13:12:49 Started by upstream project "Trigger" build number 150 13:12:49 originally caused by: 13:12:49 Started by user devspace 13:12:49 Restarted from build #149, stage OMERO Distribution 13:12:49 Running as SYSTEM 13:12:49 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 13:12:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11691042458367802673.sh 13:12:49 + source /home/settings.env 13:12:49 ++ OMERO_DB_HOST=pg 13:12:49 ++ OMERO_DB_USER=postgres 13:12:49 ++ OMERO_DB_PASS= 13:12:49 ++ OMERO_ROOT_PASS=omero 13:12:49 ++ OMERO_DATA_DIR=/OMERO 13:12:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:12:49 + OMERO_DB_NAME=OMERO-server 13:12:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:12:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:12:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:12:49 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:12:49 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 13:12:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:12:49 ++ deactivate nondestructive 13:12:49 ++ '[' -n '' ']' 13:12:49 ++ '[' -n '' ']' 13:12:49 ++ '[' -n /bin/bash -o -n '' ']' 13:12:49 ++ hash -r 13:12:49 ++ '[' -n '' ']' 13:12:49 ++ unset VIRTUAL_ENV 13:12:49 ++ '[' '!' nondestructive = nondestructive ']' 13:12:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:12:49 ++ export VIRTUAL_ENV 13:12:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:12:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:12:49 ++ export PATH 13:12:49 ++ '[' -n '' ']' 13:12:49 ++ '[' -z '' ']' 13:12:49 ++ _OLD_VIRTUAL_PS1= 13:12:49 ++ PS1='(.venv3) ' 13:12:49 ++ export PS1 13:12:49 ++ '[' -n /bin/bash -o -n '' ']' 13:12:49 ++ hash -r 13:12:49 + omero admin stop 13:12:50 Waiting on shutdown. Use CTRL-C to exit 13:12:50 .+ sleep 5 13:13:05 + deactivate 13:13:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:13:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:13:05 + export PATH 13:13:05 + unset _OLD_VIRTUAL_PATH 13:13:05 + '[' -n '' ']' 13:13:05 + '[' -n /bin/bash -o -n '' ']' 13:13:05 + hash -r 13:13:05 + '[' -n '' ']' 13:13:05 + unset VIRTUAL_ENV 13:13:05 + '[' '!' '' = nondestructive ']' 13:13:05 + unset -f deactivate 13:13:05 + rm -rf /home/omero/workspace/OMERO-server/.venv3 13:13:06 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 13:13:08 + '[' false = true ']' 13:13:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 13:13:08 Skipping PURGE_DATA:CleanDbAndRepo 13:13:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 13:13:11 Copied 1 artifact from "OMERO-build" build number 128 13:13:11 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 126 13:13:12 Copied 2 artifacts from "OMERO-build-build" build number 128 13:13:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16285614312780004289.sh 13:13:12 + source /home/settings.env 13:13:12 ++ OMERO_DB_HOST=pg 13:13:12 ++ OMERO_DB_USER=postgres 13:13:12 ++ OMERO_DB_PASS= 13:13:12 ++ OMERO_ROOT_PASS=omero 13:13:12 ++ OMERO_DATA_DIR=/OMERO 13:13:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:13:12 + OMERO_DB_NAME=OMERO-server 13:13:12 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:13:12 + mkdir -p /home/omero/omero-server-data 13:13:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:13:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:13:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:13:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:13:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:13:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:13:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:13:12 ++ ls OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:13:12 + ZIP=OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:13:12 + '[' '!' -z '' ']' 13:13:12 + DIST=OMERO.server-5.6.3-485-ec16e0d4cd-ice36 13:13:12 + unzip OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:13:12 Archive: OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/grid/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/profiles/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/error/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/janelia/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/ncsa_paledit/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/wcif/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/analysis_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/annotation_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/export_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/figure_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/import_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/util_scripts/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/server/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/share/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/share/licenses/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/misc/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__1/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__10/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__11/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__2/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__3/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__4/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__5/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__6/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__7/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__8/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__9/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__4/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__5/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__6/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__7/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.1__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/t/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.3__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.4__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.0__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.2__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__1/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__2/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__3/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/ 13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/var/ 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/LICENSE.txt 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/backup.