Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins13497597594518602660.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop /tmp/jenkins13497597594518602660.sh: /home/omero/workspace/OMERO-server/.venv3/bin/omero: /home/omero/workspace/OMERO-server/.venv3/bin/python3.11: bad interpreter: No such file or directory + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 117 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 107 Copied 2 artifacts from "OMERO-build-build" build number 119 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9723711871971222536.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-689-429af68cc6-ice36-b117.zip + ZIP=OMERO.server-5.6.3-689-429af68cc6-ice36-b117.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-689-429af68cc6-ice36-b117 + unzip OMERO.server-5.6.3-689-429af68cc6-ice36-b117.zip Archive: OMERO.server-5.6.3-689-429af68cc6-ice36-b117.zip creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/blitz/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/grid/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/profiles/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/error/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/grid/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/server/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/share/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/share/licenses/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/misc/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/var/ creating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/var/tmp/ inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/LICENSE.txt inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/backup.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/build.properties inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/env.bat inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/env.sh inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/hibernate.properties inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/ice.config inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/logback-cli.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/logback.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/mime.types inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/node1.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/node2.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/omero.properties inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/profiles/psql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/rollover.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/grid/README inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/ice.config inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/master.cfg inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/templates/robot.template inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/etc/testdropbox.config inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/history.rst inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/activation.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/annotations.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/antlr.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/apache-client.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/arns.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/asm.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/auth.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aws-core.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aws-query-protocol.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/aws-xml-protocol.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/base.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/blosc-java.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/btm.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/caffeine.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/checksums-spi.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/checksums.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-compress.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-dbcp2.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-io.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-lang.jar inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/lib/client/commons-lang3.jar inflating: 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OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-689-429af68cc6-ice36-b117/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-689-429af68cc6-ice36-b117.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-429af68cc6-ice36-b117 /home/omero/workspace/OMERO-server/OMERO.server + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70' Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70 Downloading pip-26.2.2-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 9.9 MB/s eta 0:00:00 Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 24.0 Uninstalling pip-24.0: Successfully uninstalled pip-24.0 Successfully installed pip-26.2.2 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + python -m pip install --upgrade certifi Collecting certifi Downloading certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB) Downloading certifi-2026.10.23-py3-none-any.whl (135 kB) Installing collected packages: certifi Successfully installed certifi-2026.10.23 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.1 MB/s 0:00:02 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install markdown Collecting markdown Downloading markdown-3.11.3-py3-none-any.whl.metadata (5.1 kB) Downloading markdown-3.11.3-py3-none-any.whl (116 kB) Installing collected packages: markdown Successfully installed markdown-3.11.3 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install reportlab Collecting reportlab Downloading reportlab-5.1.0-py3-none-any.whl.metadata (1.6 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) Collecting charset-normalizer (from reportlab) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Downloading reportlab-5.1.0-py3-none-any.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 10.4 MB/s 0:00:00 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Installing collected packages: pillow, charset-normalizer, reportlab Successfully installed charset-normalizer-3.5.2 pillow-13.0.0 reportlab-5.1.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install pyarrow Collecting pyarrow Downloading pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) Downloading pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (55.