09:03:28 Started by upstream project "Trigger" build number 149 09:03:28 originally caused by: 09:03:28 Started by user devspace 09:03:28 Restarted from build #148, stage OMERO Python 09:03:28 Running as SYSTEM 09:03:29 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 09:03:29 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15165113784324490869.sh 09:03:29 + source /home/settings.env 09:03:29 ++ OMERO_DB_HOST=pg 09:03:29 ++ OMERO_DB_USER=postgres 09:03:29 ++ OMERO_DB_PASS= 09:03:29 ++ OMERO_ROOT_PASS=omero 09:03:29 ++ OMERO_DATA_DIR=/OMERO 09:03:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:03:29 + OMERO_DB_NAME=OMERO-server 09:03:29 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 09:03:29 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:03:29 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:03:29 + OMERO_DATA_DIR=/home/omero/omero-server-data 09:03:29 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 09:03:29 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 09:03:29 ++ deactivate nondestructive 09:03:29 ++ '[' -n '' ']' 09:03:29 ++ '[' -n '' ']' 09:03:29 ++ '[' -n /bin/bash -o -n '' ']' 09:03:29 ++ hash -r 09:03:29 ++ '[' -n '' ']' 09:03:29 ++ unset VIRTUAL_ENV 09:03:29 ++ '[' '!' nondestructive = nondestructive ']' 09:03:29 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 09:03:29 ++ export VIRTUAL_ENV 09:03:29 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:03:29 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:03:29 ++ export PATH 09:03:29 ++ '[' -n '' ']' 09:03:29 ++ '[' -z '' ']' 09:03:29 ++ _OLD_VIRTUAL_PS1= 09:03:29 ++ PS1='(.venv3) ' 09:03:29 ++ export PS1 09:03:29 ++ '[' -n /bin/bash -o -n '' ']' 09:03:29 ++ hash -r 09:03:29 + omero admin stop 09:03:49 Waiting on shutdown. Use CTRL-C to exit 09:03:49 .+ sleep 5 09:04:04 + deactivate 09:04:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 09:04:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:04:04 + export PATH 09:04:04 + unset _OLD_VIRTUAL_PATH 09:04:04 + '[' -n '' ']' 09:04:04 + '[' -n /bin/bash -o -n '' ']' 09:04:04 + hash -r 09:04:04 + '[' -n '' ']' 09:04:04 + unset VIRTUAL_ENV 09:04:04 + '[' '!' '' = nondestructive ']' 09:04:04 + unset -f deactivate 09:04:04 + rm -rf /home/omero/workspace/OMERO-server/.venv3 09:04:04 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 09:04:09 + '[' false = true ']' 09:04:09 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 09:04:09 Skipping PURGE_DATA:CleanDbAndRepo 09:04:09 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 09:04:15 Copied 1 artifact from "OMERO-build" build number 127 09:04:15 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 126 09:04:15 Copied 2 artifacts from "OMERO-build-build" build number 128 09:04:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10791567791646416838.sh 09:04:15 + source /home/settings.env 09:04:15 ++ OMERO_DB_HOST=pg 09:04:15 ++ OMERO_DB_USER=postgres 09:04:15 ++ OMERO_DB_PASS= 09:04:15 ++ OMERO_ROOT_PASS=omero 09:04:15 ++ OMERO_DATA_DIR=/OMERO 09:04:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:04:15 + OMERO_DB_NAME=OMERO-server 09:04:15 + OMERO_DATA_DIR=/home/omero/omero-server-data 09:04:15 + mkdir -p /home/omero/omero-server-data 09:04:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 09:04:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:04:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:04:15 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 09:04:15 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 09:04:15 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 09:04:15 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 09:04:15 ++ ls OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 09:04:15 + ZIP=OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 09:04:15 + '[' '!' -z '' ']' 09:04:15 + DIST=OMERO.server-5.6.3-486-6e4e8b4411-ice36 09:04:15 + unzip OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 09:04:15 Archive: OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/blitz/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/grid/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/profiles/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/error/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/grid/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/luts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/luts/janelia/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/luts/ncsa_paledit/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/luts/wcif/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/analysis_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/annotation_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/export_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/figure_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/import_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/scripts/omero/util_scripts/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/server/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/share/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/share/licenses/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/misc/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__1/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__10/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__11/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__2/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__3/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__4/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__5/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__6/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__7/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__8/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__9/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__4/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__5/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__6/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__7/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.1__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.2__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.2__0/t/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.3__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.4__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.0__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.1__1/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.2__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__1/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__2/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__3/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/ 