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/mail-senders.example 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/mail-server.example 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/build.properties 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/env.bat 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/env.sh 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/hibernate.properties 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/ice.config 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-cli.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-indexing-cli.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-indexing.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/mime.types 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/node1.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/node2.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/omero.properties 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/profiles/psql 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/rollover.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/Windows.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/error/maintainance.html 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/README 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/default.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/templates.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/windefault.xml 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/ice.config 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/internal.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/master.cfg 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/robot.template 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/testdropbox.config 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/history.rst 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/OMEZarrReader.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/activation.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aggdesigner-algorithm.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aircompressor.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/annotations.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/antlr.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aopalliance.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/avatica-core.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/avatica-metrics.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-core.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-kms.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-s3.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/base.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-all.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-anim.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-awt-util.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-bridge.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-codec.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-constants.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-css.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-dom.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-ext.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-extension.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-gui-util.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-gvt.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-i18n.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-parser.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-rasterizer-ext.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-rasterizer.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-script.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-slideshow.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-squiggle-ext.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-squiggle.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svg-dom.jar 13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svgbrowser.jar 13:13:12 inflating: 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OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/psql-header.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/schema.sql 13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/views.sql 13:13:14 + rm -f OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip 13:13:14 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-485-ec16e0d4cd-ice36 /home/omero/workspace/OMERO-server/OMERO.server 13:13:14 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:13:14 ++ deactivate nondestructive 13:13:14 ++ '[' -n '' ']' 13:13:14 ++ '[' -n '' ']' 13:13:14 ++ '[' -n /bin/bash -o -n '' ']' 13:13:14 ++ hash -r 13:13:14 ++ '[' -n '' ']' 13:13:14 ++ unset VIRTUAL_ENV 13:13:14 ++ '[' '!' nondestructive = nondestructive ']' 13:13:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:13:14 ++ export VIRTUAL_ENV 13:13:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:13:14 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:13:14 ++ export PATH 13:13:14 ++ '[' -n '' ']' 13:13:14 ++ '[' -z '' ']' 13:13:14 ++ _OLD_VIRTUAL_PS1= 13:13:14 ++ PS1='(.venv3) ' 13:13:14 ++ export PS1 13:13:14 ++ '[' -n /bin/bash -o -n '' ']' 13:13:14 ++ hash -r 13:13:14 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 