17:37:52 Started by upstream project "Trigger" build number 187 17:37:52 originally caused by: 17:37:52 Started by user devspace 17:37:52 Running as SYSTEM 17:37:52 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 17:37:52 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7552050524127236202.sh 17:37:52 + source /home/settings.env 17:37:52 ++ OMERO_DB_HOST=pg 17:37:52 ++ OMERO_DB_USER=postgres 17:37:52 ++ OMERO_DB_PASS= 17:37:52 ++ OMERO_ROOT_PASS=omero 17:37:52 ++ OMERO_DATA_DIR=/OMERO 17:37:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 17:37:52 + OMERO_DB_NAME=OMERO-server 17:37:52 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 17:37:52 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 17:37:52 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 17:37:52 + OMERO_DATA_DIR=/home/omero/omero-server-data 17:37:52 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 17:37:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 17:37:52 ++ deactivate nondestructive 17:37:52 ++ '[' -n '' ']' 17:37:52 ++ '[' -n '' ']' 17:37:52 ++ '[' -n /bin/bash -o -n '' ']' 17:37:52 ++ hash -r 17:37:52 ++ '[' -n '' ']' 17:37:52 ++ unset VIRTUAL_ENV 17:37:52 ++ '[' '!' nondestructive = nondestructive ']' 17:37:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 17:37:52 ++ export VIRTUAL_ENV 17:37:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:37:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:37:52 ++ export PATH 17:37:52 ++ '[' -n '' ']' 17:37:52 ++ '[' -z '' ']' 17:37:52 ++ _OLD_VIRTUAL_PS1= 17:37:52 ++ PS1='(.venv3) ' 17:37:52 ++ export PS1 17:37:52 ++ '[' -n /bin/bash -o -n '' ']' 17:37:52 ++ hash -r 17:37:52 + omero admin stop 17:37:53 Waiting on shutdown. Use CTRL-C to exit 17:37:53 .+ sleep 5 17:38:08 + deactivate 17:38:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 17:38:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:38:08 + export PATH 17:38:08 + unset _OLD_VIRTUAL_PATH 17:38:08 + '[' -n '' ']' 17:38:08 + '[' -n /bin/bash -o -n '' ']' 17:38:08 + hash -r 17:38:08 + '[' -n '' ']' 17:38:08 + unset VIRTUAL_ENV 17:38:08 + '[' '!' '' = nondestructive ']' 17:38:08 + unset -f deactivate 17:38:08 + rm -rf /home/omero/workspace/OMERO-server/.venv3 17:38:09 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 17:38:12 + '[' false = true ']' 17:38:12 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 17:38:12 Skipping PURGE_DATA:CleanDbAndRepo 17:38:12 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 17:38:15 Copied 1 artifact from "OMERO-build" build number 158 17:38:15 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 156 17:38:16 Copied 2 artifacts from "OMERO-build-build" build number 163 17:38:16 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10219727383935112848.sh 17:38:16 + source /home/settings.env 17:38:16 ++ OMERO_DB_HOST=pg 17:38:16 ++ OMERO_DB_USER=postgres 17:38:16 ++ OMERO_DB_PASS= 17:38:16 ++ OMERO_ROOT_PASS=omero 17:38:16 ++ OMERO_DATA_DIR=/OMERO 17:38:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 17:38:16 + OMERO_DB_NAME=OMERO-server 17:38:16 + OMERO_DATA_DIR=/home/omero/omero-server-data 17:38:16 + mkdir -p /home/omero/omero-server-data 17:38:16 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 17:38:16 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 17:38:16 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 17:38:16 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 17:38:16 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 17:38:16 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 17:38:16 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 17:38:16 ++ ls OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:38:16 + ZIP=OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:38:16 + '[' '!' -z '' ']' 17:38:16 + DIST=OMERO.server-5.6.3-500-01e94f4734-ice36 17:38:16 + unzip OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:38:16 Archive: OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/blitz/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/grid/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/profiles/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/error/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/grid/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/luts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/luts/janelia/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/luts/ncsa_paledit/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/luts/wcif/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/analysis_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/annotation_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/export_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/figure_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/import_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/scripts/omero/util_scripts/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/server/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/share/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/share/licenses/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/misc/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__1/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__10/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__11/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__2/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__3/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__4/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__5/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__6/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__7/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__8/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3A__9/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3__4/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3__5/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3__6/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO3__7/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4.1__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4.2__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4.2__0/t/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4.3__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4.4__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO4__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.0__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.1__1/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.2__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__1/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__2/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__3/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/ 17:38:16 creating: OMERO.server-5.6.3-500-01e94f4734-ice36/var/ 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/LICENSE.txt 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/backup.