21:26:18 Started by user devspace 21:26:18 Running as SYSTEM 21:26:18 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 21:26:18 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3551483846300376189.sh 21:26:18 + source /home/settings.env 21:26:18 ++ OMERO_DB_HOST=pg 21:26:18 ++ OMERO_DB_USER=postgres 21:26:18 ++ OMERO_DB_PASS= 21:26:18 ++ OMERO_ROOT_PASS=omero 21:26:18 ++ OMERO_DATA_DIR=/OMERO 21:26:18 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 21:26:18 + OMERO_DB_NAME=OMERO-server 21:26:18 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 21:26:18 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 21:26:18 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 21:26:18 + OMERO_DATA_DIR=/home/omero/omero-server-data 21:26:18 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 21:26:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 21:26:18 ++ deactivate nondestructive 21:26:18 ++ '[' -n '' ']' 21:26:18 ++ '[' -n '' ']' 21:26:18 ++ hash -r 21:26:18 ++ '[' -n '' ']' 21:26:18 ++ unset VIRTUAL_ENV 21:26:18 ++ unset VIRTUAL_ENV_PROMPT 21:26:18 ++ '[' '!' nondestructive = nondestructive ']' 21:26:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 21:26:18 ++ export VIRTUAL_ENV 21:26:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:26:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:26:18 ++ export PATH 21:26:18 ++ '[' -n '' ']' 21:26:18 ++ '[' -z '' ']' 21:26:18 ++ _OLD_VIRTUAL_PS1= 21:26:18 ++ PS1='(.venv3) ' 21:26:18 ++ export PS1 21:26:18 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 21:26:18 ++ export VIRTUAL_ENV_PROMPT 21:26:18 ++ hash -r 21:26:18 + omero admin stop 21:26:19 Missing internal configuration. Pass --force-rewrite to the command. 21:26:19 + echo not running 21:26:19 not running 21:26:19 + sleep 5 21:26:24 + deactivate 21:26:24 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 21:26:24 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:26:24 + export PATH 21:26:24 + unset _OLD_VIRTUAL_PATH 21:26:24 + '[' -n '' ']' 21:26:24 + hash -r 21:26:24 + '[' -n '' ']' 21:26:24 + unset VIRTUAL_ENV 21:26:24 + unset VIRTUAL_ENV_PROMPT 21:26:24 + '[' '!' '' = nondestructive ']' 21:26:24 + unset -f deactivate 21:26:24 + rm -rf /home/omero/workspace/OMERO-server/.venv3 21:26:24 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 21:26:28 + '[' true = true ']' 21:26:28 + dropdb -h pg -U postgres OMERO-server 21:26:28 dropdb: error: database removal failed: ERROR: database "OMERO-server" does not exist 21:26:28 + echo 'First run or already exists' 21:26:28 First run or already exists 21:26:28 + rm -rf /home/omero/omero-server-data 21:26:28 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 21:26:29 Copied 1 artifact from "OMERO-build" build number 1 21:26:30 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 1 21:26:30 Copied 2 artifacts from "OMERO-build-build" build number 4 21:26:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17804806588247031954.sh 21:26:30 + source /home/settings.env 21:26:30 ++ OMERO_DB_HOST=pg 21:26:30 ++ OMERO_DB_USER=postgres 21:26:30 ++ OMERO_DB_PASS= 21:26:30 ++ OMERO_ROOT_PASS=omero 21:26:30 ++ OMERO_DATA_DIR=/OMERO 21:26:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 21:26:30 + OMERO_DB_NAME=OMERO-server 21:26:30 + OMERO_DATA_DIR=/home/omero/omero-server-data 21:26:30 + mkdir -p /home/omero/omero-server-data 21:26:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 21:26:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 21:26:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 21:26:30 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 21:26:30 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 21:26:30 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 21:26:30 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 21:26:30 ++ ls OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip 21:26:30 + ZIP=OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip 21:26:30 + '[' '!' -z '' ']' 21:26:30 + DIST=OMERO.server-5.6.3-576-82ef22269e-ice36-b1 21:26:30 + unzip OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip 21:26:30 Archive: OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/grid/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/profiles/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/error/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/janelia/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/matplotlib/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/ncsa_paledit/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/seaborn/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/wcif/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/analysis_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/annotation_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/export_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/figure_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/import_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/util_scripts/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/misc/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__1/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__10/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__11/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__2/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__3/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__4/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__5/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__6/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__7/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__8/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__9/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__4/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__5/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__6/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__7/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.1__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__1/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__2/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__3/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/var/ 21:26:30 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/var/tmp/ 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/LICENSE.txt 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/backup.