00:47:45 Started by upstream project "Trigger" build number 168 00:47:45 originally caused by: 00:47:45 Started by timer 00:47:45 Running as SYSTEM 00:47:45 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:47:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16504472228224405254.sh 00:47:45 + source /home/settings.env 00:47:45 ++ OMERO_DB_HOST=pg 00:47:45 ++ OMERO_DB_USER=postgres 00:47:45 ++ OMERO_DB_PASS= 00:47:45 ++ OMERO_ROOT_PASS=omero 00:47:45 ++ OMERO_DATA_DIR=/OMERO 00:47:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:45 + OMERO_DB_NAME=OMERO-server 00:47:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:45 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:45 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:47:45 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:45 ++ deactivate nondestructive 00:47:45 ++ '[' -n '' ']' 00:47:45 ++ '[' -n '' ']' 00:47:45 ++ '[' -n /bin/bash -o -n '' ']' 00:47:45 ++ hash -r 00:47:45 ++ '[' -n '' ']' 00:47:45 ++ unset VIRTUAL_ENV 00:47:45 ++ '[' '!' nondestructive = nondestructive ']' 00:47:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:45 ++ export VIRTUAL_ENV 00:47:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:45 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:45 ++ export PATH 00:47:45 ++ '[' -n '' ']' 00:47:45 ++ '[' -z '' ']' 00:47:45 ++ _OLD_VIRTUAL_PS1= 00:47:45 ++ PS1='(.venv3) ' 00:47:45 ++ export PS1 00:47:45 ++ '[' -n /bin/bash -o -n '' ']' 00:47:45 ++ hash -r 00:47:45 + omero admin stop 00:48:03 Waiting on shutdown. Use CTRL-C to exit 00:48:03 .+ sleep 5 00:48:18 + deactivate 00:48:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:48:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:18 + export PATH 00:48:18 + unset _OLD_VIRTUAL_PATH 00:48:18 + '[' -n '' ']' 00:48:18 + '[' -n /bin/bash -o -n '' ']' 00:48:18 + hash -r 00:48:18 + '[' -n '' ']' 00:48:18 + unset VIRTUAL_ENV 00:48:18 + '[' '!' '' = nondestructive ']' 00:48:18 + unset -f deactivate 00:48:18 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:48:22 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:48:26 + '[' false = true ']' 00:48:26 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:48:26 Skipping PURGE_DATA:CleanDbAndRepo 00:48:26 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:48:31 Copied 1 artifact from "OMERO-build" build number 141 00:48:31 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 139 00:48:31 Copied 2 artifacts from "OMERO-build-build" build number 145 00:48:31 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4659284129301252385.sh 00:48:31 + source /home/settings.env 00:48:31 ++ OMERO_DB_HOST=pg 00:48:31 ++ OMERO_DB_USER=postgres 00:48:31 ++ OMERO_DB_PASS= 00:48:31 ++ OMERO_ROOT_PASS=omero 00:48:31 ++ OMERO_DATA_DIR=/OMERO 00:48:31 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:48:31 + OMERO_DB_NAME=OMERO-server 00:48:31 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:48:31 + mkdir -p /home/omero/omero-server-data 00:48:31 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:48:31 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:31 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:31 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:31 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:31 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:31 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:31 ++ ls OMERO.server-5.6.3-496-249b767d5c-ice36.zip 00:48:31 + ZIP=OMERO.server-5.6.3-496-249b767d5c-ice36.zip 00:48:31 + '[' '!' -z '' ']' 00:48:31 + DIST=OMERO.server-5.6.3-496-249b767d5c-ice36 00:48:31 + unzip OMERO.server-5.6.3-496-249b767d5c-ice36.zip 00:48:31 Archive: OMERO.server-5.6.3-496-249b767d5c-ice36.zip 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/blitz/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/grid/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/profiles/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/error/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/grid/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/luts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/luts/janelia/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/luts/ncsa_paledit/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/luts/wcif/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/analysis_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/annotation_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/export_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/figure_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/import_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/scripts/omero/util_scripts/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/server/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/share/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/share/licenses/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/misc/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__1/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__10/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__11/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__2/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__3/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__4/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__5/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__6/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__7/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__8/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3A__9/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3__4/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3__5/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3__6/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO3__7/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4.1__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4.2__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4.2__0/t/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4.3__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4.4__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO4__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.0__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.1__1/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.2__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__1/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__2/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__3/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/ 00:48:31 creating: OMERO.server-5.6.3-496-249b767d5c-ice36/var/ 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/LICENSE.txt 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/backup.