01:00:37 Started by upstream project "Trigger" build number 211 01:00:37 originally caused by: 01:00:37 Started by timer 01:00:37 Running as SYSTEM 01:00:37 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:00:37 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2253003241828953524.sh 01:00:37 + source /home/settings.env 01:00:37 ++ OMERO_DB_HOST=pg 01:00:37 ++ OMERO_DB_USER=postgres 01:00:37 ++ OMERO_DB_PASS= 01:00:37 ++ OMERO_ROOT_PASS=omero 01:00:37 ++ OMERO_DATA_DIR=/OMERO 01:00:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:00:37 + OMERO_DB_NAME=OMERO-server 01:00:37 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:00:37 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:00:37 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:00:37 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:00:37 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:00:37 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:00:38 ++ deactivate nondestructive 01:00:38 ++ '[' -n '' ']' 01:00:38 ++ '[' -n '' ']' 01:00:38 ++ '[' -n /bin/bash -o -n '' ']' 01:00:38 ++ hash -r 01:00:38 ++ '[' -n '' ']' 01:00:38 ++ unset VIRTUAL_ENV 01:00:38 ++ '[' '!' nondestructive = nondestructive ']' 01:00:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:00:38 ++ export VIRTUAL_ENV 01:00:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:00:38 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:00:38 ++ export PATH 01:00:38 ++ '[' -n '' ']' 01:00:38 ++ '[' -z '' ']' 01:00:38 ++ _OLD_VIRTUAL_PS1= 01:00:38 ++ PS1='(.venv3) ' 01:00:38 ++ export PS1 01:00:38 ++ '[' -n /bin/bash -o -n '' ']' 01:00:38 ++ hash -r 01:00:38 + omero admin stop 01:00:59 Waiting on shutdown. Use CTRL-C to exit 01:00:59 .+ sleep 5 01:01:15 + deactivate 01:01:15 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:01:15 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:01:15 + export PATH 01:01:15 + unset _OLD_VIRTUAL_PATH 01:01:15 + '[' -n '' ']' 01:01:15 + '[' -n /bin/bash -o -n '' ']' 01:01:15 + hash -r 01:01:15 + '[' -n '' ']' 01:01:15 + unset VIRTUAL_ENV 01:01:15 + '[' '!' '' = nondestructive ']' 01:01:15 + unset -f deactivate 01:01:15 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:01:18 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 01:01:24 + '[' false = true ']' 01:01:24 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:01:24 Skipping PURGE_DATA:CleanDbAndRepo 01:01:24 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:01:28 Copied 1 artifact from "OMERO-build" build number 176 01:01:30 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 174 01:01:30 Copied 2 artifacts from "OMERO-build-build" build number 182 01:01:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17037149902668196153.sh 01:01:30 + source /home/settings.env 01:01:30 ++ OMERO_DB_HOST=pg 01:01:30 ++ OMERO_DB_USER=postgres 01:01:30 ++ OMERO_DB_PASS= 01:01:30 ++ OMERO_ROOT_PASS=omero 01:01:30 ++ OMERO_DATA_DIR=/OMERO 01:01:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:01:30 + OMERO_DB_NAME=OMERO-server 01:01:30 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:01:30 + mkdir -p /home/omero/omero-server-data 01:01:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:01:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:01:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:01:30 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:01:30 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:01:30 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:01:30 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:01:30 ++ ls OMERO.server-5.6.3-505-910aa6dca9-ice36.zip 01:01:30 + ZIP=OMERO.server-5.6.3-505-910aa6dca9-ice36.zip 01:01:30 + '[' '!' -z '' ']' 01:01:30 + DIST=OMERO.server-5.6.3-505-910aa6dca9-ice36 01:01:30 + unzip OMERO.server-5.6.3-505-910aa6dca9-ice36.zip 01:01:30 Archive: OMERO.server-5.6.3-505-910aa6dca9-ice36.zip 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/blitz/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/grid/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/profiles/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/error/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/grid/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/luts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/luts/janelia/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/luts/ncsa_paledit/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/luts/wcif/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/analysis_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/annotation_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/export_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/figure_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/import_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/scripts/omero/util_scripts/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/server/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/share/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/share/licenses/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/misc/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__1/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__10/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__11/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__2/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__3/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__4/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__5/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__6/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__7/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__8/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3A__9/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3__4/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3__5/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3__6/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO3__7/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4.1__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4.2__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4.2__0/t/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4.3__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4.4__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO4__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.0__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.1__1/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.2__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__1/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__2/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__3/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/ 01:01:30 creating: OMERO.server-5.6.3-505-910aa6dca9-ice36/var/ 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/LICENSE.txt 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/backup.