Started by upstream project "Trigger" build number 217
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
[OMERO-server] $ /bin/bash -xe /tmp/jenkins7104131415631084709.sh
+ source /home/settings.env
++ OMERO_DB_HOST=pg
++ OMERO_DB_USER=postgres
++ OMERO_DB_PASS=
++ OMERO_ROOT_PASS=omero
++ OMERO_DATA_DIR=/OMERO
++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
+ OMERO_DB_NAME=OMERO-server
+ OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
+ export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
+ OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
+ OMERO_DATA_DIR=/home/omero/omero-server-data
+ '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
+ source /home/omero/workspace/OMERO-server/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ omero admin stop
Server not running
+ echo not running
not running
+ sleep 5
+ deactivate
+ '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ '[' -n '' ']'
+ '[' -n /bin/bash -o -n '' ']'
+ hash -r
+ '[' -n '' ']'
+ unset VIRTUAL_ENV
+ '[' '!' '' = nondestructive ']'
+ unset -f deactivate
+ rm -rf /home/omero/workspace/OMERO-server/.venv3
+ python3 -m venv /home/omero/workspace/OMERO-server/.venv3
+ '[' false = true ']'
+ echo 'Skipping PURGE_DATA:CleanDbAndRepo'
Skipping PURGE_DATA:CleanDbAndRepo
+ rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
Copied 1 artifact from "OMERO-build" build number 182
Copied 5 artifacts from "OMERO-python-superbuild-build" build number 179
Copied 2 artifacts from "OMERO-build-build" build number 187
[OMERO-server] $ /bin/bash -xe /tmp/jenkins16733049762664647673.sh
+ source /home/settings.env
++ OMERO_DB_HOST=pg
++ OMERO_DB_USER=postgres
++ OMERO_DB_PASS=
++ OMERO_ROOT_PASS=omero
++ OMERO_DATA_DIR=/OMERO
++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
+ OMERO_DB_NAME=OMERO-server
+ OMERO_DATA_DIR=/home/omero/omero-server-data
+ mkdir -p /home/omero/omero-server-data
+ OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
+ export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
+ OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
+ export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
+ ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
+ export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
+ VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
++ ls OMERO.server-5.6.3-510-9780907658-ice36.zip
+ ZIP=OMERO.server-5.6.3-510-9780907658-ice36.zip
+ '[' '!' -z '' ']'
+ DIST=OMERO.server-5.6.3-510-9780907658-ice36
+ unzip OMERO.server-5.6.3-510-9780907658-ice36.zip
Archive: OMERO.server-5.6.3-510-9780907658-ice36.zip
creating: OMERO.server-5.6.3-510-9780907658-ice36/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/grid/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/profiles/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/error/
creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/janelia/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/import_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/
creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/
creating: OMERO.server-5.6.3-510-9780907658-ice36/share/
creating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__1/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__10/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__2/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__5/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__6/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__7/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__8/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__9/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__4/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__5/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__6/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__7/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.1__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__1/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__2/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__3/
creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/
creating: OMERO.server-5.6.3-510-9780907658-ice36/var/
inflating: OMERO.server-5.6.3-510-9780907658-ice36/LICENSE.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/backup.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/mail-senders.example
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/mail-server.example
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/build.properties
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/env.bat
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/env.sh
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/hibernate.properties
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/ice.config
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-cli.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-indexing-cli.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-indexing.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/mime.types
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/node1.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/node2.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/omero.properties
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/profiles/psql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/rollover.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/Windows.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/error/maintainance.html
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/README
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/default.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/templates.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/windefault.xml
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/ice.config
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/internal.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/master.cfg
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/robot.template
inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/testdropbox.config
inflating: OMERO.server-5.6.3-510-9780907658-ice36/history.rst
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/OMEZarrReader.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/activation.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aggdesigner-algorithm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aircompressor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/antlr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aopalliance.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/avatica-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/avatica-metrics.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-kms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-s3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/base.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-anim.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-awt-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-bridge.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-codec.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-constants.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-css.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-dom.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-extension.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-gui-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-gvt.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-i18n.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-parser.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-rasterizer-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-rasterizer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-script.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-slideshow.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-squiggle-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-squiggle.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svg-dom.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgbrowser.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svggen.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgpp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgrasterizer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-swing.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-transcoder.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-ttf2svg.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/btm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/bufr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/c3p0.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/calcite-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/calcite-linq4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/cdm-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/checker-qual.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-beanutils.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-codec.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-collections.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-collections4.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-compiler.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-dbcp2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-io.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-lang.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-lang3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-logging.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-pool2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/dom4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ehcache.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/error_prone_annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/esri-geometry-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/failureaccess.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/filters.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/fontbox.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/formats-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/formats-bsd.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/formats-gpl.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/glacier2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/google-http-client-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/google-http-client.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/guava.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hamcrest-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hazelcast-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hibernate-commons-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hibernate-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hibernate-jpa-2.0-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hibernate-search-analyzers.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/hibernate-search.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/httpclient.