13:13:15 Collecting zeroc-ice==3.6.5 13:13:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 13:13:17 Installing collected packages: zeroc-ice 13:13:18 Successfully installed zeroc-ice-3.6.5 13:13:18 + pip install -U pip future 13:13:18 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 13:13:18 Collecting pip 13:13:18 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB) 13:13:18 Collecting future 13:13:18 Using cached future-1.0.0-py3-none-any.whl (491 kB) 13:13:18 Installing collected packages: pip, future 13:13:18 Attempting uninstall: pip 13:13:18 Found existing installation: pip 21.2.3 13:13:19 Uninstalling pip-21.2.3: 13:13:19 Successfully uninstalled pip-21.2.3 13:13:20 Successfully installed future-1.0.0 pip-24.1.2 13:13:20 + pip install markdown 13:13:20 Collecting markdown 13:13:20 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 13:13:20 Collecting importlib-metadata>=4.4 (from markdown) 13:13:20 Using cached importlib_metadata-8.1.0-py3-none-any.whl.metadata (4.7 kB) 13:13:20 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 13:13:20 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 13:13:20 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 13:13:20 Using cached importlib_metadata-8.1.0-py3-none-any.whl (25 kB) 13:13:20 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 13:13:20 Installing collected packages: zipp, importlib-metadata, markdown 13:13:21 Successfully installed importlib-metadata-8.1.0 markdown-3.6 zipp-3.19.2 13:13:21 + pip install reportlab 13:13:21 Collecting reportlab 13:13:21 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 13:13:21 Collecting pillow>=9.0.0 (from reportlab) 13:13:21 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 13:13:21 Collecting chardet (from reportlab) 13:13:21 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 13:13:21 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 13:13:21 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 13:13:22 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 13:13:22 Installing collected packages: pillow, chardet, reportlab 13:13:23 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 13:13:23 + pip install omego 13:13:23 Collecting omego 13:13:23 Using cached omego-0.7.0-py3-none-any.whl 13:13:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 13:13:23 Collecting yaclifw>=0.1.1 (from omego) 13:13:23 Using cached yaclifw-0.2.0-py3-none-any.whl 13:13:23 Collecting six (from yaclifw>=0.1.1->omego) 13:13:23 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 13:13:23 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 13:13:23 Installing collected packages: six, yaclifw, omego 13:13:23 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 13:13:23 + pip install tables 13:13:24 Collecting tables 13:13:24 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 13:13:24 Collecting numpy>=1.19.0 (from tables) 13:13:24 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 13:13:24 Collecting numexpr>=2.6.2 (from tables) 13:13:24 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 13:13:24 Collecting packaging (from tables) 13:13:24 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 13:13:24 Collecting py-cpuinfo (from tables) 13:13:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 13:13:25 Collecting blosc2>=2.3.0 (from tables) 13:13:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 13:13:25 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 13:13:25 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 13:13:25 Collecting msgpack (from blosc2>=2.3.0->tables) 13:13:25 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 13:13:25 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 13:13:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 13:13:25 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 13:13:25 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 13:13:25 Using cached packaging-24.1-py3-none-any.whl (53 kB) 13:13:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 13:13:25 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 13:13:25 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 13:13:25 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 13:13:28 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.1 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 13:13:28 + pip install jinja2 13:13:28 Collecting jinja2 13:13:28 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 13:13:28 Collecting MarkupSafe>=2.0 (from jinja2) 13:13:28 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 13:13:28 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 13:13:28 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 13:13:29 Installing collected packages: MarkupSafe, jinja2 13:13:29 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 13:13:29 + pip install omero-py 13:13:29 Collecting omero-py 13:13:29 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 13:13:29 Collecting urllib3<2 (from omero-py) 13:13:29 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 13:13:29 Collecting appdirs (from omero-py) 13:13:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 13:13:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 13:13:30 Collecting numpy<2 (from omero-py) 13:13:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 13:13:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 13:13:30 Collecting PyYAML (from omero-py) 13:13:30 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 13:13:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 13:13:30 Collecting requests (from omero-py) 13:13:30 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 13:13:30 Collecting portalocker (from omero-py) 13:13:30 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 13:13:30 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 13:13:30 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 13:13:30 Collecting idna<4,>=2.5 (from