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/blitz/mail-senders.example 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/blitz/mail-server.example 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/build.properties 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/env.bat 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/env.sh 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/hibernate.properties 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/ice.config 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/logback-cli.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/logback-indexing-cli.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/logback-indexing.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/logback.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/mime.types 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/node1.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/node2.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/omero.properties 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/profiles/psql 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/rollover.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/Windows.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/error/maintainance.html 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/grid/README 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/grid/default.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/grid/templates.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/grid/windefault.xml 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/ice.config 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/internal.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/master.cfg 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/templates/robot.template 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/etc/testdropbox.config 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/history.rst 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/OMEZarrReader.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/activation.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aggdesigner-algorithm.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aircompressor.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/annotations.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/antlr.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aopalliance.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/avatica-core.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/avatica-metrics.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aws-java-sdk-core.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aws-java-sdk-kms.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/aws-java-sdk-s3.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/base.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-all.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-anim.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-awt-util.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-bridge.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-codec.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-constants.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-css.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-dom.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-ext.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-extension.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-gui-util.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-gvt.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-i18n.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-parser.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-rasterizer-ext.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-rasterizer.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-script.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-slideshow.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-squiggle-ext.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-squiggle.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-svg-dom.jar 17:38:16 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/lib/client/batik-svgbrowser.jar 17:38:16 inflating: 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OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/psql-header.