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 55.0/55.0 MB 15.4 MB/s 0:00:03 Installing collected packages: pyarrow Successfully installed pyarrow-26.0.1 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install omego Collecting omego Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached omego-0.8.0-py3-none-any.whl (41 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install tables Collecting tables Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Downloading msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Collecting pydantic (from blosc2>=2.3.0->tables) Downloading pydantic-2.14.3-py3-none-any.whl.metadata (141 kB) Collecting httpx[http2] (from blosc2>=2.3.0->tables) Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) Collecting rich (from blosc2>=2.3.0->tables) Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) Collecting threadpoolctl (from blosc2>=2.3.0->tables) Downloading threadpoolctl-3.8.0-py3-none-any.whl.metadata (29 kB) Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) Downloading anyio-4.16.0-py3-none-any.whl.metadata (4.7 kB) Requirement already satisfied: certifi in ./.venv3/lib/python3.11/site-packages (from httpx[http2]->blosc2>=2.3.0->tables) (2026.10.23) Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) Collecting pydantic-core==2.50.4 (from pydantic->blosc2>=2.3.0->tables) Downloading pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.6 kB) Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables) Downloading typing_inspection-0.4.5-py3-none-any.whl.metadata (2.6 kB) Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB) Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) Using cached httpx-0.28.1-py3-none-any.whl (73 kB) Using cached h2-4.4.1-py3-none-any.whl (62 kB) Using cached hpack-4.2.0-py3-none-any.whl (34 kB) Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) Using cached h11-0.16.0-py3-none-any.whl (37 kB) Downloading anyio-4.16.0-py3-none-any.whl (134 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Downloading msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (480 kB) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) Using cached packaging-26.3-py3-none-any.whl (129 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Downloading pydantic-2.14.3-py3-none-any.whl (494 kB) Downloading pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (2.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 10.8 MB/s 0:00:00 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) Downloading typing_inspection-0.4.5-py3-none-any.whl (14 kB) Using cached rich-15.0.0-py3-none-any.whl (310 kB) Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB) Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) Downloading threadpoolctl-3.8.0-py3-none-any.whl (32 kB) Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables Successfully installed annotated-types-0.8.0 anyio-4.16.0 blosc2-4.14.1 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.4 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.3 pydantic-core-2.50.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.8.0 typing-inspection-0.4.5 typing_extensions-4.16.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install omero-py Collecting omero-py Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py) (13.0.0) Collecting PyYAML (from omero-py) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py) (3.6.5) Collecting requests (from omero-py) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting portalocker (from omero-py) Downloading portalocker-4.4.2-py3-none-any.whl.metadata (10 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.20) Collecting urllib3<3,>=1.26 (from requests->omero-py) Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (2026.10.23) Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Downloading portalocker-4.4.2-py3-none-any.whl (129 kB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached urllib3-2.8.0-py3-none-any.whl (135 kB) Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.2 requests-2.34.2 urllib3-2.8.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-uncsiaco/omero-metadata_dc102f4285f94586878054566632ad57 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-uncsiaco/omero-metadata_dc102f4285f94586878054566632ad57 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b722acf0a47da942161328839dfe5c3d41699808 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-metadata) (5.23.0) Collecting pandas<3,>=2 (from omero-metadata) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6) Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata) Downloading python_dateutil-4.0.0-py3-none-any.whl.metadata (7.3 kB) Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata) Downloading pytz-2026.6-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata) Downloading tzdata-2026.6-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (13.0.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.10.23) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) Downloading python_dateutil-4.0.0-py3-none-any.whl (92 kB) Downloading pytz-2026.6-py2.py3-none-any.whl (506 kB) Downloading tzdata-2026.6-py2.py3-none-any.whl (348 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=ebb0b4918e6dd8e2c151ce4f16953fe5e2558349dc5ffe1f7ed46cb311d6ebc8 Stored in directory: /tmp/pip-ephem-wheel-cache-f1tt_3j_/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-4.0.0 pytz-2026.6 tzdata-2026.6 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-j0d1phrt/omero-cli-render_2aba043b80da493bb34ed492e900d10a Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-j0d1phrt/omero-cli-render_2aba043b80da493bb34ed492e900d10a Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2a28a32cbdbed2c578d3fd828e6157aa9714301e Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (6.0.3) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (13.0.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.10.23) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=d31368fcb1a1c1d14623af38027d2a1eb322e221525762047807d98b5e0657aa Stored in directory: /tmp/pip-ephem-wheel-cache-d_pa3l1w/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-fi0etfqa/omero-cli-duplicate_5e533f0cf1814896abd92755d6369323 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-fi0etfqa/omero-cli-duplicate_5e533f0cf1814896abd92755d6369323 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 04581e169956afc690e3a842806942073d18f028 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (13.0.