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/mail-senders.example 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/mail-server.example 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/build.properties 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/env.bat 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/env.sh 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/hibernate.properties 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/ice.config 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-cli.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-indexing-cli.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-indexing.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/mime.types 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/node1.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/node2.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/omero.properties 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/profiles/psql 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/rollover.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/Windows.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/error/maintainance.html 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/README 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/default.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/templates.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/windefault.xml 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/ice.config 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/internal.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/master.cfg 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/robot.template 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/testdropbox.config 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/history.rst 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/OMEZarrReader.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/accessors-smart.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/activation.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aggdesigner-algorithm.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aircompressor.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/antlr.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aopalliance.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/apiguardian-api.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/asm.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/avatica-core.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/avatica-metrics.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-core.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-kms.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-s3.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/base.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-anim.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-awt-util.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-bridge.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-codec.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-constants.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-css.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-dom.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-ext.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-gvt.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-i18n.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-parser.jar 21:26:30 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-script.jar 21:26:30 inflating: 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OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__5/OMERO3__4.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__6/OMERO3__5.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__7/OMERO3__6.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.1__0/OMERO4__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4__0/OMERO3A__11.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/psql-footer.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/psql-header.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/schema.sql 21:26:32 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/views.sql 21:26:32 + rm -f OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip 21:26:32 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-82ef22269e-ice36-b1 /home/omero/workspace/OMERO-server/OMERO.server 21:26:32 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 21:26:32 ++ deactivate nondestructive 21:26:32 ++ '[' -n '' ']' 21:26:32 ++ '[' -n '' ']' 21:26:32 ++ hash -r 21:26:32 ++ '[' -n '' ']' 21:26:32 ++ unset VIRTUAL_ENV 21:26:32 ++ unset VIRTUAL_ENV_PROMPT 21:26:32 ++ '[' '!' nondestructive = nondestructive ']' 21:26:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 21:26:32 ++ export VIRTUAL_ENV 21:26:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:26:32 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:26:32 ++ export PATH 21:26:32 ++ '[' -n '' ']' 21:26:32 ++ '[' -z '' ']' 21:26:32 ++ _OLD_VIRTUAL_PS1= 21:26:32 ++ PS1='(.venv3) ' 21:26:32 ++ export PS1 21:26:32 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 21:26:32 ++ export VIRTUAL_ENV_PROMPT 21:26:32 ++ hash -r 21:26:32 + pip install -U pip 21:26:32 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 21:26:32 Collecting pip 21:26:32 Using cached pip-25.3-py3-none-any.whl (1.8 MB) 21:26:32 Installing