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/schema.sql 17:38:18 inflating: OMERO.server-5.6.3-500-01e94f4734-ice36/sql/psql/OMERO5.4__0/views.sql 17:38:18 + rm -f OMERO.server-5.6.3-500-01e94f4734-ice36.zip 17:38:18 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-500-01e94f4734-ice36 /home/omero/workspace/OMERO-server/OMERO.server 17:38:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 17:38:18 ++ deactivate nondestructive 17:38:18 ++ '[' -n '' ']' 17:38:18 ++ '[' -n '' ']' 17:38:18 ++ '[' -n /bin/bash -o -n '' ']' 17:38:18 ++ hash -r 17:38:18 ++ '[' -n '' ']' 17:38:18 ++ unset VIRTUAL_ENV 17:38:18 ++ '[' '!' nondestructive = nondestructive ']' 17:38:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 17:38:18 ++ export VIRTUAL_ENV 17:38:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:38:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:38:18 ++ export PATH 17:38:18 ++ '[' -n '' ']' 17:38:18 ++ '[' -z '' ']' 17:38:18 ++ _OLD_VIRTUAL_PS1= 17:38:18 ++ PS1='(.venv3) ' 17:38:18 ++ export PS1 17:38:18 ++ '[' -n /bin/bash -o -n '' ']' 17:38:18 ++ hash -r 17:38:18 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 17:38:19 Collecting zeroc-ice==3.6.5 17:38:19 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 17:38:21 Installing collected packages: zeroc-ice 17:38:22 Successfully installed zeroc-ice-3.6.5 17:38:22 + pip install -U pip future 17:38:22 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 17:38:22 Collecting pip 17:38:22 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 17:38:22 Collecting future 17:38:22 Using cached future-1.0.0-py3-none-any.whl (491 kB) 17:38:23 Installing collected packages: pip, future 17:38:23 Attempting uninstall: pip 17:38:23 Found existing installation: pip 21.2.3 17:38:23 Uninstalling pip-21.2.3: 17:38:23 Successfully uninstalled pip-21.2.3 17:38:24 Successfully installed future-1.0.0 pip-24.2 17:38:24 + pip install markdown 17:38:25 Collecting markdown 17:38:25 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 17:38:25 Collecting importlib-metadata>=4.4 (from markdown) 17:38:25 Using cached importlib_metadata-8.4.0-py3-none-any.whl.metadata (4.7 kB) 17:38:25 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 17:38:25 Using cached zipp-3.20.1-py3-none-any.whl.metadata (3.7 kB) 17:38:25 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 17:38:25 Using cached importlib_metadata-8.4.0-py3-none-any.whl (26 kB) 17:38:25 Using cached zipp-3.20.1-py3-none-any.whl (9.0 kB) 17:38:25 Installing collected packages: zipp, importlib-metadata, markdown 17:38:25 Successfully installed importlib-metadata-8.4.0 markdown-3.7 zipp-3.20.1 17:38:25 + pip install reportlab 17:38:26 Collecting reportlab 17:38:26 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 17:38:27 Collecting pillow>=9.0.0 (from reportlab) 17:38:27 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 17:38:27 Collecting chardet (from reportlab) 17:38:27 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 17:38:27 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 17:38:27 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 17:38:27 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 17:38:27 Installing collected packages: pillow, chardet, reportlab 17:38:28 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 17:38:28 + pip install omego 17:38:29 Collecting omego 17:38:29 Using cached omego-0.7.0-py3-none-any.whl 17:38:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 17:38:29 Collecting yaclifw>=0.1.1 (from omego) 17:38:29 Using cached yaclifw-0.2.0-py3-none-any.whl 17:38:29 Collecting six (from yaclifw>=0.1.1->omego) 17:38:29 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 17:38:29 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 17:38:29 Installing collected packages: six, yaclifw, omego 17:38:29 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 17:38:29 + pip install tables 17:38:30 Collecting tables 17:38:30 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 17:38:31 Collecting numpy>=1.19.0 (from tables) 17:38:31 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 17:38:31 Collecting numexpr>=2.6.2 (from tables) 17:38:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 17:38:31 Collecting packaging (from tables) 17:38:31 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 17:38:31 Collecting py-cpuinfo (from tables) 17:38:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 17:38:31 Collecting blosc2>=2.3.0 (from tables) 17:38:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 17:38:31 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 17:38:31 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 17:38:31 Collecting msgpack (from blosc2>=2.3.0->tables) 17:38:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 17:38:31 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 17:38:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 17:38:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 17:38:31 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 17:38:31 Using cached packaging-24.1-py3-none-any.whl (53 kB) 17:38:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 17:38:31 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 17:38:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 17:38:32 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 17:38:36 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 17:38:36 + pip install jinja2 17:38:36 Collecting jinja2 17:38:36 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 17:38:37 Collecting MarkupSafe>=2.0 (from jinja2) 17:38:37 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 17:38:37 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 17:38:37 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 17:38:37 Installing collected packages: MarkupSafe, jinja2 17:38:37 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 17:38:37 + pip install omero-py 17:38:38 Collecting omero-py 17:38:38 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 17:38:38 Collecting urllib3<2 (from omero-py) 17:38:38 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 17:38:38 Collecting appdirs (from omero-py) 17:38:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 17:38:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 17:38:38 Collecting numpy<2 (from omero-py) 17:38:38 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 17:38:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 17:38:38 Collecting PyYAML (from omero-py) 17:38:38 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 17:38:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 17:38:38 Collecting requests (from omero-py) 17:38:38 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 17:38:38 Collecting portalocker (from omero-py) 17:38:38 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 17:38:39 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 17:38:39 