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/httpcore.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/httpmime.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/httpservices.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ice.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/icegrid.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/icestorm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ini4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/j2objc-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jackson-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jackson-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jackson-databind.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jackson-dataformat-cbor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jackson-dataformat-yaml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jamon.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/janino.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/java-getopt.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/java-image-scaling.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/javassist.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/javax.activation.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/javax.mail.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jblosc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jcip-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jcl-over-slf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jgoodies-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jgoodies-forms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jhdf5.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jmespath-java.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jna.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/joda-time.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/json-path.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/json.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jta.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jul-to-slf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/junit.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jxrlib-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jython.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/jzarr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/kryo.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/listenablefuture.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/logback-classic.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/logback-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-analyzers.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-highlighter.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-memory.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-misc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-smartcn.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-spatial.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-spellchecker.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/lucene-stempel.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/memory.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metadata-extractor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metakit.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metrics-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metrics-graphite.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metrics-jvm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/metrics-logback.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/minio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/minlog.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/native-lib-loader.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/objenesis.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/okhttp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/okio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-codecs.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-jai.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-mdbtools.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-poi.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/ome-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-blitz.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-gateway.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-model.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-renderer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-romio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/omero-server.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/pdfbox.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/perf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/postgresql.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/protobuf-java.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/quartz.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/re2j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/reflectasm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/rhino.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/serializer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/sketches-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/slf4j-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/snakeyaml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/solr-analysis-extras.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/solr-commons-csv.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/solr-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/solr-solrj.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/specification.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-aop.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-beans.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-context-support.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-context.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-expression.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-jdbc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-jms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-ldap-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-messaging.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-orm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-security-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-security-ldap.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/spring-tx.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/sqlite-jdbc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/subethasmtp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/turbojpeg.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/udunits.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xalan.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xercesImpl.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xml-apis-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xml-apis.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xmlgraphics-commons.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xmpcore.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/xpp3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/README.rst
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/3-3-2_rgb.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/fire.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/glasbey.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/glasbey_inverted.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/glow.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/grays.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ice.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/janelia/pup_br.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/janelia/pup_nr.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/16_colors.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/5_ramps.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/6_shades.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/blue_orange_icb.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/brgbcmyw.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/cool.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/edges.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/gem.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/phase.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/royal.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/sepia.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/smart.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/thal.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/thallium.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/unionjack.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/physics.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/red-green.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/spectrum.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/thermal.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/cyan_hot.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/green_fire_blue.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/hilo.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/ica.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/ica2.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/ica3.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/magenta_hot.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/orange_hot.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/rainbow_rgb.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/red_hot.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/yellow_hot.lut