09:04:15 creating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/var/ 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/LICENSE.txt 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/backup.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/blitz/mail-senders.example 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/blitz/mail-server.example 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/build.properties 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/env.bat 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/env.sh 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/hibernate.properties 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/ice.config 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/logback-cli.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/logback-indexing-cli.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/logback-indexing.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/logback.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/mime.types 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/node1.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/node2.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/omero.properties 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/profiles/psql 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/rollover.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/Windows.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/error/maintainance.html 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/grid/README 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/grid/default.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/grid/templates.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/grid/windefault.xml 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/ice.config 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/internal.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/master.cfg 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/templates/robot.template 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/etc/testdropbox.config 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/history.rst 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/OMEZarrReader.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/activation.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aggdesigner-algorithm.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aircompressor.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/annotations.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/antlr.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aopalliance.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/avatica-core.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/avatica-metrics.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aws-java-sdk-core.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aws-java-sdk-kms.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/aws-java-sdk-s3.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/base.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-all.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-anim.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-awt-util.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-bridge.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-codec.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-constants.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-css.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-dom.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-ext.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-extension.jar 09:04:15 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/lib/client/batik-gui-util.jar 09:04:15 inflating: 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OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__4/OMERO3__1.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/psql-header.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/schema.sql 09:04:18 inflating: OMERO.server-5.6.3-486-6e4e8b4411-ice36/sql/psql/OMERO5.4__0/views.sql 09:04:18 + rm -f OMERO.server-5.6.3-486-6e4e8b4411-ice36.zip 09:04:18 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-486-6e4e8b4411-ice36 /home/omero/workspace/OMERO-server/OMERO.server 09:04:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 09:04:18 ++ deactivate nondestructive 09:04:18 ++ '[' -n '' ']' 09:04:18 ++ '[' -n '' ']' 09:04:18 ++ '[' -n /bin/bash -o -n '' ']' 09:04:18 ++ hash -r 09:04:18 ++ '[' -n '' ']' 09:04:18 ++ unset VIRTUAL_ENV 09:04:18 ++ '[' '!' nondestructive = nondestructive ']' 09:04:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 09:04:18 ++ export VIRTUAL_ENV 09:04:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:04:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:04:18 ++ export PATH 09:04:18 ++ '[' -n '' ']' 09:04:18 ++ '[' -z '' ']' 09:04:18 ++ _OLD_VIRTUAL_PS1= 09:04:18 ++ PS1='(.venv3) ' 09:04:18 ++ export PS1 09:04:18 ++ '[' -n /bin/bash -o -n '' ']' 09:04:18 ++ hash -r 09:04:18 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 