00:52:40 Started by upstream project "Trigger" build number 253 00:52:40 originally caused by: 00:52:40 Started by timer 00:52:40 Running as SYSTEM 00:52:40 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:52:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11894822111597988708.sh 00:52:40 + source /home/settings.env 00:52:40 ++ OMERO_DB_HOST=pg 00:52:40 ++ OMERO_DB_USER=postgres 00:52:40 ++ OMERO_DB_PASS= 00:52:40 ++ OMERO_ROOT_PASS=omero 00:52:40 ++ OMERO_DATA_DIR=/OMERO 00:52:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:52:40 + OMERO_DB_NAME=OMERO-server 00:52:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:52:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:40 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:52:40 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:52:40 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:52:41 ++ deactivate nondestructive 00:52:41 ++ '[' -n '' ']' 00:52:41 ++ '[' -n '' ']' 00:52:41 ++ '[' -n /bin/bash -o -n '' ']' 00:52:41 ++ hash -r 00:52:41 ++ '[' -n '' ']' 00:52:41 ++ unset VIRTUAL_ENV 00:52:41 ++ '[' '!' nondestructive = nondestructive ']' 00:52:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:52:41 ++ export VIRTUAL_ENV 00:52:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:41 ++ export PATH 00:52:41 ++ '[' -n '' ']' 00:52:41 ++ '[' -z '' ']' 00:52:41 ++ _OLD_VIRTUAL_PS1= 00:52:41 ++ PS1='(.venv3) ' 00:52:41 ++ export PS1 00:52:41 ++ '[' -n /bin/bash -o -n '' ']' 00:52:41 ++ hash -r 00:52:41 + omero admin stop 00:52:50 Waiting on shutdown. Use CTRL-C to exit 00:52:50 .+ sleep 5 00:53:06 + deactivate 00:53:06 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:53:06 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:53:06 + export PATH 00:53:06 + unset _OLD_VIRTUAL_PATH 00:53:06 + '[' -n '' ']' 00:53:06 + '[' -n /bin/bash -o -n '' ']' 00:53:06 + hash -r 00:53:06 + '[' -n '' ']' 00:53:06 + unset VIRTUAL_ENV 00:53:06 + '[' '!' '' = nondestructive ']' 00:53:06 + unset -f deactivate 00:53:06 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:53:06 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:53:10 + '[' false = true ']' 00:53:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:53:10 Skipping PURGE_DATA:CleanDbAndRepo 00:53:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:53:19 Copied 1 artifact from "OMERO-build" build number 209 00:53:19 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 206 00:53:19 Copied 2 artifacts from "OMERO-build-build" build number 217 00:53:19 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12884814748047239661.sh 00:53:20 + source /home/settings.env 00:53:20 ++ OMERO_DB_HOST=pg 00:53:20 ++ OMERO_DB_USER=postgres 00:53:20 ++ OMERO_DB_PASS= 00:53:20 ++ OMERO_ROOT_PASS=omero 00:53:20 ++ OMERO_DATA_DIR=/OMERO 00:53:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:53:20 + OMERO_DB_NAME=OMERO-server 00:53:20 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:53:20 + mkdir -p /home/omero/omero-server-data 00:53:20 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:53:20 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:53:20 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:53:20 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:53:20 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:53:20 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:53:20 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:53:20 ++ ls OMERO.server-5.6.3-513-7e217d8e17-ice36.zip 00:53:20 + ZIP=OMERO.server-5.6.3-513-7e217d8e17-ice36.zip 00:53:20 + '[' '!' -z '' ']' 00:53:20 + DIST=OMERO.server-5.6.3-513-7e217d8e17-ice36 00:53:20 + unzip OMERO.server-5.6.3-513-7e217d8e17-ice36.zip 00:53:20 Archive: OMERO.server-5.6.3-513-7e217d8e17-ice36.zip 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/blitz/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/grid/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/profiles/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/error/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/grid/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/luts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/luts/janelia/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/luts/ncsa_paledit/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/luts/wcif/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/analysis_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/annotation_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/export_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/figure_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/import_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/scripts/omero/util_scripts/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/server/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/share/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/share/licenses/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/misc/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__1/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__10/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__11/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__2/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__3/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__4/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__5/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__6/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__7/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__8/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3A__9/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3__4/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3__5/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3__6/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO3__7/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4.1__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4.2__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4.2__0/t/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4.3__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4.4__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.0__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.1__1/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.2__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__1/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__2/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__3/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/ 00:53:20 creating: OMERO.server-5.6.3-513-7e217d8e17-ice36/var/ 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/LICENSE.txt 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/backup.