00:48:03 Started by upstream project "Trigger" build number 21 00:48:03 originally caused by: 00:48:03 Started by timer 00:48:03 Running as SYSTEM 00:48:03 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:48:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6707890398651017386.sh 00:48:03 + source /home/settings.env 00:48:03 ++ OMERO_DB_HOST=pg 00:48:03 ++ OMERO_DB_USER=postgres 00:48:03 ++ OMERO_DB_PASS= 00:48:03 ++ OMERO_ROOT_PASS=omero 00:48:03 ++ OMERO_DATA_DIR=/OMERO 00:48:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:48:03 + OMERO_DB_NAME=OMERO-server 00:48:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:48:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:03 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:48:03 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:48:03 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:48:03 ++ deactivate nondestructive 00:48:03 ++ '[' -n '' ']' 00:48:03 ++ '[' -n '' ']' 00:48:03 ++ '[' -n /bin/bash -o -n '' ']' 00:48:03 ++ hash -r 00:48:03 ++ '[' -n '' ']' 00:48:03 ++ unset VIRTUAL_ENV 00:48:03 ++ '[' '!' nondestructive = nondestructive ']' 00:48:03 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:48:03 ++ export VIRTUAL_ENV 00:48:03 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:03 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:03 ++ export PATH 00:48:03 ++ '[' -n '' ']' 00:48:03 ++ '[' -z '' ']' 00:48:03 ++ _OLD_VIRTUAL_PS1= 00:48:03 ++ PS1='(.venv3) ' 00:48:03 ++ export PS1 00:48:03 ++ '[' -n /bin/bash -o -n '' ']' 00:48:03 ++ hash -r 00:48:03 + omero admin stop 00:48:14 Waiting on shutdown. Use CTRL-C to exit 00:48:14 .+ sleep 5 00:48:30 + deactivate 00:48:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:48:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:30 + export PATH 00:48:30 + unset _OLD_VIRTUAL_PATH 00:48:30 + '[' -n '' ']' 00:48:30 + '[' -n /bin/bash -o -n '' ']' 00:48:30 + hash -r 00:48:30 + '[' -n '' ']' 00:48:30 + unset VIRTUAL_ENV 00:48:30 + '[' '!' '' = nondestructive ']' 00:48:30 + unset -f deactivate 00:48:30 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:48:36 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:48:41 + '[' false = true ']' 00:48:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:48:41 Skipping PURGE_DATA:CleanDbAndRepo 00:48:41 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:48:46 Copied 1 artifact from "OMERO-build" build number 18 00:48:46 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 18 00:48:46 Copied 2 artifacts from "OMERO-build-build" build number 18 00:48:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15464464364015661347.sh 00:48:46 + source /home/settings.env 00:48:46 ++ OMERO_DB_HOST=pg 00:48:46 ++ OMERO_DB_USER=postgres 00:48:46 ++ OMERO_DB_PASS= 00:48:46 ++ OMERO_ROOT_PASS=omero 00:48:46 ++ OMERO_DATA_DIR=/OMERO 00:48:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:48:46 + OMERO_DB_NAME=OMERO-server 00:48:46 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:48:46 + mkdir -p /home/omero/omero-server-data 00:48:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:48:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:48:46 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:46 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:48:46 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:46 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:48:46 ++ ls OMERO.server-5.6.3-437-9cd7d5c9a7-ice36.zip 00:48:46 + ZIP=OMERO.server-5.6.3-437-9cd7d5c9a7-ice36.zip 00:48:46 + '[' '!' -z '' ']' 00:48:46 + DIST=OMERO.server-5.6.3-437-9cd7d5c9a7-ice36 00:48:46 + unzip OMERO.server-5.6.3-437-9cd7d5c9a7-ice36.zip 00:48:46 Archive: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36.zip 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/blitz/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/grid/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/profiles/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/error/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/grid/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/luts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/luts/janelia/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/luts/ncsa_paledit/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/luts/wcif/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/analysis_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/annotation_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/export_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/figure_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/import_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/scripts/omero/util_scripts/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/misc/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__1/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__10/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__11/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__2/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__3/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__4/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__5/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__6/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__7/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__8/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__9/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__4/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__5/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__6/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__7/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.1__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.2__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.2__0/t/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.3__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.4__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.0__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.1__1/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.2__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__1/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__2/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__3/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/ 00:48:46 creating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/var/ 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/LICENSE.txt 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/backup.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/blitz/mail-senders.example 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/blitz/mail-server.example 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/build.properties 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/env.bat 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/env.sh 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/hibernate.properties 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/ice.config 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/logback-cli.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/logback-indexing-cli.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/logback-indexing.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/logback.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/mime.types 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/node1.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/node2.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/omero.properties 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/profiles/psql 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/rollover.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/Windows.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/error/maintainance.html 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/grid/README 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/grid/default.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/grid/templates.