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/Kymograph.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/Kymograph_Analysis.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/Plot_Profile.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/KeyVal_from_csv.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/KeyVal_to_csv.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/Remove_KeyVal.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/Batch_Image_Export.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/Batch_ROI_Export.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/Make_Movie.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/Movie_Figure.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/Movie_ROI_Figure.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/ROI_Split_Figure.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/Split_View_Figure.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/Thumbnail_Figure.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/import_scripts/Populate_Metadata.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/import_scripts/Populate_ROI.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/import_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/Channel_Offsets.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/Combine_Images.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/Dataset_To_Plate.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/Images_From_ROIs.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/Move_Annotations.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/__init__.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/OMEZarrReader.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/activation.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aggdesigner-algorithm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aircompressor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/antlr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aopalliance.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/avatica-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/avatica-metrics.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aws-java-sdk-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aws-java-sdk-kms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/aws-java-sdk-s3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/base.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-anim.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-awt-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-bridge.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-codec.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-constants.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-css.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-dom.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-extension.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-gui-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-gvt.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-i18n.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-parser.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-rasterizer-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-rasterizer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-script.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-slideshow.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-squiggle-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-squiggle.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-svg-dom.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-svgbrowser.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-svggen.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-svgpp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-svgrasterizer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-swing.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-transcoder.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-ttf2svg.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-util.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/batik-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/btm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/bufr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/c3p0.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/calcite-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/calcite-linq4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/cdm-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/checker-qual.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-beanutils.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-codec.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-collections.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-collections4.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-compiler.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-dbcp2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-io.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-lang.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-lang3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-logging.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/commons-pool2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/dom4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ehcache.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/error_prone_annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/esri-geometry-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/failureaccess.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/filters.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/fontbox.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/formats-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/formats-bsd.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/formats-gpl.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/glacier2.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/google-http-client-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/google-http-client.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/guava.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hamcrest-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hazelcast-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hibernate-commons-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hibernate-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hibernate-jpa-2.0-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hibernate-search-analyzers.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/hibernate-search.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/httpclient.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/httpcore.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/httpmime.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/httpservices.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ice.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/icegrid.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/icestorm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ini4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/j2objc-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jackson-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jackson-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jackson-databind.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jackson-dataformat-cbor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jackson-dataformat-yaml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jamon.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/janino.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/java-getopt.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/java-image-scaling.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/javassist.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/javax.activation.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/javax.mail.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jblosc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jcip-annotations.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jcl-over-slf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jgoodies-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jgoodies-forms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jhdf5.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jmespath-java.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jna.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/joda-time.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/json-path.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/json.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jta.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jul-to-slf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/junit.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jxrlib-all.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jython.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/jzarr.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/kryo.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/listenablefuture.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/logback-classic.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/logback-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-analyzers.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-highlighter.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-memory.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-misc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-smartcn.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-spatial.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-spellchecker.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/lucene-stempel.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/memory.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metadata-extractor.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metakit.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metrics-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metrics-graphite.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metrics-jvm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/metrics-logback.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/minio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/minlog.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/native-lib-loader.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/objenesis.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/okhttp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/okio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-codecs.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-jai.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-mdbtools.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-poi.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/ome-xml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-blitz.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-common.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-gateway.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-model.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-renderer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-romio.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/omero-server.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/pdfbox.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/perf4j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/postgresql.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/protobuf-java.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/quartz.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/re2j.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/reflectasm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/rhino.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/serializer.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/sketches-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/slf4j-api.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/snakeyaml.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/solr-analysis-extras.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/solr-commons-csv.