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 17:38:39 Collecting idna<4,>=2.5 (from requests->omero-py) 17:38:39 Using cached idna-3.8-py3-none-any.whl.metadata (9.9 kB) 17:38:39 Collecting certifi>=2017.4.17 (from requests->omero-py) 17:38:39 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 17:38:39 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 17:38:39 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 17:38:39 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 17:38:39 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 17:38:39 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 17:38:39 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 17:38:39 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 17:38:39 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 17:38:39 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 17:38:39 Using cached idna-3.8-py3-none-any.whl (66 kB) 17:38:39 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 17:38:39 Attempting uninstall: numpy 17:38:39 Found existing installation: numpy 2.0.2 17:38:39 Uninstalling numpy-2.0.2: 17:38:39 Successfully uninstalled numpy-2.0.2 17:38:46 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.8 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19 17:38:46 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 17:38:47 Collecting omero-metadata 17:38:47 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-a9159zlc/omero-metadata_deb2413f14e8476d96c73d584448d6d2 17:38:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-a9159zlc/omero-metadata_deb2413f14e8476d96c73d584448d6d2 17:38:48 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9975534c690c4ea25c98545f7994c942c57a5341 17:38:48 Installing build dependencies: started 17:38:50 Installing build dependencies: finished with status 'done' 17:38:50 Getting requirements to build wheel: started 17:38:50 Getting requirements to build wheel: finished with status 'done' 17:38:50 Preparing metadata (pyproject.toml): started 17:38:51 Preparing metadata (pyproject.toml): finished with status 'done' 17:38:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 17:38:51 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 17:38:51 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 17:38:51 Collecting pandas (from omero-metadata) 17:38:51 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 17:38:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19) 17:38:51 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 17:38:51 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 17:38:51 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 17:38:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 17:38:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 17:38:51 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 17:38:51 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 17:38:51 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 17:38:51 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 17:38:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 17:38:51 Collecting pytz>=2020.1 (from pandas->omero-metadata) 17:38:51 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 17:38:51 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 17:38:51 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 17:38:51 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 17:38:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 17:38:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.8) 17:38:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4) 17:38:51 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 17:38:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 17:38:51 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 17:38:51 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 17:38:51 Building wheels for collected packages: omero-metadata 17:38:51 Building wheel for omero-metadata (pyproject.toml): started 17:38:52 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 17:38:52 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39114 sha256=0d6fe5e4e8040f3de586e5463d8ae2c3f57421335063b22b87778d71afe1dfb6 17:38:52 Stored in directory: /tmp/pip-ephem-wheel-cache-3ru5sqce/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 17:38:52 Successfully built omero-metadata 17:38:52 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 17:38:59 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 17:38:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 17:38:59 Collecting omero-cli-render 17:38:59 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-o7mrmwcy/omero-cli-render_f842258049e14ceead08e3e6102c37fb 17:38:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-o7mrmwcy/omero-cli-render_f842258049e14ceead08e3e6102c37fb 17:39:01 Running command git checkout -b merge_ci --track origin/merge_ci 17:39:01 Switched to a new branch 'merge_ci' 17:39:01 branch 'merge_ci' set up to track 'origin/merge_ci'. 17:39:01 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 057699e194f3eb0db20554b5cb039ffe7c3b9aaa 17:39:01 Installing build dependencies: started 17:39:04 Installing build dependencies: finished with status 'done' 17:39:04 Getting requirements to build wheel: started 17:39:04 Getting requirements to build wheel: finished with status 'done' 17:39:04 Preparing metadata (pyproject.toml): started 17:39:05 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 17:39:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 17:39:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19) 17:39:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 17:39:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 17:39:05 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 17:39:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 17:39:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 17:39:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 17:39:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 17:39:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 17:39:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.8) 