collected packages: pip 21:26:32 Attempting uninstall: pip 21:26:32 Found existing installation: pip 22.3.1 21:26:32 Uninstalling pip-22.3.1: 21:26:32 Successfully uninstalled pip-22.3.1 21:26:33 Successfully installed pip-25.3 21:26:33 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 21:26:34 Collecting zeroc-ice==3.6.5 21:26:34 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 21:26:36 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.2 MB/s 0:00:01 21:26:36 Installing collected packages: zeroc-ice 21:26:37 Successfully installed zeroc-ice-3.6.5 21:26:37 + pip install markdown 21:26:37 Collecting markdown 21:26:37 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB) 21:26:37 Using cached markdown-3.10-py3-none-any.whl (107 kB) 21:26:37 Installing collected packages: markdown 21:26:37 Successfully installed markdown-3.10 21:26:37 + pip install reportlab 21:26:38 Collecting reportlab 21:26:38 Using cached reportlab-4.4.6-py3-none-any.whl.metadata (1.7 kB) 21:26:38 Collecting pillow>=9.0.0 (from reportlab) 21:26:38 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 21:26:38 Collecting charset-normalizer (from reportlab) 21:26:38 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) 21:26:38 Using cached reportlab-4.4.6-py3-none-any.whl (2.0 MB) 21:26:38 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 21:26:38 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 21:26:38 Installing collected packages: pillow, charset-normalizer, reportlab 21:26:39 21:26:39 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.6 21:26:39 + pip install omego 21:26:39 Collecting omego 21:26:39 Using cached omego-0.7.0-py3-none-any.whl 21:26:39 Collecting future (from omego) 21:26:39 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 21:26:40 Collecting yaclifw>=0.1.1 (from omego) 21:26:40 Using cached yaclifw-0.2.0-py3-none-any.whl 21:26:40 Collecting six (from yaclifw>=0.1.1->omego) 21:26:40 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 21:26:40 Using cached future-1.0.0-py3-none-any.whl (491 kB) 21:26:40 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 21:26:40 Installing collected packages: six, future, yaclifw, omego 21:26:40 21:26:40 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 21:26:40 + pip install tables 21:26:40 Collecting tables 21:26:40 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 21:26:41 Collecting numpy>=1.20.0 (from tables) 21:26:41 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 21:26:41 Collecting numexpr>=2.6.2 (from tables) 21:26:41 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 21:26:41 Collecting packaging (from tables) 21:26:41 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 21:26:41 Collecting py-cpuinfo (from tables) 21:26:41 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 21:26:41 Collecting blosc2>=2.3.0 (from tables) 21:26:41 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 21:26:41 Collecting typing-extensions>=4.4.0 (from tables) 21:26:41 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 21:26:41 Collecting ndindex (from blosc2>=2.3.0->tables) 21:26:41 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 21:26:41 Collecting msgpack (from blosc2>=2.3.0->tables) 21:26:41 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 21:26:41 Collecting platformdirs (from blosc2>=2.3.0->tables) 21:26:41 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB) 21:26:41 Collecting requests (from blosc2>=2.3.0->tables) 21:26:41 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 21:26:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4) 21:26:41 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 21:26:41 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) 21:26:41 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 21:26:41 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB) 21:26:41 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 21:26:41 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB) 21:26:41 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 21:26:41 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 21:26:41 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 21:26:41 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 21:26:41 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 21:26:41 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 21:26:41 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 21:26:41 Using cached packaging-25.0-py3-none-any.whl (66 kB) 21:26:41 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB) 21:26:41 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 21:26:41 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 21:26:41 Using cached idna-3.11-py3-none-any.whl (71 kB) 21:26:41 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) 21:26:41 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB) 21:26:42 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 21:26:45 21:26:45 Successfully installed blosc2-3.12.2 certifi-2025.11.12 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2 21:26:45 + pip install jinja2 21:26:45 Collecting jinja2 21:26:45 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 21:26:45 Collecting MarkupSafe>=2.0 (from jinja2) 21:26:45 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 21:26:45 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 21:26:45 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 21:26:45 Installing collected packages: MarkupSafe, jinja2 21:26:45 21:26:45 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 21:26:45 + pip install omero-py 21:26:46 Collecting omero-py 21:26:46 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB) 21:26:46 Collecting appdirs (from omero-py) 21:26:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 21:26:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 21:26:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.5) 21:26:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0) 