10:06:58 Started by upstream project "Trigger" build number 206 10:06:58 originally caused by: 10:06:58 Started by user devspace 10:06:58 Running as SYSTEM 10:06:58 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 10:06:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9212646240470985494.sh 10:06:59 + source /home/settings.env 10:06:59 ++ OMERO_DB_HOST=pg 10:06:59 ++ OMERO_DB_USER=postgres 10:06:59 ++ OMERO_DB_PASS= 10:06:59 ++ OMERO_ROOT_PASS=omero 10:06:59 ++ OMERO_DATA_DIR=/OMERO 10:06:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:06:59 + OMERO_DB_NAME=OMERO-server 10:06:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 10:06:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:06:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:06:59 + OMERO_DATA_DIR=/home/omero/omero-server-data 10:06:59 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 10:06:59 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 10:06:59 ++ deactivate nondestructive 10:06:59 ++ '[' -n '' ']' 10:06:59 ++ '[' -n '' ']' 10:06:59 ++ '[' -n /bin/bash -o -n '' ']' 10:06:59 ++ hash -r 10:06:59 ++ '[' -n '' ']' 10:06:59 ++ unset VIRTUAL_ENV 10:06:59 ++ '[' '!' nondestructive = nondestructive ']' 10:06:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 10:06:59 ++ export VIRTUAL_ENV 10:06:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:06:59 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:06:59 ++ export PATH 10:06:59 ++ '[' -n '' ']' 10:06:59 ++ '[' -z '' ']' 10:06:59 ++ _OLD_VIRTUAL_PS1= 10:06:59 ++ PS1='(.venv3) ' 10:06:59 ++ export PS1 10:06:59 ++ '[' -n /bin/bash -o -n '' ']' 10:06:59 ++ hash -r 10:06:59 + omero admin stop 10:07:25 Server not running 10:07:25 + echo not running 10:07:25 not running 10:07:25 + sleep 5 10:07:30 + deactivate 10:07:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 10:07:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:07:30 + export PATH 10:07:30 + unset _OLD_VIRTUAL_PATH 10:07:30 + '[' -n '' ']' 10:07:30 + '[' -n /bin/bash -o -n '' ']' 10:07:30 + hash -r 10:07:30 + '[' -n '' ']' 10:07:30 + unset VIRTUAL_ENV 10:07:30 + '[' '!' '' = nondestructive ']' 10:07:30 + unset -f deactivate 10:07:30 + rm -rf /home/omero/workspace/OMERO-server/.venv3 10:07:31 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 10:07:35 + '[' false = true ']' 10:07:35 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 10:07:35 Skipping PURGE_DATA:CleanDbAndRepo 10:07:35 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 10:07:38 Copied 1 artifact from "OMERO-build" build number 171 10:07:39 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 169 10:07:39 Copied 2 artifacts from "OMERO-build-build" build number 177 10:07:39 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3136864949267402453.sh 10:07:39 + source /home/settings.env 10:07:39 ++ OMERO_DB_HOST=pg 10:07:39 ++ OMERO_DB_USER=postgres 10:07:39 ++ OMERO_DB_PASS= 10:07:39 ++ OMERO_ROOT_PASS=omero 10:07:39 ++ OMERO_DATA_DIR=/OMERO 10:07:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:07:39 + OMERO_DB_NAME=OMERO-server 10:07:39 + OMERO_DATA_DIR=/home/omero/omero-server-data 10:07:39 + mkdir -p /home/omero/omero-server-data 10:07:39 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 10:07:39 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:07:39 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:07:39 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 10:07:39 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 10:07:39 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 10:07:39 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 10:07:39 ++ ls OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 10:07:39 + ZIP=OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 10:07:39 + '[' '!' -z '' ']' 10:07:39 + DIST=OMERO.server-5.6.3-504-fd852ee75d-ice36 10:07:39 + unzip OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 10:07:39 Archive: OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/blitz/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/grid/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/profiles/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/error/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/grid/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/luts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/luts/janelia/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/luts/ncsa_paledit/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/luts/wcif/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/analysis_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/annotation_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/export_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/figure_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/import_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/scripts/omero/util_scripts/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/server/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/share/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/share/licenses/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/misc/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__1/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__10/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__11/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__2/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__3/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__4/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__5/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__6/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__7/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__8/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3A__9/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3__4/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3__5/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3__6/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO3__7/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4.1__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4.2__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4.2__0/t/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4.3__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4.4__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO4__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.0__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.1__1/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.2__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.3__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4DEV__1/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4DEV__2/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4DEV__3/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/ 