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/blitz/mail-senders.example 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/blitz/mail-server.example 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/build.properties 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/env.bat 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/env.sh 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/hibernate.properties 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/ice.config 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/logback-cli.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/logback-indexing-cli.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/logback-indexing.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/logback.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/mime.types 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/node1.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/node2.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/omero.properties 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/profiles/psql 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/rollover.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/Windows.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/error/maintainance.html 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/grid/README 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/grid/default.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/grid/templates.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/grid/windefault.xml 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/ice.config 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/internal.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/master.cfg 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/templates/robot.template 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/etc/testdropbox.config 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/history.rst 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/OMEZarrReader.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/activation.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aggdesigner-algorithm.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aircompressor.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/annotations.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/antlr.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aopalliance.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/avatica-core.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/avatica-metrics.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aws-java-sdk-core.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aws-java-sdk-kms.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/aws-java-sdk-s3.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/base.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-all.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-anim.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-awt-util.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-bridge.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-codec.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-constants.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-css.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-dom.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-ext.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-extension.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-gui-util.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-gvt.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-i18n.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-parser.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-rasterizer-ext.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-rasterizer.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-script.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-slideshow.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-squiggle-ext.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-squiggle.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-svg-dom.jar 00:48:31 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/lib/client/batik-svgbrowser.jar 00:48:31 inflating: 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OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/schema.sql 00:48:34 inflating: OMERO.server-5.6.3-496-249b767d5c-ice36/sql/psql/OMERO5.4__0/views.sql 00:48:34 + rm -f OMERO.server-5.6.3-496-249b767d5c-ice36.zip 00:48:34 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-496-249b767d5c-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:48:34 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:48:34 ++ deactivate nondestructive 00:48:34 ++ '[' -n '' ']' 00:48:34 ++ '[' -n '' ']' 00:48:34 ++ '[' -n /bin/bash -o -n '' ']' 00:48:34 ++ hash -r 00:48:34 ++ '[' -n '' ']' 00:48:34 ++ unset VIRTUAL_ENV 00:48:34 ++ '[' '!' nondestructive = nondestructive ']' 00:48:34 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:48:34 ++ export VIRTUAL_ENV 00:48:34 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:34 