04:48:15 Started by upstream project "Trigger" build number 228
04:48:15 originally caused by:
04:48:15 Started by user devspace
04:48:15 Running as SYSTEM
04:48:15 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
04:48:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10067724250219265178.sh
04:48:16 + source /home/settings.env
04:48:16 ++ OMERO_DB_HOST=pg
04:48:16 ++ OMERO_DB_USER=postgres
04:48:16 ++ OMERO_DB_PASS=
04:48:16 ++ OMERO_ROOT_PASS=omero
04:48:16 ++ OMERO_DATA_DIR=/OMERO
04:48:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
04:48:16 + OMERO_DB_NAME=OMERO-server
04:48:16 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
04:48:16 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
04:48:16 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
04:48:16 + OMERO_DATA_DIR=/home/omero/omero-server-data
04:48:16 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
04:48:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
04:48:16 ++ deactivate nondestructive
04:48:16 ++ '[' -n '' ']'
04:48:16 ++ '[' -n '' ']'
04:48:16 ++ '[' -n /bin/bash -o -n '' ']'
04:48:16 ++ hash -r
04:48:16 ++ '[' -n '' ']'
04:48:16 ++ unset VIRTUAL_ENV
04:48:16 ++ '[' '!' nondestructive = nondestructive ']'
04:48:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
04:48:16 ++ export VIRTUAL_ENV
04:48:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:48:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:48:16 ++ export PATH
04:48:16 ++ '[' -n '' ']'
04:48:16 ++ '[' -z '' ']'
04:48:16 ++ _OLD_VIRTUAL_PS1=
04:48:16 ++ PS1='(.venv3) '
04:48:16 ++ export PS1
04:48:16 ++ '[' -n /bin/bash -o -n '' ']'
04:48:16 ++ hash -r
04:48:16 + omero admin stop
04:48:24 Waiting on shutdown. Use CTRL-C to exit
04:48:24 .+ sleep 5
04:48:40 + deactivate
04:48:40 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
04:48:40 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:48:40 + export PATH
04:48:40 + unset _OLD_VIRTUAL_PATH
04:48:40 + '[' -n '' ']'
04:48:40 + '[' -n /bin/bash -o -n '' ']'
04:48:40 + hash -r
04:48:40 + '[' -n '' ']'
04:48:40 + unset VIRTUAL_ENV
04:48:40 + '[' '!' '' = nondestructive ']'
04:48:40 + unset -f deactivate
04:48:40 + rm -rf /home/omero/workspace/OMERO-server/.venv3
04:48:41 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
04:48:44 + '[' false = true ']'
04:48:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
04:48:44 Skipping PURGE_DATA:CleanDbAndRepo
04:48:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
04:48:49 Copied 1 artifact from "OMERO-build" build number 189
04:48:49 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 186
04:48:49 Copied 2 artifacts from "OMERO-build-build" build number 194
04:48:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2392065221413313042.sh
04:48:49 + source /home/settings.env
04:48:49 ++ OMERO_DB_HOST=pg
04:48:49 ++ OMERO_DB_USER=postgres
04:48:49 ++ OMERO_DB_PASS=
04:48:49 ++ OMERO_ROOT_PASS=omero
04:48:49 ++ OMERO_DATA_DIR=/OMERO
04:48:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
04:48:49 + OMERO_DB_NAME=OMERO-server
04:48:49 + OMERO_DATA_DIR=/home/omero/omero-server-data
04:48:49 + mkdir -p /home/omero/omero-server-data
04:48:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
04:48:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
04:48:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
04:48:49 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
04:48:49 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
04:48:49 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
04:48:49 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
04:48:49 ++ ls OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:48:49 + ZIP=OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:48:49 + '[' '!' -z '' ']'
04:48:49 + DIST=OMERO.server-5.6.3-513-f39b7a8d4f-ice36
04:48:49 + unzip OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:48:49 Archive: OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/blitz/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/grid/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/profiles/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/error/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/grid/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/luts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/luts/janelia/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/luts/ncsa_paledit/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/luts/wcif/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/analysis_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/annotation_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/export_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/figure_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/import_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/scripts/omero/util_scripts/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/server/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/share/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/share/licenses/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/misc/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__1/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__10/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__11/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__2/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__3/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__4/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__5/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__6/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__7/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__8/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3A__9/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3__4/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3__5/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3__6/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO3__7/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4.1__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4.2__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4.2__0/t/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4.3__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4.4__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO4__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.0__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.1__1/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.2__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__1/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__2/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__3/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/