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/blitz/mail-senders.example 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/blitz/mail-server.example 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/build.properties 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/env.bat 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/env.sh 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/hibernate.properties 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/ice.config 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/logback-cli.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/logback-indexing-cli.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/logback-indexing.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/logback.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/mime.types 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/node1.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/node2.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/omero.properties 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/profiles/psql 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/rollover.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/Windows.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/error/maintainance.html 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/grid/README 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/grid/default.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/grid/templates.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/grid/windefault.xml 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/ice.config 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/internal.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/master.cfg 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/templates/robot.template 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/etc/testdropbox.config 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/history.rst 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/OMEZarrReader.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/activation.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aggdesigner-algorithm.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aircompressor.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/annotations.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/antlr.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aopalliance.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/avatica-core.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/avatica-metrics.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aws-java-sdk-core.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aws-java-sdk-kms.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/aws-java-sdk-s3.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/base.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-all.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-anim.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-awt-util.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-bridge.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-codec.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-constants.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-css.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-dom.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-ext.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-extension.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-gui-util.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-gvt.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-i18n.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-parser.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-rasterizer-ext.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-rasterizer.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-script.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-slideshow.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-squiggle-ext.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-squiggle.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-svg-dom.jar 00:53:20 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/lib/client/batik-svgbrowser.jar 00:53:20 inflating: 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OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/schema.sql 00:53:22 inflating: OMERO.server-5.6.3-513-7e217d8e17-ice36/sql/psql/OMERO5.4__0/views.sql 00:53:22 + rm -f OMERO.server-5.6.3-513-7e217d8e17-ice36.zip 00:53:22 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-513-7e217d8e17-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:53:22 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:53:22 ++ deactivate nondestructive 00:53:22 ++ '[' -n '' ']' 00:53:22 ++ '[' -n '' ']' 00:53:22 ++ '[' -n /bin/bash -o -n '' ']' 00:53:22 ++ hash -r 00:53:22 ++ '[' -n '' ']' 00:53:22 ++ unset VIRTUAL_ENV 00:53:22 ++ '[' '!' nondestructive = nondestructive ']' 00:53:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:53:22 ++ export VIRTUAL_ENV 00:53:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:53:22 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:53:22 ++ export PATH 00:53:22 ++ '[' -n '' ']' 00:53:22 ++ '[' -z '' ']' 00:53:22 ++ _OLD_VIRTUAL_PS1= 00:53:22 ++ PS1='(.venv3) ' 00:53:22 ++ export PS1 00:53:22 ++ '[' -n /bin/bash -o -n '' ']' 00:53:22 ++ hash -r 00:53:22 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:53:23 Collecting zeroc-ice==3.6.5 00:53:23 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:53:25 Installing collected packages: zeroc-ice 00:53:26 Successfully installed zeroc-ice-3.6.5 00:53:26 + pip install -U pip future 00:53:26 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:53:26 Collecting pip 00:53:26 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 00:53:26 Collecting future 00:53:26 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:53:27 Installing collected packages: pip, future 00:53:27 Attempting uninstall: pip 00:53:27 Found existing installation: pip 21.2.3 00:53:27 Uninstalling pip-21.2.3: 00:53:27 Successfully uninstalled pip-21.2.3 00:53:28 Successfully installed future-1.0.0 pip-24.2 00:53:28 + pip install markdown 00:53:29 Collecting markdown 00:53:29 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 00:53:29 Collecting importlib-metadata>=4.4 (from markdown) 00:53:29 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) 00:53:29 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 00:53:29 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB) 00:53:29 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 00:53:29 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) 00:53:29 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB) 00:53:29 Installing collected packages: zipp, importlib-metadata, markdown 00:53:29 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2 00:53:30 + pip install reportlab 00:53:30 Collecting reportlab 00:53:30 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB) 00:53:31 Collecting pillow>=9.0.0 (from reportlab) 00:53:31 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB) 00:53:31 Collecting chardet (from reportlab) 00:53:31 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:53:31 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB) 00:53:31 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB) 00:53:32 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:53:32 Installing collected packages: pillow, chardet, reportlab 00:53:33 Successfully installed chardet-5.2.0 pillow-11.0.0 reportlab-4.2.5 00:53:33 + pip install omego 00:53:34 Collecting omego 00:53:34 Using cached omego-0.7.0-py3-none-any.whl 00:53:34 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:53:34 Collecting yaclifw>=0.1.1 (from omego) 00:53:34 Using cached yaclifw-0.2.0-py3-none-any.whl 00:53:34 Collecting six (from yaclifw>=0.1.1->omego) 00:53:34 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:53:34 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:53:34 Installing collected packages: six, yaclifw, omego 00:53:34 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:53:34 + pip install tables 00:53:35 Collecting tables 00:53:35 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:53:35 Collecting numpy>=1.19.0 (from tables) 00:53:35 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:53:35 Collecting numexpr>=2.6.2 (from tables) 00:53:36 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 00:53:36 Collecting packaging (from tables) 00:53:36 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:53:36 Collecting py-cpuinfo (from tables) 00:53:36 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:53:36 Collecting blosc2>=2.3.0 (from tables) 00:53:36 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:53:36 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:53:36 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 00:53:36 Collecting msgpack (from blosc2>=2.3.0->tables) 00:53:36 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 00:53:36 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:53:36 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:53:36 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 00:53:36 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 00:53:37 Using cached packaging-24.1-py3-none-any.whl (53 kB) 00:53:37 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:53:37 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB) 00:53:37 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 00:53:37 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:53:41 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 00:53:41 + pip install jinja2 00:53:42 Collecting jinja2 00:53:42 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:53:42 Collecting MarkupSafe>=2.0 (from jinja2) 00:53:42 Downloading MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 00:53:42 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:53:42 Downloading MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB) 00:53:42 Installing collected packages: MarkupSafe, jinja2 00:53:42 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.4 00:53:42 + pip install omero-py 00:53:43 Collecting omero-py 00:53:43 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB) 00:53:43 Collecting urllib3<2 (from omero-py) 00:53:43 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 00:53:43 Collecting appdirs (from omero-py) 00:53:43 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:53:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:53:43 Collecting numpy<2 (from omero-py) 00:53:43 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:53:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.0.0) 00:53:44 Collecting PyYAML (from omero-py) 00:53:44 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:53:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:53:44 Collecting requests (from omero-py) 00:53:44 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:53:44 Collecting portalocker (from omero-py) 00:53:44 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 00:53:44 