11:36:26 Started by upstream project "Trigger" build number 226 11:36:26 originally caused by: 11:36:26 Started by user devspace 11:36:26 Running as SYSTEM 11:36:27 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 11:36:28 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14177915816406277942.sh 11:36:28 + source /home/settings.env 11:36:28 ++ OMERO_DB_HOST=pg 11:36:28 ++ OMERO_DB_USER=postgres 11:36:28 ++ OMERO_DB_PASS= 11:36:28 ++ OMERO_ROOT_PASS=omero 11:36:28 ++ OMERO_DATA_DIR=/OMERO 11:36:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:36:28 + OMERO_DB_NAME=OMERO-server 11:36:28 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 11:36:28 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:36:28 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:36:28 + OMERO_DATA_DIR=/home/omero/omero-server-data 11:36:28 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 11:36:28 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 11:36:28 ++ deactivate nondestructive 11:36:28 ++ '[' -n '' ']' 11:36:28 ++ '[' -n '' ']' 11:36:28 ++ '[' -n /bin/bash -o -n '' ']' 11:36:28 ++ hash -r 11:36:28 ++ '[' -n '' ']' 11:36:28 ++ unset VIRTUAL_ENV 11:36:28 ++ '[' '!' nondestructive = nondestructive ']' 11:36:28 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 11:36:28 ++ export VIRTUAL_ENV 11:36:28 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:36:28 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:36:28 ++ export PATH 11:36:28 ++ '[' -n '' ']' 11:36:28 ++ '[' -z '' ']' 11:36:28 ++ _OLD_VIRTUAL_PS1= 11:36:28 ++ PS1='(.venv3) ' 11:36:28 ++ export PS1 11:36:28 ++ '[' -n /bin/bash -o -n '' ']' 11:36:28 ++ hash -r 11:36:28 + omero admin stop 11:36:59 Server not running 11:37:00 + echo not running 11:37:00 not running 11:37:00 + sleep 5 11:37:05 + deactivate 11:37:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 11:37:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:37:05 + export PATH 11:37:05 + unset _OLD_VIRTUAL_PATH 11:37:05 + '[' -n '' ']' 11:37:05 + '[' -n /bin/bash -o -n '' ']' 11:37:05 + hash -r 11:37:05 + '[' -n '' ']' 11:37:05 + unset VIRTUAL_ENV 11:37:05 + '[' '!' '' = nondestructive ']' 11:37:05 + unset -f deactivate 11:37:05 + rm -rf /home/omero/workspace/OMERO-server/.venv3 11:37:05 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 11:37:11 + '[' false = true ']' 11:37:11 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 11:37:11 Skipping PURGE_DATA:CleanDbAndRepo 11:37:11 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 11:37:13 Copied 1 artifact from "OMERO-build" build number 188 11:37:14 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 185 11:37:14 Copied 2 artifacts from "OMERO-build-build" build number 193 11:37:14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14344375987569926660.sh 11:37:14 + source /home/settings.env 11:37:14 ++ OMERO_DB_HOST=pg 11:37:14 ++ OMERO_DB_USER=postgres 11:37:14 ++ OMERO_DB_PASS= 11:37:14 ++ OMERO_ROOT_PASS=omero 11:37:14 ++ OMERO_DATA_DIR=/OMERO 11:37:14 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:37:14 + OMERO_DB_NAME=OMERO-server 11:37:14 + OMERO_DATA_DIR=/home/omero/omero-server-data 11:37:14 + mkdir -p /home/omero/omero-server-data 11:37:14 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 11:37:14 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:37:14 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:37:14 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 11:37:14 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 11:37:14 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 11:37:14 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 11:37:14 ++ ls OMERO.server-5.6.3-513-4bf99efd43-ice36.zip 11:37:14 + ZIP=OMERO.server-5.6.3-513-4bf99efd43-ice36.zip 11:37:14 + '[' '!' -z '' ']' 11:37:14 + DIST=OMERO.server-5.6.3-513-4bf99efd43-ice36 11:37:14 + unzip OMERO.server-5.6.3-513-4bf99efd43-ice36.zip 11:37:14 Archive: OMERO.server-5.6.3-513-4bf99efd43-ice36.zip 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/blitz/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/grid/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/profiles/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/error/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/grid/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/janelia/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/analysis_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/annotation_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/export_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/import_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/misc/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__1/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__10/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__11/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__2/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__3/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__4/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__5/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__6/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__7/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__8/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__9/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__4/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__5/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__6/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__7/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.1__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.2__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.2__0/t/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.3__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.4__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.0__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.1__1/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.2__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__1/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__2/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__3/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/ 11:37:14 creating: OMERO.server-5.6.3-513-4bf99efd43-ice36/var/ 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/LICENSE.txt 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/backup.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/blitz/mail-senders.example 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/blitz/mail-server.example 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/build.properties 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/env.bat 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/env.sh 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/hibernate.properties 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/ice.config 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/logback-cli.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/logback-indexing-cli.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/logback-indexing.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/logback.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/mime.types 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/node1.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/node2.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/omero.properties 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/profiles/psql 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/rollover.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/Windows.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/error/maintainance.html 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/grid/README 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/grid/default.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/grid/templates.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/grid/windefault.xml 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/ice.config 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/internal.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/master.cfg 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/templates/robot.template 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/etc/testdropbox.config 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/history.rst 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/OMEZarrReader.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/activation.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aggdesigner-algorithm.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aircompressor.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/antlr.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aopalliance.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/avatica-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/avatica-metrics.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aws-java-sdk-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aws-java-sdk-kms.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/aws-java-sdk-s3.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/base.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-all.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-anim.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-awt-util.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-bridge.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-codec.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-constants.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-css.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-dom.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-ext.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-extension.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-gui-util.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-gvt.