21:26:46 Collecting PyYAML (from omero-py) 21:26:46 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 21:26:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 21:26:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) 21:26:46 Collecting portalocker (from omero-py) 21:26:46 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 21:26:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4) 21:26:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11) 21:26:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2) 21:26:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.11.12) 21:26:46 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 21:26:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 21:26:46 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 21:26:46 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 21:26:46 Installing collected packages: appdirs, PyYAML, portalocker, omero-py 21:26:48 21:26:48 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0 21:26:48 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 21:26:48 Collecting omero-metadata 21:26:48 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-h3t3z7ar/omero-metadata_0efd0c8cc41a4b7098008da3b494ba0a 21:26:48 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-h3t3z7ar/omero-metadata_0efd0c8cc41a4b7098008da3b494ba0a 21:26:49 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 55360552a4c7ee5a639da7e23376fa6008d4322d 21:26:49 Installing build dependencies: started 21:26:50 Installing build dependencies: finished with status 'done' 21:26:50 Getting requirements to build wheel: started 21:26:50 Getting requirements to build wheel: finished with status 'done' 21:26:50 Preparing metadata (pyproject.toml): started 21:26:50 Preparing metadata (pyproject.toml): finished with status 'done' 21:26:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3) 21:26:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 21:26:50 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 21:26:50 Collecting pandas (from omero-metadata) 21:26:50 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 21:26:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 21:26:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 21:26:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.5) 21:26:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0) 21:26:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 21:26:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) 21:26:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 21:26:51 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 21:26:51 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 21:26:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 21:26:51 Collecting pytz>=2020.1 (from pandas->omero-metadata) 21:26:51 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 21:26:51 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 21:26:51 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB) 21:26:51 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 21:26:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4) 21:26:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11) 21:26:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2) 21:26:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.11.12) 21:26:51 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 21:26:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 21:26:51 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 21:26:51 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB) 21:26:51 Building wheels for collected packages: omero-metadata 21:26:51 Building wheel for omero-metadata (pyproject.toml): started 21:26:51 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 21:26:51 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=55c77370e068586e3ad6934660e3a4b322df5b9821d0e7d1e1af7f8d6f2ad42a 21:26:51 Stored in directory: /tmp/pip-ephem-wheel-cache-pq30tr25/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 21:26:51 Successfully built omero-metadata 21:26:51 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 21:26:56 21:26:56 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3 21:26:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 21:26:56 Collecting omero-cli-render 21:26:56 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-84ovmgmk/omero-cli-render_fe5a73805b924849b2d39f8c91809610 21:26:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-84ovmgmk/omero-cli-render_fe5a73805b924849b2d39f8c91809610 21:26:57 Running command git checkout -b merge_ci --track origin/merge_ci 21:26:57 Switched to a new branch 'merge_ci' 21:26:57 branch 'merge_ci' set up to track 'origin/merge_ci'. 21:26:57 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 907b17fcd50e173beaad4eca82cee6da42015710 21:26:57 Installing build dependencies: started 21:26:58 Installing build dependencies: finished with status 'done' 21:26:58 Getting requirements to build wheel: started 21:26:58 Getting requirements to build wheel: finished with status 'done' 21:26:58 Preparing metadata (pyproject.toml): started 21:26:59 Preparing metadata (pyproject.toml): finished with status 'done' 21:26:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 21:26:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3) 21:26:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 21:26:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 21:26:59 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.5) 21:26:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0) 21:26:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 21:26:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) 21:26:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 21:26:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4) 21:26:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11) 21:26:59 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2) 