04:48:49 creating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/var/
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/LICENSE.txt
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/backup.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/blitz/mail-senders.example
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/blitz/mail-server.example
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/build.properties
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/env.bat
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/env.sh
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/hibernate.properties
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/ice.config
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/logback-cli.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/logback-indexing-cli.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/logback-indexing.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/logback.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/mime.types
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/node1.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/node2.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/omero.properties
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/profiles/psql
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/rollover.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/Windows.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/error/maintainance.html
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/grid/README
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/grid/default.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/grid/templates.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/grid/windefault.xml
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/ice.config
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/internal.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/master.cfg
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/templates/robot.template
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/etc/testdropbox.config
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/history.rst
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/OMEZarrReader.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/activation.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aggdesigner-algorithm.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aircompressor.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/annotations.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/antlr.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aopalliance.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/avatica-core.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/avatica-metrics.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aws-java-sdk-core.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aws-java-sdk-kms.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/aws-java-sdk-s3.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/base.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-all.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-anim.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-awt-util.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-bridge.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-codec.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-constants.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-css.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-dom.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-ext.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-extension.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-gui-util.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-gvt.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-i18n.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-parser.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-rasterizer-ext.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-rasterizer.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-script.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-slideshow.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-squiggle-ext.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-squiggle.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-svg-dom.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-svgbrowser.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-svggen.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-svgpp.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-svgrasterizer.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-swing.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-transcoder.jar
04:48:49 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/lib/client/batik-ttf2svg.jar
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04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/psql-header.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/schema.sql
04:48:52 inflating: OMERO.server-5.6.3-513-f39b7a8d4f-ice36/sql/psql/OMERO5.4__0/views.sql
04:48:52 + rm -f OMERO.server-5.6.3-513-f39b7a8d4f-ice36.zip
04:48:52 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-513-f39b7a8d4f-ice36 /home/omero/workspace/OMERO-server/OMERO.server
04:48:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
04:48:52 ++ deactivate nondestructive
04:48:52 ++ '[' -n '' ']'
04:48:52 ++ '[' -n '' ']'
04:48:52 ++ '[' -n /bin/bash -o -n '' ']'
04:48:52 ++ hash -r
04:48:52 ++ '[' -n '' ']'
04:48:52 ++ unset VIRTUAL_ENV
04:48:52 ++ '[' '!' nondestructive = nondestructive ']'
04:48:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
04:48:52 ++ export VIRTUAL_ENV
04:48:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:48:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:48:52 ++ export PATH
04:48:52 ++ '[' -n '' ']'
04:48:52 ++ '[' -z '' ']'
04:48:52 ++ _OLD_VIRTUAL_PS1=
04:48:52 ++ PS1='(.venv3) '
04:48:52 ++ export PS1
04:48:52 ++ '[' -n /bin/bash -o -n '' ']'
04:48:52 ++ hash -r
04:48:52 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
04:48:52 Collecting zeroc-ice==3.6.5