09:04:18 Collecting zeroc-ice==3.6.5 09:04:19 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 09:04:20 Installing collected packages: zeroc-ice 09:04:21 Successfully installed zeroc-ice-3.6.5 09:04:21 + pip install -U pip future 09:04:21 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 09:04:22 Collecting pip 09:04:22 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB) 09:04:22 Collecting future 09:04:22 Using cached future-1.0.0-py3-none-any.whl (491 kB) 09:04:22 Installing collected packages: pip, future 09:04:22 Attempting uninstall: pip 09:04:22 Found existing installation: pip 21.2.3 09:04:22 Uninstalling pip-21.2.3: 09:04:22 Successfully uninstalled pip-21.2.3 09:04:23 Successfully installed future-1.0.0 pip-24.1.2 09:04:23 + pip install markdown 09:04:24 Collecting markdown 09:04:24 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 09:04:24 Collecting importlib-metadata>=4.4 (from markdown) 09:04:24 Using cached importlib_metadata-8.1.0-py3-none-any.whl.metadata (4.7 kB) 09:04:24 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 09:04:24 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 09:04:24 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 09:04:24 Using cached importlib_metadata-8.1.0-py3-none-any.whl (25 kB) 09:04:24 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 09:04:24 Installing collected packages: zipp, importlib-metadata, markdown 09:04:24 Successfully installed importlib-metadata-8.1.0 markdown-3.6 zipp-3.19.2 09:04:24 + pip install reportlab 09:04:25 Collecting reportlab 09:04:25 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 09:04:26 Collecting pillow>=9.0.0 (from reportlab) 09:04:26 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 09:04:26 Collecting chardet (from reportlab) 09:04:26 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 09:04:26 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 09:04:26 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 09:04:26 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 09:04:26 Installing collected packages: pillow, chardet, reportlab 09:04:28 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 09:04:28 + pip install omego 09:04:29 Collecting omego 09:04:29 Using cached omego-0.7.0-py3-none-any.whl 09:04:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 09:04:29 Collecting yaclifw>=0.1.1 (from omego) 09:04:29 Using cached yaclifw-0.2.0-py3-none-any.whl 09:04:29 Collecting six (from yaclifw>=0.1.1->omego) 09:04:29 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 09:04:29 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 09:04:29 Installing collected packages: six, yaclifw, omego 09:04:29 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 09:04:29 + pip install tables 09:04:29 Collecting tables 09:04:29 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 09:04:30 Collecting numpy>=1.19.0 (from tables) 09:04:30 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 09:04:30 Collecting numexpr>=2.6.2 (from tables) 09:04:30 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 09:04:31 Collecting packaging (from tables) 09:04:31 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 09:04:31 Collecting py-cpuinfo (from tables) 09:04:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 09:04:31 Collecting blosc2>=2.3.0 (from tables) 09:04:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 09:04:31 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 09:04:31 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 09:04:31 Collecting msgpack (from blosc2>=2.3.0->tables) 09:04:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 09:04:31 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 09:04:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 09:04:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 09:04:31 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 09:04:32 Using cached packaging-24.1-py3-none-any.whl (53 kB) 09:04:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 09:04:32 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 09:04:32 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 09:04:32 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 09:04:35 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.1 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 09:04:35 + pip install jinja2 09:04:36 Collecting jinja2 09:04:36 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 09:04:37 Collecting MarkupSafe>=2.0 (from jinja2) 09:04:37 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 09:04:37 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 09:04:37 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 09:04:37 Installing collected packages: MarkupSafe, jinja2 09:04:37 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 09:04:37 + pip install omero-py 09:04:37 Collecting omero-py 09:04:37 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 09:04:38 Collecting urllib3<2 (from omero-py) 09:04:38 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 09:04:38 Collecting appdirs (from omero-py) 09:04:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 09:04:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 09:04:38 Collecting numpy<2 (from omero-py) 09:04:38 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 09:04:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 09:04:38 Collecting PyYAML (from omero-py) 09:04:38 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 09:04:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 09:04:38 Collecting requests (from omero-py) 09:04:38 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 09:04:39 Collecting portalocker (from omero-py) 09:04:39 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 09:04:39 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 09:04:39 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 09:04:39 Collecting idna<4,>=2.5 (from requests->omero-py) 