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:34 ++ export PATH 00:48:34 ++ '[' -n '' ']' 00:48:34 ++ '[' -z '' ']' 00:48:34 ++ _OLD_VIRTUAL_PS1= 00:48:34 ++ PS1='(.venv3) ' 00:48:34 ++ export PS1 00:48:34 ++ '[' -n /bin/bash -o -n '' ']' 00:48:34 ++ hash -r 00:48:34 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:48:34 Collecting zeroc-ice==3.6.5 00:48:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:48:36 Installing collected packages: zeroc-ice 00:48:37 Successfully installed zeroc-ice-3.6.5 00:48:37 + pip install -U pip future 00:48:38 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:48:38 Collecting pip 00:48:38 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 00:48:38 Collecting future 00:48:38 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:48:38 Installing collected packages: pip, future 00:48:38 Attempting uninstall: pip 00:48:38 Found existing installation: pip 21.2.3 00:48:39 Uninstalling pip-21.2.3: 00:48:39 Successfully uninstalled pip-21.2.3 00:48:40 Successfully installed future-1.0.0 pip-24.2 00:48:40 + pip install markdown 00:48:41 Collecting markdown 00:48:41 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:48:41 Collecting importlib-metadata>=4.4 (from markdown) 00:48:41 Using cached importlib_metadata-8.2.0-py3-none-any.whl.metadata (4.7 kB) 00:48:41 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:48:41 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 00:48:41 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:48:41 Using cached importlib_metadata-8.2.0-py3-none-any.whl (25 kB) 00:48:41 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 00:48:41 Installing collected packages: zipp, importlib-metadata, markdown 00:48:41 Successfully installed importlib-metadata-8.2.0 markdown-3.6 zipp-3.19.2 00:48:41 + pip install reportlab 00:48:42 Collecting reportlab 00:48:42 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 00:48:43 Collecting pillow>=9.0.0 (from reportlab) 00:48:43 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 00:48:43 Collecting chardet (from reportlab) 00:48:43 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:48:43 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 00:48:43 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:48:43 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:48:43 Installing collected packages: pillow, chardet, reportlab 00:48:45 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 00:48:45 + pip install omego 00:48:46 Collecting omego 00:48:46 Using cached omego-0.7.0-py3-none-any.whl 00:48:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:48:46 Collecting yaclifw>=0.1.1 (from omego) 00:48:46 Using cached yaclifw-0.2.0-py3-none-any.whl 00:48:47 Collecting six (from yaclifw>=0.1.1->omego) 00:48:47 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:48:47 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:48:47 Installing collected packages: six, yaclifw, omego 00:48:47 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:48:47 + pip install tables 00:48:47 Collecting tables 00:48:47 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:48:48 Collecting numpy>=1.19.0 (from tables) 00:48:48 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:48:48 Collecting numexpr>=2.6.2 (from tables) 00:48:48 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 00:48:48 Collecting packaging (from tables) 00:48:48 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:48:48 Collecting py-cpuinfo (from tables) 00:48:48 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:48:48 Collecting blosc2>=2.3.0 (from tables) 00:48:48 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:48:48 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:48:48 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:48:49 Collecting msgpack (from blosc2>=2.3.0->tables) 00:48:49 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:48:49 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:48:49 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:48:49 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 00:48:49 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 00:48:49 Using cached packaging-24.1-py3-none-any.whl (53 kB) 00:48:49 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:48:49 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:48:49 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:48:49 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:48:53 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.1 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 00:48:53 + pip install jinja2 00:48:54 Collecting jinja2 00:48:54 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:48:54 Collecting MarkupSafe>=2.0 (from jinja2) 00:48:54 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:48:54 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:48:54 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:48:54 Installing collected packages: MarkupSafe, jinja2 00:48:54 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 00:48:54 + pip install omero-py 00:48:55 Collecting omero-py 00:48:55 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 00:48:55 Collecting urllib3<2 (from omero-py) 00:48:55 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 00:48:55 Collecting appdirs (from omero-py) 00:48:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:48:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:48:55 Collecting numpy<2 (from omero-py) 00:48:55 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:48:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 00:48:55 Collecting PyYAML (from omero-py) 00:48:55 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:48:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:48:55 Collecting requests (from omero-py) 00:48:55 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:48:55 Collecting portalocker (from omero-py) 00:48:55 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 