04:48:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
04:48:54 Installing collected packages: zeroc-ice
04:48:55 Successfully installed zeroc-ice-3.6.5
04:48:55 + pip install -U pip future
04:48:56 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
04:48:56 Collecting pip
04:48:56 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
04:48:57 Collecting future
04:48:57 Using cached future-1.0.0-py3-none-any.whl (491 kB)
04:48:57 Installing collected packages: pip, future
04:48:57 Attempting uninstall: pip
04:48:57 Found existing installation: pip 21.2.3
04:48:57 Uninstalling pip-21.2.3:
04:48:57 Successfully uninstalled pip-21.2.3
04:48:58 Successfully installed future-1.0.0 pip-24.2
04:48:58 + pip install markdown
04:48:59 Collecting markdown
04:48:59 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
04:48:59 Collecting importlib-metadata>=4.4 (from markdown)
04:48:59 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
04:49:00 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
04:49:00 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
04:49:00 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
04:49:00 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
04:49:00 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
04:49:00 Installing collected packages: zipp, importlib-metadata, markdown
04:49:00 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
04:49:00 + pip install reportlab
04:49:01 Collecting reportlab
04:49:01 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
04:49:01 Collecting pillow>=9.0.0 (from reportlab)
04:49:01 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
04:49:02 Collecting chardet (from reportlab)
04:49:02 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
04:49:02 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
04:49:02 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
04:49:02 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
04:49:02 Installing collected packages: pillow, chardet, reportlab
04:49:03 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
04:49:04 + pip install omego
04:49:04 Collecting omego
04:49:04 Using cached omego-0.7.0-py3-none-any.whl
04:49:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
04:49:04 Collecting yaclifw>=0.1.1 (from omego)
04:49:04 Using cached yaclifw-0.2.0-py3-none-any.whl
04:49:04 Collecting six (from yaclifw>=0.1.1->omego)
04:49:04 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
04:49:04 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
04:49:04 Installing collected packages: six, yaclifw, omego
04:49:05 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
04:49:05 + pip install tables
04:49:05 Collecting tables
04:49:05 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
04:49:06 Collecting numpy>=1.19.0 (from tables)
04:49:06 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
04:49:06 Collecting numexpr>=2.6.2 (from tables)
04:49:06 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
04:49:06 Collecting packaging (from tables)
04:49:06 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
04:49:06 Collecting py-cpuinfo (from tables)
04:49:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
04:49:06 Collecting blosc2>=2.3.0 (from tables)
04:49:06 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
04:49:07 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
04:49:07 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
04:49:07 Collecting msgpack (from blosc2>=2.3.0->tables)
04:49:07 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
04:49:07 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
04:49:07 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
04:49:07 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
04:49:07 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
04:49:08 Using cached packaging-24.1-py3-none-any.whl (53 kB)
04:49:08 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
04:49:08 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
04:49:08 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
04:49:08 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
04:49:14 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
04:49:14 + pip install jinja2
04:49:15 Collecting jinja2
04:49:15 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
04:49:15 Collecting MarkupSafe>=2.0 (from jinja2)
04:49:15 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
04:49:15 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
04:49:15 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
04:49:15 Installing collected packages: MarkupSafe, jinja2
04:49:15 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
04:49:15 + pip install omero-py
04:49:16 Collecting omero-py
04:49:16 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
04:49:16 Collecting urllib3<2 (from omero-py)
04:49:16 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
04:49:16 Collecting appdirs (from omero-py)
04:49:16 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
04:49:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
04:49:16 Collecting numpy<2 (from omero-py)
04:49:16 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
04:49:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
04:49:16 Collecting PyYAML (from omero-py)
04:49:16 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
04:49:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
04:49:16 Collecting requests (from omero-py)
04:49:16 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
04:49:17 Collecting portalocker (from omero-py)
04:49:17 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
04:49:17 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
04:49:17 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
04:49:17 Collecting idna<4,>=2.5 (from requests->omero-py)
04:49:17 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
04:49:17 Collecting certifi>=2017.4.17 (from requests->omero-py)
04:49:17 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
04:49:17 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
04:49:18 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
04:49:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
04:49:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
04:49:18 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
04:49:18 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
04:49:18 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