09:04:39 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 09:04:39 Collecting certifi>=2017.4.17 (from requests->omero-py) 09:04:39 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 09:04:39 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 09:04:39 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 09:04:39 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 09:04:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 09:04:40 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 09:04:40 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 09:04:40 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 09:04:40 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 09:04:40 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 09:04:40 Using cached idna-3.7-py3-none-any.whl (66 kB) 09:04:40 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 09:04:41 Attempting uninstall: numpy 09:04:41 Found existing installation: numpy 2.0.1 09:04:41 Uninstalling numpy-2.0.1: 09:04:41 Successfully uninstalled numpy-2.0.1 09:04:45 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19 09:04:45 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 09:04:45 Collecting omero-metadata 09:04:45 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-y5xhx4kt/omero-metadata_647ef8795c3a48db91945ca6fcd87304 09:04:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-y5xhx4kt/omero-metadata_647ef8795c3a48db91945ca6fcd87304 09:04:46 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 7281b0f21683ab7a2ef3150ace9803da94b52deb 09:04:46 Installing build dependencies: started 09:04:48 Installing build dependencies: finished with status 'done' 09:04:48 Getting requirements to build wheel: started 09:04:49 Getting requirements to build wheel: finished with status 'done' 09:04:49 Preparing metadata (pyproject.toml): started 09:04:49 Preparing metadata (pyproject.toml): finished with status 'done' 09:04:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 09:04:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 09:04:49 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 09:04:50 Collecting pandas (from omero-metadata) 09:04:50 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 09:04:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 09:04:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 09:04:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 09:04:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 09:04:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 09:04:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 09:04:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 09:04:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 09:04:50 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 09:04:52 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 09:04:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 09:04:53 Collecting pytz>=2020.1 (from pandas->omero-metadata) 09:04:53 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 09:04:53 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 09:04:53 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 09:04:53 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 09:04:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 09:04:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 09:04:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4) 09:04:53 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 09:04:53 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 09:04:53 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 09:04:53 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 09:04:53 Building wheels for collected packages: omero-metadata 09:04:53 Building wheel for omero-metadata (pyproject.toml): started 09:04:54 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 09:04:54 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=77ee7967b6725d519792b36767d5e699713f2c88c8823f3d39c6b211dcf21942 09:04:54 Stored in directory: /tmp/pip-ephem-wheel-cache-afow4po1/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 09:04:54 Successfully built omero-metadata 09:04:54 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 09:04:59 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 09:04:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 09:04:59 Collecting omero-cli-render 09:04:59 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-trgp2p7n/omero-cli-render_0ce31086a0b7430aa9afc0b168bf1329 09:04:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-trgp2p7n/omero-cli-render_0ce31086a0b7430aa9afc0b168bf1329 09:05:00 Running command git checkout -b merge_ci --track origin/merge_ci 09:05:00 Switched to a new branch 'merge_ci' 09:05:00 branch 'merge_ci' set up to track 'origin/merge_ci'. 09:05:00 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2f29f4bd4254bd52cd9b00b9e403b752f834e818 09:05:00 Installing build dependencies: started 09:05:02 Installing build dependencies: finished with status 'done' 09:05:02 Getting requirements to build wheel: started 09:05:02 Getting requirements to build wheel: finished with status 'done' 09:05:02 Preparing metadata (pyproject.toml): started 09:05:03 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 09:05:03 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 09:05:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 09:05:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 09:05:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 09:05:03 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 09:05:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 09:05:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 09:05:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 09:05:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 09:05:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 09:05:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 09:05:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4) 