21:26:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.11.12) 21:26:59 Building wheels for collected packages: omero-cli-render 21:26:59 Building wheel for omero-cli-render (pyproject.toml): started 21:26:59 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 21:26:59 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=f7710a29572489267d1791ea2c8e28750ba44eab5f1bca2c780076cefb5755e5 21:26:59 Stored in directory: /tmp/pip-ephem-wheel-cache-qxr3h4bm/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 21:26:59 Successfully built omero-cli-render 21:26:59 Installing collected packages: omero-cli-render 21:26:59 Successfully installed omero-cli-render-0.8.2.dev0 21:26:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 21:26:59 Collecting omero-cli-duplicate 21:26:59 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_1tn4e0b/omero-cli-duplicate_a7a7daa9fa94493396916da1fa1ace24 21:26:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_1tn4e0b/omero-cli-duplicate_a7a7daa9fa94493396916da1fa1ace24 21:27:00 Running command git checkout -b merge_ci --track origin/merge_ci 21:27:02 Switched to a new branch 'merge_ci' 21:27:02 branch 'merge_ci' set up to track 'origin/merge_ci'. 21:27:02 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 96bebeac456f9d52fcbfd37e3a4d803ef81dbb4e 21:27:02 Installing build dependencies: started 21:27:04 Installing build dependencies: finished with status 'done' 21:27:04 Getting requirements to build wheel: started 21:27:04 Getting requirements to build wheel: finished with status 'done' 21:27:04 Preparing metadata (pyproject.toml): started 21:27:04 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:04 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3) 21:27:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 21:27:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 21:27:04 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.5) 21:27:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0) 21:27:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 21:27:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 21:27:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) 21:27:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 21:27:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4) 21:27:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11) 21:27:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2) 21:27:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.11.12) 21:27:04 Building wheels for collected packages: omero-cli-duplicate 21:27:04 Building wheel for omero-cli-duplicate (pyproject.toml): started 21:27:04 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 21:27:04 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=3a10170d53baf84c77128c5edfaada12c7c6bae88b9477d5b096ba7a5379ac38 21:27:04 Stored in directory: /tmp/pip-ephem-wheel-cache-4q4v53wk/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 21:27:04 Successfully built omero-cli-duplicate 21:27:04 Installing collected packages: omero-cli-duplicate 21:27:04 Successfully installed omero-cli-duplicate-0.4.1.dev0 21:27:05 + pip install omero-certificates 21:27:05 Collecting omero-certificates 21:27:05 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 21:27:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3) 21:27:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 21:27:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 21:27:05 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.5) 21:27:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0) 21:27:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 21:27:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 21:27:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) 21:27:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 21:27:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4) 21:27:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11) 21:27:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2) 21:27:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.11.12) 21:27:05 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 21:27:05 Installing collected packages: omero-certificates 21:27:05 Successfully installed omero-certificates-0.4.0 21:27:05 + for x in *.tar.gz 21:27:05 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 21:27:05 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 21:27:05 Installing build dependencies: started 21:27:06 Installing build dependencies: finished with status 'done' 21:27:06 Getting requirements to build wheel: started 21:27:06 Getting requirements to build wheel: finished with status 'done' 21:27:06 Preparing metadata (pyproject.toml): started 21:27:07 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:07 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3) 21:27:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 21:27:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 21:27:07 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5) 21:27:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0) 21:27:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 21:27:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 21:27:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 21:27:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 21:27:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) 21:27:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) 21:27:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2) 21:27:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12) 21:27:07 Building wheels for collected packages: omero-dropbox 21:27:07 Building wheel for omero-dropbox (pyproject.toml): started 21:27:07 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 21:27:07 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=6a9c27371f1314b987e9003603d26dd05b7a95580ad37994a7d9708ddbd6fafc 21:27:07 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 21:27:07 Successfully