requests->omero-py) 13:13:30 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 13:13:30 Collecting certifi>=2017.4.17 (from requests->omero-py) 13:13:30 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 13:13:30 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 13:13:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 13:13:30 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 13:13:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 13:13:30 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 13:13:30 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 13:13:30 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 13:13:30 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 13:13:30 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 13:13:30 Using cached idna-3.7-py3-none-any.whl (66 kB) 13:13:30 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 13:13:30 Attempting uninstall: numpy 13:13:30 Found existing installation: numpy 2.0.1 13:13:30 Uninstalling numpy-2.0.1: 13:13:30 Successfully uninstalled numpy-2.0.1 13:13:34 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19 13:13:34 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 13:13:35 Collecting omero-metadata 13:13:35 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-n06aitpb/omero-metadata_3184d800f42341378a2668add14f5783 13:13:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-n06aitpb/omero-metadata_3184d800f42341378a2668add14f5783 13:13:36 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e256a273a4e52cf66d3ae0ef4064aed37881a5c0 13:13:36 Installing build dependencies: started 13:13:38 Installing build dependencies: finished with status 'done' 13:13:38 Getting requirements to build wheel: started 13:13:38 Getting requirements to build wheel: finished with status 'done' 13:13:38 Preparing metadata (pyproject.toml): started 13:13:38 Preparing metadata (pyproject.toml): finished with status 'done' 13:13:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 13:13:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 13:13:38 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 13:13:38 Collecting pandas (from omero-metadata) 13:13:38 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 13:13:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 13:13:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 13:13:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 13:13:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 13:13:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 13:13:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 13:13:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 13:13:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 13:13:38 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 13:13:38 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 13:13:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 13:13:38 Collecting pytz>=2020.1 (from pandas->omero-metadata) 13:13:38 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 13:13:38 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 13:13:38 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 13:13:38 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 13:13:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 13:13:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 13:13:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4) 13:13:38 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 13:13:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 13:13:38 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 13:13:38 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 13:13:38 Building wheels for collected packages: omero-metadata 13:13:38 Building wheel for omero-metadata (pyproject.toml): started 13:13:39 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 13:13:39 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=361eef5baa830df87eeae60bced88ab215202f899cdca6fb74d6c7bb3bdf0583 13:13:39 Stored in directory: /tmp/pip-ephem-wheel-cache-ijiv6rhx/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 13:13:39 Successfully built omero-metadata 13:13:39 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 13:13:44 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 13:13:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 13:13:44 Collecting omero-cli-render 13:13:44 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-zjg73c17/omero-cli-render_b65a337910bf4804acc81d68ddef2e84 13:13:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-zjg73c17/omero-cli-render_b65a337910bf4804acc81d68ddef2e84 13:13:46 Running command git checkout -b merge_ci --track origin/merge_ci 13:13:47 Switched to a new branch 'merge_ci' 13:13:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:13:47 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 4aed2f924c48a951bedf8a755b54baa416335656 13:13:47 Installing build dependencies: started 13:13:49 Installing build dependencies: finished with status 'done' 13:13:49 Getting requirements to build wheel: started 13:13:49 Getting requirements to build wheel: finished with status 'done' 13:13:49 Preparing metadata (pyproject.toml): started 13:13:50 Preparing metadata (pyproject.toml): finished with status 'done' 13:13:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 13:13:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 13:13:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 13:13:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 13:13:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 13:13:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 13:13:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 13:13:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 13:13:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 13:13:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 13:13:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 