04:49:18 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
04:49:18 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
04:49:18 Using cached idna-3.10-py3-none-any.whl (70 kB)
04:49:18 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
04:49:19 Attempting uninstall: numpy
04:49:19 Found existing installation: numpy 2.0.2
04:49:19 Uninstalling numpy-2.0.2:
04:49:19 Successfully uninstalled numpy-2.0.2
04:49:23 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
04:49:23 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
04:49:24 Collecting omero-metadata
04:49:24 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-fumbq4j9/omero-metadata_7806b7c4772045b5a6a63b606608df9a
04:49:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-fumbq4j9/omero-metadata_7806b7c4772045b5a6a63b606608df9a
04:49:29 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 635484c6756850cba09e19fd86ba2dab6be80693
04:49:29 Installing build dependencies: started
04:49:31 Installing build dependencies: finished with status 'done'
04:49:31 Getting requirements to build wheel: started
04:49:31 Getting requirements to build wheel: finished with status 'done'
04:49:31 Preparing metadata (pyproject.toml): started
04:49:31 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
04:49:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
04:49:31 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
04:49:31 Collecting pandas (from omero-metadata)
04:49:31 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
04:49:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
04:49:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
04:49:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
04:49:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
04:49:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
04:49:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
04:49:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
04:49:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
04:49:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
04:49:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
04:49:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
04:49:32 Collecting pytz>=2020.1 (from pandas->omero-metadata)
04:49:32 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
04:49:32 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
04:49:32 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
04:49:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
04:49:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
04:49:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
04:49:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
04:49:32 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
04:49:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
04:49:32 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
04:49:33 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB)
04:49:33 Building wheels for collected packages: omero-metadata
04:49:33 Building wheel for omero-metadata (pyproject.toml): started
04:49:33 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
04:49:33 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=dd0b751e771b0c07380b3080b935905bf834fd2ba8d201051e47b74d4f0f838d
04:49:33 Stored in directory: /tmp/pip-ephem-wheel-cache-v_nppeo7/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
04:49:33 Successfully built omero-metadata
04:49:33 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
04:49:38 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2
04:49:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
04:49:39 Collecting omero-cli-render
04:49:39 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-446rqt63/omero-cli-render_48341ced3b1646d693e3a582fc88dd44
04:49:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-446rqt63/omero-cli-render_48341ced3b1646d693e3a582fc88dd44
04:49:40 Running command git checkout -b merge_ci --track origin/merge_ci
04:49:41 Switched to a new branch 'merge_ci'
04:49:41 branch 'merge_ci' set up to track 'origin/merge_ci'.
04:49:41 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 72d4da2ebc19f9c2a7fde47ab0a12d17ec537613
04:49:41 Installing build dependencies: started
04:49:43 Installing build dependencies: finished with status 'done'
04:49:43 Getting requirements to build wheel: started
04:49:43 Getting requirements to build wheel: finished with status 'done'
04:49:43 Preparing metadata (pyproject.toml): started
04:49:43 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:43 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
04:49:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
04:49:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
04:49:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
04:49:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
04:49:43 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
04:49:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
04:49:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
04:49:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
04:49:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
04:49:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
04:49:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
04:49:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
04:49:43 Building wheels for collected packages: omero-cli-render
04:49:43 Building wheel for omero-cli-render (pyproject.toml): started
04:49:43 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
04:49:43 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=b023efca7e30ed07f658431e29f28dcb2ef3c41b42e8f0ecc7eb0dc9999be010
04:49:43 Stored in directory: /tmp/pip-ephem-wheel-cache-w36hj0b7/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
04:49:43 Successfully built omero-cli-render
04:49:43 Installing collected packages: omero-cli-render
04:49:43 Successfully installed omero-cli-render-0.8.2.dev0
04:49:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
04:49:44 Collecting omero-cli-duplicate
04:49:44 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-gin5ngyh/omero-cli-duplicate_18d4b44bad3340f4ac1a90066f302e4c
04:49:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-gin5ngyh/omero-cli-duplicate_18d4b44bad3340f4ac1a90066f302e4c
04:49:45 Running command git checkout -b merge_ci --track origin/merge_ci
04:49:45 Switched to a new branch 'merge_ci'
04:49:45 branch 'merge_ci' set up to track 'origin/merge_ci'.