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/blitz/mail-senders.example 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/blitz/mail-server.example 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/build.properties 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/env.bat 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/env.sh 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/hibernate.properties 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/ice.config 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/logback-cli.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/logback-indexing-cli.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/logback-indexing.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/logback.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/mime.types 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/node1.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/node2.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/omero.properties 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/profiles/psql 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/rollover.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/Windows.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/error/maintainance.html 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/grid/README 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/grid/default.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/grid/templates.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/grid/windefault.xml 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/ice.config 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/internal.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/master.cfg 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/templates/robot.template 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/etc/testdropbox.config 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/history.rst 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/OMEZarrReader.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/activation.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aggdesigner-algorithm.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aircompressor.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/annotations.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/antlr.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aopalliance.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/avatica-core.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/avatica-metrics.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aws-java-sdk-core.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aws-java-sdk-kms.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/aws-java-sdk-s3.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/base.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-all.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-anim.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-awt-util.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-bridge.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-codec.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-constants.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-css.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-dom.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-ext.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-extension.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-gui-util.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-gvt.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-i18n.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-parser.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-rasterizer-ext.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-rasterizer.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-script.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-slideshow.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-squiggle-ext.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-squiggle.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-svg-dom.jar 01:01:30 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/lib/client/batik-svgbrowser.jar 01:01:30 inflating: 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OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/psql-header.