built omero-dropbox 21:27:07 Installing collected packages: omero-dropbox 21:27:07 Successfully installed omero-dropbox-5.7.1.dev0 21:27:07 + for x in *.tar.gz 21:27:07 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 21:27:07 Processing ./omero_marshal-0.9.2.dev0.tar.gz 21:27:07 Installing build dependencies: started 21:27:08 Installing build dependencies: finished with status 'done' 21:27:08 Getting requirements to build wheel: started 21:27:09 Getting requirements to build wheel: finished with status 'done' 21:27:09 Preparing metadata (pyproject.toml): started 21:27:09 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:09 Building wheels for collected packages: omero_marshal 21:27:09 Building wheel for omero_marshal (pyproject.toml): started 21:27:09 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 21:27:09 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=e4a9ce5739090aeaf220b27a473a5d723c7254d7dff6d9a9245592ddc6a4dcf1 21:27:09 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 21:27:09 Successfully built omero_marshal 21:27:09 Installing collected packages: omero_marshal 21:27:09 Successfully installed omero_marshal-0.9.2.dev0 21:27:09 + for x in *.tar.gz 21:27:09 + pip install -U omero_py-5.22.0.dev0.tar.gz 21:27:10 Processing ./omero_py-5.22.0.dev0.tar.gz 21:27:10 Installing build dependencies: started 21:27:11 Installing build dependencies: finished with status 'done' 21:27:11 Getting requirements to build wheel: started 21:27:11 Getting requirements to build wheel: finished with status 'done' 21:27:11 Preparing metadata (pyproject.toml): started 21:27:11 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4) 21:27:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0) 21:27:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5) 21:27:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0) 21:27:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3) 21:27:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5) 21:27:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5) 21:27:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0) 21:27:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4) 21:27:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11) 21:27:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2) 21:27:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12) 21:27:11 Building wheels for collected packages: omero-py 21:27:11 Building wheel for omero-py (pyproject.toml): started 21:27:12 Building wheel for omero-py (pyproject.toml): finished with status 'done' 21:27:12 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=ccf113319fe45def2c031dbf294abf172243d4af5772c749324224676ae1b286 21:27:12 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3 21:27:12 Successfully built omero-py 21:27:12 Installing collected packages: omero-py 21:27:12 Attempting uninstall: omero-py 21:27:12 Found existing installation: omero-py 5.21.3 21:27:12 Uninstalling omero-py-5.21.3: 21:27:13 Successfully uninstalled omero-py-5.21.3 21:27:15 Successfully installed omero-py-5.22.0.dev0 21:27:15 + for x in *.tar.gz 21:27:15 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 21:27:15 Processing ./omero_scripts-5.9.2.dev0.tar.gz 21:27:15 Installing build dependencies: started 21:27:16 Installing build dependencies: finished with status 'done' 21:27:16 Getting requirements to build wheel: started 21:27:16 Getting requirements to build wheel: finished with status 'done' 21:27:16 Preparing metadata (pyproject.toml): started 21:27:16 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:16 Building wheels for collected packages: omero-scripts 21:27:16 Building wheel for omero-scripts (pyproject.toml): started 21:27:17 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 21:27:17 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=189d7e914a7b7e017900609940dd83ab769fee58f5a65fd7b5b004f1a847fe48 21:27:17 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 21:27:17 Successfully built omero-scripts 21:27:17 Installing collected packages: omero-scripts 21:27:17 Successfully installed omero-scripts-5.9.2.dev0 21:27:17 + for x in *.tar.gz 21:27:17 + pip install -U omero_web-5.30.1.dev0.tar.gz 21:27:17 Processing ./omero_web-5.30.1.dev0.tar.gz 21:27:17 Installing build dependencies: started 21:27:18 Installing build dependencies: finished with status 'done' 21:27:18 Getting requirements to build wheel: started 21:27:19 Getting requirements to build wheel: finished with status 'done' 21:27:19 Preparing metadata (pyproject.toml): started 21:27:19 Preparing metadata (pyproject.toml): finished with status 'done' 21:27:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0) 21:27:19 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0) 21:27:19 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 21:27:19 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0) 21:27:19 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB) 21:27:19 Collecting django-pipeline (from omero-web==5.30.1.dev0) 21:27:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 21:27:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0) 21:27:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 21:27:19 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0) 21:27:19 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 21:27:19 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0) 21:27:19 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 21:27:19 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0) 21:27:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0) 21:27:19 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (2025.2) 21:27:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0) 21:27:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0) 21:27:19 Collecting importlib-resources (from omero-web==5.30.1.dev0) 21:27:19 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 21:27:19 