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-i18n.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-parser.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-rasterizer-ext.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-rasterizer.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-script.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-slideshow.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-squiggle-ext.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-squiggle.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-svg-dom.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-svgbrowser.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-svggen.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-svgpp.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-svgrasterizer.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-swing.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-transcoder.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-ttf2svg.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-util.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/batik-xml.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/btm.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/bufr.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/c3p0.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/calcite-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/calcite-linq4j.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/cdm-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/checker-qual.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-beanutils.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-codec.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-collections.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-collections4.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-compiler.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-dbcp2.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-io.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-lang.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-lang3.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-logging.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/commons-pool2.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/dom4j.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ehcache.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/error_prone_annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/esri-geometry-api.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/failureaccess.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/filters.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/fontbox.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/formats-api.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/formats-bsd.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/formats-gpl.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/glacier2.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/google-http-client-xml.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/google-http-client.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/guava.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hamcrest-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hazelcast-all.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hibernate-commons-annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hibernate-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hibernate-jpa-2.0-api.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hibernate-search-analyzers.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/hibernate-search.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/httpclient.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/httpcore.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/httpmime.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/httpservices.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ice.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/icegrid.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/icestorm.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ini4j.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/j2objc-annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jackson-annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jackson-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jackson-databind.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jackson-dataformat-cbor.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jackson-dataformat-yaml.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jamon.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/janino.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/java-getopt.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/java-image-scaling.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/javassist.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/javax.activation.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/javax.mail.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jblosc.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jcip-annotations.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jcl-over-slf4j.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jgoodies-common.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jgoodies-forms.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jhdf5.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jmespath-java.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jna.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/joda-time.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/json-path.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/json.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jta.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jul-to-slf4j.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/junit.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jxrlib-all.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jython.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/jzarr.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/kryo.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/listenablefuture.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/logback-classic.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/logback-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-analyzers.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-core.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-highlighter.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-memory.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-misc.jar 11:37:14 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-smartcn.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-spatial.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-spellchecker.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/lucene-stempel.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/memory.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metadata-extractor.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metakit.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metrics-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metrics-graphite.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metrics-jvm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/metrics-logback.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/minio.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/minlog.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/native-lib-loader.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/objenesis.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/okhttp.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/okio.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-codecs.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-common.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-jai.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-mdbtools.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-poi.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/ome-xml.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-blitz.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-common.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-gateway.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-model.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-renderer.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-romio.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/omero-server.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/pdfbox.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/perf4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/postgresql.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/protobuf-java.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/quartz.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/re2j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/reflectasm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/rhino.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/serializer.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/sketches-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/slf4j-api.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/snakeyaml.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/solr-analysis-extras.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/solr-commons-csv.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/solr-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/solr-solrj.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/specification.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-aop.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-beans.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-context-support.