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/schema.sql 01:01:33 inflating: OMERO.server-5.6.3-505-910aa6dca9-ice36/sql/psql/OMERO5.4__0/views.sql 01:01:33 + rm -f OMERO.server-5.6.3-505-910aa6dca9-ice36.zip 01:01:33 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-505-910aa6dca9-ice36 /home/omero/workspace/OMERO-server/OMERO.server 01:01:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:01:33 ++ deactivate nondestructive 01:01:33 ++ '[' -n '' ']' 01:01:33 ++ '[' -n '' ']' 01:01:33 ++ '[' -n /bin/bash -o -n '' ']' 01:01:33 ++ hash -r 01:01:33 ++ '[' -n '' ']' 01:01:33 ++ unset VIRTUAL_ENV 01:01:33 ++ '[' '!' nondestructive = nondestructive ']' 01:01:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:01:33 ++ export VIRTUAL_ENV 01:01:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:01:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:01:33 ++ export PATH 01:01:33 ++ '[' -n '' ']' 01:01:33 ++ '[' -z '' ']' 01:01:33 ++ _OLD_VIRTUAL_PS1= 01:01:33 ++ PS1='(.venv3) ' 01:01:33 ++ export PS1 01:01:33 ++ '[' -n /bin/bash -o -n '' ']' 01:01:33 ++ hash -r 01:01:33 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:01:34 Collecting zeroc-ice==3.6.5 01:01:34 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:01:36 Installing collected packages: zeroc-ice 01:01:37 Successfully installed zeroc-ice-3.6.5 01:01:37 + pip install -U pip future 01:01:38 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 01:01:38 Collecting pip 01:01:38 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 01:01:39 Collecting future 01:01:39 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:01:39 Installing collected packages: pip, future 01:01:39 Attempting uninstall: pip 01:01:39 Found existing installation: pip 21.2.3 01:01:39 Uninstalling pip-21.2.3: 01:01:39 Successfully uninstalled pip-21.2.3 01:01:41 Successfully installed future-1.0.0 pip-24.2 01:01:42 + pip install markdown 01:01:42 Collecting markdown 01:01:42 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 01:01:42 Collecting importlib-metadata>=4.4 (from markdown) 01:01:42 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) 01:01:43 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 01:01:43 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB) 01:01:43 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 01:01:43 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) 01:01:43 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB) 01:01:43 Installing collected packages: zipp, importlib-metadata, markdown 01:01:43 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2 01:01:43 + pip install reportlab 01:01:44 Collecting reportlab 01:01:44 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 01:01:45 Collecting pillow>=9.0.0 (from reportlab) 01:01:45 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 01:01:45 Collecting chardet (from reportlab) 01:01:45 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 01:01:45 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 01:01:45 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 01:01:45 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 01:01:45 Installing collected packages: pillow, chardet, reportlab 01:01:47 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 01:01:48 + pip install omego 01:01:49 Collecting omego 01:01:49 Using cached omego-0.7.0-py3-none-any.whl 01:01:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 01:01:49 Collecting yaclifw>=0.1.1 (from omego) 01:01:49 Using cached yaclifw-0.2.0-py3-none-any.whl 01:01:49 Collecting six (from yaclifw>=0.1.1->omego) 01:01:49 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 01:01:49 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 01:01:49 Installing collected packages: six, yaclifw, omego 01:01:49 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 01:01:49 + pip install tables 01:01:50 Collecting tables 01:01:50 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 01:01:51 Collecting numpy>=1.19.0 (from tables) 01:01:51 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 01:01:51 Collecting numexpr>=2.6.2 (from tables) 01:01:51 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 01:01:51 Collecting packaging (from tables) 01:01:51 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 01:01:51 Collecting py-cpuinfo (from tables) 01:01:52 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:01:52 Collecting blosc2>=2.3.0 (from tables) 01:01:52 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 01:01:52 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 01:01:52 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 01:01:52 Collecting msgpack (from blosc2>=2.3.0->tables) 01:01:52 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 01:01:52 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 01:01:52 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 01:01:52 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 01:01:53 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 01:01:53 Using cached packaging-24.1-py3-none-any.whl (53 kB) 01:01:53 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:01:53 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 01:01:53 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 01:01:53 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 01:01:59 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 01:01:59 + pip install jinja2 01:02:00 Collecting jinja2 01:02:00 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 01:02:00 Collecting MarkupSafe>=2.0 (from jinja2) 01:02:00 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 01:02:00 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 01:02:00 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 01:02:00 Installing collected packages: MarkupSafe, jinja2 01:02:01 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 01:02:02 + pip install omero-py 01:02:02 Collecting omero-py 01:02:02 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB) 01:02:02 Collecting urllib3<2 (from omero-py) 01:02:02 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 01:02:02 Collecting appdirs (from omero-py) 01:02:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:02:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:02:03 Collecting numpy<2 (from omero-py) 01:02:03 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 01:02:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 01:02:03 Collecting PyYAML (from omero-py) 01:02:03 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 01:02:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:02:03 Collecting requests (from omero-py) 01:02:03 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 01:02:03 Collecting portalocker (from omero-py) 01:02:03 