09:05:03 Building wheels for collected packages: omero-cli-render 09:05:03 Building wheel for omero-cli-render (pyproject.toml): started 09:05:03 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 09:05:03 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=56cae4395ec2fd4466699535c4141c2297b46d8da909384a428c55f605cf9961 09:05:03 Stored in directory: /tmp/pip-ephem-wheel-cache-5dal4dy1/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 09:05:03 Successfully built omero-cli-render 09:05:03 Installing collected packages: omero-cli-render 09:05:03 Successfully installed omero-cli-render-0.8.1.dev0 09:05:03 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 09:05:03 Collecting omero-cli-duplicate 09:05:03 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-i9mnoxok/omero-cli-duplicate_eb6cde9edd4040ebb7228d1775c7dd75 09:05:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-i9mnoxok/omero-cli-duplicate_eb6cde9edd4040ebb7228d1775c7dd75 09:05:04 Running command git checkout -b merge_ci --track origin/merge_ci 09:05:05 Switched to a new branch 'merge_ci' 09:05:05 branch 'merge_ci' set up to track 'origin/merge_ci'. 09:05:05 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit b21104a456019c1e4542c924a00ba2d7af2d57d5 09:05:05 Installing build dependencies: started 09:05:06 Installing build dependencies: finished with status 'done' 09:05:06 Getting requirements to build wheel: started 09:05:07 Getting requirements to build wheel: finished with status 'done' 09:05:07 Preparing metadata (pyproject.toml): started 09:05:07 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:07 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 09:05:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 09:05:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 09:05:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 09:05:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 09:05:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 09:05:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 09:05:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 09:05:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 09:05:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 09:05:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 09:05:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 09:05:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4) 09:05:07 Building wheels for collected packages: omero-cli-duplicate 09:05:07 Building wheel for omero-cli-duplicate (pyproject.toml): started 09:05:07 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 09:05:07 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=a99bf8173692d94a64bfabfb446aaff5f60a3707b68aadf3698f7e7231b3a698 09:05:07 Stored in directory: /tmp/pip-ephem-wheel-cache-xbbe_cd7/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 09:05:07 Successfully built omero-cli-duplicate 09:05:07 Installing collected packages: omero-cli-duplicate 09:05:07 Successfully installed omero-cli-duplicate-0.4.1.dev0 09:05:07 + pip install omero-certificates 09:05:08 Collecting omero-certificates 09:05:08 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 09:05:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 09:05:08 Collecting distro==1.8.0 (from omero-certificates) 09:05:08 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 09:05:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 09:05:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 09:05:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 09:05:08 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 09:05:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 09:05:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 09:05:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 09:05:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 09:05:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 09:05:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 09:05:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 09:05:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4) 09:05:08 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 09:05:08 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 09:05:08 Installing collected packages: distro, omero-certificates 09:05:08 Successfully installed distro-1.8.0 omero-certificates-0.3.2 09:05:08 + for x in *.tar.gz 09:05:08 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 09:05:09 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 09:05:09 Installing build dependencies: started 09:05:11 Installing build dependencies: finished with status 'done' 09:05:11 Getting requirements to build wheel: started 09:05:11 Getting requirements to build wheel: finished with status 'done' 09:05:11 Preparing metadata (pyproject.toml): started 09:05:11 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:11 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 09:05:11 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 09:05:11 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 09:05:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 09:05:11 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 09:05:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 09:05:11 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1) 09:05:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 09:05:11 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 09:05:11 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 09:05:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 09:05:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 09:05:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4) 09:05:11 Building wheels for collected packages: omero-dropbox 09:05:11 Building wheel for omero-dropbox (pyproject.toml): started 09:05:11 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 09:05:11 