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/solr-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/solr-solrj.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/specification.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-aop.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-beans.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-context-support.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-context.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-expression.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-jdbc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-jms.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-ldap-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-messaging.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-orm.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-security-core.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-security-ldap.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-tx.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/sqlite-jdbc.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/subethasmtp.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/turbojpeg.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/udunits.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xalan.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xercesImpl.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xml-apis-ext.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xml-apis.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xmlgraphics-commons.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xmpcore.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xpp3.jar
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/README
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/agpl.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/antlr.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/apache-v1.1.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/apache-v2.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/asm.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/bouncy_castle_license.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/bsd.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/cddl-v1.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/cpl-v10.html
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/crystalclear.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/django.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/dom4j.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/epl-v1.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/fbsd.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/freemarker.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gpl-v2.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gpl.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gtest.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/iconsweets_license.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jamon.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jmock.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jquery.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jtidy.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-3.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v2.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v2.1.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v3.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/matplotlib.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/mit.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/mpl-v1_0.htm
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/npl-1_1.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/path.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/pil.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/postgresql.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/psf-v2.0.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/psf-v2.5.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/scons.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/slf4j.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/tablelayout.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/which.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/zlib-libpng.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/zpl-v2.1.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/README.txt
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/Makefile
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/current.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/enums.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/psql-header.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/schema.sql
inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/views.sql
+ rm -f OMERO.server-5.6.3-510-9780907658-ice36.zip
+ mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-510-9780907658-ice36 /home/omero/workspace/OMERO-server/OMERO.server
+ source /home/omero/workspace/OMERO-server/.venv3/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(.venv3) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
Collecting zeroc-ice==3.6.5
Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
Installing collected packages: zeroc-ice
Successfully installed zeroc-ice-3.6.5
+ pip install -U pip future
Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
Collecting pip
Using cached pip-24.2-py3-none-any.whl (1.8 MB)
Collecting future
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Installing collected packages: pip, future
Attempting uninstall: pip
Found existing installation: pip 21.2.3
Uninstalling pip-21.2.3:
Successfully uninstalled pip-21.2.3
Successfully installed future-1.0.0 pip-24.2
+ pip install markdown
Collecting markdown
Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
Collecting importlib-metadata>=4.4 (from markdown)
Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
Using cached Markdown-3.7-py3-none-any.whl (106 kB)
Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
Installing collected packages: zipp, importlib-metadata, markdown
Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
+ pip install reportlab
Collecting reportlab
Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
Collecting pillow>=9.0.0 (from reportlab)
Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
Collecting chardet (from reportlab)
Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
Installing collected packages: pillow, chardet, reportlab
Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
+ pip install omego
Collecting omego
Using cached omego-0.7.0-py3-none-any.whl
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
Collecting yaclifw>=0.1.1 (from omego)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting six (from yaclifw>=0.1.1->omego)
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: six, yaclifw, omego
Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
+ pip install tables
Collecting tables
Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting numpy>=1.19.0 (from tables)
Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
Collecting numexpr>=2.6.2 (from tables)
Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
Collecting packaging (from tables)
Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting py-cpuinfo (from tables)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting blosc2>=2.3.0 (from tables)
Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
Collecting msgpack (from blosc2>=2.3.0->tables)
Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
Using cached packaging-24.1-py3-none-any.whl (53 kB)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
Using cached ndindex-1.8-py3-none-any.whl (91 kB)
Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
+ pip install jinja2
Collecting jinja2
Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting MarkupSafe>=2.0 (from jinja2)
Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Installing collected packages: MarkupSafe, jinja2
Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
+ pip install omero-py
Collecting omero-py
Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
Collecting urllib3<2 (from omero-py)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting appdirs (from omero-py)
Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
Collecting numpy<2 (from omero-py)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
Collecting PyYAML (from omero-py)
Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
Collecting requests (from omero-py)
Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting portalocker (from omero-py)
Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
Collecting charset-normalizer<4,>=2 (from requests->omero-py)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests->omero-py)
Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting certifi>=2017.4.17 (from requests->omero-py)
Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached idna-3.10-py3-none-any.whl (70 kB)
Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
Attempting uninstall: numpy
Found existing installation: numpy 2.0.2
Uninstalling numpy-2.0.2:
Successfully uninstalled numpy-2.0.2
Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
+ pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
Collecting omero-metadata
Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-39q9dcjd/omero-metadata_05f583d8487444879920a62c27819864
Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-39q9dcjd/omero-metadata_05f583d8487444879920a62c27819864
Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a0b418463838318f84d872eea8fdf09e25137b99
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
Collecting pandas (from omero-metadata)
Downloading pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pytz>=2020.1 (from pandas->omero-metadata)
Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas->omero-metadata)
Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
Downloading pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 7.7 MB/s eta 0:00:00
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
Building wheels for collected packages: omero-metadata
Building wheel for omero-metadata (pyproject.toml): started
Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=41c9215b3af63eaa47bcdb9bba06c6f26b26d4c2a39e1df6edb863985f5e3f94
Stored in directory: /tmp/pip-ephem-wheel-cache-44fg81p9/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
Successfully built omero-metadata
Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1
+ pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
Collecting omero-cli-render
Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-deo2yuj5/omero-cli-render_82993c46424a4e8d84438e560c49c8b4
Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-deo2yuj5/omero-cli-render_82993c46424a4e8d84438e560c49c8b4
Running command git checkout -b merge_ci --track origin/merge_ci
Switched to a new branch 'merge_ci'
branch 'merge_ci' set up to track 'origin/merge_ci'.
Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 755d00daa6ebb52e35d8803fcc62ada23772b373
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
Building wheels for collected packages: omero-cli-render
Building wheel for omero-cli-render (pyproject.toml): started
Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=16ffbf5c81f2fd719dc9ab3489a8bdb5fbe80e540c27ed9ce195eaa6f2ddb317
Stored in directory: /tmp/pip-ephem-wheel-cache-j0t81rw5/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
Successfully built omero-cli-render
Installing collected packages: omero-cli-render
Successfully installed omero-cli-render-0.8.2.dev0
+ pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
Collecting omero-cli-duplicate
Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-3zq4cl7z/omero-cli-duplicate_bdbe5ad98b6b42a18583e6bad9f19daf
Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-3zq4cl7z/omero-cli-duplicate_bdbe5ad98b6b42a18583e6bad9f19daf
Running command git checkout -b merge_ci --track origin/merge_ci
Switched to a new branch 'merge_ci'
branch 'merge_ci' set up to track 'origin/merge_ci'.
Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit ee98608ad9e08114957e3162de0d2b21e426b148
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
Building wheels for collected packages: omero-cli-duplicate
Building wheel for omero-cli-duplicate (pyproject.toml): started
Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=5a8b7b89050d1975c770b515888dda76528f8b86a9613e444428249010eae494
Stored in directory: /tmp/pip-ephem-wheel-cache-66rq4j9y/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
Successfully built omero-cli-duplicate
Installing collected packages: omero-cli-duplicate
Successfully installed omero-cli-duplicate-0.4.1.dev0
+ pip install omero-certificates
Collecting omero-certificates
Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
Collecting distro==1.8.0 (from omero-certificates)
Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
Using cached distro-1.8.0-py3-none-any.whl (20 kB)
Installing collected packages: distro, omero-certificates
Successfully installed distro-1.8.0 omero-certificates-0.3.2
+ for x in *.tar.gz
+ pip install -U omero_dropbox-5.7.1.dev0.tar.gz
Processing ./omero_dropbox-5.7.1.dev0.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
Building wheels for collected packages: omero-dropbox
Building wheel for omero-dropbox (pyproject.toml): started
Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=015f50075fd5644cba83e07cb674295b046e32337010048e4837692527b77c5e
Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
Successfully built omero-dropbox
Installing collected packages: omero-dropbox
Successfully installed omero-dropbox-5.7.1.dev0
+ for x in *.tar.gz
+ pip install -U omero_marshal-0.9.1.dev0.tar.gz
Processing ./omero_marshal-0.9.1.dev0.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero_marshal
Building wheel for omero_marshal (pyproject.toml): started
Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=574aa364fdb242a289eb6a3ee3d0683af0a5e4124b3dbd81b373bc0cd50748ec
Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
Successfully built omero_marshal
Installing collected packages: omero_marshal
Successfully installed omero_marshal-0.9.1.dev0
+ for x in *.tar.gz
+ pip install -U omero_py-5.19.6.dev0.tar.gz
Processing ./omero_py-5.19.6.dev0.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
Building wheels for collected packages: omero-py
Building wheel for omero-py (pyproject.toml): started
Building wheel for omero-py (pyproject.toml): finished with status 'done'
Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783136 sha256=2b45b428c50959006cc921b175c85c2e6fbdb70a7e698eb5f00e78e4522f3e7c
Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
Successfully built omero-py
Installing collected packages: omero-py
Attempting uninstall: omero-py
Found existing installation: omero-py 5.19.5
Uninstalling omero-py-5.19.5:
Successfully uninstalled omero-py-5.19.5