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 01:02:04 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 01:02:04 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 01:02:04 Collecting idna<4,>=2.5 (from requests->omero-py) 01:02:04 Downloading idna-3.9-py3-none-any.whl.metadata (10 kB) 01:02:04 Collecting certifi>=2017.4.17 (from requests->omero-py) 01:02:04 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) 01:02:04 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB) 01:02:04 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 01:02:05 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 01:02:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:02:05 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 01:02:05 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 01:02:05 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 01:02:05 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) 01:02:05 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 01:02:05 Downloading idna-3.9-py3-none-any.whl (71 kB) 01:02:05 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 01:02:06 Attempting uninstall: numpy 01:02:06 Found existing installation: numpy 2.0.2 01:02:06 Uninstalling numpy-2.0.2: 01:02:06 Successfully uninstalled numpy-2.0.2 01:02:12 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.9 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20 01:02:12 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:02:13 Collecting omero-metadata 01:02:13 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-cafr57t2/omero-metadata_ab08157a3b584e3bad7c9a21876b02da 01:02:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-cafr57t2/omero-metadata_ab08157a3b584e3bad7c9a21876b02da 01:02:14 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a71a986c2306758e4dc12833949076d9ea400a17 01:02:14 Installing build dependencies: started 01:02:17 Installing build dependencies: finished with status 'done' 01:02:17 Getting requirements to build wheel: started 01:02:17 Getting requirements to build wheel: finished with status 'done' 01:02:17 Preparing metadata (pyproject.toml): started 01:02:17 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:17 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4) 01:02:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 01:02:17 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 01:02:18 Collecting pandas (from omero-metadata) 01:02:18 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 01:02:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 01:02:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:02:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:02:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 01:02:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 01:02:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:02:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 01:02:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 01:02:18 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 01:02:18 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 01:02:18 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:02:18 Collecting pytz>=2020.1 (from pandas->omero-metadata) 01:02:18 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 01:02:18 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 01:02:18 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 01:02:18 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 01:02:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 01:02:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.9) 01:02:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30) 01:02:18 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 01:02:18 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:02:18 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) 01:02:18 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 01:02:19 Building wheels for collected packages: omero-metadata 01:02:19 Building wheel for omero-metadata (pyproject.toml): started 01:02:19 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:02:19 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39188 sha256=66ac700cf736e93552f63660eedd2cd71e72d0232a94f87fda9f7c50bf931a13 01:02:19 Stored in directory: /tmp/pip-ephem-wheel-cache-nj0fctqj/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 01:02:19 Successfully built omero-metadata 01:02:19 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 01:02:27 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1 01:02:27 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:02:28 Collecting omero-cli-render 01:02:28 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-sd2_oc7s/omero-cli-render_958561840bf04291b600c80db6c567c0 01:02:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-sd2_oc7s/omero-cli-render_958561840bf04291b600c80db6c567c0 01:02:32 Running command git checkout -b merge_ci --track origin/merge_ci 01:02:33 Switched to a new branch 'merge_ci' 01:02:33 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:02:33 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2f3c4a1ec42355429cd9cf72e43dd04aaa5a97a5 01:02:33 Installing build dependencies: started 01:02:35 Installing build dependencies: finished with status 'done' 01:02:35 Getting requirements to build wheel: started 01:02:36 Getting requirements to build wheel: finished with status 'done' 01:02:36 Preparing metadata (pyproject.toml): started 01:02:36 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 01:02:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4) 01:02:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 01:02:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:02:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:02:36 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 01:02:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 01:02:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:02:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 01:02:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 