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:53:44 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB) 00:53:44 Collecting idna<4,>=2.5 (from requests->omero-py) 00:53:44 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 00:53:44 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:53:44 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) 00:53:44 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB) 00:53:44 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:53:45 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:53:45 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:53:45 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 00:53:45 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 00:53:45 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:53:45 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) 00:53:45 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB) 00:53:45 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:53:45 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:53:45 Attempting uninstall: numpy 00:53:45 Found existing installation: numpy 2.0.2 00:53:45 Uninstalling numpy-2.0.2: 00:53:45 Successfully uninstalled numpy-2.0.2 00:53:50 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.4.0 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20 00:53:50 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:53:50 Collecting omero-metadata 00:53:50 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-4prt00ht/omero-metadata_1bd4efdcac9b4a67a550f84c9c418131 00:53:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-4prt00ht/omero-metadata_1bd4efdcac9b4a67a550f84c9c418131 00:53:53 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit d7301ebd340f3b1447f1ca75b5d5c25666b4100e 00:53:53 Installing build dependencies: started 00:53:55 Installing build dependencies: finished with status 'done' 00:53:55 Getting requirements to build wheel: started 00:53:55 Getting requirements to build wheel: finished with status 'done' 00:53:55 Preparing metadata (pyproject.toml): started 00:53:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5) 00:53:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 00:53:55 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 00:53:59 Collecting pandas (from omero-metadata) 00:53:59 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 00:53:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 00:53:59 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:53:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:53:59 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:53:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.0.0) 00:53:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:53:59 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:53:59 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 00:53:59 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2) 00:53:59 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:53:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:53:59 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:53:59 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 00:53:59 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:53:59 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) 00:53:59 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:53:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.0) 00:53:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 00:53:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30) 00:53:59 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:53:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:53:59 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) 00:54:00 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB) 00:54:00 Building wheels for collected packages: omero-metadata 00:54:00 Building wheel for omero-metadata (pyproject.toml): started 00:54:00 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:54:00 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=963465dbd11333bcff4c7c6a7e259c8739f852f5f64978cdced7486f2ef2e60f 00:54:00 Stored in directory: /tmp/pip-ephem-wheel-cache-1ea_v3o2/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:54:00 Successfully built omero-metadata 00:54:00 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:54:05 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2 00:54:05 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:54:06 Collecting omero-cli-render 00:54:06 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-f_1vcpd3/omero-cli-render_726d8df9b4b24bec97a9a1b90acdd2ff 00:54:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-f_1vcpd3/omero-cli-render_726d8df9b4b24bec97a9a1b90acdd2ff 00:54:07 Running command git checkout -b merge_ci --track origin/merge_ci 00:54:07 Switched to a new branch 'merge_ci' 00:54:07 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:54:07 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 4c267dd1d76104c122b2b7c84ed667c9d93b7921 00:54:07 Installing build dependencies: started 00:54:09 Installing build dependencies: finished with status 'done' 00:54:09 Getting requirements to build wheel: started 00:54:09 Getting requirements to build wheel: finished with status 'done' 00:54:09 Preparing metadata (pyproject.toml): started 00:54:09 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 00:54:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5) 00:54:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 00:54:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:54:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:54:09 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:54:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.0.0) 00:54:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:54:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:54:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 00:54:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.0) 