10:07:39 creating: OMERO.server-5.6.3-504-fd852ee75d-ice36/var/ 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/LICENSE.txt 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/backup.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/blitz/mail-senders.example 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/blitz/mail-server.example 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/build.properties 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/env.bat 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/env.sh 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/hibernate.properties 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/ice.config 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/logback-cli.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/logback-indexing-cli.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/logback-indexing.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/logback.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/mime.types 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/node1.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/node2.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/omero.properties 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/profiles/psql 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/rollover.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/Windows.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/error/maintainance.html 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/grid/README 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/grid/default.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/grid/templates.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/grid/windefault.xml 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/ice.config 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/internal.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/master.cfg 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/templates/robot.template 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/etc/testdropbox.config 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/history.rst 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/OMEZarrReader.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/activation.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aggdesigner-algorithm.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aircompressor.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/annotations.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/antlr.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aopalliance.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/avatica-core.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/avatica-metrics.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aws-java-sdk-core.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aws-java-sdk-kms.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/aws-java-sdk-s3.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/base.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-all.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-anim.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-awt-util.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-bridge.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-codec.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-constants.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-css.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-dom.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-ext.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-extension.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-gui-util.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-gvt.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-i18n.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-parser.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-rasterizer-ext.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-rasterizer.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-script.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-slideshow.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-squiggle-ext.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-squiggle.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-svg-dom.jar 10:07:39 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/lib/client/batik-svgbrowser.jar 10:07:39 inflating: 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OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/psql-header.