01:02:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 01:02:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.9) 01:02:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30) 01:02:36 Building wheels for collected packages: omero-cli-render 01:02:36 Building wheel for omero-cli-render (pyproject.toml): started 01:02:37 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:02:37 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18030 sha256=55f951f9e95054f540837db5de935cfe1b05156f40d0c0ed62f7aea078526d82 01:02:37 Stored in directory: /tmp/pip-ephem-wheel-cache-c1u2h8xk/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 01:02:37 Successfully built omero-cli-render 01:02:37 Installing collected packages: omero-cli-render 01:02:38 Successfully installed omero-cli-render-0.8.2.dev0 01:02:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:02:38 Collecting omero-cli-duplicate 01:02:38 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-t2_kl66o/omero-cli-duplicate_f3419a1b1f944c3a96a4437f5b13941a 01:02:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-t2_kl66o/omero-cli-duplicate_f3419a1b1f944c3a96a4437f5b13941a 01:02:39 Running command git checkout -b merge_ci --track origin/merge_ci 01:02:39 Switched to a new branch 'merge_ci' 01:02:39 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:02:39 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 07841e1dfabcb2e7cbcf8583909a1434c08c2563 01:02:39 Installing build dependencies: started 01:02:42 Installing build dependencies: finished with status 'done' 01:02:42 Getting requirements to build wheel: started 01:02:42 Getting requirements to build wheel: finished with status 'done' 01:02:42 Preparing metadata (pyproject.toml): started 01:02:43 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:43 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4) 01:02:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 01:02:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:02:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:02:43 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 01:02:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 01:02:43 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 01:02:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:02:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 01:02:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 01:02:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 01:02:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.9) 01:02:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30) 01:02:43 Building wheels for collected packages: omero-cli-duplicate 01:02:43 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:02:43 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:02:43 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=915f9dba74b9b6037ed409eebf2fa089f7db3c2c7c57889380a585f964c9c6e2 01:02:43 Stored in directory: /tmp/pip-ephem-wheel-cache-_3d451iu/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 01:02:43 Successfully built omero-cli-duplicate 01:02:43 Installing collected packages: omero-cli-duplicate 01:02:43 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:02:43 + pip install omero-certificates 01:02:44 Collecting omero-certificates 01:02:44 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 01:02:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4) 01:02:44 Collecting distro==1.8.0 (from omero-certificates) 01:02:44 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 01:02:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 01:02:44 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:02:44 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:02:44 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 01:02:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 01:02:44 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 01:02:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:02:44 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 01:02:44 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 01:02:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 01:02:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.9) 01:02:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30) 01:02:44 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 01:02:44 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 01:02:44 Installing collected packages: distro, omero-certificates 01:02:44 Successfully installed distro-1.8.0 omero-certificates-0.3.2 01:02:44 + for x in *.tar.gz 01:02:44 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:02:45 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:02:45 Installing build dependencies: started 01:02:47 Installing build dependencies: finished with status 'done' 01:02:47 Getting requirements to build wheel: started 01:02:47 Getting requirements to build wheel: finished with status 'done' 01:02:47 Preparing metadata (pyproject.toml): started 01:02:48 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:48 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4) 01:02:48 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 01:02:48 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:02:48 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:02:48 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 01:02:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 01:02:48 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 01:02:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:02:48 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 01:02:48 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 01:02:48 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 01:02:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.9) 01:02:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30) 01:02:48 Building wheels for collected packages: omero-dropbox 01:02:48 Building wheel for omero-dropbox (pyproject.toml): started 01:02:48 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:02:48 