Successfully installed omero-py-5.19.6.dev0
+ for x in *.tar.gz
+ pip install -U omero_scripts-5.8.4.dev0.tar.gz
Processing ./omero_scripts-5.8.4.dev0.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: omero-scripts
Building wheel for omero-scripts (pyproject.toml): started
Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=9c38b08e46e25f9555a440290767c3c5bfb88669e4be001211b38932e3d1bc4a
Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
Successfully built omero-scripts
Installing collected packages: omero-scripts
Successfully installed omero-scripts-5.8.4.dev0
+ for x in *.tar.gz
+ pip install -U omero_web-5.27.3.dev0.tar.gz
Processing ./omero_web-5.27.3.dev0.tar.gz
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
Collecting django-csp (from omero-web==5.27.3.dev0)
Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
Using cached django_csp-3.8-py3-none-any.whl (17 kB)
Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Building wheels for collected packages: omero-web
Building wheel for omero-web (pyproject.toml): started
Building wheel for omero-web (pyproject.toml): finished with status 'done'
Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=163ab4985585040969d7713d08163bb75033e80f76d8a784f488380e21f0142a
Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
Successfully built omero-web
Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
+ wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
--2024-09-20 16:28:20-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 98962 (97K) [text/plain]
Saving to: ‘Figure_To_Pdf.py’
0K .......... .......... .......... .......... .......... 51% 2.14M 0s
50K .......... .......... .......... .......... ...... 100% 7.22M=0.03s
2024-09-20 16:28:21 (3.24 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
+ chmod 755 Figure_To_Pdf.py
+ mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
+ omero config set omero.db.name OMERO-server
+ omero config set omero.db.host pg
+ omero config set omero.db.user postgres
+ omero config set omero.data.dir /home/omero/omero-server-data
+ omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
+ omero config set omero.db.poolsize 25
+ omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
+ omero config set omero.security.trustStorePassword changeit
+ omero config set omero.mail.config true
+ omero config set omero.mail.from qa@openmicroscopy.org.uk
+ omero config set omero.mail.host smtp.dundee.ac.uk
+ omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
+ omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
+ omero certificates
OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
+ '[' false = true ']'
+ echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
+ omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
2024-09-20 16:28:56,362 [ omego.db] DEBUG dbcommand => upgrade
2024-09-20 16:28:56,362 [ omego.db] DEBUG dbhost => localhost
2024-09-20 16:28:56,362 [ omego.db] DEBUG dbname => OMERO-server
2024-09-20 16:28:56,362 [ omego.db] DEBUG dbpass => omero
2024-09-20 16:28:56,362 [ omego.db] DEBUG dbuser => omero
2024-09-20 16:28:56,362 [ omego.db] DEBUG rootpass => omero
2024-09-20 16:28:56,363 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
2024-09-20 16:28:56,363 [omego.extern] INFO Executing : omero version
OMERO.py version:
OMERO.server version:
5.6.3-510-9780907658-ice36
5.19.6.dev0
2024-09-20 16:28:58,797 [omego.extern] INFO Completed [2.434 s]
2024-09-20 16:28:58,797 [omego.extern] DEBUG Using omero CLI from omero
2024-09-20 16:28:58,797 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
2024-09-20 16:28:58,797 [omego.extern] INFO Running [current environment]: omero config get --show-password
2024-09-20 16:28:58,797 [omego.extern] INFO Executing : omero config get --show-password
2024-09-20 16:29:00,858 [omego.extern] INFO Completed [2.061 s]
2024-09-20 16:29:00,862 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
2024-09-20 16:29:00,865 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