04:49:45 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 7ce2207a5443f7cd4651afea9bc9aad62ad9e5a3
04:49:45 Installing build dependencies: started
04:49:47 Installing build dependencies: finished with status 'done'
04:49:47 Getting requirements to build wheel: started
04:49:47 Getting requirements to build wheel: finished with status 'done'
04:49:47 Preparing metadata (pyproject.toml): started
04:49:48 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
04:49:48 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
04:49:48 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
04:49:48 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
04:49:48 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
04:49:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
04:49:48 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
04:49:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
04:49:48 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
04:49:48 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
04:49:48 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
04:49:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
04:49:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
04:49:48 Building wheels for collected packages: omero-cli-duplicate
04:49:48 Building wheel for omero-cli-duplicate (pyproject.toml): started
04:49:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
04:49:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=05245b6f0c452bd29198f3e35d9deb3cf831315e21c84a7f339f5b421bdb71df
04:49:48 Stored in directory: /tmp/pip-ephem-wheel-cache-gni67oqq/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
04:49:48 Successfully built omero-cli-duplicate
04:49:48 Installing collected packages: omero-cli-duplicate
04:49:48 Successfully installed omero-cli-duplicate-0.4.1.dev0
04:49:48 + pip install omero-certificates
04:49:49 Collecting omero-certificates
04:49:49 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
04:49:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
04:49:49 Collecting distro==1.8.0 (from omero-certificates)
04:49:49 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
04:49:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
04:49:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
04:49:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
04:49:49 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
04:49:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
04:49:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
04:49:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
04:49:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
04:49:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
04:49:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
04:49:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
04:49:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
04:49:49 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
04:49:49 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
04:49:49 Installing collected packages: distro, omero-certificates
04:49:49 Successfully installed distro-1.8.0 omero-certificates-0.3.2
04:49:49 + for x in *.tar.gz
04:49:49 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
04:49:49 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
04:49:50 Installing build dependencies: started
04:49:51 Installing build dependencies: finished with status 'done'
04:49:51 Getting requirements to build wheel: started
04:49:52 Getting requirements to build wheel: finished with status 'done'
04:49:52 Preparing metadata (pyproject.toml): started
04:49:52 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:52 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
04:49:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
04:49:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
04:49:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
04:49:52 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
04:49:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
04:49:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
04:49:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
04:49:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
04:49:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
04:49:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
04:49:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
04:49:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
04:49:52 Building wheels for collected packages: omero-dropbox
04:49:52 Building wheel for omero-dropbox (pyproject.toml): started
04:49:52 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
04:49:52 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=ce64d024aeac68e9f4d25700a933f0e73bf62f84482c2ae7da11fa498732484c
04:49:52 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
04:49:52 Successfully built omero-dropbox
04:49:52 Installing collected packages: omero-dropbox
04:49:52 Successfully installed omero-dropbox-5.7.1.dev0
04:49:53 + for x in *.tar.gz
04:49:53 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
04:49:53 Processing ./omero_marshal-0.9.1.dev0.tar.gz
04:49:53 Installing build dependencies: started
04:49:55 Installing build dependencies: finished with status 'done'
04:49:55 Getting requirements to build wheel: started
04:49:55 Getting requirements to build wheel: finished with status 'done'
04:49:55 Preparing metadata (pyproject.toml): started
04:49:55 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:55 Building wheels for collected packages: omero_marshal
04:49:55 Building wheel for omero_marshal (pyproject.toml): started
04:49:56 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
04:49:56 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=654456d6d23b3c12b63b06e2362548cd9d9740ed0a75e5244db443a56410b41f
04:49:56 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
04:49:56 Successfully built omero_marshal
04:49:56 Installing collected packages: omero_marshal
04:49:56 Successfully installed omero_marshal-0.9.1.dev0
04:49:56 + for x in *.tar.gz
04:49:56 + pip install -U omero_py-5.19.6.dev0.tar.gz
04:49:56 Processing ./omero_py-5.19.6.dev0.tar.gz
04:49:57 Installing build dependencies: started
04:49:59 Installing build dependencies: finished with status 'done'
04:49:59 Getting requirements to build wheel: started
04:49:59 Getting requirements to build wheel: finished with status 'done'
04:49:59 Preparing metadata (pyproject.toml): started
04:49:59 Preparing metadata (pyproject.toml): finished with status 'done'
04:49:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
04:49:59 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