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49055 sha256=4e15ff56c60499643d40182392dc0982b8068b81190fdfe47542d7d57c01fe55 01:02:48 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 01:02:48 Successfully built omero-dropbox 01:02:48 Installing collected packages: omero-dropbox 01:02:48 Successfully installed omero-dropbox-5.7.1.dev0 01:02:49 + for x in *.tar.gz 01:02:49 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 01:02:49 Processing ./omero_marshal-0.9.1.dev0.tar.gz 01:02:49 Installing build dependencies: started 01:02:51 Installing build dependencies: finished with status 'done' 01:02:51 Getting requirements to build wheel: started 01:02:52 Getting requirements to build wheel: finished with status 'done' 01:02:52 Preparing metadata (pyproject.toml): started 01:02:52 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:52 Building wheels for collected packages: omero_marshal 01:02:52 Building wheel for omero_marshal (pyproject.toml): started 01:02:52 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:02:52 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=2b90452d2bc687bf314454b18c0080ce2d76f01802600178b3995e603be89dc0 01:02:52 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 01:02:52 Successfully built omero_marshal 01:02:53 Installing collected packages: omero_marshal 01:02:53 Successfully installed omero_marshal-0.9.1.dev0 01:02:53 + for x in *.tar.gz 01:02:53 + pip install -U omero_py-5.19.5.dev0.tar.gz 01:02:53 Processing ./omero_py-5.19.5.dev0.tar.gz 01:02:54 Installing build dependencies: started 01:02:56 Installing build dependencies: finished with status 'done' 01:02:56 Getting requirements to build wheel: started 01:02:56 Getting requirements to build wheel: finished with status 'done' 01:02:56 Preparing metadata (pyproject.toml): started 01:02:57 Preparing metadata (pyproject.toml): finished with status 'done' 01:02:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.20) 01:02:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4) 01:02:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0) 01:02:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4) 01:02:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0) 01:02:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2) 01:02:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5) 01:02:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3) 01:02:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1) 01:02:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2) 01:02:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.9) 01:02:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.8.30) 01:02:57 Building wheels for collected packages: omero-py 01:02:57 Building wheel for omero-py (pyproject.toml): started 01:02:58 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:02:58 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=26f577b382296d5cb66cf8bdef832dc1c61c799687ec31c730f7d428aca91dd5 01:02:58 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16 01:02:58 Successfully built omero-py 01:02:58 Installing collected packages: omero-py 01:02:58 Attempting uninstall: omero-py 01:02:58 Found existing installation: omero-py 5.19.4 01:02:58 Uninstalling omero-py-5.19.4: 01:02:59 Successfully uninstalled omero-py-5.19.4 01:03:01 Successfully installed omero-py-5.19.5.dev0 01:03:01 + for x in *.tar.gz 01:03:01 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 01:03:02 Processing ./omero_scripts-5.8.4.dev0.tar.gz 01:03:02 Installing build dependencies: started 01:03:04 Installing build dependencies: finished with status 'done' 01:03:04 Getting requirements to build wheel: started 01:03:05 Getting requirements to build wheel: finished with status 'done' 01:03:05 Preparing metadata (pyproject.toml): started 01:03:05 Preparing metadata (pyproject.toml): finished with status 'done' 01:03:05 Building wheels for collected packages: omero-scripts 01:03:05 Building wheel for omero-scripts (pyproject.toml): started 01:03:05 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:03:05 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=0f9dc17deb9c9473fb4f6480641f9e933856de85c2de16ebf792a1901a766ea9 01:03:05 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 01:03:05 Successfully built omero-scripts 01:03:06 Installing collected packages: omero-scripts 01:03:06 Successfully installed omero-scripts-5.8.4.dev0 01:03:06 + for x in *.tar.gz 01:03:06 + pip install -U omero_web-5.27.3.dev0.tar.gz 01:03:07 Processing ./omero_web-5.27.3.dev0.tar.gz 01:03:07 Installing build dependencies: started 01:03:11 Installing build dependencies: finished with status 'done' 01:03:11 Getting requirements to build wheel: started 01:03:11 Getting requirements to build wheel: finished with status 'done' 01:03:11 Preparing metadata (pyproject.toml): started 01:03:11 Preparing metadata (pyproject.toml): finished with status 'done' 01:03:11 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.5.dev0) 01:03:12 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0) 01:03:12 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 01:03:12 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0) 01:03:12 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB) 01:03:12 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0) 01:03:12 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 01:03:12 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0) 01:03:12 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:03:12 Collecting django-csp (from omero-web==5.27.3.dev0) 01:03:12 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 01:03:12 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0) 01:03:12 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 01:03:13 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0) 01:03:13 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 01:03:13 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0) 01:03:13 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0) 01:03:13 