13:13:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 13:13:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4) 13:13:50 Building wheels for collected packages: omero-cli-render 13:13:50 Building wheel for omero-cli-render (pyproject.toml): started 13:13:50 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 13:13:50 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=a1d015d83d3eb10ca346b58683506973f55485c166cac4009ccfc05336634a73 13:13:50 Stored in directory: /tmp/pip-ephem-wheel-cache-kergxt0e/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 13:13:50 Successfully built omero-cli-render 13:13:50 Installing collected packages: omero-cli-render 13:13:50 Successfully installed omero-cli-render-0.8.1.dev0 13:13:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 13:13:50 Collecting omero-cli-duplicate 13:13:50 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-aw2bcatc/omero-cli-duplicate_f00a27518bdd41eeb7c39ce33a82b482 13:13:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-aw2bcatc/omero-cli-duplicate_f00a27518bdd41eeb7c39ce33a82b482 13:13:51 Running command git checkout -b merge_ci --track origin/merge_ci 13:13:52 Switched to a new branch 'merge_ci' 13:13:52 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:13:52 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c8badf0c1893aa0885211aadb6773f22711d34cc 13:13:52 Installing build dependencies: started 13:13:53 Installing build dependencies: finished with status 'done' 13:13:53 Getting requirements to build wheel: started 13:13:54 Getting requirements to build wheel: finished with status 'done' 13:13:54 Preparing metadata (pyproject.toml): started 13:13:54 Preparing metadata (pyproject.toml): finished with status 'done' 13:13:54 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 13:13:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 13:13:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 13:13:54 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 13:13:54 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 13:13:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 13:13:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 13:13:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 13:13:54 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 13:13:54 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 13:13:54 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 13:13:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 13:13:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4) 13:13:54 Building wheels for collected packages: omero-cli-duplicate 13:13:54 Building wheel for omero-cli-duplicate (pyproject.toml): started 13:13:54 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 13:13:54 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=8b199dcffa2dd86075e273ad62a8666aaf720fca7dfd6ac633be1e291ec0f806 13:13:54 Stored in directory: /tmp/pip-ephem-wheel-cache-nxq7m16l/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 13:13:54 Successfully built omero-cli-duplicate 13:13:54 Installing collected packages: omero-cli-duplicate 13:13:54 Successfully installed omero-cli-duplicate-0.4.1.dev0 13:13:54 + pip install omero-certificates 13:13:55 Collecting omero-certificates 13:13:55 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 13:13:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 13:13:55 Collecting distro==1.8.0 (from omero-certificates) 13:13:55 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 13:13:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 13:13:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 13:13:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 13:13:55 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 13:13:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 13:13:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 13:13:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 13:13:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 13:13:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 13:13:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 13:13:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 13:13:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4) 13:13:55 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 13:13:55 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 13:13:55 Installing collected packages: distro, omero-certificates 13:13:55 Successfully installed distro-1.8.0 omero-certificates-0.3.2 13:13:55 + for x in *.tar.gz 13:13:55 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 13:13:55 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 13:13:55 Installing build dependencies: started 13:13:57 Installing build dependencies: finished with status 'done' 13:13:57 Getting requirements to build wheel: started 13:13:57 Getting requirements to build wheel: finished with status 'done' 13:13:57 Preparing metadata (pyproject.toml): started 13:13:58 Preparing metadata (pyproject.toml): finished with status 'done' 13:13:58 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 13:13:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 13:13:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 13:13:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 13:13:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 13:13:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 13:13:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1) 13:13:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 13:13:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 13:13:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 13:13:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 13:13:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 13:13:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4) 13:13:58 Building wheels for collected packages: omero-dropbox 13:13:58 Building wheel for omero-dropbox (pyproject.toml): started 13:13:58 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 