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/schema.sql 10:07:41 inflating: OMERO.server-5.6.3-504-fd852ee75d-ice36/sql/psql/OMERO5.4__0/views.sql 10:07:41 + rm -f OMERO.server-5.6.3-504-fd852ee75d-ice36.zip 10:07:41 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-504-fd852ee75d-ice36 /home/omero/workspace/OMERO-server/OMERO.server 10:07:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 10:07:41 ++ deactivate nondestructive 10:07:41 ++ '[' -n '' ']' 10:07:41 ++ '[' -n '' ']' 10:07:41 ++ '[' -n /bin/bash -o -n '' ']' 10:07:41 ++ hash -r 10:07:41 ++ '[' -n '' ']' 10:07:41 ++ unset VIRTUAL_ENV 10:07:41 ++ '[' '!' nondestructive = nondestructive ']' 10:07:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 10:07:41 ++ export VIRTUAL_ENV 10:07:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:07:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:07:41 ++ export PATH 10:07:41 ++ '[' -n '' ']' 10:07:41 ++ '[' -z '' ']' 10:07:41 ++ _OLD_VIRTUAL_PS1= 10:07:41 ++ PS1='(.venv3) ' 10:07:41 ++ export PS1 10:07:41 ++ '[' -n /bin/bash -o -n '' ']' 10:07:41 ++ hash -r 10:07:41 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 10:07:42 Collecting zeroc-ice==3.6.5 10:07:43 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 10:07:44 Installing collected packages: zeroc-ice 10:07:45 Successfully installed zeroc-ice-3.6.5 10:07:45 + pip install -U pip future 10:07:46 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 10:07:46 Collecting pip 10:07:46 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 10:07:46 Collecting future 10:07:46 Using cached future-1.0.0-py3-none-any.whl (491 kB) 10:07:46 Installing collected packages: pip, future 10:07:46 Attempting uninstall: pip 10:07:46 Found existing installation: pip 21.2.3 10:07:47 Uninstalling pip-21.2.3: 10:07:47 Successfully uninstalled pip-21.2.3 10:07:48 Successfully installed future-1.0.0 pip-24.2 10:07:48 + pip install markdown 10:07:49 Collecting markdown 10:07:49 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 10:07:50 Collecting importlib-metadata>=4.4 (from markdown) 10:07:50 Using cached importlib_metadata-8.4.0-py3-none-any.whl.metadata (4.7 kB) 10:07:50 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 10:07:50 Using cached zipp-3.20.1-py3-none-any.whl.metadata (3.7 kB) 10:07:50 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 10:07:50 Using cached importlib_metadata-8.4.0-py3-none-any.whl (26 kB) 10:07:50 Using cached zipp-3.20.1-py3-none-any.whl (9.0 kB) 10:07:50 Installing collected packages: zipp, importlib-metadata, markdown 10:07:50 Successfully installed importlib-metadata-8.4.0 markdown-3.7 zipp-3.20.1 10:07:50 + pip install reportlab 10:07:51 Collecting reportlab 10:07:51 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 10:07:52 Collecting pillow>=9.0.0 (from reportlab) 10:07:52 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 10:07:52 Collecting chardet (from reportlab) 10:07:52 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 10:07:52 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 10:07:52 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 10:07:52 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 10:07:52 Installing collected packages: pillow, chardet, reportlab 10:07:54 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 10:07:54 + pip install omego 10:07:55 Collecting omego 10:07:55 Using cached omego-0.7.0-py3-none-any.whl 10:07:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 10:07:55 Collecting yaclifw>=0.1.1 (from omego) 10:07:55 Using cached yaclifw-0.2.0-py3-none-any.whl 10:07:55 Collecting six (from yaclifw>=0.1.1->omego) 10:07:55 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 10:07:55 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 10:07:55 Installing collected packages: six, yaclifw, omego 10:07:55 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 10:07:55 + pip install tables 10:07:56 Collecting tables 10:07:56 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 10:07:57 Collecting numpy>=1.19.0 (from tables) 10:07:57 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 10:07:57 Collecting numexpr>=2.6.2 (from tables) 10:07:57 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 10:07:57 Collecting packaging (from tables) 10:07:57 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 10:07:57 Collecting py-cpuinfo (from tables) 10:07:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 10:07:58 Collecting blosc2>=2.3.0 (from tables) 10:07:58 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 10:07:58 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 10:07:58 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 10:07:58 Collecting msgpack (from blosc2>=2.3.0->tables) 10:07:58 Downloading msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 10:07:58 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 10:07:58 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 10:07:58 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 10:07:58 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 10:07:58 Using cached packaging-24.1-py3-none-any.whl (53 kB) 10:07:59 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 10:07:59 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 10:07:59 Downloading msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 10:07:59 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 10:08:03 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 10:08:03 + pip install jinja2 10:08:04 Collecting jinja2 10:08:04 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 10:08:04 Collecting MarkupSafe>=2.0 (from jinja2) 10:08:04 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 10:08:04 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 10:08:04 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 10:08:04 Installing collected packages: MarkupSafe, jinja2 10:08:04 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 10:08:05 + pip install omero-py 10:08:05 Collecting omero-py 10:08:05 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 10:08:05 Collecting urllib3<2 (from omero-py) 10:08:05 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 10:08:05 Collecting appdirs (from omero-py) 10:08:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 10:08:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 10:08:06 Collecting numpy<2 (from omero-py) 10:08:06 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 10:08:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 10:08:06 Collecting PyYAML (from omero-py) 10:08:06 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 10:08:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 10:08:06 Collecting requests (from omero-py) 10:08:06 