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2) 01:03:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1) 01:03:13 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1) 01:03:13 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 01:03:13 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 01:03:13 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 01:03:13 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 01:03:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20) 01:03:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4) 01:03:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0) 01:03:13 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4) 01:03:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2) 01:03:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5) 01:03:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3) 01:03:13 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 01:03:13 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 01:03:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2) 01:03:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.9) 01:03:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30) 01:03:13 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:03:13 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 01:03:13 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 01:03:13 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB) 01:03:14 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 01:03:14 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 01:03:14 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 01:03:14 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 01:03:14 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 01:03:14 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 01:03:14 Building wheels for collected packages: omero-web 01:03:14 Building wheel for omero-web (pyproject.toml): started 01:03:15 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:03:15 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=d093a7c87005d79fdbf7aa20c05e2c35722c0458f8d70115aaebb2fe552bc978 01:03:15 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b 01:03:15 Successfully built omero-web 01:03:16 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 01:03:20 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 01:03:20 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:03:21 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:03:21 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:03:21 --2024-09-15 01:03:21-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:03:22 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.108.133, ... 01:03:22 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 01:03:22 HTTP request sent, awaiting response... 200 OK 01:03:22 Length: 98962 (97K) [text/plain] 01:03:22 Saving to: ‘Figure_To_Pdf.py’ 01:03:22 01:03:22 0K .......... .......... .......... .......... .......... 51% 1.74M 0s 01:03:22 50K .......... .......... .......... .......... ...... 100% 8.04M=0.03s 01:03:22 01:03:22 2024-09-15 01:03:22 (2.80 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962] 01:03:22 01:03:22 + chmod 755 Figure_To_Pdf.py 01:03:22 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:03:22 + omero config set omero.db.name OMERO-server 01:03:25 + omero config set omero.db.host pg 01:03:27 + omero config set omero.db.user postgres 01:03:29 + omero config set omero.data.dir /home/omero/omero-server-data 01:03:32 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:03:34 + omero config set omero.db.poolsize 25 01:03:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:03:39 + omero config set omero.security.trustStorePassword changeit 01:03:41 + omero config set omero.mail.config true 01:03:43 + omero config set omero.mail.from qa@openmicroscopy.org.uk 01:03:46 + omero config set omero.mail.host smtp.dundee.ac.uk 01:03:48 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:03:50 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 01:03:53 + omero certificates 01:03:55 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 01:03:55 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:03:56 + '[' false = true ']' 01:03:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:03:56 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:03:56 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG dbcommand => upgrade 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG dbhost => localhost 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG dbname => OMERO-server 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG dbpass => omero 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG dbuser => omero 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG rootpass => omero 01:03:56 2024-09-15 01:03:56,413 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:03:56 2024-09-15 01:03:56,413 [omego.extern] INFO Executing : omero version 01:03:58 OMERO.py version: 01:03:58 OMERO.server version: 01:03:58 5.6.3-505-910aa6dca9-ice36 01:03:58 5.19.5.dev0 01:03:59 2024-09-15 01:03:59,031 [omego.extern] INFO Completed [2.618 s] 01:03:59 2024-09-15 01:03:59,031 [omego.extern] DEBUG Using omero CLI from omero 01:03:59 2024-09-15 01:03:59,031 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 01:03:59 2024-09-15 01:03:59,032 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:03:59 2024-09-15 01:03:59,032 [omego.extern] INFO Executing : omero config get --show-password 01:04:01 2024-09-15 01:04:01,473 [omego.extern] INFO Completed [2.442 s] 01:04:01 2024-09-15 01:04:01,474 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:04:01 2024-09-15 01:04:01,474 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 01:04:01 2024-09-15 01:04:01,704 [omego.extern] INFO Completed [0.229 s] 01:04:01 2024-09-15 01:04:01,704 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 01:04:01 2024-09-15 01:04:01,704 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 01:04:01 01:04:01 2024-09-15 01:04:01,704 