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=e5adabc20dbd57a0158ee5ebc725febd6bfe934851f2b45bd2affa3e5389f861 09:05:11 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 09:05:11 Successfully built omero-dropbox 09:05:11 Installing collected packages: omero-dropbox 09:05:11 Successfully installed omero-dropbox-5.7.1.dev0 09:05:11 + for x in *.tar.gz 09:05:11 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 09:05:12 Processing ./omero_marshal-0.9.1.dev0.tar.gz 09:05:12 Installing build dependencies: started 09:05:14 Installing build dependencies: finished with status 'done' 09:05:14 Getting requirements to build wheel: started 09:05:14 Getting requirements to build wheel: finished with status 'done' 09:05:14 Preparing metadata (pyproject.toml): started 09:05:14 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:14 Building wheels for collected packages: omero_marshal 09:05:14 Building wheel for omero_marshal (pyproject.toml): started 09:05:14 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 09:05:14 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ca1f830efd3c48655a15ee4d4bbe67bf4d69f79f3a85edfc61f491e43aa8839c 09:05:14 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 09:05:14 Successfully built omero_marshal 09:05:14 Installing collected packages: omero_marshal 09:05:15 Successfully installed omero_marshal-0.9.1.dev0 09:05:15 + for x in *.tar.gz 09:05:15 + pip install -U omero_py-5.19.5.dev0.tar.gz 09:05:15 Processing ./omero_py-5.19.5.dev0.tar.gz 09:05:15 Installing build dependencies: started 09:05:17 Installing build dependencies: finished with status 'done' 09:05:17 Getting requirements to build wheel: started 09:05:17 Getting requirements to build wheel: finished with status 'done' 09:05:17 Preparing metadata (pyproject.toml): started 09:05:18 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19) 09:05:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 09:05:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 09:05:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 09:05:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 09:05:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.1) 09:05:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 09:05:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 09:05:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 09:05:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 09:05:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.7) 09:05:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4) 09:05:18 Building wheels for collected packages: omero-py 09:05:18 Building wheel for omero-py (pyproject.toml): started 09:05:19 Building wheel for omero-py (pyproject.toml): finished with status 'done' 09:05:19 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782907 sha256=15e320413d67345377a969f69d55a82b09d6a4bcb4988ef30f834bccbe90364f 09:05:19 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 09:05:19 Successfully built omero-py 09:05:19 Installing collected packages: omero-py 09:05:19 Attempting uninstall: omero-py 09:05:19 Found existing installation: omero-py 5.19.4 09:05:19 Uninstalling omero-py-5.19.4: 09:05:19 Successfully uninstalled omero-py-5.19.4 09:05:21 Successfully installed omero-py-5.19.5.dev0 09:05:21 + for x in *.tar.gz 09:05:21 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 09:05:22 Processing ./omero_scripts-5.8.3.dev0.tar.gz 09:05:22 Installing build dependencies: started 09:05:24 Installing build dependencies: finished with status 'done' 09:05:24 Getting requirements to build wheel: started 09:05:24 Getting requirements to build wheel: finished with status 'done' 09:05:24 Preparing metadata (pyproject.toml): started 09:05:24 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:24 Building wheels for collected packages: omero-scripts 09:05:24 Building wheel for omero-scripts (pyproject.toml): started 09:05:24 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 09:05:24 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116556 sha256=734924e121ae767e16757263bc609904a0cdede343d8e70c531d596953a23775 09:05:24 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 09:05:24 Successfully built omero-scripts 09:05:24 Installing collected packages: omero-scripts 09:05:24 Successfully installed omero-scripts-5.8.3.dev0 09:05:24 + for x in *.tar.gz 09:05:24 + pip install -U omero_web-5.26.1.dev0.tar.gz 09:05:25 Processing ./omero_web-5.26.1.dev0.tar.gz 09:05:25 Installing build dependencies: started 09:05:27 Installing build dependencies: finished with status 'done' 09:05:27 Getting requirements to build wheel: started 09:05:27 Getting requirements to build wheel: finished with status 'done' 09:05:27 Preparing metadata (pyproject.toml): started 09:05:27 Preparing metadata (pyproject.toml): finished with status 'done' 09:05:27 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.5.dev0) 09:05:28 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0) 09:05:28 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 09:05:28 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0) 09:05:28 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB) 09:05:28 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0) 09:05:28 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 09:05:28 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0) 09:05:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 09:05:28 Collecting django-csp (from omero-web==5.26.1.dev0) 09:05:28 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 09:05:28 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0) 09:05:28 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 09:05:28 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0) 09:05:28 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 09:05:28 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0) 09:05:28 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0) 09:05:28 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1) 