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 10:08:06 Collecting portalocker (from omero-py) 10:08:06 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 10:08:06 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 10:08:06 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 10:08:06 Collecting idna<4,>=2.5 (from requests->omero-py) 10:08:06 Using cached idna-3.8-py3-none-any.whl.metadata (9.9 kB) 10:08:06 Collecting certifi>=2017.4.17 (from requests->omero-py) 10:08:06 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) 10:08:06 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 10:08:07 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 10:08:07 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 10:08:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:08:07 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 10:08:07 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 10:08:07 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 10:08:07 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) 10:08:07 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 10:08:07 Using cached idna-3.8-py3-none-any.whl (66 kB) 10:08:07 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 10:08:08 Attempting uninstall: numpy 10:08:08 Found existing installation: numpy 2.0.2 10:08:08 Uninstalling numpy-2.0.2: 10:08:08 Successfully uninstalled numpy-2.0.2 10:08:13 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.8 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20 10:08:13 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 10:08:13 Collecting omero-metadata 10:08:13 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-u20ag4n0/omero-metadata_9267fd19a13f46728ddea6d8ebba65a3 10:08:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-u20ag4n0/omero-metadata_9267fd19a13f46728ddea6d8ebba65a3 10:08:14 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit d3241263627ce156f1716010814957a387d26d0b 10:08:14 Installing build dependencies: started 10:08:17 Installing build dependencies: finished with status 'done' 10:08:17 Getting requirements to build wheel: started 10:08:18 Getting requirements to build wheel: finished with status 'done' 10:08:18 Preparing metadata (pyproject.toml): started 10:08:18 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 10:08:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 10:08:18 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 10:08:18 Collecting pandas (from omero-metadata) 10:08:18 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 10:08:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 10:08:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 10:08:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 10:08:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 10:08:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 10:08:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 10:08:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 10:08:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 10:08:19 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 10:08:19 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 10:08:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 10:08:19 Collecting pytz>=2020.1 (from pandas->omero-metadata) 10:08:19 Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 10:08:19 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 10:08:19 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 10:08:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 10:08:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 10:08:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.8) 10:08:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30) 10:08:19 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 10:08:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 10:08:19 Downloading pytz-2024.2-py2.py3-none-any.whl (508 kB) 10:08:19 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 10:08:19 Building wheels for collected packages: omero-metadata 10:08:19 Building wheel for omero-metadata (pyproject.toml): started 10:08:20 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 10:08:20 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39188 sha256=cbc5ab9275c13db54ed6ecacee044dbe0f7d7dc1e581e90be70485954de2bd81 10:08:20 Stored in directory: /tmp/pip-ephem-wheel-cache-yz98y4tj/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 10:08:20 Successfully built omero-metadata 10:08:20 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 10:08:26 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1 10:08:26 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 10:08:27 Collecting omero-cli-render 10:08:27 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-cgprbtds/omero-cli-render_b6204c6b7dd94b20a24f50667718cdfd 10:08:27 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-cgprbtds/omero-cli-render_b6204c6b7dd94b20a24f50667718cdfd 10:08:27 Running command git checkout -b merge_ci --track origin/merge_ci 10:08:28 Switched to a new branch 'merge_ci' 10:08:28 branch 'merge_ci' set up to track 'origin/merge_ci'. 10:08:28 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 02293cfb6b401b1e3d3d87ec59da9765054a81db 10:08:28 Installing build dependencies: started 10:08:30 Installing build dependencies: finished with status 'done' 10:08:30 Getting requirements to build wheel: started 10:08:30 Getting requirements to build wheel: finished with status 'done' 10:08:30 Preparing metadata (pyproject.toml): started 10:08:30 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 10:08:30 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 10:08:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 10:08:30 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 10:08:30 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 10:08:30 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 10:08:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 10:08:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 10:08:30 