13:13:58 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=59ea2b9c41f3483c1fe23c5d34256b6c4672796ee1196c507eb36db860da3553 13:13:58 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 13:13:58 Successfully built omero-dropbox 13:13:58 Installing collected packages: omero-dropbox 13:13:58 Successfully installed omero-dropbox-5.7.1.dev0 13:13:58 + for x in *.tar.gz 13:13:58 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 13:13:58 Processing ./omero_marshal-0.9.1.dev0.tar.gz 13:13:58 Installing build dependencies: started 13:14:00 Installing build dependencies: finished with status 'done' 13:14:00 Getting requirements to build wheel: started 13:14:00 Getting requirements to build wheel: finished with status 'done' 13:14:00 Preparing metadata (pyproject.toml): started 13:14:01 Preparing metadata (pyproject.toml): finished with status 'done' 13:14:01 Building wheels for collected packages: omero_marshal 13:14:01 Building wheel for omero_marshal (pyproject.toml): started 13:14:01 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 13:14:01 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=711be54b72f26bb2f8f04f0f370ded36ae04b1ebfab490bb14a8a85e5eca1e51 13:14:01 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 13:14:01 Successfully built omero_marshal 13:14:01 Installing collected packages: omero_marshal 13:14:01 Successfully installed omero_marshal-0.9.1.dev0 13:14:01 + for x in *.tar.gz 13:14:01 + pip install -U omero_py-5.19.5.dev0.tar.gz 13:14:02 Processing ./omero_py-5.19.5.dev0.tar.gz 13:14:02 Installing build dependencies: started 13:14:04 Installing build dependencies: finished with status 'done' 13:14:04 Getting requirements to build wheel: started 13:14:04 Getting requirements to build wheel: finished with status 'done' 13:14:04 Preparing metadata (pyproject.toml): started 13:14:04 Preparing metadata (pyproject.toml): finished with status 'done' 13:14:04 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19) 13:14:04 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 13:14:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 13:14:04 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 13:14:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 13:14:04 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.1) 13:14:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 13:14:04 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 13:14:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 13:14:04 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 13:14:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.7) 13:14:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4) 13:14:04 Building wheels for collected packages: omero-py 13:14:04 Building wheel for omero-py (pyproject.toml): started 13:14:05 Building wheel for omero-py (pyproject.toml): finished with status 'done' 13:14:05 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782907 sha256=18c4a9ed56db7eaaf484487b15104522065083e231bc30125efbafdd2da438f4 13:14:05 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 13:14:05 Successfully built omero-py 13:14:05 Installing collected packages: omero-py 13:14:05 Attempting uninstall: omero-py 13:14:05 Found existing installation: omero-py 5.19.4 13:14:05 Uninstalling omero-py-5.19.4: 13:14:06 Successfully uninstalled omero-py-5.19.4 13:14:08 Successfully installed omero-py-5.19.5.dev0 13:14:08 + for x in *.tar.gz 13:14:08 + pip install -U omero_scripts-5.8.3.dev0.tar.gz 13:14:08 Processing ./omero_scripts-5.8.3.dev0.tar.gz 13:14:08 Installing build dependencies: started 13:14:10 Installing build dependencies: finished with status 'done' 13:14:10 Getting requirements to build wheel: started 13:14:10 Getting requirements to build wheel: finished with status 'done' 13:14:10 Preparing metadata (pyproject.toml): started 13:14:10 Preparing metadata (pyproject.toml): finished with status 'done' 13:14:10 Building wheels for collected packages: omero-scripts 13:14:10 Building wheel for omero-scripts (pyproject.toml): started 13:14:11 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 13:14:11 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116556 sha256=89818bea37e0257bbd7aa3c1216364524eafa7f5ea98e3cb029a6f73aa338ea2 13:14:11 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446 13:14:11 Successfully built omero-scripts 13:14:11 Installing collected packages: omero-scripts 13:14:11 Successfully installed omero-scripts-5.8.3.dev0 13:14:11 + for x in *.tar.gz 13:14:11 + pip install -U omero_web-5.26.1.dev0.tar.gz 13:14:11 Processing ./omero_web-5.26.1.dev0.tar.gz 13:14:12 Installing build dependencies: started 13:14:13 Installing build dependencies: finished with status 'done' 13:14:13 Getting requirements to build wheel: started 13:14:14 Getting requirements to build wheel: finished with status 'done' 13:14:14 Preparing metadata (pyproject.toml): started 13:14:14 Preparing metadata (pyproject.toml): finished with status 'done' 13:14:14 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.5.dev0) 13:14:14 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0) 13:14:14 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 13:14:14 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0) 13:14:14 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB) 13:14:14 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0) 13:14:14 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 13:14:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0) 13:14:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 13:14:14 Collecting django-csp (from omero-web==5.26.1.dev0) 13:14:14 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 13:14:14 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0) 13:14:14 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 13:14:14 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0) 13:14:14 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 