09:05:28 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1) 09:05:28 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1) 09:05:28 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 09:05:28 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 09:05:28 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 09:05:28 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 09:05:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19) 09:05:28 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4) 09:05:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0) 09:05:28 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4) 09:05:28 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1) 09:05:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5) 09:05:28 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3) 09:05:29 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 09:05:29 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 09:05:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2) 09:05:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7) 09:05:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4) 09:05:29 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 09:05:29 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 09:05:29 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 09:05:29 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB) 09:05:29 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 09:05:29 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 09:05:29 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 09:05:29 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 09:05:29 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 09:05:29 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 09:05:29 Building wheels for collected packages: omero-web 09:05:29 Building wheel for omero-web (pyproject.toml): started 09:05:30 Building wheel for omero-web (pyproject.toml): finished with status 'done' 09:05:30 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765303 sha256=0395447d7efbde165c3127103b5bcb9a61abd1b40f6f0e0bcf91b163e73d0490 09:05:30 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453 09:05:30 Successfully built omero-web 09:05:30 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 09:05:33 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 09:05:33 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 09:05:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 09:05:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 09:05:34 --2024-07-24 09:05:34-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 09:05:35 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ... 09:05:35 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 09:05:35 HTTP request sent, awaiting response... 200 OK 09:05:35 Length: 95703 (93K) [text/plain] 09:05:35 Saving to: ‘Figure_To_Pdf.py’ 09:05:35 09:05:35 0K .......... .......... .......... .......... .......... 53% 2.87M 0s 09:05:35 50K .......... .......... .......... .......... ... 100% 7.51M=0.02s 09:05:35 09:05:35 2024-07-24 09:05:35 (4.03 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703] 09:05:35 09:05:35 + chmod 755 Figure_To_Pdf.py 09:05:35 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 09:05:35 + omero config set omero.db.name OMERO-server 09:05:36 + omero config set omero.db.host pg 09:05:37 + omero config set omero.db.user postgres 09:05:39 + omero config set omero.data.dir /home/omero/omero-server-data 09:05:40 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 09:05:41 + omero config set omero.db.poolsize 25 09:05:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 09:05:44 + omero config set omero.security.trustStorePassword changeit 09:05:45 + omero config set omero.mail.config true 09:05:47 + omero config set omero.mail.from qa@openmicroscopy.org.uk 09:05:48 + omero config set omero.mail.host smtp.dundee.ac.uk 09:05:49 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 09:05:50 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 09:05:52 + omero certificates 09:05:53 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 09:05:54 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 09:05:54 + '[' false = true ']' 09:05:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 09:05:54 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 09:05:54 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG dbcommand => upgrade 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG dbhost => localhost 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG dbname => OMERO-server 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG dbpass => omero 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG dbuser => omero 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG rootpass => omero 09:05:54 2024-07-24 09:05:54,333 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 09:05:54 2024-07-24 09:05:54,333 [omego.extern] INFO Executing : omero version 09:05:55 OMERO.py version: 09:05:55 OMERO.server version: 09:05:55 5.6.3-486-6e4e8b4411-ice36 09:05:55 5.19.5.dev0 09:05:55 2024-07-24 09:05:55,695 [omego.extern] INFO Completed [1.362 s] 09:05:55 2024-07-24 09:05:55,695 [omego.extern] DEBUG Using omero CLI from omero 09:05:55 2024-07-24 09:05:55,695 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 09:05:55 2024-07-24 09:05:55,695 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:05:55 2024-07-24 09:05:55,696 [omego.extern] INFO Executing : omero config get --show-password 09:05:57 2024-07-24 09:05:57,022 [omego.extern] INFO Completed [1.327 s] 09:05:57 2024-07-24 09:05:57,023 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:05:57 2024-07-24 09:05:57,023 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 09:05:57 2024-07-24 09:05:57,282 [omego.extern] INFO Completed [0.259 s] 09:05:57 2024-07-24 09:05:57,282 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 09:05:57 2024-07-24 09:05:57,283 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 09:05:57 09:05:57 2024-07-24 09:05:57,283 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:05:57 2024-07-24 09:05:57,283 [omego.extern] INFO Executing : omero config get --show-password 09:05:58 2024-07-24 09:05:58,576 [omego.extern] INFO Completed [1.293 s] 09:05:58 2024-07-24 09:05:58,576 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:05:58 2024-07-24 09:05:58,576 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 09:05:58 2024-07-24 09:05:58,596 [omego.extern] INFO Completed [0.019 s] 09:05:58 2024-07-24 09:05:58,596 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.4") at port "5432".