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 10:08:30 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 10:08:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 10:08:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.8) 10:08:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30) 10:08:31 Building wheels for collected packages: omero-cli-render 10:08:31 Building wheel for omero-cli-render (pyproject.toml): started 10:08:31 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 10:08:31 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18030 sha256=7226b35b0fc69d94daacb2a3c9c3787d279de16fed1eb2fb281f7d61b5fac213 10:08:31 Stored in directory: /tmp/pip-ephem-wheel-cache-lt_9ct4g/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 10:08:31 Successfully built omero-cli-render 10:08:31 Installing collected packages: omero-cli-render 10:08:31 Successfully installed omero-cli-render-0.8.2.dev0 10:08:31 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 10:08:31 Collecting omero-cli-duplicate 10:08:31 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-r9bqkjva/omero-cli-duplicate_c4bc5de423604d17bbfc81345b18b9bd 10:08:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-r9bqkjva/omero-cli-duplicate_c4bc5de423604d17bbfc81345b18b9bd 10:08:32 Running command git checkout -b merge_ci --track origin/merge_ci 10:08:33 Switched to a new branch 'merge_ci' 10:08:33 branch 'merge_ci' set up to track 'origin/merge_ci'. 10:08:33 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 950268e4b7513e260df95365776c9d370fd48425 10:08:33 Installing build dependencies: started 10:08:36 Installing build dependencies: finished with status 'done' 10:08:36 Getting requirements to build wheel: started 10:08:36 Getting requirements to build wheel: finished with status 'done' 10:08:36 Preparing metadata (pyproject.toml): started 10:08:37 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:37 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 10:08:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 10:08:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 10:08:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 10:08:37 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 10:08:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 10:08:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 10:08:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 10:08:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 10:08:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 10:08:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 10:08:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.8) 10:08:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30) 10:08:37 Building wheels for collected packages: omero-cli-duplicate 10:08:37 Building wheel for omero-cli-duplicate (pyproject.toml): started 10:08:37 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 10:08:37 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=cc1bdde7e730a3fb373731e433f95a43135552fa19d6649d47459301b99d5a6f 10:08:37 Stored in directory: /tmp/pip-ephem-wheel-cache-cyvv_j3g/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 10:08:37 Successfully built omero-cli-duplicate 10:08:37 Installing collected packages: omero-cli-duplicate 10:08:37 Successfully installed omero-cli-duplicate-0.4.1.dev0 10:08:38 + pip install omero-certificates 10:08:38 Collecting omero-certificates 10:08:38 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 10:08:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 10:08:38 Collecting distro==1.8.0 (from omero-certificates) 10:08:38 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 10:08:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 10:08:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 10:08:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 10:08:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 10:08:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 10:08:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 10:08:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 10:08:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 10:08:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 10:08:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 10:08:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.8) 10:08:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30) 10:08:38 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 10:08:38 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 10:08:38 Installing collected packages: distro, omero-certificates 10:08:38 Successfully installed distro-1.8.0 omero-certificates-0.3.2 10:08:38 + for x in *.tar.gz 10:08:38 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 10:08:39 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 10:08:39 Installing build dependencies: started 10:08:41 Installing build dependencies: finished with status 'done' 10:08:41 Getting requirements to build wheel: started 10:08:41 Getting requirements to build wheel: finished with status 'done' 10:08:41 Preparing metadata (pyproject.toml): started 10:08:41 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:41 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 10:08:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 10:08:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 10:08:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 10:08:41 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 10:08:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 10:08:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 10:08:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 10:08:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 10:08:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 10:08:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 10:08:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.8) 10:08:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30) 10:08:41 Building wheels for collected packages: omero-dropbox 10:08:41 Building wheel for omero-dropbox (pyproject.toml): started 10:08:42 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 10:08:42 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49055 sha256=cffe56ab2b2999c8c6fa26be9f5503d2b10803eae606f4bc23dab0fb54477fea 10:08:42 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 10:08:42 Successfully built omero-dropbox 10:08:42 Installing collected packages: omero-dropbox 10:08:42 Successfully installed omero-dropbox-5.7.1.dev0 10:08:42 + for x in *.tar.gz 10:08:42 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 10:08:43 Processing ./omero_marshal-0.9.1.dev0.tar.gz 10:08:43 Installing build dependencies: started 10:08:45 Installing build dependencies: finished with status 'done' 10:08:45 Getting requirements to build wheel: started 10:08:45 Getting requirements to build wheel: finished with status 'done' 10:08:45 Preparing metadata (pyproject.toml): started 10:08:45 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:45 Building wheels for collected packages: omero_marshal 10:08:45 Building wheel for omero_marshal (pyproject.toml): started 10:08:46 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 10:08:46 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=b85c7378e319d73e43dad683f3a5c7a001e0e074f6d6bfee014aab11b7ade12c 10:08:46 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 10:08:46 Successfully built omero_marshal 10:08:46 Installing collected packages: omero_marshal 10:08:46 Successfully installed omero_marshal-0.9.1.dev0 10:08:46 + for x in *.tar.gz 10:08:46 + pip install -U omero_py-5.19.5.dev0.tar.gz 10:08:47 Processing ./omero_py-5.19.5.dev0.tar.gz 10:08:47 Installing build dependencies: started 10:08:49 Installing build dependencies: finished with status 'done' 10:08:49 Getting requirements to build wheel: started 10:08:49 Getting requirements to build wheel: finished with status 'done' 10:08:49 Preparing metadata (pyproject.toml): started 10:08:50 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.20) 10:08:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 10:08:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 10:08:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 10:08:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 10:08:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2) 10:08:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 10:08:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 10:08:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 10:08:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 10:08:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.8) 10:08:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.8.30) 10:08:50 Building wheels for collected packages: omero-py 10:08:50 Building wheel for omero-py (pyproject.toml): started 10:08:51 Building wheel for omero-py (pyproject.toml): finished with status 'done' 10:08:51 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=e2ba29b95dde0c5e8f781d803fc5c3bed9f45006c8680d161d8d3e38fbb20c02 10:08:51 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 10:08:51 Successfully built omero-py 10:08:51 Installing collected packages: omero-py 10:08:51 Attempting uninstall: omero-py 10:08:51 Found existing installation: omero-py 5.19.4 10:08:51 Uninstalling omero-py-5.19.4: 10:08:52 Successfully uninstalled omero-py-5.19.4 10:08:54 Successfully installed omero-py-5.19.5.dev0 10:08:54 + for x in *.tar.gz 10:08:54 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 10:08:54 Processing ./omero_scripts-5.8.4.dev0.tar.gz 10:08:54 Installing build dependencies: started 10:08:56 Installing build dependencies: finished with status 'done' 10:08:56 Getting requirements to build wheel: started 10:08:56 Getting requirements to build wheel: finished with status 'done' 10:08:56 Preparing metadata (pyproject.toml): started 10:08:57 Preparing metadata (pyproject.toml): finished with status 'done' 10:08:57 Building wheels for collected packages: omero-scripts 10:08:57 Building wheel for omero-scripts (pyproject.toml): started 10:08:57 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 10:08:57 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116559 sha256=fb873465b2f0a920556fd48e35a7ca7f9c27d64ed445637ad28ee1ce9a00e11a 10:08:57 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 10:08:57 Successfully built omero-scripts 10:08:57 Installing collected packages: omero-scripts 10:08:57 Successfully installed omero-scripts-5.8.4.dev0 10:08:57 + for x in *.tar.gz 10:08:57 + pip install -U omero_web-5.27.3.dev0.tar.gz 10:08:58 Processing ./omero_web-5.27.3.dev0.tar.gz 10:08:58 Installing build dependencies: started 10:09:00 Installing build dependencies: finished with status 'done' 10:09:00 Getting requirements to build wheel: started 10:09:01 Getting requirements to build wheel: finished with status 'done' 10:09:01 Preparing metadata (pyproject.toml): started 10:09:01 Preparing metadata (pyproject.toml): finished with status 'done' 10:09:01 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.5.dev0) 10:09:01 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0) 10:09:01 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 10:09:01 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0) 10:09:01 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB) 10:09:01 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0) 10:09:01 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 10:09:02 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0) 10:09:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 10:09:02 Collecting django-csp (from omero-web==5.27.3.dev0) 10:09:02 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 10:09:02 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0) 10:09:02 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 10:09:02 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0) 10:09:02 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 10:09:02 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0) 10:09:02 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0) 10:09:02 