17:39:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4) 17:39:05 Building wheels for collected packages: omero-cli-render 17:39:05 Building wheel for omero-cli-render (pyproject.toml): started 17:39:05 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 17:39:05 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=c819acd96f2171939a5da74ca9b7c657b46868a5fbc4175dc0d7e352d795622e 17:39:05 Stored in directory: /tmp/pip-ephem-wheel-cache-s97pxt6e/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 17:39:05 Successfully built omero-cli-render 17:39:05 Installing collected packages: omero-cli-render 17:39:05 Successfully installed omero-cli-render-0.8.2.dev0 17:39:05 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 17:39:06 Collecting omero-cli-duplicate 17:39:06 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-xrmo1d4n/omero-cli-duplicate_66b0f1b2f881473aa7e67d9251b830e2 17:39:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-xrmo1d4n/omero-cli-duplicate_66b0f1b2f881473aa7e67d9251b830e2 17:39:07 Running command git checkout -b merge_ci --track origin/merge_ci 17:39:07 Switched to a new branch 'merge_ci' 17:39:07 branch 'merge_ci' set up to track 'origin/merge_ci'. 17:39:07 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit eb0ab1054ad7345e7ea9120ec4b24d3d90547f15 17:39:07 Installing build dependencies: started 17:39:10 Installing build dependencies: finished with status 'done' 17:39:10 Getting requirements to build wheel: started 17:39:10 Getting requirements to build wheel: finished with status 'done' 17:39:10 Preparing metadata (pyproject.toml): started 17:39:10 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:10 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 17:39:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19) 17:39:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 17:39:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 17:39:10 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 17:39:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 17:39:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 17:39:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 17:39:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 17:39:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 17:39:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 17:39:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.8) 17:39:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4) 17:39:10 Building wheels for collected packages: omero-cli-duplicate 17:39:10 Building wheel for omero-cli-duplicate (pyproject.toml): started 17:39:11 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 17:39:11 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=a56c092766ac78ecd4394575439ad83f24027379100b6591bc04ced771c4533a 17:39:11 Stored in directory: /tmp/pip-ephem-wheel-cache-k3hi_9t3/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 17:39:11 Successfully built omero-cli-duplicate 17:39:11 Installing collected packages: omero-cli-duplicate 17:39:11 Successfully installed omero-cli-duplicate-0.4.1.dev0 17:39:11 + pip install omero-certificates 17:39:12 Collecting omero-certificates 17:39:12 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 17:39:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 17:39:12 Collecting distro==1.8.0 (from omero-certificates) 17:39:12 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 17:39:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19) 17:39:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 17:39:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 17:39:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 17:39:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 17:39:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 17:39:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 17:39:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 17:39:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 17:39:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 17:39:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.8) 17:39:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4) 17:39:12 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 17:39:12 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 17:39:12 Installing collected packages: distro, omero-certificates 17:39:12 Successfully installed distro-1.8.0 omero-certificates-0.3.2 17:39:12 + for x in *.tar.gz 17:39:12 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 17:39:12 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 17:39:13 Installing build dependencies: started 17:39:15 Installing build dependencies: finished with status 'done' 17:39:15 Getting requirements to build wheel: started 17:39:15 Getting requirements to build wheel: finished with status 'done' 17:39:15 Preparing metadata (pyproject.toml): started 17:39:16 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:16 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 17:39:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19) 17:39:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 17:39:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 17:39:16 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 17:39:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 17:39:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 17:39:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 17:39:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 17:39:16 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 17:39:16 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 17:39:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.8) 17:39:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4) 17:39:16 Building wheels for collected packages: omero-dropbox 17:39:16 Building wheel for omero-dropbox (pyproject.toml): started 17:39:16 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 17:39:16 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=661f1754e651a5dcaee343194c8c34418b5184b3c27936e294bb7407fd230f61 17:39:16 