13:14:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0) 13:14:14 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0) 13:14:14 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1) 13:14:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1) 13:14:14 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1) 13:14:14 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 13:14:14 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 13:14:14 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 13:14:14 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 13:14:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19) 13:14:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4) 13:14:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0) 13:14:14 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4) 13:14:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1) 13:14:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5) 13:14:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3) 13:14:15 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0) 13:14:15 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 13:14:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2) 13:14:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7) 13:14:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4) 13:14:15 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 13:14:15 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 13:14:15 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 13:14:15 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB) 13:14:15 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 13:14:15 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 13:14:15 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 13:14:15 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 13:14:15 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 13:14:15 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 13:14:15 Building wheels for collected packages: omero-web 13:14:15 Building wheel for omero-web (pyproject.toml): started 13:14:16 Building wheel for omero-web (pyproject.toml): finished with status 'done' 13:14:16 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765303 sha256=7884e5817c7d62299d294a09a2839b1483e3bba79bfb34bcdacb13ef728b14ab 13:14:16 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453 13:14:16 Successfully built omero-web 13:14:16 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 13:14:19 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 13:14:19 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:14:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 13:14:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 13:14:19 --2024-07-24 13:14:19-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:14:19 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ... 13:14:19 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 13:14:19 HTTP request sent, awaiting response... 200 OK 13:14:19 Length: 95703 (93K) [text/plain] 13:14:19 Saving to: ‘Figure_To_Pdf.py’ 13:14:19 13:14:19 0K .......... .......... .......... .......... .......... 53% 2.30M 0s 13:14:19 50K .......... .......... .......... .......... ... 100% 20.0M=0.02s 13:14:19 13:14:19 2024-07-24 13:14:19 (3.91 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703] 13:14:19 13:14:19 + chmod 755 Figure_To_Pdf.py 13:14:19 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 13:14:19 + omero config set omero.db.name OMERO-server 13:14:20 + omero config set omero.db.host pg 13:14:22 + omero config set omero.db.user postgres 13:14:23 + omero config set omero.data.dir /home/omero/omero-server-data 13:14:24 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 13:14:26 + omero config set omero.db.poolsize 25 13:14:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 13:14:28 + omero config set omero.security.trustStorePassword changeit 13:14:29 + omero config set omero.mail.config true 13:14:31 + omero config set omero.mail.from qa@openmicroscopy.org.uk 13:14:32 + omero config set omero.mail.host smtp.dundee.ac.uk 13:14:33 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 13:14:35 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 13:14:36 + omero certificates 13:14:37 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 13:14:37 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 13:14:38 + '[' false = true ']' 13:14:38 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 13:14:38 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 13:14:38 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbcommand => upgrade 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbhost => localhost 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbname => OMERO-server 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbpass => omero 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbuser => omero 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG rootpass => omero 13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 13:14:38 2024-07-24 13:14:38,343 [omego.extern] INFO Executing : omero version 13:14:39 OMERO.py version: 13:14:39 OMERO.server version: 13:14:39 5.6.3-485-ec16e0d4cd-ice36 13:14:39 5.19.5.dev0 13:14:39 2024-07-24 13:14:39,748 [omego.extern] INFO Completed [1.406 s] 13:14:39 2024-07-24 13:14:39,749 [omego.extern] DEBUG Using omero CLI from omero 13:14:39 2024-07-24 13:14:39,749 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 13:14:39 2024-07-24 13:14:39,749 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:14:39 2024-07-24 13:14:39,749 [omego.extern] INFO Executing : omero config get --show-password 13:14:41 2024-07-24 13:14:41,070 [omego.extern] INFO Completed [1.321 s] 13:14:41 2024-07-24 13:14:41,071 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:14:41 2024-07-24 13:14:41,071 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Completed [0.006 s] 13:14:41 2024-07-24 13:14:41,077 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 13:14:41 2024-07-24 13:14:41,077 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 13:14:41 13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Executing : omero config get --show-password 13:14:42 2024-07-24 13:14:42,670 [omego.extern] INFO Completed [1.593 s] 13:14:42 2024-07-24 13:14:42,670 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:14:42 2024-07-24 13:14:42,670 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 13:14:42 2024-07-24 13:14:42,682 [omego.extern] INFO Completed [0.012 s] 13:14:42 2024-07-24 13:14:42,683 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.4") at port "5432".