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2) 10:09:02 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1) 10:09:02 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1) 10:09:02 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 10:09:02 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 10:09:02 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 10:09:02 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 10:09:02 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20) 10:09:02 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4) 10:09:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0) 10:09:02 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4) 10:09:02 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2) 10:09:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5) 10:09:02 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3) 10:09:02 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 10:09:02 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 10:09:02 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2) 10:09:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.8) 10:09:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30) 10:09:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 10:09:02 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 10:09:02 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 10:09:02 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB) 10:09:03 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 10:09:03 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 10:09:03 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 10:09:03 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 10:09:03 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 10:09:03 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 10:09:03 Building wheels for collected packages: omero-web 10:09:03 Building wheel for omero-web (pyproject.toml): started 10:09:04 Building wheel for omero-web (pyproject.toml): finished with status 'done' 10:09:04 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766598 sha256=fa1375752200c343e04a49fb5b5ceed7ad0cae220395a3a4a451f1231e9610c7 10:09:04 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b 10:09:04 Successfully built omero-web 10:09:05 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 10:09:08 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 10:09:08 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 10:09:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 10:09:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 10:09:08 --2024-09-11 10:09:08-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 10:09:09 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ... 10:09:09 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 10:09:09 HTTP request sent, awaiting response... 200 OK 10:09:09 Length: 98989 (97K) [text/plain] 10:09:09 Saving to: ‘Figure_To_Pdf.py’ 10:09:09 10:09:09 0K .......... .......... .......... .......... .......... 51% 3.10M 0s 10:09:09 50K .......... .......... .......... .......... ...... 100% 5.88M=0.02s 10:09:09 10:09:09 2024-09-11 10:09:09 (4.02 MB/s) - ‘Figure_To_Pdf.py’ saved [98989/98989] 10:09:09 10:09:09 + chmod 755 Figure_To_Pdf.py 10:09:09 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 10:09:09 + omero config set omero.db.name OMERO-server 10:09:11 + omero config set omero.db.host pg 10:09:13 + omero config set omero.db.user postgres 10:09:14 + omero config set omero.data.dir /home/omero/omero-server-data 10:09:16 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 10:09:17 + omero config set omero.db.poolsize 25 10:09:19 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 10:09:21 + omero config set omero.security.trustStorePassword changeit 10:09:22 + omero config set omero.mail.config true 10:09:24 + omero config set omero.mail.from qa@openmicroscopy.org.uk 10:09:26 + omero config set omero.mail.host smtp.dundee.ac.uk 10:09:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 10:09:29 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 10:09:31 + omero certificates 10:09:32 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 10:09:32 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 10:09:32 + '[' false = true ']' 10:09:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 10:09:32 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 10:09:32 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG dbcommand => upgrade 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG dbhost => localhost 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG dbname => OMERO-server 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG dbpass => omero 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG dbuser => omero 10:09:33 2024-09-11 10:09:33,129 [ omego.db] DEBUG rootpass => omero 10:09:33 2024-09-11 10:09:33,130 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 10:09:33 2024-09-11 10:09:33,130 [omego.extern] INFO Executing : omero version 10:09:34 OMERO.py version: 10:09:34 OMERO.server version: 10:09:34 5.6.3-504-fd852ee75d-ice36 10:09:34 5.19.5.dev0 10:09:34 2024-09-11 10:09:34,735 [omego.extern] INFO Completed [1.605 s] 10:09:34 2024-09-11 10:09:34,735 [omego.extern] DEBUG Using omero CLI from omero 10:09:34 2024-09-11 10:09:34,735 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 10:09:34 2024-09-11 10:09:34,736 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:09:34 2024-09-11 10:09:34,736 [omego.extern] INFO Executing : omero config get --show-password 10:09:36 2024-09-11 10:09:36,462 [omego.extern] INFO Completed [1.726 s] 10:09:36 2024-09-11 10:09:36,463 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:09:36 2024-09-11 10:09:36,463 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 10:09:36 2024-09-11 10:09:36,590 [omego.extern] INFO Completed [0.127 s] 10:09:36 2024-09-11 10:09:36,590 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 10:09:36 2024-09-11 10:09:36,590 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 10:09:36 