00:48:55 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:48:55 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:48:56 Collecting idna<4,>=2.5 (from requests->omero-py) 00:48:56 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:48:56 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:48:56 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 00:48:56 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 00:48:56 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:48:56 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 00:48:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:48:56 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 00:48:56 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 00:48:56 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:48:56 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 00:48:56 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:48:56 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:48:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:48:56 Attempting uninstall: numpy 00:48:56 Found existing installation: numpy 2.0.1 00:48:56 Uninstalling numpy-2.0.1: 00:48:57 Successfully uninstalled numpy-2.0.1 00:49:01 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19 00:49:01 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:49:02 Collecting omero-metadata 00:49:02 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-e3yc0qjp/omero-metadata_d7d7c16dfd0c489bace7605f8a4a6848 00:49:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-e3yc0qjp/omero-metadata_d7d7c16dfd0c489bace7605f8a4a6848 00:49:03 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 92bae628f716060982d69a1cf17da47be18fb4b8 00:49:03 Installing build dependencies: started 00:49:05 Installing build dependencies: finished with status 'done' 00:49:05 Getting requirements to build wheel: started 00:49:05 Getting requirements to build wheel: finished with status 'done' 00:49:05 Preparing metadata (pyproject.toml): started 00:49:05 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 00:49:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 00:49:05 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 00:49:06 Collecting pandas (from omero-metadata) 00:49:06 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:49:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 00:49:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:49:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:49:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:49:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 00:49:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:49:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:49:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 00:49:06 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:49:06 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:49:06 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:49:06 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:49:06 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:49:06 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:49:06 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:49:06 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:49:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:49:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 00:49:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4) 00:49:06 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:49:06 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:49:06 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:49:06 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:49:06 Building wheels for collected packages: omero-metadata 00:49:06 Building wheel for omero-metadata (pyproject.toml): started 00:49:06 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:49:06 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=5687a76a383a05ff1d2d0885f10e6e74e2275d8e0a0095e874f15748c68d41a9 00:49:06 Stored in directory: /tmp/pip-ephem-wheel-cache-_bqaqrjr/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:49:06 Successfully built omero-metadata 00:49:07 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:49:12 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:49:12 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:49:13 Collecting omero-cli-render 00:49:13 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-y2m8im1y/omero-cli-render_cacca7e27bf545b194c40dd3e9d308fa 00:49:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-y2m8im1y/omero-cli-render_cacca7e27bf545b194c40dd3e9d308fa 00:49:13 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:14 Switched to a new branch 'merge_ci' 00:49:14 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:14 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 65dbc7a36f75c86e4e50fe203699ae006a63d705 00:49:14 Installing build dependencies: started 00:49:16 Installing build dependencies: finished with status 'done' 00:49:16 Getting requirements to build wheel: started 00:49:16 Getting requirements to build wheel: finished with status 'done' 00:49:16 Preparing metadata (pyproject.toml): started 00:49:16 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 00:49:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 00:49:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 00:49:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:49:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:49:16 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:49:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 00:49:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:49:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:49:16 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 00:49:16 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:49:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 00:49:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4) 00:49:16 