04:49:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
04:49:59 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
04:49:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
04:49:59 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
04:49:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
04:49:59 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
04:49:59 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
04:49:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
04:49:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
04:49:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
04:49:59 Building wheels for collected packages: omero-py
04:49:59 Building wheel for omero-py (pyproject.toml): started
04:50:00 Building wheel for omero-py (pyproject.toml): finished with status 'done'
04:50:00 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783191 sha256=9b3e948469fdb584a589dd9167fa4af08e68a5133468eefd9164a9e0abca725b
04:50:00 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
04:50:00 Successfully built omero-py
04:50:00 Installing collected packages: omero-py
04:50:00 Attempting uninstall: omero-py
04:50:00 Found existing installation: omero-py 5.19.5
04:50:01 Uninstalling omero-py-5.19.5:
04:50:01 Successfully uninstalled omero-py-5.19.5
04:50:03 Successfully installed omero-py-5.19.6.dev0
04:50:04 + for x in *.tar.gz
04:50:04 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
04:50:04 Processing ./omero_scripts-5.8.4.dev0.tar.gz
04:50:04 Installing build dependencies: started
04:50:06 Installing build dependencies: finished with status 'done'
04:50:06 Getting requirements to build wheel: started
04:50:06 Getting requirements to build wheel: finished with status 'done'
04:50:06 Preparing metadata (pyproject.toml): started
04:50:07 Preparing metadata (pyproject.toml): finished with status 'done'
04:50:07 Building wheels for collected packages: omero-scripts
04:50:07 Building wheel for omero-scripts (pyproject.toml): started
04:50:08 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
04:50:08 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=a55a1fbd05e0bdd01e8f155cc39422773190256fdead8c50ca4dd25a3e321aa4
04:50:08 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
04:50:08 Successfully built omero-scripts
04:50:08 Installing collected packages: omero-scripts
04:50:08 Successfully installed omero-scripts-5.8.4.dev0
04:50:08 + for x in *.tar.gz
04:50:08 + pip install -U omero_web-5.27.3.dev0.tar.gz
04:50:08 Processing ./omero_web-5.27.3.dev0.tar.gz
04:50:09 Installing build dependencies: started
04:50:11 Installing build dependencies: finished with status 'done'
04:50:11 Getting requirements to build wheel: started
04:50:11 Getting requirements to build wheel: finished with status 'done'
04:50:11 Preparing metadata (pyproject.toml): started
04:50:11 Preparing metadata (pyproject.toml): finished with status 'done'
04:50:11 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
04:50:11 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
04:50:11 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
04:50:12 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
04:50:12 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
04:50:12 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
04:50:12 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
04:50:12 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
04:50:12 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
04:50:12 Collecting django-csp (from omero-web==5.27.3.dev0)
04:50:12 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
04:50:12 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
04:50:12 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
04:50:12 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
04:50:12 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
04:50:12 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
04:50:12 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
04:50:12 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
04:50:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
04:50:12 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
04:50:12 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
04:50:12 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
04:50:12 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
04:50:12 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
04:50:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
04:50:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
04:50:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
04:50:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
04:50:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
04:50:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
04:50:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
04:50:12 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
04:50:12 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
04:50:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
04:50:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
04:50:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
04:50:13 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
04:50:13 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
04:50:13 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
04:50:13 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
04:50:13 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
04:50:13 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
04:50:13 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
04:50:13 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
04:50:13 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
04:50:13 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
04:50:13 Building wheels for collected packages: omero-web
04:50:13 Building wheel for omero-web (pyproject.toml): started
04:50:14 Building wheel for omero-web (pyproject.toml): finished with status 'done'
04:50:14 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766671 sha256=f930189d124d4149502594316b24337f0ae921734b2489f50041ad2442215472
04:50:14 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
04:50:14 Successfully built omero-web
04:50:14 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
04:50:17 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
04:50:17 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
04:50:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
04:50:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
04:50:19 --2024-09-27 04:50:19-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
04:50:19 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ...