00:54:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 00:54:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30) 00:54:09 Building wheels for collected packages: omero-cli-render 00:54:09 Building wheel for omero-cli-render (pyproject.toml): started 00:54:09 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:54:09 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18030 sha256=719ffced60d52a2d6487c6fa0643eae88eb77ed998215eab51e5fa5938317edf 00:54:09 Stored in directory: /tmp/pip-ephem-wheel-cache-an7e8hdg/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:54:09 Successfully built omero-cli-render 00:54:09 Installing collected packages: omero-cli-render 00:54:09 Successfully installed omero-cli-render-0.8.2.dev0 00:54:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:54:10 Collecting omero-cli-duplicate 00:54:10 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-do2ht9qh/omero-cli-duplicate_816af4f54c524b298f765e3c035b8bf0 00:54:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-do2ht9qh/omero-cli-duplicate_816af4f54c524b298f765e3c035b8bf0 00:54:11 Running command git checkout -b merge_ci --track origin/merge_ci 00:54:11 Switched to a new branch 'merge_ci' 00:54:11 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:54:11 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit ca58c79fdf49f9a31e439c113811646e57090b95 00:54:11 Installing build dependencies: started 00:54:13 Installing build dependencies: finished with status 'done' 00:54:13 Getting requirements to build wheel: started 00:54:13 Getting requirements to build wheel: finished with status 'done' 00:54:13 Preparing metadata (pyproject.toml): started 00:54:13 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:13 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5) 00:54:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 00:54:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:54:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:54:13 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:54:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0) 00:54:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 00:54:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:54:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:54:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 00:54:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0) 00:54:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 00:54:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30) 00:54:13 Building wheels for collected packages: omero-cli-duplicate 00:54:13 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:54:14 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:54:14 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=b10c7e99cabbff03bd0358179b10d5b0e64bdde6157989bdd2a46b4cd6f20952 00:54:14 Stored in directory: /tmp/pip-ephem-wheel-cache-k2n9edpl/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:54:14 Successfully built omero-cli-duplicate 00:54:14 Installing collected packages: omero-cli-duplicate 00:54:14 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:54:14 + pip install omero-certificates 00:54:14 Collecting omero-certificates 00:54:14 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:54:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5) 00:54:15 Collecting distro==1.8.0 (from omero-certificates) 00:54:15 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:54:15 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 00:54:15 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:54:15 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:54:15 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:54:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0) 00:54:15 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 00:54:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:54:15 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:54:15 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 00:54:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0) 00:54:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 00:54:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30) 00:54:15 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:54:15 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:54:15 Installing collected packages: distro, omero-certificates 00:54:15 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:54:15 + for x in *.tar.gz 00:54:15 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:54:15 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:54:15 Installing build dependencies: started 00:54:17 Installing build dependencies: finished with status 'done' 00:54:17 Getting requirements to build wheel: started 00:54:18 Getting requirements to build wheel: finished with status 'done' 00:54:18 Preparing metadata (pyproject.toml): started 00:54:18 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:18 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5) 00:54:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 00:54:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:54:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:54:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:54:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0) 00:54:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 00:54:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:54:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:54:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 00:54:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0) 00:54:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 00:54:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30) 00:54:18 Building wheels for collected packages: omero-dropbox 00:54:18 Building wheel for omero-dropbox (pyproject.toml): started 00:54:18 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:54:18 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49058 