Building wheels for collected packages: omero-cli-render 00:49:16 Building wheel for omero-cli-render (pyproject.toml): started 00:49:16 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:49:16 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18032 sha256=7b815b69aeb08c55ec838f25a5d34a65cfe9952c2cb3ead5c3cdd793dfb2fc2b 00:49:16 Stored in directory: /tmp/pip-ephem-wheel-cache-5tczdx21/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:49:16 Successfully built omero-cli-render 00:49:16 Installing collected packages: omero-cli-render 00:49:17 Successfully installed omero-cli-render-0.8.1.dev0 00:49:17 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:49:17 Collecting omero-cli-duplicate 00:49:17 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-o9x4224n/omero-cli-duplicate_6410bec25dc942578e7a096a1c4d817f 00:49:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-o9x4224n/omero-cli-duplicate_6410bec25dc942578e7a096a1c4d817f 00:49:18 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:18 Switched to a new branch 'merge_ci' 00:49:18 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:18 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 8d6af009c09d25e08ed76250418089ea1997a5e5 00:49:18 Installing build dependencies: started 00:49:20 Installing build dependencies: finished with status 'done' 00:49:20 Getting requirements to build wheel: started 00:49:21 Getting requirements to build wheel: finished with status 'done' 00:49:21 Preparing metadata (pyproject.toml): started 00:49:21 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:21 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 00:49:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 00:49:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:49:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:49:21 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:49:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 00:49:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 00:49:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:49:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:49:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 00:49:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:49:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 00:49:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4) 00:49:21 Building wheels for collected packages: omero-cli-duplicate 00:49:21 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:49:21 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:49:21 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11444 sha256=6c466b6f4db11d671ad33e17c1b05dd1fa0963f44a1773afc2cc75aa206cc71d 00:49:21 Stored in directory: /tmp/pip-ephem-wheel-cache-_v_3dt9i/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:49:21 Successfully built omero-cli-duplicate 00:49:21 Installing collected packages: omero-cli-duplicate 00:49:21 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:49:22 + pip install omero-certificates 00:49:22 Collecting omero-certificates 00:49:22 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:49:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 00:49:22 Collecting distro==1.8.0 (from omero-certificates) 00:49:22 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:49:22 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 00:49:22 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:49:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:49:22 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:49:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 00:49:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 00:49:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:49:22 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:49:22 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 00:49:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:49:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 00:49:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4) 00:49:22 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:49:22 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:49:22 Installing collected packages: distro, omero-certificates 00:49:22 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:49:22 + for x in *.tar.gz 00:49:22 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:49:23 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:49:23 Installing build dependencies: started 00:49:25 Installing build dependencies: finished with status 'done' 00:49:25 Getting requirements to build wheel: started 00:49:25 Getting requirements to build wheel: finished with status 'done' 00:49:25 Preparing metadata (pyproject.toml): started 00:49:26 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:26 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 00:49:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 00:49:26 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:49:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:49:26 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:49:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 00:49:26 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 00:49:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:49:26 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:49:26 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 00:49:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 00:49:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7) 00:49:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4) 00:49:26 Building wheels for collected packages: omero-dropbox 00:49:26 Building wheel for omero-dropbox (pyproject.toml): started 00:49:26 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:49:26 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=0ffcc828fced8e9f87f7658317ba8cc9b943215c513837882f9118037981117b 00:49:26 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:49:26 Successfully built omero-dropbox 