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-context.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-expression.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-jdbc.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-jms.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-ldap-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-messaging.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-orm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-security-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-security-ldap.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/spring-tx.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/sqlite-jdbc.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/subethasmtp.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/turbojpeg.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/udunits.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xalan.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xercesImpl.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xml-apis-ext.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xml-apis.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xmlgraphics-commons.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xmpcore.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/client/xpp3.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/README.rst 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/3-3-2_rgb.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/fire.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/glasbey.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/glasbey_inverted.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/glow.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/grays.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ice.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/janelia/pup_br.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/janelia/pup_nr.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/16_colors.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/5_ramps.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/6_shades.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/blue_orange_icb.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/brgbcmyw.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/cool.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/edges.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/gem.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/phase.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/royal.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/sepia.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/smart.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/thal.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/thallium.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/ncsa_paledit/unionjack.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/physics.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/red-green.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/spectrum.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/thermal.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/cyan_hot.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/green_fire_blue.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/hilo.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/ica.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/ica2.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/ica3.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/magenta_hot.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/orange_hot.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/rainbow_rgb.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/red_hot.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/luts/wcif/yellow_hot.lut 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/analysis_scripts/Kymograph.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/analysis_scripts/Kymograph_Analysis.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/analysis_scripts/Plot_Profile.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/analysis_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/annotation_scripts/KeyVal_from_csv.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/annotation_scripts/KeyVal_to_csv.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/annotation_scripts/Remove_KeyVal.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/annotation_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/export_scripts/Batch_Image_Export.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/export_scripts/Batch_ROI_Export.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/export_scripts/Make_Movie.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/export_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/Movie_Figure.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/Movie_ROI_Figure.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/ROI_Split_Figure.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/Split_View_Figure.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/Thumbnail_Figure.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/figure_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/import_scripts/Populate_Metadata.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/import_scripts/Populate_ROI.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/import_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/Channel_Offsets.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/Combine_Images.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/Dataset_To_Plate.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/Images_From_ROIs.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/Move_Annotations.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/scripts/omero/util_scripts/__init__.py 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/OMEZarrReader.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/activation.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aggdesigner-algorithm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aircompressor.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/antlr.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aopalliance.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/avatica-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/avatica-metrics.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aws-java-sdk-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aws-java-sdk-kms.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/aws-java-sdk-s3.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/base.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-all.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-anim.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-awt-util.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-bridge.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-codec.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-constants.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-css.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-dom.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-ext.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-extension.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-gui-util.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-gvt.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-i18n.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-parser.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-rasterizer-ext.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-rasterizer.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-script.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-slideshow.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-squiggle-ext.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-squiggle.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-svg-dom.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-svgbrowser.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-svggen.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-svgpp.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-svgrasterizer.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-swing.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-transcoder.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-ttf2svg.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-util.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/batik-xml.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/btm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/bufr.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/c3p0.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/calcite-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/calcite-linq4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/cdm-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/checker-qual.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-beanutils.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-codec.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-collections.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-collections4.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-compiler.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-dbcp2.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-io.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-lang.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-lang3.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-logging.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/commons-pool2.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/dom4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ehcache.