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 21:27:19 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB) 21:27:19 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0) 21:27:19 Using cached sqlparse-0.5.4-py3-none-any.whl.metadata (4.7 kB) 21:27:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4) 21:27:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0) 21:27:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5) 21:27:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3) 21:27:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5) 21:27:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5) 21:27:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (65.5.1) 21:27:19 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0) 21:27:19 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 21:27:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4) 21:27:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11) 21:27:19 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2) 21:27:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12) 21:27:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 21:27:19 Using cached django-5.2.9-py3-none-any.whl (8.3 MB) 21:27:19 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB) 21:27:19 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 21:27:19 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 21:27:19 Using cached sqlparse-0.5.4-py3-none-any.whl (45 kB) 21:27:19 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 21:27:19 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 21:27:19 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 21:27:19 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 21:27:19 Building wheels for collected packages: omero-web 21:27:19 Building wheel for omero-web (pyproject.toml): started 21:27:21 Building wheel for omero-web (pyproject.toml): finished with status 'done' 21:27:21 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819190 sha256=79d2a414d5e93924db5de3dbe27876a1c0c8bf7c0fb1e657d46021e094cd3db3 21:27:21 Stored in directory: /home/omero/.cache/pip/wheels/55/56/8c/76994afd7450bff12c009b26528517ee8944f8f2e1a40edc6c 21:27:21 Successfully built omero-web 21:27:21 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 21:27:23 21:27:23 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 sqlparse-0.5.4 wheel-0.45.1 whitenoise-6.11.0 21:27:23 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 21:27:23 --2025-12-17 21:27:23-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 21:27:23 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ... 21:27:23 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 21:27:23 HTTP request sent, awaiting response... 200 OK 21:27:24 Length: 126482 (124K) [text/plain] 21:27:24 Saving to: ‘Figure_To_Pdf.py’ 21:27:24 21:27:24 0K .......... .......... .......... .......... .......... 40% 3.93M 0s 21:27:24 50K .......... .......... .......... .......... .......... 80% 5.94M 0s 21:27:24 100K .......... .......... ... 100% 50.9M=0.02s 21:27:24 21:27:24 2025-12-17 21:27:24 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [126482/126482] 21:27:24 21:27:24 + chmod 755 Figure_To_Pdf.py 21:27:24 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 21:27:24 + omero config set omero.db.name OMERO-server 21:27:25 + omero config set omero.db.host pg 21:27:26 + omero config set omero.db.user postgres 21:27:27 + omero config set omero.data.dir /home/omero/omero-server-data 21:27:28 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 21:27:29 + omero config set omero.db.poolsize 25 21:27:30 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 21:27:31 + omero config set omero.security.trustStorePassword changeit 21:27:33 + omero config set omero.mail.config true 21:27:34 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 21:27:35 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 21:27:36 + omero certificates 21:27:37 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025) 21:27:37 certificates created: /home/omero/omero-server-data/certs/server.key /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 21:27:37 + '[' true = true ']' 21:27:37 + createdb -h pg -U postgres OMERO-server 21:27:37 + omego db init --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 21:27:37 2025-12-17 21:27:37,778 [omego.extern] INFO Executing : omero version 21:27:38 OMERO.py version: 21:27:38 OMERO.server version: 21:27:38 5.6.3-576-82ef22269e-ice36-b1 21:27:38 5.22.0.dev0 21:27:38 2025-12-17 21:27:38,972 [omego.extern] INFO Completed [1.194 s] 21:27:38 2025-12-17 21:27:38,972 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 21:27:38 2025-12-17 21:27:38,972 [omego.extern] INFO Running [current environment]: omero config get --show-password 21:27:38 2025-12-17 21:27:38,972 [omego.extern] INFO Executing : omero config get --show-password 21:27:40 2025-12-17 21:27:40,134 [omego.extern] INFO Completed [1.162 s] 21:27:40 2025-12-17 21:27:40,134 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 21:27:40 2025-12-17 21:27:40,134 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 21:27:40 2025-12-17 21:27:40,139 [omego.extern] INFO Completed [0.005 s] 21:27:40 2025-12-17 21:27:40,139 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11 21:27:40 21:27:40 2025-12-17 21:27:40,139 [omego.extern] INFO Running [current environment]: omero config get --show-password 21:27:40 2025-12-17 21:27:40,140 [omego.extern] INFO Executing : omero config get --show-password 21:27:41 2025-12-17 21:27:41,266 [omego.extern] INFO Completed [1.126 s] 21:27:41 2025-12-17 21:27:41,266 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 21:27:41 2025-12-17 21:27:41,266 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 21:27:41 2025-12-17 21:27:41,278 [omego.extern] INFO Completed [0.011 s] 21:27:41 2025-12-17 21:27:41,278 [ omego.db] INFO Creating SQL: omero-20251217-212741-278241.sql 21:27:41 2025-12-17 21:27:41,278 [omego.extern] INFO Running [current environment]: omero db script -f omero-20251217-212741-278241.sql omero 21:27:41 2025-12-17 21:27:41,278 [omego.extern] INFO Executing : omero db script -f omero-20251217-212741-278241.sql omero 21:27:43 2025-12-17 21:27:43,152 [omego.extern] INFO Completed [1.874 s] 21:27:43 2025-12-17 21:27:43,152 [ omego.db] INFO Creating database using omero-20251217-212741-278241.sql 21:27:43 2025-12-17 21:27:43,152 [omego.extern] INFO Running [current environment]: omero config get --show-password 21:27:43 2025-12-17 21:27:43,152 [omego.extern] INFO Executing : omero config get --show-password 21:27:44 2025-12-17 21:27:44,311 [omego.extern] INFO Completed [1.159 s] 21:27:44 2025-12-17 21:27:44,311 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 21:27:44 2025-12-17 21:27:44,311 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -f omero-20251217-212741-278241.sql 21:27:46 2025-12-17 21:27:46,444 [omego.extern] INFO Completed [2.132 s] 21:27:46 2025-12-17 21:27:46,444 [ omego.db] WARNI stderr: b'psql:omero-20251217-212741-278241.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"\npsql:omero-20251217-212741-278241.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"\npsql:omero-20251217-212741-278241.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"\n' 21:27:46 + export LANG=en_US.UTF-8 21:27:46 + LANG=en_US.UTF-8 21:27:46 + export LANGUAGE=en_US:en 21:27:46 + LANGUAGE=en_US:en 21:27:46 + export LC_ALL=en_US.UTF-8 21:27:46 + LC_ALL=en_US.UTF-8 21:27:46 + BUILD_ID=DONT_KILL_ME 21:27:46 + omero admin start 21:27:50 No descriptor given. Using etc/grid/default.xml 21:28:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 21:28:04 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 21:28:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 21:28:04 Waiting on startup. Use CTRL-C to exit 21:28:05 + omero admin waitup 21:28:06 Waiting on startup. Use CTRL-C to exit 21:28:06 + omero admin diagnostics 21:28:12 21:28:12 ================================================================================ 21:28:12 OMERO Diagnostics (admin) 21:28:12 ================================================================================ 21:28:12 21:28:12 Commands: java -version 11.0.25 (/usr/bin/java) 21:28:12 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 21:28:12 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 21:28:12 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 21:28:12 Commands: psql --version 16.11 (/usr/bin/psql) 21:28:12 Commands: openssl version 3.5.11 (/usr/bin/openssl) 21:28:12 21:28:12 Component: OMERO.py 5.22.0.dev0 21:28:12 Component: OMERO.server 5.6.3-576-82ef22269e-ice36-b1 21:28:12 21:28:12 Server: icegridnode running 21:28:12 Server: Blitz-0 active (pid = 3826, enabled) 21:28:12 Server: Indexer-0 active (pid = 3850, enabled) 21:28:12 Server: OMERO.Glacier2 active (pid = 3856, enabled) 21:28:12 Server: OMERO.IceStorm active (pid = 3880, enabled) 21:28:12 Server: Processor-0 activating (enabled) 21:28:12 Server: Tables-0 activating (enabled) 21:28:12 21:28:12 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 21:28:12 Log files: Blitz-0.log 135.7 KB errors=0 warnings=1 21:28:12 Log files: DropBox.log n/a 21:28:12 Log files: FileServer.log n/a 21:28:12 Log files: Indexer-0.log 2.6 KB 21:28:12 Log files: MonitorServer.log n/a 21:28:12 Log files: Processor-0.log 592 B 21:28:12 Log files: Tables-0.log 841 B 21:28:12 Log files: TestDropBox.log n/a 21:28:12 Log files: master.err empty 21:28:12 Log files: master.out 30.5 KB 21:28:12 Log files: Total size 0.17 MB 21:28:12 21:28:12 21:28:12 Environment:OMERO_HOME=(unset) 21:28:12 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 21:28:12 Environment:OMERO_NODE=(unset) 21:28:12 Environment:OMERO_MASTER=(unset) 21:28:12 Environment:OMERO_USERDIR=(unset) 21:28:12 Environment:OMERO_TMPDIR=(unset) 21:28:12 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:28:12 Environment:PYTHONPATH=(unset) 21:28:12 Environment:ICE_HOME=/opt/ice-3.6.5 21:28:12 Environment:LD_LIBRARY_PATH=(unset) 21:28:12 Environment:DYLD_LIBRARY_PATH=(unset) 21:28:12 21:28:12 OMERO SSL port:4064 21:28:12 OMERO TCP port:4063 21:28:12 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 21:28:12 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 21:28:12 21:28:12 JVM settings: Blitz-${index} -Xmx7200m 21:28:12 JVM settings: Indexer-${index} -Xmx4800m 21:28:12 JVM settings: PixelData-${index} -Xmx7200m 21:28:12 JVM settings: Repository-${index} -Xmx4800m 21:28:12 21:28:12 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 17 December 2025 d6488fa92ce943a35a02dc332227746f1ca4c65e 21:28:12 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 17 December 2025 d6488fa92ce943a35a02dc332227746f1ca4c65e 21:28:12 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 17 December 2025 d6488fa92ce943a35a02dc332227746f1ca4c65e 21:28:12 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/ome-xml.jar OME XML library 6.5.2-SNAPSHOT 17 December 2025 59050755024950af2e47f39e944c25d76847cffa 21:28:12 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 21:28:12 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 21:28:12 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT 21:28:12 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 21:28:12 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 21:28:12 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 21:28:12 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 21:28:12 + deactivate 21:28:12 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 21:28:12 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 21:28:12 + export PATH 21:28:12 + unset _OLD_VIRTUAL_PATH 21:28:12 + '[' -n '' ']' 21:28:12 + hash -r 21:28:12 + '[' -n '' ']' 21:28:12 + unset VIRTUAL_ENV 21:28:12 + unset VIRTUAL_ENV_PROMPT 21:28:12 + '[' '!' '' = nondestructive ']' 21:28:12 + unset -f deactivate 21:28:12 Finished: SUCCESS