00:49:26 Installing collected packages: omero-dropbox 00:49:26 Successfully installed omero-dropbox-5.7.1.dev0 00:49:26 + for x in *.tar.gz 00:49:26 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:49:27 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:49:27 Installing build dependencies: started 00:49:29 Installing build dependencies: finished with status 'done' 00:49:29 Getting requirements to build wheel: started 00:49:29 Getting requirements to build wheel: finished with status 'done' 00:49:29 Preparing metadata (pyproject.toml): started 00:49:29 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:29 Building wheels for collected packages: omero_marshal 00:49:29 Building wheel for omero_marshal (pyproject.toml): started 00:49:30 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:49:30 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88029 sha256=0f0e95123f8e6bf24a39d32026293d3750a40d96266566a0614a3e70175e24d2 00:49:30 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:49:30 Successfully built omero_marshal 00:49:30 Installing collected packages: omero_marshal 00:49:30 Successfully installed omero_marshal-0.9.1.dev0 00:49:30 + for x in *.tar.gz 00:49:30 + pip install -U omero_py-5.19.5.dev0.tar.gz 00:49:30 Processing ./omero_py-5.19.5.dev0.tar.gz 00:49:31 Installing build dependencies: started 00:49:33 Installing build dependencies: finished with status 'done' 00:49:33 Getting requirements to build wheel: started 00:49:33 Getting requirements to build wheel: finished with status 'done' 00:49:33 Preparing metadata (pyproject.toml): started 00:49:33 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:33 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19) 00:49:33 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 00:49:33 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 00:49:33 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 00:49:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 00:49:33 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2) 00:49:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 00:49:33 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 00:49:33 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 00:49:33 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 00:49:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.7) 00:49:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4) 00:49:33 Building wheels for collected packages: omero-py 00:49:33 Building wheel for omero-py (pyproject.toml): started 00:49:34 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:49:34 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=30cbcf42b48c47ee5b02968d3ac9f66d0149779abaf04460acd5554afc599d69 00:49:34 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 00:49:34 Successfully built omero-py 00:49:35 Installing collected packages: omero-py 00:49:35 Attempting uninstall: omero-py 00:49:35 Found existing installation: omero-py 5.19.4 00:49:35 Uninstalling omero-py-5.19.4: 00:49:35 Successfully uninstalled omero-py-5.19.4 00:49:37 Successfully installed omero-py-5.19.5.dev0 00:49:37 + for x in *.tar.gz 00:49:37 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 00:49:38 Processing ./omero_scripts-5.8.4.dev0.tar.gz 00:49:38 Installing build dependencies: started 00:49:40 Installing build dependencies: finished with status 'done' 00:49:40 Getting requirements to build wheel: started 00:49:40 Getting requirements to build wheel: finished with status 'done' 00:49:40 Preparing metadata (pyproject.toml): started 00:49:40 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:40 Building wheels for collected packages: omero-scripts 00:49:40 Building wheel for omero-scripts (pyproject.toml): started 00:49:40 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:49:40 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116560 sha256=1b7ce81b97ee0bf3913589f55e0636d4a98be029cf0de2e420313326636cf6be 00:49:40 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 00:49:40 Successfully built omero-scripts 00:49:40 Installing collected packages: omero-scripts 00:49:41 Successfully installed omero-scripts-5.8.4.dev0 00:49:41 + for x in *.tar.gz 00:49:41 + pip install -U omero_web-5.27.1.dev0.tar.gz 00:49:41 Processing ./omero_web-5.27.1.dev0.tar.gz 00:49:41 Installing build dependencies: started 00:49:43 Installing build dependencies: finished with status 'done' 00:49:43 Getting requirements to build wheel: started 00:49:44 Getting requirements to build wheel: finished with status 'done' 00:49:44 Preparing metadata (pyproject.toml): started 00:49:44 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:44 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (5.19.5.dev0) 00:49:44 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.1.dev0) 00:49:44 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:49:44 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.1.dev0) 00:49:44 Using cached Django-4.2.15-py3-none-any.whl.metadata (4.1 kB) 00:49:44 Collecting django-pipeline==2.1.0 (from omero-web==5.27.1.dev0) 00:49:44 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:49:44 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.1.dev0) 00:49:44 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:49:45 Collecting django-csp (from omero-web==5.27.1.dev0) 00:49:45 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:49:45 Collecting whitenoise>=5.3.0 (from omero-web==5.27.1.dev0) 00:49:45 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 00:49:45 Collecting gunicorn>=19.3 (from omero-web==5.27.1.dev0) 00:49:45 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB) 00:49:45 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (0.9.1.dev0) 00:49:45 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (10.4.0) 00:49:45 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2024.1) 00:49:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2.10.1) 00:49:45 