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/error_prone_annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/esri-geometry-api.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/failureaccess.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/filters.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/fontbox.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/formats-api.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/formats-bsd.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/formats-gpl.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/glacier2.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/google-http-client-xml.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/google-http-client.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/guava.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hamcrest-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hazelcast-all.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hibernate-commons-annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hibernate-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hibernate-jpa-2.0-api.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hibernate-search-analyzers.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/hibernate-search.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/httpclient.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/httpcore.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/httpmime.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/httpservices.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ice.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/icegrid.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/icestorm.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ini4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/j2objc-annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jackson-annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jackson-core.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jackson-databind.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jackson-dataformat-cbor.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jackson-dataformat-yaml.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jamon.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/janino.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/java-getopt.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/java-image-scaling.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/javassist.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/javax.activation.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/javax.mail.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jblosc.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jcip-annotations.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jcl-over-slf4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jgoodies-common.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jgoodies-forms.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jhdf5.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jmespath-java.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jna.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/joda-time.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/json-path.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/json.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jta.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jul-to-slf4j.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/junit.jar 11:37:15 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jxrlib-all.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jython.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/jzarr.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/kryo.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/listenablefuture.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/logback-classic.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/logback-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-analyzers.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-highlighter.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-memory.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-misc.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-smartcn.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-spatial.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-spellchecker.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/lucene-stempel.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/memory.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metadata-extractor.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metakit.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metrics-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metrics-graphite.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metrics-jvm.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/metrics-logback.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/minio.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/minlog.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/native-lib-loader.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/objenesis.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/okhttp.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/okio.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-codecs.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-common.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-jai.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-mdbtools.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-poi.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/ome-xml.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-blitz.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-common.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-gateway.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-model.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-renderer.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-romio.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/omero-server.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/pdfbox.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/perf4j.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/postgresql.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/protobuf-java.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/quartz.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/re2j.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/reflectasm.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/rhino.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/serializer.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/sketches-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/slf4j-api.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/snakeyaml.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/solr-analysis-extras.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/solr-commons-csv.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/solr-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/solr-solrj.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/specification.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-aop.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-beans.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-context-support.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-context.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-expression.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-jdbc.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-jms.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-ldap-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-messaging.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-orm.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-security-core.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-security-ldap.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/spring-tx.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/sqlite-jdbc.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/subethasmtp.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/turbojpeg.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/udunits.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xalan.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xercesImpl.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xml-apis-ext.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xml-apis.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xmlgraphics-commons.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xmpcore.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/lib/server/xpp3.jar 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/README 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/agpl.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/antlr.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/apache-v1.1.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/apache-v2.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/asm.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/bouncy_castle_license.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/bsd.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/cddl-v1.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/cpl-v10.html 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/crystalclear.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/django.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/dom4j.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/epl-v1.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/fbsd.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/freemarker.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/gpl-v2.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/gpl.