10:09:36 2024-09-11 10:09:36,590 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:09:36 2024-09-11 10:09:36,590 [omego.extern] INFO Executing : omero config get --show-password 10:09:38 2024-09-11 10:09:38,272 [omego.extern] INFO Completed [1.681 s] 10:09:38 2024-09-11 10:09:38,272 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:09:38 2024-09-11 10:09:38,272 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 10:09:38 2024-09-11 10:09:38,451 [omego.extern] INFO Completed [0.179 s] 10:09:38 2024-09-11 10:09:38,452 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 10:09:38 2024-09-11 10:09:38,452 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 10:09:38 2024-09-11 10:09:38,452 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:09:38 2024-09-11 10:09:38,452 [omego.extern] INFO Executing : omero config get --show-password 10:09:39 2024-09-11 10:09:39,975 [omego.extern] INFO Completed [1.523 s] 10:09:39 2024-09-11 10:09:39,976 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:09:39 2024-09-11 10:09:39,976 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 10:09:40 2024-09-11 10:09:40,878 [omego.extern] INFO Completed [0.902 s] 10:09:40 2024-09-11 10:09:40,878 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 10:09:40 2024-09-11 10:09:40,879 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 10:09:40 2024-09-11 10:09:40,880 [ omego.db] INFO Database is already at OMERO5.4__0 10:09:40 + export LANG=en_US.UTF-8 10:09:40 + LANG=en_US.UTF-8 10:09:40 + export LANGUAGE=en_US:en 10:09:40 + LANGUAGE=en_US:en 10:09:40 + export LC_ALL=en_US.UTF-8 10:09:40 + LC_ALL=en_US.UTF-8 10:09:40 + BUILD_ID=DONT_KILL_ME 10:09:40 + omero admin start 10:09:52 No descriptor given. Using etc/grid/default.xml 10:10:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 10:10:09 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 10:10:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 10:10:09 Waiting on startup. Use CTRL-C to exit 10:10:10 + omero admin waitup 10:10:11 Waiting on startup. Use CTRL-C to exit 10:10:12 + omero admin diagnostics 10:10:14 10:10:14 ================================================================================ 10:10:14 OMERO Diagnostics (admin) 10:10:14 ================================================================================ 10:10:14 10:10:14 Commands: java -version 11.0.22 (/usr/bin/java) 10:10:14 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 10:10:14 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 10:10:14 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 10:10:14 Commands: psql --version 16.2 (/usr/bin/psql) 10:10:14 Commands: openssl version 3.0.71 (/usr/bin/openssl) 10:10:14 10:10:14 Component: OMERO.py 5.19.5.dev0 10:10:14 Component: OMERO.server 5.6.3-504-fd852ee75d-ice36 10:10:14 10:10:14 Server: icegridnode running 10:10:14 Server: Blitz-0 active (pid = 3223, enabled) 10:10:14 Server: Indexer-0 active (pid = 3245, enabled) 10:10:14 Server: OMERO.Glacier2 active (pid = 3250, enabled) 10:10:14 Server: OMERO.IceStorm active (pid = 3268, enabled) 10:10:14 Server: Processor-0 activating (enabled) 10:10:14 Server: Tables-0 activating (enabled) 10:10:14 10:10:14 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 10:10:14 Log files: Blitz-0.log 22.1 KB errors=0 warnings=1 10:10:14 Log files: DropBox.log n/a 10:10:14 Log files: FileServer.log n/a 10:10:14 Log files: Indexer-0.log 2.6 KB 10:10:14 Log files: MonitorServer.log n/a 10:10:14 Log files: Processor-0.log 592 B 10:10:14 Log files: Tables-0.log 841 B 10:10:14 Log files: TestDropBox.log n/a 10:10:14 Log files: master.err 180 B 10:10:14 Log files: master.out 30.1 KB 10:10:14 Log files: Total size 0.06 MB 10:10:14 10:10:14 10:10:14 Environment:OMERO_HOME=(unset) 10:10:14 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:10:14 Environment:OMERO_NODE=(unset) 10:10:14 Environment:OMERO_MASTER=(unset) 10:10:14 Environment:OMERO_USERDIR=(unset) 10:10:14 Environment:OMERO_TMPDIR=(unset) 10:10:14 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:10:14 Environment:PYTHONPATH=(unset) 10:10:14 Environment:ICE_HOME=/opt/ice-3.6.5 10:10:14 Environment:LD_LIBRARY_PATH=(unset) 10:10:14 Environment:DYLD_LIBRARY_PATH=(unset) 10:10:14 10:10:14 OMERO SSL port:4064 10:10:14 OMERO TCP port:4063 10:10:14 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 10:10:14 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 10:10:14 10:10:14 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:10:14 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:10:14 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:10:14 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:10:14 10:10:14 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 11 September 2024 09e557b2b0faca9a0d589b6618a2d20dca89f967 10:10:14 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 11 September 2024 09e557b2b0faca9a0d589b6618a2d20dca89f967 10:10:14 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 11 September 2024 09e557b2b0faca9a0d589b6618a2d20dca89f967 10:10:14 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 11 September 2024 adca6a7d4e002b5a08716ec3cc68fa4e28cbcac9 10:10:14 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 10:10:14 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 10:10:14 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT 10:10:14 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 10:10:14 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 10:10:14 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 10:10:14 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 10:10:15 + deactivate 10:10:15 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 10:10:15 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:10:15 + export PATH 10:10:15 + unset _OLD_VIRTUAL_PATH 10:10:15 + '[' -n '' ']' 10:10:15 + '[' -n /bin/bash -o -n '' ']' 10:10:15 + hash -r 10:10:15 + '[' -n '' ']' 10:10:15 + unset VIRTUAL_ENV 10:10:15 + '[' '!' '' = nondestructive ']' 10:10:15 + unset -f deactivate 10:10:15 Finished: SUCCESS