\n' 09:05:58 2024-07-24 09:05:58,596 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 09:05:58 2024-07-24 09:05:58,596 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:05:58 2024-07-24 09:05:58,596 [omego.extern] INFO Executing : omero config get --show-password 09:05:59 2024-07-24 09:05:59,926 [omego.extern] INFO Completed [1.330 s] 09:05:59 2024-07-24 09:05:59,927 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:05:59 2024-07-24 09:05:59,927 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 09:06:00 2024-07-24 09:06:00,994 [omego.extern] INFO Completed [1.067 s] 09:06:00 2024-07-24 09:06:00,994 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 09:06:00 2024-07-24 09:06:00,994 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 09:06:00 2024-07-24 09:06:00,996 [ omego.db] INFO Database is already at OMERO5.4__0 09:06:01 + export LANG=en_US.UTF-8 09:06:01 + LANG=en_US.UTF-8 09:06:01 + export LANGUAGE=en_US:en 09:06:01 + LANGUAGE=en_US:en 09:06:01 + export LC_ALL=en_US.UTF-8 09:06:01 + LC_ALL=en_US.UTF-8 09:06:01 + BUILD_ID=DONT_KILL_ME 09:06:01 + omero admin start 09:06:10 No descriptor given. Using etc/grid/default.xml 09:06:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 09:06:20 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 09:06:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 09:06:20 Waiting on startup. Use CTRL-C to exit 09:06:20 + omero admin waitup 09:06:21 Waiting on startup. Use CTRL-C to exit 09:06:21 + omero admin diagnostics 09:06:23 09:06:23 ================================================================================ 09:06:23 OMERO Diagnostics (admin) 09:06:23 ================================================================================ 09:06:23 09:06:23 Commands: java -version 11.0.22 (/usr/bin/java) 09:06:23 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 09:06:23 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 09:06:23 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 09:06:23 Commands: psql --version 16.2 (/usr/bin/psql) 09:06:23 Commands: openssl version 3.0.71 (/usr/bin/openssl) 09:06:23 09:06:23 Component: OMERO.py 5.19.5.dev0 09:06:23 Component: OMERO.server 5.6.3-486-6e4e8b4411-ice36 09:06:23 09:06:23 Server: icegridnode running 09:06:23 Server: Blitz-0 active (pid = 33160, enabled) 09:06:23 Server: Indexer-0 activating (enabled) 09:06:23 Server: OMERO.Glacier2 active (pid = 33184, enabled) 09:06:23 Server: OMERO.IceStorm active (pid = 33211, enabled) 09:06:23 Server: Processor-0 activating (enabled) 09:06:23 Server: Tables-0 activating (enabled) 09:06:23 09:06:23 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 09:06:23 Log files: Blitz-0.log 20.7 KB errors=0 warnings=1 09:06:23 Log files: DropBox.log n/a 09:06:23 Log files: FileServer.log n/a 09:06:23 Log files: Indexer-0.log 598 B 09:06:23 Log files: MonitorServer.log n/a 09:06:23 Log files: Processor-0.log 281 B 09:06:23 Log files: Tables-0.log 281 B 09:06:23 Log files: TestDropBox.log n/a 09:06:23 Log files: master.err 180 B 09:06:23 Log files: master.out 30.1 KB 09:06:23 Log files: Total size 0.05 MB 09:06:23 09:06:23 09:06:23 Environment:OMERO_HOME=(unset) 09:06:23 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:06:23 Environment:OMERO_NODE=(unset) 09:06:23 Environment:OMERO_MASTER=(unset) 09:06:23 Environment:OMERO_USERDIR=(unset) 09:06:23 Environment:OMERO_TMPDIR=(unset) 09:06:23 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:06:23 Environment:PYTHONPATH=(unset) 09:06:23 Environment:ICE_HOME=/opt/ice-3.6.5 09:06:23 Environment:LD_LIBRARY_PATH=(unset) 09:06:23 Environment:DYLD_LIBRARY_PATH=(unset) 09:06:23 09:06:23 OMERO SSL port:4064 09:06:23 OMERO TCP port:4063 09:06:23 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 09:06:23 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 09:06:23 09:06:23 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 09:06:23 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 09:06:23 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 09:06:23 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 09:06:23 09:06:23 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 09:06:23 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 09:06:23 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 09:06:23 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 09:06:23 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT 09:06:23 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT 09:06:23 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT 09:06:23 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT 09:06:23 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT 09:06:23 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT 09:06:23 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT 09:06:23 + deactivate 09:06:23 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 09:06:23 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:06:23 + export PATH 09:06:23 + unset _OLD_VIRTUAL_PATH 09:06:23 + '[' -n '' ']' 09:06:23 + '[' -n /bin/bash -o -n '' ']' 09:06:23 + hash -r 09:06:23 + '[' -n '' ']' 09:06:23 + unset VIRTUAL_ENV 09:06:23 + '[' '!' '' = nondestructive ']' 09:06:23 + unset -f deactivate 09:06:23 Finished: SUCCESS