04:50:19 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
04:50:19 HTTP request sent, awaiting response... 200 OK
04:50:20 Length: 98962 (97K) [text/plain]
04:50:20 Saving to: ‘Figure_To_Pdf.py’
04:50:20
04:50:20 0K .......... .......... .......... .......... .......... 51% 2.96M 0s
04:50:20 50K .......... .......... .......... .......... ...... 100% 6.66M=0.02s
04:50:20
04:50:20 2024-09-27 04:50:20 (4.05 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
04:50:20
04:50:20 + chmod 755 Figure_To_Pdf.py
04:50:20 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
04:50:20 + omero config set omero.db.name OMERO-server
04:50:21 + omero config set omero.db.host pg
04:50:23 + omero config set omero.db.user postgres
04:50:24 + omero config set omero.data.dir /home/omero/omero-server-data
04:50:26 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
04:50:27 + omero config set omero.db.poolsize 25
04:50:29 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
04:50:30 + omero config set omero.security.trustStorePassword changeit
04:50:32 + omero config set omero.mail.config true
04:50:34 + omero config set omero.mail.from qa@openmicroscopy.org.uk
04:50:35 + omero config set omero.mail.host smtp.dundee.ac.uk
04:50:36 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
04:50:38 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
04:50:40 + omero certificates
04:50:41 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
04:50:41 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
04:50:42 + '[' false = true ']'
04:50:42 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
04:50:42 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
04:50:42 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
04:50:42 2024-09-27 04:50:42,223 [ omego.db] DEBUG dbcommand => upgrade
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG dbhost => localhost
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG dbname => OMERO-server
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG dbpass => omero
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG dbuser => omero
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG rootpass => omero
04:50:42 2024-09-27 04:50:42,224 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
04:50:42 2024-09-27 04:50:42,224 [omego.extern] INFO Executing : omero version
04:50:43 OMERO.py version:
04:50:43 OMERO.server version:
04:50:43 5.6.3-513-f39b7a8d4f-ice36
04:50:43 5.19.6.dev0
04:50:43 2024-09-27 04:50:43,764 [omego.extern] INFO Completed [1.540 s]
04:50:43 2024-09-27 04:50:43,764 [omego.extern] DEBUG Using omero CLI from omero
04:50:43 2024-09-27 04:50:43,764 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
04:50:43 2024-09-27 04:50:43,764 [omego.extern] INFO Running [current environment]: omero config get --show-password
04:50:43 2024-09-27 04:50:43,765 [omego.extern] INFO Executing : omero config get --show-password
04:50:45 2024-09-27 04:50:45,528 [omego.extern] INFO Completed [1.763 s]
04:50:45 2024-09-27 04:50:45,528 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
04:50:45 2024-09-27 04:50:45,528 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
04:50:45 2024-09-27 04:50:45,907 [omego.extern] INFO Completed [0.378 s]
04:50:45 2024-09-27 04:50:45,907 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
04:50:45 2024-09-27 04:50:45,907 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
04:50:45
04:50:45 2024-09-27 04:50:45,907 [omego.extern] INFO Running [current environment]: omero config get --show-password
04:50:45 2024-09-27 04:50:45,907 [omego.extern] INFO Executing : omero config get --show-password
04:50:47 2024-09-27 04:50:47,537 [omego.extern] INFO Completed [1.630 s]
04:50:47 2024-09-27 04:50:47,537 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
04:50:47 2024-09-27 04:50:47,538 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
04:50:47 2024-09-27 04:50:47,548 [omego.extern] INFO Completed [0.010 s]
04:50:47 2024-09-27 04:50:47,548 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n'
04:50:47 2024-09-27 04:50:47,548 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
04:50:47 2024-09-27 04:50:47,548 [omego.extern] INFO Running [current environment]: omero config get --show-password
04:50:47 2024-09-27 04:50:47,548 [omego.extern] INFO Executing : omero config get --show-password
04:50:49 2024-09-27 04:50:49,179 [omego.extern] INFO Completed [1.631 s]
04:50:49 2024-09-27 04:50:49,180 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
04:50:49 2024-09-27 04:50:49,180 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
04:50:49 2024-09-27 04:50:49,358 [omego.extern] INFO Completed [0.178 s]
04:50:49 2024-09-27 04:50:49,358 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
04:50:49 2024-09-27 04:50:49,358 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