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.10.23) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=80004662e38df6a99f7d091d69cc8a93d54997e8fc49af8c750bcbc41e51ae81 Stored in directory: /tmp/pip-ephem-wheel-cache-6zt71wb2/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr Collecting omero-cli-zarr Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-7_bq7sh0/omero-cli-zarr_0fd7071bd105446c86e1ad8ac94be2c1 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-7_bq7sh0/omero-cli-zarr_0fd7071bd105446c86e1ad8ac94be2c1 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit e444e62d278fe4c0973aea459fe9739518708053 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-zarr) (5.23.0) Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: numpy in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB) Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB) Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB) Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Downloading click-8.5.1-py3-none-any.whl.metadata (2.6 kB) Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) Requirement already satisfied: packaging>=20.0 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Downloading importlib_metadata-10.1.0-py3-none-any.whl.metadata (4.5 kB) Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached s3fs-2026.9.0-py3-none-any.whl.metadata (1.2 kB) Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached zipp-4.1.2-py3-none-any.whl.metadata (3.6 kB) Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using 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s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Downloading aiobotocore-3.10.0-py3-none-any.whl.metadata (32 kB) Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) Collecting botocore<1.43.118,>=1.43.115 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Downloading botocore-1.43.117-py3-none-any.whl.metadata (5.6 kB) Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) Collecting multidict<8.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 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rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) Building wheels for collected packages: omero-cli-zarr Building wheel for omero-cli-zarr (pyproject.toml): started Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+ge444e62-py3-none-any.whl size=39539 sha256=2253ea8d40bc6a0206a699cf2a157b7c866bed99ccc47e8852d02df1e54a13d2 Stored in directory: /tmp/pip-ephem-wheel-cache-h8h0_azk/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 Successfully built omero-cli-zarr Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr Attempting uninstall: python-dateutil Found existing installation: python-dateutil 4.0.0 Uninstalling python-dateutil-4.0.0: Successfully uninstalled python-dateutil-4.0.0 Attempting uninstall: pydantic-core Found existing installation: pydantic_core 2.50.4 Uninstalling pydantic_core-2.50.4: Successfully uninstalled pydantic_core-2.50.4 Attempting uninstall: pydantic Found existing installation: pydantic 2.14.3 Uninstalling pydantic-2.14.3: Successfully uninstalled pydantic-2.14.3 Successfully installed Deprecated-1.3.1 aiobotocore-3.10.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.117 click-8.5.1 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-10.1.0 jmespath-1.1.0 lazy-loader-0.6 locket-1.0.0 multidict-7.2.1 networkx-3.6.1 numcodecs-0.16.6 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+ge444e62 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 python-dateutil-2.9.0.post0 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.2 yarl-1.25.1 zarr-3.1.6 zipp-4.1.2 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-certificates) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (13.0.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.10.23) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (13.0.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.10.23) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=a4aa5729b146f9c390a6d38e469d60da2e42514d2d75c8427695ddc4aaf2befc Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + for x in *.tar.gz + pip install -U omero_marshal-0.9.2.dev0.tar.gz Processing ./omero_marshal-0.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=8a4fe99e4a3a109c5fc6de005e953b9675d93e6dbce3199485cdf044cc14b11b Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.2.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + for x in *.tar.gz + pip install -U omero_py-5.23.1.dev0.tar.gz Processing ./omero_py-5.23.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (13.0.0) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.10.23) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787196 sha256=4894337b7dd55f42c1259411d3d7dc35337f5ef479ad03ad38df300514d66e4f Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.23.0 Uninstalling omero-py-5.23.0: Successfully uninstalled omero-py-5.23.0 Successfully installed omero-py-5.23.1.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + for x in *.tar.gz + pip install -U omero_scripts-5.10.1.dev0.tar.gz Processing ./omero_scripts-5.10.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137639 sha256=7e29cc6d4b4043a565f9912cdd1455381812911603f3b05b079d3c0d3518a85c Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.10.1.dev0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + for x in *.tar.gz + pip install -U omero_web-5.33.3.dev0.tar.gz Processing ./omero_web-5.33.3.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (5.23.1.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.3.dev0) Using cached concurrent_log_handler-0.9.31-py3-none-any.whl.metadata (30 kB) Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.3.dev0) Downloading django-5.2.19-py3-none-any.whl.metadata (4.1 kB) Collecting django-pipeline>=4.1.0 (from omero-web==5.33.3.dev0) Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.33.3.