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/gtest.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/iconsweets_license.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/jamon.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/jmock.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/jquery.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/jtidy.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/lgpl-3.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/lgpl-v2.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/lgpl-v2.1.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/lgpl-v3.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/lgpl.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/matplotlib.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/mit.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/mpl-v1_0.htm 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/npl-1_1.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/path.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/pil.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/postgresql.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/psf-v2.0.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/psf-v2.5.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/scons.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/slf4j.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/tablelayout.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/which.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/zlib-libpng.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/share/licenses/zpl-v2.1.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/README.txt 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/misc/Makefile 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/misc/current.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/misc/enums.py 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__4/OMERO3__1.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/psql-header.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/schema.sql 11:37:16 inflating: OMERO.server-5.6.3-513-4bf99efd43-ice36/sql/psql/OMERO5.4__0/views.sql 11:37:16 + rm -f OMERO.server-5.6.3-513-4bf99efd43-ice36.zip 11:37:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-513-4bf99efd43-ice36 /home/omero/workspace/OMERO-server/OMERO.server 11:37:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 11:37:16 ++ deactivate nondestructive 11:37:16 ++ '[' -n '' ']' 11:37:16 ++ '[' -n '' ']' 11:37:16 ++ '[' -n /bin/bash -o -n '' ']' 11:37:16 ++ hash -r 11:37:16 ++ '[' -n '' ']' 11:37:16 ++ unset VIRTUAL_ENV 11:37:16 ++ '[' '!' nondestructive = nondestructive ']' 11:37:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 11:37:16 ++ export VIRTUAL_ENV 11:37:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:37:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:37:16 ++ export PATH 11:37:16 ++ '[' -n '' ']' 11:37:16 ++ '[' -z '' ']' 11:37:16 ++ _OLD_VIRTUAL_PS1= 11:37:16 ++ PS1='(.venv3) ' 11:37:16 ++ export PS1 11:37:16 ++ '[' -n /bin/bash -o -n '' ']' 11:37:16 ++ hash -r 11:37:16 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 11:37:17 Collecting zeroc-ice==3.6.5 11:37:17 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 11:37:19 Installing collected packages: zeroc-ice 11:37:19 Successfully installed zeroc-ice-3.6.5 11:37:19 + pip install -U pip future 11:37:20 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 11:37:20 Collecting pip 11:37:20 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 11:37:20 Collecting future 11:37:20 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:37:20 Installing collected packages: pip, future 11:37:20 Attempting uninstall: pip 11:37:20 Found existing installation: pip 21.2.3 11:37:21 Uninstalling pip-21.2.3: 11:37:21 Successfully uninstalled pip-21.2.3 11:37:22 Successfully installed future-1.0.0 pip-24.2 11:37:22 + pip install markdown 11:37:23 Collecting markdown 11:37:23 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 11:37:23 Collecting importlib-metadata>=4.4 (from markdown) 11:37:23 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) 11:37:23 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 11:37:23 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB) 11:37:23 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 11:37:23 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) 11:37:23 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB) 11:37:23 Installing collected packages: zipp, importlib-metadata, markdown 11:37:23 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2 11:37:23 + pip install reportlab 11:37:24 Collecting reportlab 11:37:24 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 11:37:24 Collecting pillow>=9.0.0 (from reportlab) 11:37:24 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 11:37:25 Collecting chardet (from reportlab) 11:37:25 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 11:37:25 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 11:37:25 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 11:37:25 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 11:37:25 Installing collected packages: pillow, chardet, reportlab 11:37:26 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 11:37:26 + pip install omego 11:37:27 Collecting omego 11:37:27 Using cached omego-0.7.0-py3-none-any.whl 11:37:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 11:37:28 Collecting yaclifw>=0.1.1 (from omego) 11:37:28 Using cached yaclifw-0.2.0-py3-none-any.whl 11:37:28 Collecting six (from yaclifw>=0.1.1->omego) 11:37:28 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 11:37:28 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 11:37:28 Installing collected packages: six, yaclifw, omego 11:37:28 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 11:37:28 + pip install tables 11:37:29 Collecting tables 11:37:29 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 11:37:29 Collecting numpy>=1.19.0 (from tables) 11:37:29 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 11:37:29 Collecting numexpr>=2.6.2 (from tables) 11:37:29 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 11:37:29 Collecting packaging (from tables) 11:37:29 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 11:37:29 Collecting py-cpuinfo (from tables) 11:37:29 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 11:37:30 Collecting blosc2>=2.3.0 (from tables) 11:37:30 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 11:37:30 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 11:37:30 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 11:37:30 Collecting msgpack (from blosc2>=2.3.0->tables) 11:37:30 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 11:37:30 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 11:37:30 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 11:37:30 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 11:37:30 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 11:37:30 Using cached packaging-24.1-py3-none-any.whl (53 kB) 11:37:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 11:37:31 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB) 11:37:31 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 11:37:31 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 11:37:35 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 11:37:35 + pip install jinja2 11:37:35 Collecting jinja2 11:37:35 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 11:37:35 Collecting MarkupSafe>=2.0 (from jinja2) 11:37:35 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 11:37:35 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 11:37:35 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 11:37:36 Installing collected packages: MarkupSafe, jinja2 11:37:36 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 11:37:36 + pip install omero-py 11:37:36 Collecting omero-py 11:37:36 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB) 11:37:36 Collecting urllib3<2 (from omero-py) 11:37:36 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 11:37:36 Collecting appdirs (from omero-py) 11:37:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 11:37:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 11:37:37 Collecting numpy<2 (from omero-py) 11:37:37 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 11:37:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 11:37:37 Collecting PyYAML (from omero-py) 11:37:37 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 11:37:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 11:37:37 Collecting requests (from omero-py) 11:37:37 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 11:37:37 Collecting portalocker (from omero-py) 11:37:37 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 11:37:37 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 11:37:37 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 11:37:37 Collecting idna<4,>=2.5 (from requests->omero-py) 11:37:37 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 11:37:38 Collecting certifi>=2017.4.17 (from requests->omero-py) 11:37:38 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) 11:37:38 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB) 11:37:38 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 11:37:38 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 11:37:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:37:38 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 11:37:38 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 11:37:38 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 11:37:39 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) 11:37:39 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 11:37:39 Using cached idna-3.10-py3-none-any.whl (70 kB) 11:37:39 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 11:37:39 Attempting uninstall: numpy 11:37:39 Found existing installation: numpy 2.0.2 11:37:39 Uninstalling numpy-2.0.2: 11:37:39 Successfully uninstalled numpy-2.0.2 11:37:44 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20 11:37:44 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 11:37:44 Collecting omero-metadata 11:37:44 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-rfm8ejhm/omero-metadata_ae55c1aaa1354e8593a2084aa492bf2a 11:37:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-rfm8ejhm/omero-metadata_ae55c1aaa1354e8593a2084aa492bf2a 11:37:47 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e4da7e1ee7e1257824f3f406947bf78e32dc6ed4 11:37:47 Installing build dependencies: started 11:37:49 Installing build dependencies: finished with status 'done' 11:37:49 Getting requirements to build wheel: started 11:37:49 Getting requirements to build wheel: finished with status 'done' 11:37:49 Preparing metadata (pyproject.toml): started 11:37:50 Preparing metadata (pyproject.toml): finished with status 'done' 11:37:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5) 11:37:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 11:37:50 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 11:37:50 Collecting pandas (from omero-metadata) 11:37:50 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 11:37:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 11:37:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 11:37:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 11:37:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 11:37:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 11:37:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 11:37:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 11:37:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 11:37:50 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 11:37:50 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 11:37:50 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 11:37:50 Collecting pytz>=2020.1 (from pandas->omero-metadata) 11:37:50 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 11:37:50 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 11:37:50 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) 11:37:51 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 11:37:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 11:37:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 11:37:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30) 11:37:51 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 11:37:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 11:37:51 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) 11:37:51 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB) 11:37:51 Building wheels for collected packages: omero-metadata 11:37:51 Building wheel for omero-metadata (pyproject.toml): started 11:37:51 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 11:37:51 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=dec4c179ae6c3d941161f25be0fa5cd6ce89d93be5425ef546165f65b7f69dd3 11:37:51 Stored in directory: /tmp/pip-ephem-wheel-cache-8g2cigxw/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 11:37:51 Successfully built omero-metadata 11:37:51 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 11:37:57 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2 11:37:57 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 11:37:57 Collecting omero-cli-render 11:37:57 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-oafaufom/omero-cli-render_1dc3356888c64e72ba2bd5c10e6dcb24 11:37:57 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-oafaufom/omero-cli-render_1dc3356888c64e72ba2bd5c10e6dcb24 11:37:58 Running command git checkout -b merge_ci --track origin/merge_ci 11:37:58 Switched to a new branch 'merge_ci' 11:37:58 branch 'merge_ci' set up to track 'origin/merge_ci'. 11:37:58 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 82dd40dd2984766c707128bda1590f5c3095db9c 11:37:58 Installing build dependencies: started 11:38:00 Installing build dependencies: finished with status 'done' 11:38:00 Getting requirements to build wheel: started 11:38:00 Getting requirements to build wheel: finished with status 'done' 11:38:00 Preparing metadata (pyproject.toml): started 11:38:01 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 11:38:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5) 11:38:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 11:38:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 11:38:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 11:38:01 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 11:38:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 11:38:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 11:38:01 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 11:38:01 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 11:38:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 11:38:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 11:38:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30) 11:38:01 Building wheels for collected packages: omero-cli-render 11:38:01 Building wheel for omero-cli-render (pyproject.toml): started 11:38:01 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 11:38:01 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=cdba3866a547df21906a146dcb7880ebcd579d6905698ca96b6c0df6f95a0663 11:38:01 Stored in directory: /tmp/pip-ephem-wheel-cache-svdaoukn/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 11:38:01 Successfully built omero-cli-render 11:38:01 Installing collected packages: omero-cli-render 11:38:01 Successfully installed omero-cli-render-0.8.2.dev0 11:38:01 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 11:38:02 Collecting omero-cli-duplicate 11:38:02 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-jr8qufo4/omero-cli-duplicate_de3e3b363a744df882243e44b840a37a 11:38:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-jr8qufo4/omero-cli-duplicate_de3e3b363a744df882243e44b840a37a 11:38:02 Running command git checkout -b merge_ci --track origin/merge_ci 11:38:03 Switched to a new branch 'merge_ci' 11:38:03 branch 'merge_ci' set up to track 'origin/merge_ci'. 11:38:03 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6c26a05ccc1a390e815f9c547202ad8ce4e1fe6c 11:38:03 Installing build dependencies: started 11:38:05 Installing build dependencies: finished with status 'done' 11:38:05 Getting requirements to build wheel: started 11:38:05 Getting requirements to build wheel: finished with status 'done' 11:38:05 Preparing metadata (pyproject.toml): started 11:38:05 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:06 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5) 11:38:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 11:38:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 11:38:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 11:38:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 11:38:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 11:38:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 11:38:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 11:38:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 11:38:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 11:38:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 11:38:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 11:38:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30) 11:38:06 Building wheels for collected packages: omero-cli-duplicate 11:38:06 Building wheel for omero-cli-duplicate (pyproject.toml): started 11:38:06 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 11:38:06 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=758421dc6b6834e5bd93562d6ae9295e34cd436461341b10c0e32e5424dc01f8 11:38:06 Stored in directory: /tmp/pip-ephem-wheel-cache-sn38mqe4/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 11:38:06 Successfully built omero-cli-duplicate 11:38:06 Installing collected packages: omero-cli-duplicate 11:38:06 Successfully installed omero-cli-duplicate-0.4.1.dev0 11:38:06 + pip install omero-certificates 11:38:07 Collecting omero-certificates 11:38:07 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 11:38:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5) 11:38:07 Collecting distro==1.8.0 (from omero-certificates) 11:38:07 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 11:38:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 11:38:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 11:38:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 11:38:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 11:38:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 11:38:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 11:38:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 11:38:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 11:38:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 11:38:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 11:38:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 11:38:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30) 11:38:07 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 11:38:07 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 11:38:07 Installing collected packages: distro, omero-certificates 11:38:07 Successfully installed distro-1.8.0 omero-certificates-0.3.2 11:38:07 + for x in *.tar.gz 11:38:07 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 11:38:07 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 11:38:07 Installing build dependencies: started 11:38:09 Installing build dependencies: finished with status 'done' 11:38:09 Getting requirements to build wheel: started 11:38:09 Getting requirements to