04:50:49 2024-09-27 04:50:49,360 [ omego.db] INFO Database is already at OMERO5.4__0
04:50:49 + export LANG=en_US.UTF-8
04:50:49 + LANG=en_US.UTF-8
04:50:49 + export LANGUAGE=en_US:en
04:50:49 + LANGUAGE=en_US:en
04:50:49 + export LC_ALL=en_US.UTF-8
04:50:49 + LC_ALL=en_US.UTF-8
04:50:49 + BUILD_ID=DONT_KILL_ME
04:50:49 + omero admin start
04:51:00 No descriptor given. Using etc/grid/default.xml
04:51:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
04:51:13 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
04:51:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
04:51:13 Waiting on startup. Use CTRL-C to exit
04:51:13 + omero admin waitup
04:51:14 Waiting on startup. Use CTRL-C to exit
04:51:15 + omero admin diagnostics
04:51:16
04:51:16 ================================================================================
04:51:16 OMERO Diagnostics (admin)
04:51:16 ================================================================================
04:51:16
04:51:16 Commands: java -version 11.0.24 (/usr/bin/java)
04:51:16 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
04:51:16 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
04:51:16 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
04:51:16 Commands: psql --version 16.4 (/usr/bin/psql)
04:51:16 Commands: openssl version 3.0.71 (/usr/bin/openssl)
04:51:16
04:51:16 Component: OMERO.py 5.19.6.dev0
04:51:16 Component: OMERO.server 5.6.3-513-f39b7a8d4f-ice36
04:51:16
04:51:16 Server: icegridnode running
04:51:16 Server: Blitz-0 active (pid = 15589, enabled)
04:51:16 Server: Indexer-0 activating (enabled)
04:51:16 Server: OMERO.Glacier2 active (pid = 15616, enabled)
04:51:16 Server: OMERO.IceStorm active (pid = 15643, enabled)
04:51:16 Server: Processor-0 activating (enabled)
04:51:16 Server: Tables-0 activating (enabled)
04:51:16
04:51:16 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
04:51:16 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
04:51:16 Log files: DropBox.log n/a
04:51:16 Log files: FileServer.log n/a
04:51:16 Log files: Indexer-0.log 2.4 KB
04:51:16 Log files: MonitorServer.log n/a
04:51:16 Log files: Processor-0.log 592 B
04:51:16 Log files: Tables-0.log 841 B
04:51:16 Log files: TestDropBox.log n/a
04:51:16 Log files: master.err 180 B
04:51:16 Log files: master.out 30.1 KB
04:51:16 Log files: Total size 0.06 MB
04:51:16
04:51:16
04:51:16 Environment:OMERO_HOME=(unset)
04:51:16 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
04:51:16 Environment:OMERO_NODE=(unset)
04:51:16 Environment:OMERO_MASTER=(unset)
04:51:16 Environment:OMERO_USERDIR=(unset)
04:51:16 Environment:OMERO_TMPDIR=(unset)
04:51:16 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:51:16 Environment:PYTHONPATH=(unset)
04:51:16 Environment:ICE_HOME=/opt/ice-3.6.5
04:51:16 Environment:LD_LIBRARY_PATH=(unset)
04:51:16 Environment:DYLD_LIBRARY_PATH=(unset)
04:51:17
04:51:17 OMERO SSL port:4064
04:51:17 OMERO TCP port:4063
04:51:17 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
04:51:17 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
04:51:17
04:51:17 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
04:51:17 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
04:51:17 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
04:51:17 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
04:51:17
04:51:17 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 27 September 2024 ef4cb827ac978fbdd352c9a94621d2d35ae7f301
04:51:17 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 27 September 2024 ef4cb827ac978fbdd352c9a94621d2d35ae7f301
04:51:17 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 27 September 2024 ef4cb827ac978fbdd352c9a94621d2d35ae7f301
04:51:17 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 27 September 2024 e5d29c951d21224fe7e6cfd45999260d769a652b
04:51:17 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
04:51:17 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
04:51:17 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
04:51:17 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
04:51:17 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
04:51:17 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
04:51:17 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
04:51:17 + deactivate
04:51:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
04:51:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:51:17 + export PATH
04:51:17 + unset _OLD_VIRTUAL_PATH
04:51:17 + '[' -n '' ']'
04:51:17 + '[' -n /bin/bash -o -n '' ']'
04:51:17 + hash -r
04:51:17 + '[' -n '' ']'
04:51:17 + unset VIRTUAL_ENV
04:51:17 + '[' '!' '' = nondestructive ']'
04:51:17 + unset -f deactivate
04:51:17 Finished: SUCCESS
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