sha256=0f9fc10c62618a7605b2a4ab23abcc5039760a3693b87caa131fd8b70204307c 00:54:18 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:54:18 Successfully built omero-dropbox 00:54:18 Installing collected packages: omero-dropbox 00:54:18 Successfully installed omero-dropbox-5.7.1.dev0 00:54:18 + for x in *.tar.gz 00:54:18 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:54:19 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:54:19 Installing build dependencies: started 00:54:21 Installing build dependencies: finished with status 'done' 00:54:21 Getting requirements to build wheel: started 00:54:21 Getting requirements to build wheel: finished with status 'done' 00:54:21 Preparing metadata (pyproject.toml): started 00:54:21 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:21 Building wheels for collected packages: omero_marshal 00:54:21 Building wheel for omero_marshal (pyproject.toml): started 00:54:22 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:54:22 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ca0ed3ef405c6e89eed23b4bedea172d1f4d9d78c9e6ffc37acda930d8f004b2 00:54:22 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:54:22 Successfully built omero_marshal 00:54:22 Installing collected packages: omero_marshal 00:54:22 Successfully installed omero_marshal-0.9.1.dev0 00:54:22 + for x in *.tar.gz 00:54:22 + pip install -U omero_py-5.19.6.dev0.tar.gz 00:54:22 Processing ./omero_py-5.19.6.dev0.tar.gz 00:54:23 Installing build dependencies: started 00:54:25 Installing build dependencies: finished with status 'done' 00:54:25 Getting requirements to build wheel: started 00:54:25 Getting requirements to build wheel: finished with status 'done' 00:54:25 Preparing metadata (pyproject.toml): started 00:54:25 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20) 00:54:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4) 00:54:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0) 00:54:25 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4) 00:54:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0) 00:54:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2) 00:54:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5) 00:54:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3) 00:54:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1) 00:54:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0) 00:54:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10) 00:54:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30) 00:54:25 Building wheels for collected packages: omero-py 00:54:25 Building wheel for omero-py (pyproject.toml): started 00:54:26 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:54:26 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783246 sha256=2f3aee6d90ec788a75c65503ba72cfc643dc03b2de630a6dc3af3937f96b0604 00:54:26 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d 00:54:26 Successfully built omero-py 00:54:26 Installing collected packages: omero-py 00:54:26 Attempting uninstall: omero-py 00:54:26 Found existing installation: omero-py 5.19.5 00:54:27 Uninstalling omero-py-5.19.5: 00:54:27 Successfully uninstalled omero-py-5.19.5 00:54:29 Successfully installed omero-py-5.19.6.dev0 00:54:29 + for x in *.tar.gz 00:54:29 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 00:54:30 Processing ./omero_scripts-5.8.4.dev0.tar.gz 00:54:30 Installing build dependencies: started 00:54:33 Installing build dependencies: finished with status 'done' 00:54:33 Getting requirements to build wheel: started 00:54:33 Getting requirements to build wheel: finished with status 'done' 00:54:33 Preparing metadata (pyproject.toml): started 00:54:33 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:33 Building wheels for collected packages: omero-scripts 00:54:33 Building wheel for omero-scripts (pyproject.toml): started 00:54:33 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:54:33 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116645 sha256=4d91ac380702f2f47a88dbc167e2705dbbb1aaebb753b19b82d32e3c24605191 00:54:33 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 00:54:33 Successfully built omero-scripts 00:54:34 Installing collected packages: omero-scripts 00:54:34 Successfully installed omero-scripts-5.8.4.dev0 00:54:34 + for x in *.tar.gz 00:54:34 + pip install -U omero_web-5.27.3.dev0.tar.gz 00:54:34 Processing ./omero_web-5.27.3.dev0.tar.gz 00:54:35 Installing build dependencies: started 00:54:36 Installing build dependencies: finished with status 'done' 00:54:36 Getting requirements to build wheel: started 00:54:36 Getting requirements to build wheel: finished with status 'done' 00:54:36 Preparing metadata (pyproject.toml): started 00:54:37 Preparing metadata (pyproject.toml): finished with status 'done' 00:54:37 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0) 00:54:37 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0) 00:54:37 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:54:37 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0) 00:54:37 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB) 00:54:37 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0) 00:54:37 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:54:37 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0) 00:54:37 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:54:37 Collecting django-csp (from omero-web==5.27.3.dev0) 00:54:37 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:54:37 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0) 00:54:37 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 00:54:37 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0) 00:54:37 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 00:54:37 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0) 00:54:37 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (11.0.0) 00:54:37 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2) 00:54:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1) 