build wheel: finished with status 'done' 11:38:09 Preparing metadata (pyproject.toml): started 11:38:10 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:10 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5) 11:38:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 11:38:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 11:38:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 11:38:10 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 11:38:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 11:38:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 11:38:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 11:38:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 11:38:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 11:38:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 11:38:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 11:38:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30) 11:38:10 Building wheels for collected packages: omero-dropbox 11:38:10 Building wheel for omero-dropbox (pyproject.toml): started 11:38:10 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 11:38:10 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=64d56df907a57f36274c56fe22c8c3453293c70dec76cb032abd21e06606cbbd 11:38:10 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 11:38:10 Successfully built omero-dropbox 11:38:10 Installing collected packages: omero-dropbox 11:38:10 Successfully installed omero-dropbox-5.7.1.dev0 11:38:10 + for x in *.tar.gz 11:38:10 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 11:38:11 Processing ./omero_marshal-0.9.1.dev0.tar.gz 11:38:11 Installing build dependencies: started 11:38:13 Installing build dependencies: finished with status 'done' 11:38:13 Getting requirements to build wheel: started 11:38:13 Getting requirements to build wheel: finished with status 'done' 11:38:13 Preparing metadata (pyproject.toml): started 11:38:13 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:13 Building wheels for collected packages: omero_marshal 11:38:13 Building wheel for omero_marshal (pyproject.toml): started 11:38:13 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 11:38:13 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=c6caf840e26b9de0b9bc1c2ce22a71f98fdbc88e2311098e1b1a1aa2e38e2e7b 11:38:13 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 11:38:13 Successfully built omero_marshal 11:38:14 Installing collected packages: omero_marshal 11:38:14 Successfully installed omero_marshal-0.9.1.dev0 11:38:14 + for x in *.tar.gz 11:38:14 + pip install -U omero_py-5.19.6.dev0.tar.gz 11:38:14 Processing ./omero_py-5.19.6.dev0.tar.gz 11:38:15 Installing build dependencies: started 11:38:16 Installing build dependencies: finished with status 'done' 11:38:17 Getting requirements to build wheel: started 11:38:19 Getting requirements to build wheel: finished with status 'done' 11:38:19 Preparing metadata (pyproject.toml): started 11:38:19 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20) 11:38:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4) 11:38:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0) 11:38:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4) 11:38:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0) 11:38:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2) 11:38:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5) 11:38:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3) 11:38:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1) 11:38:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2) 11:38:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10) 11:38:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30) 11:38:19 Building wheels for collected packages: omero-py 11:38:19 Building wheel for omero-py (pyproject.toml): started 11:38:20 Building wheel for omero-py (pyproject.toml): finished with status 'done' 11:38:20 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783191 sha256=38c669e36bb719322248e5ee748e530e2795331cf5499f91920e43098ef2d97a 11:38:20 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d 11:38:20 Successfully built omero-py 11:38:20 Installing collected packages: omero-py 11:38:20 Attempting uninstall: omero-py 11:38:20 Found existing installation: omero-py 5.19.5 11:38:20 Uninstalling omero-py-5.19.5: 11:38:21 Successfully uninstalled omero-py-5.19.5 11:38:23 Successfully installed omero-py-5.19.6.dev0 11:38:23 + for x in *.tar.gz 11:38:23 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 11:38:23 Processing ./omero_scripts-5.8.4.dev0.tar.gz 11:38:23 Installing build dependencies: started 11:38:25 Installing build dependencies: finished with status 'done' 11:38:25 Getting requirements to build wheel: started 11:38:25 Getting requirements to build wheel: finished with status 'done' 11:38:25 Preparing metadata (pyproject.toml): started 11:38:25 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:25 Building wheels for collected packages: omero-scripts 11:38:25 Building wheel for omero-scripts (pyproject.toml): started 11:38:26 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 11:38:26 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=25327592b2bb4057e4998f6ada3820e67385f83ef92484b410f53497144f76b2 11:38:26 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 11:38:26 Successfully built omero-scripts 11:38:26 Installing collected packages: omero-scripts 11:38:26 Successfully installed omero-scripts-5.8.4.dev0 11:38:26 + for x in *.tar.gz 11:38:26 + pip install -U omero_web-5.27.3.dev0.tar.gz 11:38:26 Processing ./omero_web-5.27.3.dev0.tar.gz 11:38:27 Installing build dependencies: started 11:38:29 Installing build dependencies: finished with status 'done' 11:38:29 Getting requirements to build wheel: started 11:38:29 Getting requirements to build wheel: finished with status 'done' 11:38:29 Preparing metadata (pyproject.toml): started 11:38:29 Preparing metadata (pyproject.toml): finished with status 'done' 11:38:29 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0) 11:38:29 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0) 11:38:29 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 11:38:30 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0) 11:38:30 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB) 11:38:30 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0) 11:38:30 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 11:38:30 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0) 11:38:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 11:38:30 Collecting django-csp (from omero-web==5.27.3.dev0) 11:38:30 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 11:38:30 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0) 11:38:30 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 11:38:30 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0) 11:38:30 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 11:38:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0) 11:38:30 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0) 11:38:30 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2) 11:38:30 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1) 11:38:30 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1) 11:38:30 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 11:38:30 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 11:38:30 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 11:38:30 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 11:38:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20) 11:38:30 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4) 11:38:30 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0) 11:38:30 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4) 11:38:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2) 11:38:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5) 11:38:30 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3) 11:38:30 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 11:38:31 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 11:38:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2) 11:38:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10) 11:38:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30) 11:38:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 11:38:31 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 11:38:31 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 11:38:31 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB) 11:38:31 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 11:38:31 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 11:38:31 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 11:38:31 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 11:38:31 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 11:38:31 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 11:38:31 Building wheels for collected packages: omero-web 11:38:31 Building wheel for omero-web (pyproject.toml): started 11:38:32 Building wheel for omero-web (pyproject.toml): finished with status 'done' 11:38:32 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766671 sha256=358869fa7cc2f059e0488783e47fac80026172ca71eeaf26fd153bbe416c30cf 11:38:32 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b 11:38:32 Successfully built omero-web 11:38:32 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 11:38:35 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 11:38:35 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 11:38:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 11:38:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 11:38:37 --2024-09-26 11:38:37-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 11:38:37 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.108.133, ... 