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 17:39:16 Successfully built omero-dropbox 17:39:16 Installing collected packages: omero-dropbox 17:39:16 Successfully installed omero-dropbox-5.7.1.dev0 17:39:17 + for x in *.tar.gz 17:39:17 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 17:39:17 Processing ./omero_marshal-0.9.1.dev0.tar.gz 17:39:17 Installing build dependencies: started 17:39:20 Installing build dependencies: finished with status 'done' 17:39:20 Getting requirements to build wheel: started 17:39:20 Getting requirements to build wheel: finished with status 'done' 17:39:20 Preparing metadata (pyproject.toml): started 17:39:20 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:20 Building wheels for collected packages: omero_marshal 17:39:20 Building wheel for omero_marshal (pyproject.toml): started 17:39:21 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 17:39:21 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=59b34b5260c307f0d12fd45271ff1edfd7905af06377695238ed9ab1973715c4 17:39:21 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 17:39:21 Successfully built omero_marshal 17:39:21 Installing collected packages: omero_marshal 17:39:21 Successfully installed omero_marshal-0.9.1.dev0 17:39:21 + for x in *.tar.gz 17:39:21 + pip install -U omero_py-5.19.5.dev0.tar.gz 17:39:22 Processing ./omero_py-5.19.5.dev0.tar.gz 17:39:22 Installing build dependencies: started 17:39:25 Installing build dependencies: finished with status 'done' 17:39:25 Getting requirements to build wheel: started 17:39:25 Getting requirements to build wheel: finished with status 'done' 17:39:25 Preparing metadata (pyproject.toml): started 17:39:25 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19) 17:39:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 17:39:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 17:39:25 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 17:39:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 17:39:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2) 17:39:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 17:39:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 17:39:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 17:39:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 17:39:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.8) 17:39:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4) 17:39:25 Building wheels for collected packages: omero-py 17:39:25 Building wheel for omero-py (pyproject.toml): started 17:39:26 Building wheel for omero-py (pyproject.toml): finished with status 'done' 17:39:26 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=7a211a5fe014b3af0b307b768b5f9d3d2a8a4f5572768352ae77a39377b3ec2c 17:39:26 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 17:39:26 Successfully built omero-py 17:39:27 Installing collected packages: omero-py 17:39:27 Attempting uninstall: omero-py 17:39:27 Found existing installation: omero-py 5.19.4 17:39:27 Uninstalling omero-py-5.19.4: 17:39:27 Successfully uninstalled omero-py-5.19.4 17:39:30 Successfully installed omero-py-5.19.5.dev0 17:39:30 + for x in *.tar.gz 17:39:30 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 17:39:30 Processing ./omero_scripts-5.8.4.dev0.tar.gz 17:39:30 Installing build dependencies: started 17:39:32 Installing build dependencies: finished with status 'done' 17:39:32 Getting requirements to build wheel: started 17:39:33 Getting requirements to build wheel: finished with status 'done' 17:39:33 Preparing metadata (pyproject.toml): started 17:39:33 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:33 Building wheels for collected packages: omero-scripts 17:39:33 Building wheel for omero-scripts (pyproject.toml): started 17:39:33 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 17:39:33 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116559 sha256=b86dbe96bbdf63864179e27b852a30182bdf62e8dafb1fd8e89beff2d1689975 17:39:33 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 17:39:33 Successfully built omero-scripts 17:39:33 Installing collected packages: omero-scripts 17:39:33 Successfully installed omero-scripts-5.8.4.dev0 17:39:33 + for x in *.tar.gz 17:39:33 + pip install -U omero_web-5.27.1.dev0.tar.gz 17:39:34 Processing ./omero_web-5.27.1.dev0.tar.gz 17:39:34 Installing build dependencies: started 17:39:36 Installing build dependencies: finished with status 'done' 17:39:36 Getting requirements to build wheel: started 17:39:37 Getting requirements to build wheel: finished with status 'done' 17:39:37 Preparing metadata (pyproject.toml): started 17:39:37 Preparing metadata (pyproject.toml): finished with status 'done' 17:39:37 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (5.19.5.dev0) 17:39:37 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.1.dev0) 17:39:37 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 17:39:37 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.1.dev0) 17:39:37 Using cached Django-4.2.15-py3-none-any.whl.metadata (4.1 kB) 17:39:37 Collecting django-pipeline==2.1.0 (from omero-web==5.27.1.dev0) 17:39:37 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 17:39:37 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.1.dev0) 17:39:37 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 17:39:37 Collecting django-csp (from omero-web==5.27.1.dev0) 17:39:37 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 17:39:37 Collecting whitenoise>=5.3.0 (from omero-web==5.27.1.dev0) 17:39:37 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 17:39:37 Collecting gunicorn>=19.3 (from omero-web==5.27.1.dev0) 17:39:37 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 17:39:37 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (0.9.1.dev0) 17:39:37 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (10.4.0) 17:39:37 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2024.1) 17:39:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2.10.1) 17:39:37 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (24.1) 17:39:38 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 