00:54:37 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1) 00:54:38 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 00:54:38 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:54:38 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 00:54:38 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 00:54:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20) 00:54:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4) 00:54:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0) 00:54:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4) 00:54:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2) 00:54:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5) 00:54:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3) 00:54:38 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 00:54:38 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:54:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.4.0) 00:54:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10) 00:54:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30) 00:54:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:54:38 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:54:38 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:54:38 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB) 00:54:38 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 00:54:38 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 00:54:38 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:54:38 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:54:38 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 00:54:38 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:54:38 Building wheels for collected packages: omero-web 00:54:38 Building wheel for omero-web (pyproject.toml): started 00:54:40 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:54:40 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766670 sha256=2664ee56ff86fb3e933950557215b76c08b1aa971c069cd44857ec17b238da1b 00:54:40 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b 00:54:40 Successfully built omero-web 00:54:40 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:54:43 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 00:54:43 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:54:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:54:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:54:43 --2024-10-19 00:54:43-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:54:44 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ... 00:54:44 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 00:54:44 HTTP request sent, awaiting response... 200 OK 00:54:44 Length: 99504 (97K) [text/plain] 00:54:44 Saving to: ‘Figure_To_Pdf.py’ 00:54:44 00:54:44 0K .......... .......... .......... .......... .......... 51% 3.41M 0s 00:54:44 50K .......... .......... .......... .......... ....... 100% 5.63M=0.02s 00:54:44 00:54:44 2024-10-19 00:54:44 (4.22 MB/s) - ‘Figure_To_Pdf.py’ saved [99504/99504] 00:54:44 00:54:44 + chmod 755 Figure_To_Pdf.py 00:54:44 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:54:44 + omero config set omero.db.name OMERO-server 00:54:46 + omero config set omero.db.host pg 00:54:47 + omero config set omero.db.user postgres 00:54:49 + omero config set omero.data.dir /home/omero/omero-server-data 00:54:50 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:54:52 + omero config set omero.db.poolsize 25 00:54:53 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:54:55 + omero config set omero.security.trustStorePassword changeit 00:54:56 + omero config set omero.mail.config true 00:54:58 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:54:59 + omero config set omero.mail.host smtp.dundee.ac.uk 00:55:01 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:55:02 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:55:04 + omero certificates 00:55:06 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:55:06 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:55:06 + '[' false = true ']' 00:55:06 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:55:06 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:55:06 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:55:06 2024-10-19 00:55:06,829 [ omego.db] DEBUG dbcommand => upgrade 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG dbhost => localhost 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG dbname => OMERO-server 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG dbpass => omero 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG dbuser => omero 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG rootpass => omero 00:55:06 2024-10-19 00:55:06,830 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:55:06 2024-10-19 00:55:06,830 [omego.extern] INFO Executing : omero version 00:55:08 OMERO.py version: 00:55:08 OMERO.server version: 00:55:08 5.6.3-513-7e217d8e17-ice36 00:55:08 5.19.6.dev0 00:55:08 2024-10-19 00:55:08,438 [omego.extern] INFO Completed [1.608 s] 00:55:08 2024-10-19 00:55:08,438 [omego.extern] DEBUG Using omero CLI from omero 00:55:08 2024-10-19 00:55:08,439 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:55:08 2024-10-19 00:55:08,439 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:55:08 2024-10-19 00:55:08,439 [omego.extern] INFO Executing : omero config get --show-password 00:55:09 2024-10-19 00:55:09,935 [omego.extern] INFO Completed [1.496 s] 00:55:09 2024-10-19 00:55:09,936 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:55:09 2024-10-19 00:55:09,936 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:55:11 2024-10-19 00:55:11,096 [omego.extern] INFO Completed [1.160 s] 00:55:11 2024-10-19 00:55:11,097 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 00:55:11 2024-10-19 00:55:11,097 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 00:55:11 00:55:11 2024-10-19 00:55:11,097 