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.33.3.dev0) Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.33.3.dev0) Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (0.9.2.dev0) Requirement already satisfied: Pillow in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (13.0.0) Requirement already satisfied: pytz in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (2026.6) Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (4.4.2) Requirement already satisfied: packaging in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.3.dev0) (26.3) Collecting importlib-resources (from omero-web==5.33.3.dev0) Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) Downloading asgiref-3.13.0-py3-none-any.whl.metadata (12 kB) Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.3.dev0) Downloading sqlparse-0.6.1-py3-none-any.whl.metadata (6.9 kB) Requirement already satisfied: setuptools in ./.venv3/lib/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) (79.0.1) Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.3.dev0) Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.4.6) Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.34.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.5.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (3.20) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2.8.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.3.dev0) (2026.10.23) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Downloading django-5.2.19-py3-none-any.whl (8.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 14.3 MB/s 0:00:00 Downloading asgiref-3.13.0-py3-none-any.whl (27 kB) Using cached concurrent_log_handler-0.9.31-py3-none-any.whl (36 kB) Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB) Downloading sqlparse-0.6.1-py3-none-any.whl (51 kB) Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) Using cached wheel-0.48.0-py3-none-any.whl (33 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.33.3.dev0-py3-none-any.whl size=2820993 sha256=bc8141bf686a041abc7887600d6366f2c5e8844f77276616f83dd12a2e0f33a6 Stored in directory: /home/omero/.cache/pip/wheels/f9/cc/88/86aa2065a36d21a568dcadc16454372077670d9ca1a7b14a82 Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web Successfully installed Django-5.2.19 asgiref-3.13.0 concurrent-log-handler-0.9.31 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.3.dev0 sqlparse-0.6.1 wheel-0.48.0 whitenoise-6.12.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + wget https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2026-11-09 14:11:07-- https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 133725 (131K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 38% 2.90M 0s 50K .......... .......... .......... .......... .......... 76% 8.88M 0s 100K .......... .......... .......... 100% 4.24M=0.03s 2026-11-09 14:11:08 (4.34 MB/s) - ‘Figure_To_Pdf.py’ saved [133725/133725] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' + omero certificates OpenSSL 3.5.8 25 Aug 2026 (Library: OpenSSL 3.5.8 25 Aug 2026) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2026-11-09 14:12:02,448 [ omego.db] DEBUG dbcommand => upgrade 2026-11-09 14:12:02,449 [ omego.db] DEBUG dbhost => localhost 2026-11-09 14:12:02,449 [ omego.db] DEBUG dbname => OMERO-server 2026-11-09 14:12:02,449 [ omego.db] DEBUG dbpass => omero 2026-11-09 14:12:02,449 [ omego.db] DEBUG dbuser => omero 2026-11-09 14:12:02,449 [ omego.db] DEBUG rootpass => omero 2026-11-09 14:12:02,449 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2026-11-09 14:12:02,449 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-689-429af68cc6-ice36-b117 5.23.1.dev0 2026-11-09 14:12:07,021 [omego.extern] INFO Completed [4.572 s] 2026-11-09 14:12:07,021 [omego.extern] DEBUG Using omero CLI from omero 2026-11-09 14:12:07,021 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2026-11-09 14:12:07,022 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-11-09 14:12:07,022 [omego.extern] INFO Executing : omero config get --show-password 2026-11-09 14:12:11,427 [omego.extern] INFO Completed [4.406 s] 2026-11-09 14:12:11,427 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-11-09 14:12:11,428 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2026-11-09 14:12:11,440 [omego.extern] INFO Completed [0.012 s] 2026-11-09 14:12:11,440 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n' 2026-11-09 14:12:11,440 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15 2026-11-09 14:12:11,440 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-11-09 14:12:11,440 [omego.extern] INFO Executing : omero config get --show-password 2026-11-09 14:12:15,971 [omego.extern] INFO Completed [4.531 s] 2026-11-09 14:12:15,971 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-11-09 14:12:15,971 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2026-11-09 14:12:16,036 [omego.extern] INFO Completed [0.065 s] 2026-11-09 14:12:16,036 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n' 2026-11-09 14:12:16,037 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-11-09 14:12:16,037 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-11-09 14:12:16,037 [omego.extern] INFO Executing : omero config get --show-password 2026-11-09 14:12:20,413 [omego.extern] INFO Completed [4.377 s] 2026-11-09 14:12:20,413 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-11-09 14:12:20,413 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-11-09 14:12:20,934 [omego.extern] INFO Completed [0.520 s] 2026-11-09 14:12:20,934 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2026-11-09 14:12:20,934 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2026-11-09 14:12:20,973 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 21.0.13 (/usr/bin/java) Commands: python -V 3.11.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.15 (/usr/bin/psql) Commands: openssl version 3.5.825 (/usr/bin/openssl) Component: OMERO.py 5.23.1.dev0 Component: OMERO.server 5.6.3-689-429af68cc6-ice36-b117 Server: icegridnode running Server: Blitz-0 active (pid = 1496, enabled) Server: Indexer-0 active (pid = 1515, enabled) Server: OMERO.Glacier2 active (pid = 1546, enabled) Server: OMERO.IceStorm active (pid = 1545, enabled) Server: Processor-0 activating (enabled) Server: Tables-0 activating (enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 23.1 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 2.6 KB Log files: MonitorServer.log n/a Log files: Processor-0.log 592 B Log files: Tables-0.log 841 B Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.7 KB Log files: Total size 0.06 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx5007m JVM settings: Indexer-${index} -Xmx3338m JVM settings: PixelData-${index} -Xmx5007m JVM settings: Repository-${index} -Xmx3338m Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT 870640c5716d00c9ce57e369a570a2aa2eab97d6 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS