32 2024-06-23 00:50:32,670 [omego.extern] INFO Completed [2.398 s] 00:50:32 2024-06-23 00:50:32,670 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:32 2024-06-23 00:50:32,670 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:50:32 2024-06-23 00:50:32,716 [omego.extern] INFO Completed [0.045 s] 00:50:32 2024-06-23 00:50:32,716 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:50:32 2024-06-23 00:50:32,717 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:50:32 00:50:32 2024-06-23 00:50:32,717 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:32 2024-06-23 00:50:32,717 [omego.extern] INFO Executing : omero config get --show-password 00:50:35 2024-06-23 00:50:35,222 [omego.extern] INFO Completed [2.505 s] 00:50:35 2024-06-23 00:50:35,222 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:35 2024-06-23 00:50:35,223 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:50:35 2024-06-23 00:50:35,384 [omego.extern] INFO Completed [0.161 s] 00:50:35 2024-06-23 00:50:35,384 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.5") at port "5432".\n' 00:50:35 2024-06-23 00:50:35,384 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:35 2024-06-23 00:50:35,384 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:35 2024-06-23 00:50:35,384 [omego.extern] INFO Executing : omero config get --show-password 00:50:38 2024-06-23 00:50:38,060 [omego.extern] INFO Completed [2.676 s] 00:50:38 2024-06-23 00:50:38,060 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:38 2024-06-23 00:50:38,061 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:38 2024-06-23 00:50:38,183 [omego.extern] INFO Completed [0.123 s] 00:50:38 2024-06-23 00:50:38,184 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:50:38 2024-06-23 00:50:38,184 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:50:38 2024-06-23 00:50:38,187 [ omego.db] INFO Database is already at OMERO5.4__0 00:50:38 + export LANG=en_US.UTF-8 00:50:38 + LANG=en_US.UTF-8 00:50:38 + export LANGUAGE=en_US:en 00:50:38 + LANGUAGE=en_US:en 00:50:38 + export LC_ALL=en_US.UTF-8 00:50:38 + LC_ALL=en_US.UTF-8 00:50:38 + BUILD_ID=DONT_KILL_ME 00:50:38 + omero admin start 00:50:52 No descriptor given. Using etc/grid/default.xml 00:51:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:51:09 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:51:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:51:09 Waiting on startup. Use CTRL-C to exit 00:51:09 + omero admin waitup 00:51:11 Waiting on startup. Use CTRL-C to exit 00:51:12 + omero admin diagnostics 00:51:15 00:51:15 ================================================================================ 00:51:15 OMERO Diagnostics (admin) 00:51:15 ================================================================================ 00:51:15 00:51:15 Commands: java -version 17.0.11 (/usr/bin/java) 00:51:15 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:51:15 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:51:15 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:51:15 Commands: psql --version 16.2 (/usr/bin/psql) 00:51:15 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:51:15 00:51:15 Component: OMERO.py 5.19.4.dev0 00:51:15 Component: OMERO.server 5.6.3-474-0bec72967a-ice36 00:51:15 00:51:15 Server: icegridnode running 00:51:15 Server: Blitz-0 active (pid = 113966, enabled) 00:51:15 Server: Indexer-0 active (pid = 113996, enabled) 00:51:15 Server: OMERO.Glacier2 active (pid = 113992, enabled) 00:51:15 Server: OMERO.IceStorm active (pid = 114024, enabled) 00:51:15 Server: Processor-0 activating (enabled) 00:51:15 Server: Tables-0 activating (enabled) 00:51:15 00:51:15 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:51:15 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 00:51:15 Log files: DropBox.log n/a 00:51:15 Log files: FileServer.log n/a 00:51:15 Log files: Indexer-0.log 2.6 KB 00:51:15 Log files: MonitorServer.log n/a 00:51:15 Log files: Processor-0.log 592 B 00:51:15 Log files: Tables-0.log 841 B 00:51:15 Log files: TestDropBox.log n/a 00:51:15 Log files: master.err empty 00:51:15 Log files: master.out 30.1 KB 00:51:15 Log files: Total size 0.06 MB 00:51:15 00:51:15 00:51:15 Environment:OMERO_HOME=(unset) 00:51:15 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:51:15 Environment:OMERO_NODE=(unset) 00:51:15 Environment:OMERO_MASTER=(unset) 00:51:15 Environment:OMERO_USERDIR=(unset) 00:51:15 Environment:OMERO_TMPDIR=(unset) 00:51:15 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:51:15 Environment:PYTHONPATH=(unset) 00:51:15 Environment:ICE_HOME=/opt/ice-3.6.5 00:51:15 Environment:LD_LIBRARY_PATH=(unset) 00:51:15 Environment:DYLD_LIBRARY_PATH=(unset) 00:51:15 00:51:15 OMERO SSL port:4064 00:51:15 OMERO TCP port:4063 00:51:15 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:51:15 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:51:15 00:51:15 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:51:15 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:51:15 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:51:15 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:51:15 00:51:15 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 23 June 2024 d038a89a47b332e28a7ba15c86b4d9b64dcb01c2 00:51:15 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 23 June 2024 d038a89a47b332e28a7ba15c86b4d9b64dcb01c2 00:51:15 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 23 June 2024 d038a89a47b332e28a7ba15c86b4d9b64dcb01c2 00:51:15 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 23 June 2024 7bd52b1897bd49f9f0c42da8726c21799bc04e64 00:51:15 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT 00:51:15 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT 00:51:15 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT 00:51:15 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT 00:51:15 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT 00:51:15 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT 00:51:15 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT 00:51:16 + deactivate 00:51:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:51:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:51:16 + export PATH 00:51:16 + unset _OLD_VIRTUAL_PATH 00:51:16 + '[' -n '' ']' 00:51:16 + '[' -n /bin/bash -o -n '' ']' 00:51:16 + hash -r 00:51:16 + '[' -n '' ']' 00:51:16 + unset VIRTUAL_ENV 00:51:16 + '[' '!' '' = nondestructive ']' 00:51:16 + unset -f deactivate 00:51:16 Finished: SUCCESS