11:38:37 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 11:38:37 HTTP request sent, awaiting response... 200 OK 11:38:37 Length: 98962 (97K) [text/plain] 11:38:37 Saving to: ‘Figure_To_Pdf.py’ 11:38:37 11:38:37 0K .......... .......... .......... .......... .......... 51% 3.63M 0s 11:38:37 50K .......... .......... .......... .......... ...... 100% 4.54M=0.02s 11:38:37 11:38:37 2024-09-26 11:38:37 (4.02 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962] 11:38:37 11:38:37 + chmod 755 Figure_To_Pdf.py 11:38:37 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 11:38:37 + omero config set omero.db.name OMERO-server 11:38:39 + omero config set omero.db.host pg 11:38:40 + omero config set omero.db.user postgres 11:38:42 + omero config set omero.data.dir /home/omero/omero-server-data 11:38:43 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 11:38:45 + omero config set omero.db.poolsize 25 11:38:47 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 11:38:48 + omero config set omero.security.trustStorePassword changeit 11:38:50 + omero config set omero.mail.config true 11:38:51 + omero config set omero.mail.from qa@openmicroscopy.org.uk 11:38:53 + omero config set omero.mail.host smtp.dundee.ac.uk 11:38:54 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 11:38:56 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 11:38:57 + omero certificates 11:38:59 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 11:38:59 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 11:38:59 + '[' false = true ']' 11:38:59 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 11:38:59 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 11:38:59 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG dbcommand => upgrade 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG dbhost => localhost 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG dbname => OMERO-server 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG dbpass => omero 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG dbuser => omero 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG rootpass => omero 11:38:59 2024-09-26 11:38:59,746 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 11:38:59 2024-09-26 11:38:59,746 [omego.extern] INFO Executing : omero version 11:39:01 OMERO.py version: 11:39:01 OMERO.server version: 11:39:01 5.6.3-513-4bf99efd43-ice36 11:39:01 5.19.6.dev0 11:39:01 2024-09-26 11:39:01,350 [omego.extern] INFO Completed [1.604 s] 11:39:01 2024-09-26 11:39:01,350 [omego.extern] DEBUG Using omero CLI from omero 11:39:01 2024-09-26 11:39:01,350 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 11:39:01 2024-09-26 11:39:01,350 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:39:01 2024-09-26 11:39:01,350 [omego.extern] INFO Executing : omero config get --show-password 11:39:02 2024-09-26 11:39:02,824 [omego.extern] INFO Completed [1.473 s] 11:39:02 2024-09-26 11:39:02,824 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:39:02 2024-09-26 11:39:02,825 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 11:39:03 2024-09-26 11:39:03,144 [omego.extern] INFO Completed [0.319 s] 11:39:03 2024-09-26 11:39:03,144 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 11:39:03 2024-09-26 11:39:03,145 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 11:39:03 11:39:03 2024-09-26 11:39:03,145 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:39:03 2024-09-26 11:39:03,145 [omego.extern] INFO Executing : omero config get --show-password 11:39:04 2024-09-26 11:39:04,551 [omego.extern] INFO Completed [1.407 s] 11:39:04 2024-09-26 11:39:04,552 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:39:04 2024-09-26 11:39:04,552 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 11:39:04 2024-09-26 11:39:04,938 [omego.extern] INFO Completed [0.386 s] 11:39:04 2024-09-26 11:39:04,938 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 11:39:04 2024-09-26 11:39:04,938 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 11:39:04 2024-09-26 11:39:04,938 [omego.extern] INFO Running [current environment]: omero config get --show-password 11:39:04 2024-09-26 11:39:04,938 [omego.extern] INFO Executing : omero config get --show-password 11:39:06 2024-09-26 11:39:06,418 [omego.extern] INFO Completed [1.480 s] 11:39:06 2024-09-26 11:39:06,418 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 11:39:06 2024-09-26 11:39:06,419 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 11:39:06 2024-09-26 11:39:06,893 [omego.extern] INFO Completed [0.474 s] 11:39:06 2024-09-26 11:39:06,893 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 11:39:06 2024-09-26 11:39:06,893 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 11:39:06 2024-09-26 11:39:06,895 [ omego.db] INFO Database is already at OMERO5.4__0 11:39:06 + export LANG=en_US.UTF-8 11:39:06 + LANG=en_US.UTF-8 11:39:06 + export LANGUAGE=en_US:en 11:39:06 + LANGUAGE=en_US:en 11:39:06 + export LC_ALL=en_US.UTF-8 11:39:06 + LC_ALL=en_US.UTF-8 11:39:06 + BUILD_ID=DONT_KILL_ME 11:39:06 + omero admin start 11:39:19 WARNING: lock files in /home/omero/omero-server-data 11:39:19 ---------------------------------------- 11:39:19 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock 11:39:19 ---------------------------------------- 11:39:19 11:39:19 You may want to stop all server processes and remove 11:39:19 these files manually. Lock files can remain after an 11:39:19 abrupt server outage and are especially frequent on 11:39:19 remotely mounted filesystems like NFS. 11:39:19 11:39:19 No descriptor given. Using etc/grid/default.xml 11:39:32 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 11:39:32 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 11:39:32 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 11:39:32 Waiting on startup. Use CTRL-C to exit 11:39:32 + omero admin waitup 11:39:34 Waiting on startup. Use CTRL-C to exit 11:39:34 + omero admin diagnostics 11:39:35 11:39:35 ================================================================================ 11:39:35 OMERO Diagnostics (admin) 11:39:35 ================================================================================ 11:39:35 11:39:35 Commands: java -version 11.0.24 (/usr/bin/java) 11:39:35 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 11:39:35 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 11:39:35 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 11:39:35 Commands: psql --version 16.4 (/usr/bin/psql) 11:39:35 Commands: openssl version 3.0.71 (/usr/bin/openssl) 11:39:35 11:39:35 Component: OMERO.py 5.19.6.dev0 11:39:35 Component: OMERO.server 5.6.3-513-4bf99efd43-ice36 11:39:35 11:39:35 Server: icegridnode running 11:39:35 Server: Blitz-0 active (pid = 2588, enabled) 11:39:35 Server: Indexer-0 activating (enabled) 11:39:35 Server: OMERO.Glacier2 active (pid = 2615, enabled) 11:39:35 Server: OMERO.IceStorm active (pid = 2639, enabled) 11:39:35 Server: Processor-0 activating (enabled) 11:39:35 Server: Tables-0 activating (enabled) 11:39:35 11:39:35 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 11:39:35 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1 11:39:35 Log files: DropBox.log n/a 11:39:35 Log files: FileServer.log n/a 11:39:35 Log files: Indexer-0.log 2.0 KB 11:39:35 Log files: MonitorServer.log n/a 11:39:35 Log files: Processor-0.log 592 B 11:39:35 Log files: Tables-0.log 841 B 11:39:35 Log files: TestDropBox.log n/a 11:39:35 Log files: master.err 180 B 11:39:35 Log files: master.out 30.1 KB 11:39:35 Log files: Total size 0.06 MB 11:39:35 11:39:35 11:39:35 Environment:OMERO_HOME=(unset) 11:39:35 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 11:39:35 Environment:OMERO_NODE=(unset) 11:39:35 Environment:OMERO_MASTER=(unset) 11:39:35 Environment:OMERO_USERDIR=(unset) 11:39:35 Environment:OMERO_TMPDIR=(unset) 11:39:35 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:39:35 Environment:PYTHONPATH=(unset) 11:39:35 Environment:ICE_HOME=/opt/ice-3.6.5 11:39:35 Environment:LD_LIBRARY_PATH=(unset) 11:39:35 Environment:DYLD_LIBRARY_PATH=(unset) 11:39:36 11:39:36 OMERO SSL port:4064 11:39:36 OMERO TCP port:4063 11:39:36 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 11:39:36 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 11:39:36 11:39:36 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 11:39:36 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 11:39:36 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 11:39:36 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 11:39:36 11:39:36 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 26 September 2024 24016381e979f5e411330995052e5832e262b93e 11:39:36 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 26 September 2024 24016381e979f5e411330995052e5832e262b93e 11:39:36 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 26 September 2024 24016381e979f5e411330995052e5832e262b93e 11:39:36 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 26 September 2024 a726ac272b244edbbc514263f4ca9dde970ac11a 11:39:36 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 11:39:36 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 11:39:36 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT 11:39:36 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 11:39:36 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 11:39:36 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 11:39:36 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 11:39:36 + deactivate 11:39:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 11:39:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:39:36 + export PATH 11:39:36 + unset _OLD_VIRTUAL_PATH 11:39:36 + '[' -n '' ']' 11:39:36 + '[' -n /bin/bash -o -n '' ']' 11:39:36 + hash -r 11:39:36 + '[' -n '' ']' 11:39:36 + unset VIRTUAL_ENV 11:39:36 + '[' '!' '' = nondestructive ']' 11:39:36 + unset -f deactivate 11:39:36 Finished: SUCCESS