\n' 13:14:42 2024-07-24 13:14:42,683 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:14:42 2024-07-24 13:14:42,683 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:14:42 2024-07-24 13:14:42,683 [omego.extern] INFO Executing : omero config get --show-password 13:14:44 2024-07-24 13:14:44,014 [omego.extern] INFO Completed [1.331 s] 13:14:44 2024-07-24 13:14:44,014 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:14:44 2024-07-24 13:14:44,014 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:14:44 2024-07-24 13:14:44,025 [omego.extern] INFO Completed [0.010 s] 13:14:44 2024-07-24 13:14:44,025 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 13:14:44 2024-07-24 13:14:44,025 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 13:14:44 2024-07-24 13:14:44,027 [ omego.db] INFO Database is already at OMERO5.4__0 13:14:44 + export LANG=en_US.UTF-8 13:14:44 + LANG=en_US.UTF-8 13:14:44 + export LANGUAGE=en_US:en 13:14:44 + LANGUAGE=en_US:en 13:14:44 + export LC_ALL=en_US.UTF-8 13:14:44 + LC_ALL=en_US.UTF-8 13:14:44 + BUILD_ID=DONT_KILL_ME 13:14:44 + omero admin start 13:14:52 No descriptor given. Using etc/grid/default.xml 13:14:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 13:14:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 13:14:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 13:14:59 Waiting on startup. Use CTRL-C to exit 13:15:00 + omero admin waitup 13:15:01 Waiting on startup. Use CTRL-C to exit 13:15:01 + omero admin diagnostics 13:15:02 13:15:02 ================================================================================ 13:15:02 OMERO Diagnostics (admin) 13:15:02 ================================================================================ 13:15:02 13:15:02 Commands: java -version 11.0.22 (/usr/bin/java) 13:15:02 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 13:15:02 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 13:15:02 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 13:15:02 Commands: psql --version 16.2 (/usr/bin/psql) 13:15:02 Commands: openssl version 3.0.71 (/usr/bin/openssl) 13:15:02 13:15:02 Component: OMERO.py 5.19.5.dev0 13:15:02 Component: OMERO.server 5.6.3-485-ec16e0d4cd-ice36 13:15:02 13:15:02 Server: icegridnode running 13:15:02 Server: Blitz-0 active (pid = 43650, enabled) 13:15:02 Server: Indexer-0 activating (enabled) 13:15:02 Server: OMERO.Glacier2 active (pid = 43682, enabled) 13:15:02 Server: OMERO.IceStorm active (pid = 43710, enabled) 13:15:02 Server: Processor-0 activating (enabled) 13:15:02 Server: Tables-0 activating (enabled) 13:15:02 13:15:02 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 13:15:02 Log files: Blitz-0.log 20.8 KB errors=0 warnings=1 13:15:02 Log files: DropBox.log n/a 13:15:02 Log files: FileServer.log n/a 13:15:02 Log files: Indexer-0.log 114 B 13:15:02 Log files: MonitorServer.log n/a 13:15:02 Log files: Processor-0.log 281 B 13:15:02 Log files: Tables-0.log 281 B 13:15:02 Log files: TestDropBox.log n/a 13:15:02 Log files: master.err 180 B 13:15:02 Log files: master.out 30.1 KB 13:15:02 Log files: Total size 0.05 MB 13:15:02 13:15:02 13:15:02 Environment:OMERO_HOME=(unset) 13:15:02 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:15:02 Environment:OMERO_NODE=(unset) 13:15:02 Environment:OMERO_MASTER=(unset) 13:15:02 Environment:OMERO_USERDIR=(unset) 13:15:02 Environment:OMERO_TMPDIR=(unset) 13:15:02 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:15:02 Environment:PYTHONPATH=(unset) 13:15:02 Environment:ICE_HOME=/opt/ice-3.6.5 13:15:02 Environment:LD_LIBRARY_PATH=(unset) 13:15:02 Environment:DYLD_LIBRARY_PATH=(unset) 13:15:03 13:15:03 OMERO SSL port:4064 13:15:03 OMERO TCP port:4063 13:15:03 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 13:15:03 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 13:15:03 13:15:03 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 13:15:03 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 13:15:03 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 13:15:03 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 13:15:03 13:15:03 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 13:15:03 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 13:15:03 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67 13:15:03 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197 13:15:03 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT 13:15:03 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT 13:15:03 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT 13:15:03 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT 13:15:03 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT 13:15:03 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT 13:15:03 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT 13:15:03 + deactivate 13:15:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:15:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:15:03 + export PATH 13:15:03 + unset _OLD_VIRTUAL_PATH 13:15:03 + '[' -n '' ']' 13:15:03 + '[' -n /bin/bash -o -n '' ']' 13:15:03 + hash -r 13:15:03 + '[' -n '' ']' 13:15:03 + unset VIRTUAL_ENV 13:15:03 + '[' '!' '' = nondestructive ']' 13:15:03 + unset -f deactivate 13:15:03 Finished: SUCCESS