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:04:01 2024-09-15 01:04:01,705 [omego.extern] INFO Executing : omero config get --show-password 01:04:04 2024-09-15 01:04:04,004 [omego.extern] INFO Completed [2.299 s] 01:04:04 2024-09-15 01:04:04,004 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:04:04 2024-09-15 01:04:04,005 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 01:04:04 2024-09-15 01:04:04,489 [omego.extern] INFO Completed [0.484 s] 01:04:04 2024-09-15 01:04:04,489 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 01:04:04 2024-09-15 01:04:04,489 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:04:04 2024-09-15 01:04:04,490 [omego.extern] INFO Running [current environment]: omero config get --show-password 01:04:04 2024-09-15 01:04:04,490 [omego.extern] INFO Executing : omero config get --show-password 01:04:06 2024-09-15 01:04:06,943 [omego.extern] INFO Completed [2.453 s] 01:04:06 2024-09-15 01:04:06,943 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 01:04:06 2024-09-15 01:04:06,944 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 01:04:07 2024-09-15 01:04:07,250 [omego.extern] INFO Completed [0.307 s] 01:04:07 2024-09-15 01:04:07,251 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 01:04:07 2024-09-15 01:04:07,251 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 01:04:07 2024-09-15 01:04:07,253 [ omego.db] INFO Database is already at OMERO5.4__0 01:04:07 + export LANG=en_US.UTF-8 01:04:07 + LANG=en_US.UTF-8 01:04:07 + export LANGUAGE=en_US:en 01:04:07 + LANGUAGE=en_US:en 01:04:07 + export LC_ALL=en_US.UTF-8 01:04:07 + LC_ALL=en_US.UTF-8 01:04:07 + BUILD_ID=DONT_KILL_ME 01:04:07 + omero admin start 01:04:23 No descriptor given. Using etc/grid/default.xml 01:04:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 01:04:41 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 01:04:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 01:04:41 Waiting on startup. Use CTRL-C to exit 01:04:41 + omero admin waitup 01:04:44 Waiting on startup. Use CTRL-C to exit 01:04:45 + omero admin diagnostics 01:04:47 01:04:47 ================================================================================ 01:04:47 OMERO Diagnostics (admin) 01:04:47 ================================================================================ 01:04:47 01:04:47 Commands: java -version 11.0.22 (/usr/bin/java) 01:04:47 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 01:04:47 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 01:04:47 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 01:04:47 Commands: psql --version 16.2 (/usr/bin/psql) 01:04:47 Commands: openssl version 3.0.71 (/usr/bin/openssl) 01:04:47 01:04:47 Component: OMERO.py 5.19.5.dev0 01:04:47 Component: OMERO.server 5.6.3-505-910aa6dca9-ice36 01:04:47 01:04:47 Server: icegridnode running 01:04:47 Server: Blitz-0 active (pid = 63397, enabled) 01:04:48 Server: Indexer-0 active (pid = 63422, enabled) 01:04:48 Server: OMERO.Glacier2 active (pid = 63418, enabled) 01:04:48 Server: OMERO.IceStorm active (pid = 63440, enabled) 01:04:48 Server: Processor-0 activating (enabled) 01:04:48 Server: Tables-0 activating (enabled) 01:04:48 01:04:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 01:04:48 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 01:04:48 Log files: DropBox.log n/a 01:04:48 Log files: FileServer.log n/a 01:04:48 Log files: Indexer-0.log 2.6 KB 01:04:48 Log files: MonitorServer.log n/a 01:04:48 Log files: Processor-0.log 592 B 01:04:48 Log files: Tables-0.log 841 B 01:04:48 Log files: TestDropBox.log n/a 01:04:48 Log files: master.err 180 B 01:04:48 Log files: master.out 30.1 KB 01:04:48 Log files: Total size 0.06 MB 01:04:48 01:04:48 01:04:48 Environment:OMERO_HOME=(unset) 01:04:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:04:48 Environment:OMERO_NODE=(unset) 01:04:48 Environment:OMERO_MASTER=(unset) 01:04:48 Environment:OMERO_USERDIR=(unset) 01:04:48 Environment:OMERO_TMPDIR=(unset) 01:04:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:48 Environment:PYTHONPATH=(unset) 01:04:48 Environment:ICE_HOME=/opt/ice-3.6.5 01:04:48 Environment:LD_LIBRARY_PATH=(unset) 01:04:48 Environment:DYLD_LIBRARY_PATH=(unset) 01:04:48 01:04:48 OMERO SSL port:4064 01:04:48 OMERO TCP port:4063 01:04:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 01:04:48 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 01:04:48 01:04:48 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:04:48 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:04:48 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:04:48 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 01:04:48 01:04:48 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 15 September 2024 a58cb8ac1cf5cc82299a0c28f28c86e4f831f6c5 01:04:48 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 15 September 2024 a58cb8ac1cf5cc82299a0c28f28c86e4f831f6c5 01:04:48 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 15 September 2024 a58cb8ac1cf5cc82299a0c28f28c86e4f831f6c5 01:04:48 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 15 September 2024 2a86ba08921d4b3c2e281b76d2904bfe2859ed6a 01:04:48 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 01:04:48 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 01:04:48 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT 01:04:48 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 01:04:48 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 01:04:48 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 01:04:48 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 01:04:48 + deactivate 01:04:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:04:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:04:48 + export PATH 01:04:48 + unset _OLD_VIRTUAL_PATH 01:04:48 + '[' -n '' ']' 01:04:48 + '[' -n /bin/bash -o -n '' ']' 01:04:48 + hash -r 01:04:48 + '[' -n '' ']' 01:04:48 + unset VIRTUAL_ENV 01:04:48 + '[' '!' '' = nondestructive ']' 01:04:48 + unset -f deactivate 01:04:48 Finished: SUCCESS