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/grid/windefault.xml 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/ice.config 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/internal.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/master.cfg 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/templates/robot.template 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/etc/testdropbox.config 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/history.rst 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/OMEZarrReader.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/activation.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aggdesigner-algorithm.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aircompressor.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/annotations.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/antlr.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aopalliance.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/apache-client.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/arns.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/auth.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/avatica-core.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/avatica-metrics.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aws-core.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aws-query-protocol.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/aws-xml-protocol.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/base.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-all.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-anim.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-awt-util.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-bridge.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-codec.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-constants.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-css.jar 00:48:46 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/client/batik-dom.jar 00:48:46 inflating: 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OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-jdbc.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-jms.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-ldap-core.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-messaging.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-orm.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-security-core.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-security-ldap.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/spring-tx.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/sqlite-jdbc.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/subethasmtp.jar 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/lib/server/third-party-jackson-core.jar 00:48:49 inflating: 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inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/antlr.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/apache-v1.1.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/apache-v2.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/asm.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/bouncy_castle_license.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/bsd.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/cddl-v1.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/cpl-v10.html 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/crystalclear.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/django.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/dom4j.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/epl-v1.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/fbsd.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/freemarker.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/gpl-v2.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/gpl.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/gtest.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/iconsweets_license.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/jamon.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/jmock.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/jquery.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/jtidy.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/lgpl-3.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/lgpl-v2.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/lgpl-v2.1.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/lgpl-v3.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/lgpl.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/matplotlib.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/mit.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/mpl-v1_0.htm 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/npl-1_1.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/path.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/pil.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/postgresql.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/psf-v2.0.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/psf-v2.5.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/scons.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/slf4j.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/tablelayout.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/which.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/zlib-libpng.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/share/licenses/zpl-v2.1.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/README.txt 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/misc/Makefile 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/misc/current.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/misc/enums.py 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__4/OMERO3__1.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/schema.sql 00:48:49 inflating: OMERO.server-5.6.3-437-9cd7d5c9a7-ice36/sql/psql/OMERO5.4__0/views.sql 00:48:49 + rm -f OMERO.server-5.6.3-437-9cd7d5c9a7-ice36.zip 00:48:49 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-437-9cd7d5c9a7-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:48:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:48:49 ++ deactivate nondestructive 00:48:49 ++ '[' -n '' ']' 00:48:49 ++ '[' -n '' ']' 00:48:49 ++ '[' -n /bin/bash -o -n '' ']' 00:48:49 ++ hash -r 00:48:49 ++ '[' -n '' ']' 00:48:49 ++ unset VIRTUAL_ENV 00:48:49 ++ '[' '!' nondestructive = nondestructive ']' 00:48:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:48:49 ++ export VIRTUAL_ENV 00:48:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:48:49 ++ export PATH 00:48:49 ++ '[' -n '' ']' 00:48:49 ++ '[' -z '' ']' 00:48:49 ++ _OLD_VIRTUAL_PS1= 00:48:49 ++ PS1='(.venv3) ' 00:48:49 ++ export PS1 00:48:49 ++ '[' -n /bin/bash -o -n '' ']' 00:48:49 ++ hash -r 00:48:49 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:48:49 Collecting zeroc-ice==3.6.5 00:48:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:48:52 Installing collected packages: zeroc-ice 00:48:53 Successfully installed zeroc-ice-3.6.5 00:48:53 + pip install -U pip future 00:48:53 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:48:54 Collecting pip 00:48:54 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 00:48:54 Collecting future 00:48:54 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:48:54 Installing collected packages: pip, future 00:48:54 Attempting uninstall: pip 00:48:54 Found existing installation: pip 21.2.3 00:48:54 Uninstalling pip-21.2.3: 00:48:54 Successfully uninstalled pip-21.2.3 00:48:56 Successfully installed future-1.0.0 pip-24.0 00:48:56 + pip install markdown 00:48:56 Collecting markdown 00:48:56 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 00:48:57 Collecting importlib-metadata>=4.4 (from markdown) 00:48:57 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 00:48:57 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 00:48:57 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 00:48:57 