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:55:11 2024-10-19 00:55:11,097 [omego.extern] INFO Executing : omero config get --show-password 00:55:12 2024-10-19 00:55:12,520 [omego.extern] INFO Completed [1.422 s] 00:55:12 2024-10-19 00:55:12,520 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:55:12 2024-10-19 00:55:12,520 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:55:12 2024-10-19 00:55:12,791 [omego.extern] INFO Completed [0.271 s] 00:55:12 2024-10-19 00:55:12,791 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 00:55:12 2024-10-19 00:55:12,791 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:55:12 2024-10-19 00:55:12,792 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:55:12 2024-10-19 00:55:12,792 [omego.extern] INFO Executing : omero config get --show-password 00:55:14 2024-10-19 00:55:14,288 [omego.extern] INFO Completed [1.497 s] 00:55:14 2024-10-19 00:55:14,289 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:55:14 2024-10-19 00:55:14,289 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:55:14 2024-10-19 00:55:14,475 [omego.extern] INFO Completed [0.186 s] 00:55:14 2024-10-19 00:55:14,475 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:55:14 2024-10-19 00:55:14,475 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:55:14 2024-10-19 00:55:14,477 [ omego.db] INFO Database is already at OMERO5.4__0 00:55:14 + export LANG=en_US.UTF-8 00:55:14 + LANG=en_US.UTF-8 00:55:14 + export LANGUAGE=en_US:en 00:55:14 + LANGUAGE=en_US:en 00:55:14 + export LC_ALL=en_US.UTF-8 00:55:14 + LC_ALL=en_US.UTF-8 00:55:14 + BUILD_ID=DONT_KILL_ME 00:55:14 + omero admin start 00:55:25 No descriptor given. Using etc/grid/default.xml 00:55:37 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:55:37 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:55:37 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:55:37 Waiting on startup. Use CTRL-C to exit 00:55:37 + omero admin waitup 00:55:39 Waiting on startup. Use CTRL-C to exit 00:55:39 + omero admin diagnostics 00:55:41 00:55:41 ================================================================================ 00:55:41 OMERO Diagnostics (admin) 00:55:41 ================================================================================ 00:55:41 00:55:41 Commands: java -version 11.0.24 (/usr/bin/java) 00:55:41 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:55:41 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:55:41 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:55:41 Commands: psql --version 16.4 (/usr/bin/psql) 00:55:41 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:55:41 00:55:41 Component: OMERO.py 5.19.6.dev0 00:55:41 Component: OMERO.server 5.6.3-513-7e217d8e17-ice36 00:55:41 00:55:41 Server: icegridnode running 00:55:41 Server: Blitz-0 active (pid = 12902, enabled) 00:55:41 Server: Indexer-0 activating (enabled) 00:55:41 Server: OMERO.Glacier2 active (pid = 12929, enabled) 00:55:41 Server: OMERO.IceStorm active (pid = 12947, enabled) 00:55:41 Server: Processor-0 active (pid = 12968, enabled) 00:55:41 Server: Tables-0 active (pid = 12955, enabled) 00:55:41 00:55:41 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:55:41 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1 00:55:41 Log files: DropBox.log n/a 00:55:41 Log files: FileServer.log n/a 00:55:41 Log files: Indexer-0.log 598 B 00:55:41 Log files: MonitorServer.log n/a 00:55:41 Log files: Processor-0.log 735 B 00:55:41 Log files: Tables-0.log 961 B 00:55:41 Log files: TestDropBox.log n/a 00:55:41 Log files: master.err 180 B 00:55:41 Log files: master.out 30.1 KB 00:55:41 Log files: Total size 0.06 MB 00:55:41 00:55:41 00:55:41 Environment:OMERO_HOME=(unset) 00:55:41 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:55:41 Environment:OMERO_NODE=(unset) 00:55:41 Environment:OMERO_MASTER=(unset) 00:55:41 Environment:OMERO_USERDIR=(unset) 00:55:41 Environment:OMERO_TMPDIR=(unset) 00:55:41 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:55:41 Environment:PYTHONPATH=(unset) 00:55:41 Environment:ICE_HOME=/opt/ice-3.6.5 00:55:41 Environment:LD_LIBRARY_PATH=(unset) 00:55:41 Environment:DYLD_LIBRARY_PATH=(unset) 00:55:41 00:55:41 OMERO SSL port:4064 00:55:41 OMERO TCP port:4063 00:55:41 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:55:41 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:55:41 00:55:41 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:55:41 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:55:41 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:55:41 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:55:41 00:55:41 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 19 October 2024 e4c4b1f00cd805d5d83d66ca21a453288c3059dd 00:55:41 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 19 October 2024 e4c4b1f00cd805d5d83d66ca21a453288c3059dd 00:55:41 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 19 October 2024 e4c4b1f00cd805d5d83d66ca21a453288c3059dd 00:55:41 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 19 October 2024 d5cb548e2d7043b7e637f43daf4aa92c10b598ba 00:55:41 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 00:55:41 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 00:55:41 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT 00:55:41 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 00:55:41 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 00:55:41 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 00:55:41 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 00:55:41 + deactivate 00:55:41 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:55:41 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:55:41 + export PATH 00:55:41 + unset _OLD_VIRTUAL_PATH 00:55:41 + '[' -n '' ']' 00:55:41 + '[' -n /bin/bash -o -n '' ']' 00:55:41 + hash -r 00:55:41 + '[' -n '' ']' 00:55:41 + unset VIRTUAL_ENV 00:55:41 + '[' '!' '' = nondestructive ']' 00:55:41 + unset -f deactivate 00:55:41 Finished: SUCCESS