17:39:38 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 17:39:38 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 17:39:38 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 17:39:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.19) 17:39:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.4.4) 17:39:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.0.0) 17:39:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.4) 17:39:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (6.0.2) 17:39:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.6.5) 17:39:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (2.32.3) 17:39:38 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.1.dev0) 17:39:38 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 17:39:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.3.2) 17:39:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.8) 17:39:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (2024.7.4) 17:39:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 17:39:38 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 17:39:38 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 17:39:38 Using cached Django-4.2.15-py3-none-any.whl (8.0 MB) 17:39:38 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 17:39:38 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 17:39:38 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 17:39:38 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 17:39:38 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 17:39:38 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 17:39:38 Building wheels for collected packages: omero-web 17:39:38 Building wheel for omero-web (pyproject.toml): started 17:39:39 Building wheel for omero-web (pyproject.toml): finished with status 'done' 17:39:39 Created wheel for omero-web: filename=omero_web-5.27.1.dev0-py3-none-any.whl size=2766640 sha256=ff5aebbf783271560f991a8b690f28da8847bad52a56eca809e26b75125128c9 17:39:39 Stored in directory: /home/omero/.cache/pip/wheels/95/a2/6f/d45832b3b9dfb05411e1514f5c4953422c04f1662dacdfe59a 17:39:39 Successfully built omero-web 17:39:39 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 17:39:42 Successfully installed Django-4.2.15 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 17:39:42 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 17:39:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 17:39:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 17:39:42 --2024-08-27 17:39:42-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 17:39:43 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... 17:39:43 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 17:39:43 HTTP request sent, awaiting response... 200 OK 17:39:43 Length: 95606 (93K) [text/plain] 17:39:43 Saving to: ‘Figure_To_Pdf.py’ 17:39:43 17:39:43 0K .......... .......... .......... .......... .......... 53% 3.53M 0s 17:39:43 50K .......... .......... .......... .......... ... 100% 4.93M=0.02s 17:39:43 17:39:43 2024-08-27 17:39:43 (4.06 MB/s) - ‘Figure_To_Pdf.py’ saved [95606/95606] 17:39:43 17:39:43 + chmod 755 Figure_To_Pdf.py 17:39:43 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 17:39:43 + omero config set omero.db.name OMERO-server 17:39:45 + omero config set omero.db.host pg 17:39:47 + omero config set omero.db.user postgres 17:39:49 + omero config set omero.data.dir /home/omero/omero-server-data 17:39:51 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 17:39:53 + omero config set omero.db.poolsize 25 17:39:55 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 17:39:57 + omero config set omero.security.trustStorePassword changeit 17:39:59 + omero config set omero.mail.config true 17:40:01 + omero config set omero.mail.from qa@openmicroscopy.org.uk 17:40:03 + omero config set omero.mail.host smtp.dundee.ac.uk 17:40:05 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 17:40:06 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 17:40:08 + omero certificates 17:40:10 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 17:40:10 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 17:40:10 + '[' false = true ']' 17:40:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 17:40:10 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 17:40:10 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 17:40:11 2024-08-27 17:40:11,035 [ omego.db] DEBUG dbcommand => upgrade 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG dbhost => localhost 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG dbname => OMERO-server 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG dbpass => omero 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG dbuser => omero 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG rootpass => omero 17:40:11 2024-08-27 17:40:11,036 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 17:40:11 2024-08-27 17:40:11,036 [omego.extern] INFO Executing : omero version 17:40:12 OMERO.py version: 17:40:12 OMERO.server version: 17:40:12 5.6.3-500-01e94f4734-ice36 17:40:12 5.19.5.dev0 17:40:13 2024-08-27 17:40:13,162 [omego.extern] INFO Completed [2.126 s] 17:40:13 2024-08-27 17:40:13,162 [omego.extern] DEBUG Using omero CLI from omero 17:40:13 2024-08-27 17:40:13,162 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 17:40:13 2024-08-27 17:40:13,163 [omego.extern] INFO Running [current environment]: omero config get --show-password 17:40:13 2024-08-27 17:40:13,163 [omego.extern] INFO Executing : omero config get --show-password 17:40:15 2024-08-27 17:40:15,315 [omego.extern] INFO Completed [2.153 s] 17:40:15 2024-08-27 17:40:15,316 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 17:40:15 2024-08-27 17:40:15,316 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 17:40:15 2024-08-27 17:40:15,324 [omego.extern] INFO Completed [0.007 s] 17:40:15 2024-08-27 17:40:15,324 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 17:40:15 2024-08-27 17:40:15,324 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 17:40:15 17:40:15 2024-08-27 17:40:15,324 [omego.extern] INFO Running [current environment]: omero config get --show-password 17:40:15 2024-08-27 17:40:15,324 [omego.extern] INFO Executing : omero config get --show-password 17:40:17 2024-08-27 17:40:17,521 [omego.extern] INFO Completed [2.196 s] 17:40:17 2024-08-27 17:40:17,521 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 17:40:17 2024-08-27 17:40:17,521 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 17:40:17 2024-08-27 17:40:17,534 [omego.extern] INFO Completed [0.013 s] 17:40:17 2024-08-27 17:40:17,534 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.2") at port "5432".