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (24.1) 00:49:45 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 00:49:45 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:49:45 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 00:49:45 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 00:49:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.19) 00:49:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.4.4) 00:49:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.0.0) 00:49:45 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.4) 00:49:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (6.0.2) 00:49:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.6.5) 00:49:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (2.32.3) 00:49:45 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 00:49:45 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:49:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.3.2) 00:49:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.7) 00:49:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (2024.7.4) 00:49:45 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:49:45 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:49:45 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:49:45 Using cached Django-4.2.15-py3-none-any.whl (8.0 MB) 00:49:45 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB) 00:49:45 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 00:49:45 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:49:45 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:49:45 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 00:49:45 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:49:46 Building wheels for collected packages: omero-web 00:49:46 Building wheel for omero-web (pyproject.toml): started 00:49:47 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:49:47 Created wheel for omero-web: filename=omero_web-5.27.1.dev0-py3-none-any.whl size=2766522 sha256=ad0d1a499eb34f06a032ff52e8cc20dcadc392d2a2fe1a4c2d2eca5a7a183c41 00:49:47 Stored in directory: /home/omero/.cache/pip/wheels/95/a2/6f/d45832b3b9dfb05411e1514f5c4953422c04f1662dacdfe59a 00:49:47 Successfully built omero-web 00:49:47 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:49:50 Successfully installed Django-4.2.15 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.27.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 00:49:50 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:49:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:49:51 --2024-08-09 00:49:51-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:49:51 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ... 00:49:51 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 00:49:51 HTTP request sent, awaiting response... 200 OK 00:49:51 Length: 95703 (93K) [text/plain] 00:49:51 Saving to: ‘Figure_To_Pdf.py’ 00:49:51 00:49:51 0K .......... .......... .......... .......... .......... 53% 2.32M 0s 00:49:51 50K .......... .......... .......... .......... ... 100% 15.8M=0.02s 00:49:51 00:49:51 2024-08-09 00:49:51 (3.85 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703] 00:49:51 00:49:51 + chmod 755 Figure_To_Pdf.py 00:49:51 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:49:51 + omero config set omero.db.name OMERO-server 00:49:53 + omero config set omero.db.host pg 00:49:55 + omero config set omero.db.user postgres 00:49:56 + omero config set omero.data.dir /home/omero/omero-server-data 00:49:58 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:49:59 + omero config set omero.db.poolsize 25 00:50:01 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:50:02 + omero config set omero.security.trustStorePassword changeit 00:50:04 + omero config set omero.mail.config true 00:50:06 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:50:07 + omero config set omero.mail.host smtp.dundee.ac.uk 00:50:09 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:50:10 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:50:12 + omero certificates 00:50:13 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:50:13 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:50:14 + '[' false = true ']' 00:50:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:50:14 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:50:14 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG dbcommand => upgrade 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG dbhost => localhost 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG dbname => OMERO-server 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG dbpass => omero 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG dbuser => omero 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG rootpass => omero 00:50:14 2024-08-09 00:50:14,234 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:50:14 2024-08-09 00:50:14,234 [omego.extern] INFO Executing : omero version 00:50:15 OMERO.py version: 00:50:15 OMERO.server version: 00:50:15 5.6.3-496-249b767d5c-ice36 00:50:15 5.19.5.dev0 00:50:15 2024-08-09 00:50:15,738 [omego.extern] INFO Completed [1.504 s] 00:50:15 2024-08-09 00:50:15,738 [omego.extern] DEBUG Using omero CLI from omero 00:50:15 2024-08-09 00:50:15,738 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:50:15 2024-08-09 00:50:15,739 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:15 2024-08-09 00:50:15,739 [omego.extern] INFO Executing : omero config get --show-password 00:50:17 2024-08-09 00:50:17,244 [omego.extern] INFO Completed [1.505 s] 00:50:17 2024-08-09 00:50:17,244 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:17 2024-08-09 00:50:17,245 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:50:17 2024-08-09 00:50:17,396 [omego.extern] INFO Completed [0.151 s] 00:50:17 2024-08-09 00:50:17,396 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:50:17 2024-08-09 00:50:17,397 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:50:17 00:50:17 2024-08-09 00:50:17,397 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:17 2024-08-09 00:50:17,397 [omego.extern] INFO Executing : omero config get --show-password 00:50:18 2024-08-09 00:50:18,953 [omego.extern] INFO Completed [1.557 s] 00:50:18 2024-08-09 00:50:18,954 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:18 2024-08-09 00:50:18,954 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:50:19 2024-08-09 00:50:19,072 [omego.extern] INFO Completed [0.118 s] 00:50:19 2024-08-09 00:50:19,073 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.3") at port "5432".