2024-09-20 16:29:01,020 [omego.extern] INFO Completed [0.155 s]
2024-09-20 16:29:01,020 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
2024-09-20 16:29:01,021 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
2024-09-20 16:29:01,021 [omego.extern] INFO Running [current environment]: omero config get --show-password
2024-09-20 16:29:01,021 [omego.extern] INFO Executing : omero config get --show-password
2024-09-20 16:29:02,843 [omego.extern] INFO Completed [1.822 s]
2024-09-20 16:29:02,843 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
2024-09-20 16:29:02,844 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
2024-09-20 16:29:03,065 [omego.extern] INFO Completed [0.221 s]
2024-09-20 16:29:03,065 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n'
2024-09-20 16:29:03,066 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
2024-09-20 16:29:03,066 [omego.extern] INFO Running [current environment]: omero config get --show-password
2024-09-20 16:29:03,066 [omego.extern] INFO Executing : omero config get --show-password
2024-09-20 16:29:05,456 [omego.extern] INFO Completed [2.390 s]
2024-09-20 16:29:05,456 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
2024-09-20 16:29:05,457 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
2024-09-20 16:29:06,129 [omego.extern] INFO Completed [0.672 s]
2024-09-20 16:29:06,129 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
2024-09-20 16:29:06,130 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
2024-09-20 16:29:06,133 [ omego.db] INFO Database is already at OMERO5.4__0
+ export LANG=en_US.UTF-8
+ LANG=en_US.UTF-8
+ export LANGUAGE=en_US:en
+ LANGUAGE=en_US:en
+ export LC_ALL=en_US.UTF-8
+ LC_ALL=en_US.UTF-8
+ BUILD_ID=DONT_KILL_ME
+ omero admin start
WARNING: lock files in /home/omero/omero-server-data
----------------------------------------
/home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock
----------------------------------------
You may want to stop all server processes and remove
these files manually. Lock files can remain after an
abrupt server outage and are especially frequent on
remotely mounted filesystems like NFS.
No descriptor given. Using etc/grid/default.xml
Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
Waiting on startup. Use CTRL-C to exit
+ omero admin waitup
Waiting on startup. Use CTRL-C to exit
+ omero admin diagnostics
================================================================================
OMERO Diagnostics (admin)
================================================================================
Commands: java -version 11.0.24 (/usr/bin/java)
Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
Commands: psql --version 16.4 (/usr/bin/psql)
Commands: openssl version 3.0.71 (/usr/bin/openssl)
Component: OMERO.py 5.19.6.dev0
Component: OMERO.server 5.6.3-510-9780907658-ice36
Server: icegridnode running
Server: Blitz-0 active (pid = 2601, enabled)
Server: Indexer-0 active (pid = 2622, enabled)
Server: OMERO.Glacier2 active (pid = 2627, enabled)
Server: OMERO.IceStorm active (pid = 2649, enabled)
Server: Processor-0 activating (enabled)
Server: Tables-0 activating (enabled)
Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
Log files: DropBox.log n/a
Log files: FileServer.log n/a
Log files: Indexer-0.log 2.6 KB
Log files: MonitorServer.log n/a
Log files: Processor-0.log 592 B
Log files: Tables-0.log 841 B
Log files: TestDropBox.log n/a
Log files: master.err 180 B
Log files: master.out 30.1 KB
Log files: Total size 0.06 MB
Environment:OMERO_HOME=(unset)
Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=/opt/ice-3.6.5
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
+ deactivate
+ '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ export PATH
+ unset _OLD_VIRTUAL_PATH
+ '[' -n '' ']'
+ '[' -n /bin/bash -o -n '' ']'
+ hash -r
+ '[' -n '' ']'
+ unset VIRTUAL_ENV
+ '[' '!' '' = nondestructive ']'
+ unset -f deactivate
Finished: SUCCESS