\n' 17:40:17 2024-08-27 17:40:17,535 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 17:40:17 2024-08-27 17:40:17,535 [omego.extern] INFO Running [current environment]: omero config get --show-password 17:40:17 2024-08-27 17:40:17,535 [omego.extern] INFO Executing : omero config get --show-password 17:40:19 2024-08-27 17:40:19,500 [omego.extern] INFO Completed [1.965 s] 17:40:19 2024-08-27 17:40:19,500 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 17:40:19 2024-08-27 17:40:19,501 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 17:40:19 2024-08-27 17:40:19,519 [omego.extern] INFO Completed [0.018 s] 17:40:19 2024-08-27 17:40:19,519 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 17:40:19 2024-08-27 17:40:19,519 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 17:40:19 2024-08-27 17:40:19,522 [ omego.db] INFO Database is already at OMERO5.4__0 17:40:19 + export LANG=en_US.UTF-8 17:40:19 + LANG=en_US.UTF-8 17:40:19 + export LANGUAGE=en_US:en 17:40:19 + LANGUAGE=en_US:en 17:40:19 + export LC_ALL=en_US.UTF-8 17:40:19 + LC_ALL=en_US.UTF-8 17:40:19 + BUILD_ID=DONT_KILL_ME 17:40:19 + omero admin start 17:40:32 No descriptor given. Using etc/grid/default.xml 17:40:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 17:40:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 17:40:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 17:40:46 Waiting on startup. Use CTRL-C to exit 17:40:46 + omero admin waitup 17:40:48 Waiting on startup. Use CTRL-C to exit 17:40:49 + omero admin diagnostics 17:40:50 17:40:50 ================================================================================ 17:40:50 OMERO Diagnostics (admin) 17:40:50 ================================================================================ 17:40:50 17:40:50 Commands: java -version 11.0.22 (/usr/bin/java) 17:40:50 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 17:40:50 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 17:40:50 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 17:40:50 Commands: psql --version 16.2 (/usr/bin/psql) 17:40:51 Commands: openssl version 3.0.71 (/usr/bin/openssl) 17:40:51 17:40:51 Component: OMERO.py 5.19.5.dev0 17:40:51 Component: OMERO.server 5.6.3-500-01e94f4734-ice36 17:40:51 17:40:51 Server: icegridnode running 17:40:51 Server: Blitz-0 active (pid = 8214, enabled) 17:40:51 Server: Indexer-0 activating (enabled) 17:40:51 Server: OMERO.Glacier2 active (pid = 8238, enabled) 17:40:51 Server: OMERO.IceStorm active (pid = 8269, enabled) 17:40:51 Server: Processor-0 activating (enabled) 17:40:51 Server: Tables-0 activating (enabled) 17:40:51 17:40:51 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 17:40:51 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 17:40:51 Log files: DropBox.log n/a 17:40:51 Log files: FileServer.log n/a 17:40:51 Log files: Indexer-0.log 1.6 KB 17:40:51 Log files: MonitorServer.log n/a 17:40:51 Log files: Processor-0.log 592 B 17:40:51 Log files: Tables-0.log 841 B 17:40:51 Log files: TestDropBox.log n/a 17:40:51 Log files: master.err 180 B 17:40:51 Log files: master.out 30.1 KB 17:40:51 Log files: Total size 0.05 MB 17:40:51 17:40:51 17:40:51 Environment:OMERO_HOME=(unset) 17:40:51 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 17:40:51 Environment:OMERO_NODE=(unset) 17:40:51 Environment:OMERO_MASTER=(unset) 17:40:51 Environment:OMERO_USERDIR=(unset) 17:40:51 Environment:OMERO_TMPDIR=(unset) 17:40:51 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:40:51 Environment:PYTHONPATH=(unset) 17:40:51 Environment:ICE_HOME=/opt/ice-3.6.5 17:40:51 Environment:LD_LIBRARY_PATH=(unset) 17:40:51 Environment:DYLD_LIBRARY_PATH=(unset) 17:40:51 17:40:51 OMERO SSL port:4064 17:40:51 OMERO TCP port:4063 17:40:51 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 17:40:51 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 17:40:51 17:40:51 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 17:40:51 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 17:40:51 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 17:40:51 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 17:40:51 17:40:51 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 27 August 2024 54f6d2ab3c8d141c426cdb0b5a003d9f8bf8cd08 17:40:51 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 27 August 2024 54f6d2ab3c8d141c426cdb0b5a003d9f8bf8cd08 17:40:51 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 27 August 2024 54f6d2ab3c8d141c426cdb0b5a003d9f8bf8cd08 17:40:51 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 27 August 2024 5f9762edbb39b9de03d25f908c540f7fdbdeb0b8 17:40:51 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 17:40:51 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 17:40:51 Jar: lib/server/omero-gateway.jar jar 5.9.3-SNAPSHOT 17:40:51 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 17:40:51 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 17:40:51 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 17:40:51 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 17:40:51 + deactivate 17:40:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 17:40:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:40:51 + export PATH 17:40:51 + unset _OLD_VIRTUAL_PATH 17:40:51 + '[' -n '' ']' 17:40:51 + '[' -n /bin/bash -o -n '' ']' 17:40:51 + hash -r 17:40:51 + '[' -n '' ']' 17:40:51 + unset VIRTUAL_ENV 17:40:51 + '[' '!' '' = nondestructive ']' 17:40:51 + unset -f deactivate 17:40:51 Finished: SUCCESS