\n' 00:50:19 2024-08-09 00:50:19,073 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:19 2024-08-09 00:50:19,073 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:50:19 2024-08-09 00:50:19,073 [omego.extern] INFO Executing : omero config get --show-password 00:50:20 2024-08-09 00:50:20,622 [omego.extern] INFO Completed [1.549 s] 00:50:20 2024-08-09 00:50:20,622 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:50:20 2024-08-09 00:50:20,622 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:50:20 2024-08-09 00:50:20,687 [omego.extern] INFO Completed [0.064 s] 00:50:20 2024-08-09 00:50:20,687 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:50:20 2024-08-09 00:50:20,687 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:50:20 2024-08-09 00:50:20,689 [ omego.db] INFO Database is already at OMERO5.4__0 00:50:20 + export LANG=en_US.UTF-8 00:50:20 + LANG=en_US.UTF-8 00:50:20 + export LANGUAGE=en_US:en 00:50:20 + LANGUAGE=en_US:en 00:50:20 + export LC_ALL=en_US.UTF-8 00:50:20 + LC_ALL=en_US.UTF-8 00:50:20 + BUILD_ID=DONT_KILL_ME 00:50:20 + omero admin start 00:50:31 No descriptor given. Using etc/grid/default.xml 00:50:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:50:44 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:50:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:50:44 Waiting on startup. Use CTRL-C to exit 00:50:44 + omero admin waitup 00:50:45 Waiting on startup. Use CTRL-C to exit 00:50:46 + omero admin diagnostics 00:50:47 00:50:47 ================================================================================ 00:50:47 OMERO Diagnostics (admin) 00:50:47 ================================================================================ 00:50:47 00:50:47 Commands: java -version 11.0.22 (/usr/bin/java) 00:50:47 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:50:47 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:50:47 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:50:47 Commands: psql --version 16.2 (/usr/bin/psql) 00:50:47 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:50:47 00:50:47 Component: OMERO.py 5.19.5.dev0 00:50:47 Component: OMERO.server 5.6.3-496-249b767d5c-ice36 00:50:47 00:50:47 Server: icegridnode running 00:50:47 Server: Blitz-0 active (pid = 30080, enabled) 00:50:47 Server: Indexer-0 activating (enabled) 00:50:47 Server: OMERO.Glacier2 active (pid = 30107, enabled) 00:50:47 Server: OMERO.IceStorm active (pid = 30132, enabled) 00:50:48 Server: Processor-0 activating (enabled) 00:50:48 Server: Tables-0 activating (enabled) 00:50:48 00:50:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:50:48 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 00:50:48 Log files: DropBox.log n/a 00:50:48 Log files: FileServer.log n/a 00:50:48 Log files: Indexer-0.log 2.0 KB 00:50:48 Log files: MonitorServer.log n/a 00:50:48 Log files: Processor-0.log 592 B 00:50:48 Log files: Tables-0.log 841 B 00:50:48 Log files: TestDropBox.log n/a 00:50:48 Log files: master.err 180 B 00:50:48 Log files: master.out 30.1 KB 00:50:48 Log files: Total size 0.06 MB 00:50:48 00:50:48 00:50:48 Environment:OMERO_HOME=(unset) 00:50:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:50:48 Environment:OMERO_NODE=(unset) 00:50:48 Environment:OMERO_MASTER=(unset) 00:50:48 Environment:OMERO_USERDIR=(unset) 00:50:48 Environment:OMERO_TMPDIR=(unset) 00:50:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:50:48 Environment:PYTHONPATH=(unset) 00:50:48 Environment:ICE_HOME=/opt/ice-3.6.5 00:50:48 Environment:LD_LIBRARY_PATH=(unset) 00:50:48 Environment:DYLD_LIBRARY_PATH=(unset) 00:50:48 00:50:48 OMERO SSL port:4064 00:50:48 OMERO TCP port:4063 00:50:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:50:48 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:50:48 00:50:48 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:48 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:48 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:48 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:50:48 00:50:48 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 9 August 2024 c3e9c7a17a4d9a11bfe9d49d49bc38f147697211 00:50:48 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 9 August 2024 c3e9c7a17a4d9a11bfe9d49d49bc38f147697211 00:50:48 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 9 August 2024 c3e9c7a17a4d9a11bfe9d49d49bc38f147697211 00:50:48 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 9 August 2024 eb6c2c60cd65c80f63eeced9bd78c091ca8be953 00:50:48 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 00:50:48 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 00:50:48 Jar: lib/server/omero-gateway.jar jar 5.9.3-SNAPSHOT 00:50:48 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 00:50:48 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 00:50:48 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 00:50:48 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 00:50:48 + deactivate 00:50:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:50:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:50:48 + export PATH 00:50:48 + unset _OLD_VIRTUAL_PATH 00:50:48 + '[' -n '' ']' 00:50:48 + '[' -n /bin/bash -o -n '' ']' 00:50:48 + hash -r 00:50:48 + '[' -n '' ']' 00:50:48 + unset VIRTUAL_ENV 00:50:48 + '[' '!' '' = nondestructive ']' 00:50:48 + unset -f deactivate 00:50:48 Finished: SUCCESS