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 00:48:57 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 00:48:57 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 00:48:57 Installing collected packages: zipp, importlib-metadata, markdown 00:48:57 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 00:48:57 + pip install reportlab 00:48:58 Collecting reportlab 00:48:58 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB) 00:48:58 Collecting pillow>=9.0.0 (from reportlab) 00:48:58 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB) 00:48:58 Collecting chardet (from reportlab) 00:48:58 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:48:58 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB) 00:48:59 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:48:59 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:48:59 Installing collected packages: pillow, chardet, reportlab 00:49:00 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0 00:49:01 + pip install omego 00:49:01 Collecting omego 00:49:01 Using cached omego-0.7.0-py3-none-any.whl 00:49:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:49:02 Collecting yaclifw>=0.1.1 (from omego) 00:49:02 Using cached yaclifw-0.2.0-py3-none-any.whl 00:49:02 Collecting six (from yaclifw>=0.1.1->omego) 00:49:02 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:49:02 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:49:02 Installing collected packages: six, yaclifw, omego 00:49:02 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 00:49:02 + pip install tables 00:49:03 Collecting tables 00:49:03 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:49:03 Collecting numpy>=1.19.0 (from tables) 00:49:03 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:49:03 Collecting numexpr>=2.6.2 (from tables) 00:49:03 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 00:49:04 Collecting packaging (from tables) 00:49:04 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 00:49:04 Collecting py-cpuinfo (from tables) 00:49:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:49:04 Collecting blosc2>=2.3.0 (from tables) 00:49:04 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:49:04 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:49:04 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 00:49:04 Collecting msgpack (from blosc2>=2.3.0->tables) 00:49:04 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 00:49:04 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:49:04 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:49:04 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB) 00:49:04 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:49:04 Using cached packaging-24.0-py3-none-any.whl (53 kB) 00:49:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:49:04 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 00:49:04 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 00:49:05 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:49:09 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 00:49:09 + pip install jinja2 00:49:10 Collecting jinja2 00:49:10 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 00:49:10 Collecting MarkupSafe>=2.0 (from jinja2) 00:49:10 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:49:10 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 00:49:10 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:49:10 Installing collected packages: MarkupSafe, jinja2 00:49:10 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 00:49:11 + pip install omero-py 00:49:11 Collecting omero-py 00:49:11 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB) 00:49:11 Collecting urllib3<2 (from omero-py) 00:49:11 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 00:49:11 Collecting appdirs (from omero-py) 00:49:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:49:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:49:11 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 00:49:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0) 00:49:12 Collecting PyYAML (from omero-py) 00:49:12 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:49:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:49:12 Collecting requests (from omero-py) 00:49:12 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 00:49:12 Collecting portalocker (from omero-py) 00:49:12 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 00:49:12 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:49:12 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:49:12 Collecting idna<4,>=2.5 (from requests->omero-py) 00:49:12 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 00:49:12 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:49:12 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 00:49:12 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB) 00:49:12 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 00:49:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:49:12 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 00:49:12 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:49:12 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 00:49:12 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 00:49:12 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:49:12 Using cached idna-3.6-py3-none-any.whl (61 kB) 00:49:13 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 00:49:15 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 00:49:15 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:49:16 Collecting omero-metadata 00:49:16 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-go4p69xi/omero-metadata_a28b1590a8fe4f7295bf88d39990248e 00:49:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-go4p69xi/omero-metadata_a28b1590a8fe4f7295bf88d39990248e 00:49:17 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 6ff856ef1d77563d40b7563bd2cce4fdbc675b8d 00:49:17 Installing build dependencies: started 00:49:19 Installing build dependencies: finished with status 'done' 00:49:19 Getting requirements to build wheel: started 00:49:19 Getting requirements to build wheel: finished with status 'done' 00:49:19 Installing backend dependencies: started 00:49:20 Installing backend dependencies: finished with status 'done' 00:49:20 Preparing metadata (pyproject.toml): started 00:49:20 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.1) 00:49:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 00:49:20 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 00:49:21 Collecting pandas (from omero-metadata) 00:49:21 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 00:49:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 00:49:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:49:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:49:21 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:49:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0) 00:49:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:49:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 00:49:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 00:49:21 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 00:49:21 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:49:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:49:21 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:49:21 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 00:49:21 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:49:21 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:49:21 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 00:49:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 00:49:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6) 00:49:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 00:49:21 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) 00:49:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:49:21 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 00:49:21 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 00:49:21 Building wheels for collected packages: omero-metadata 00:49:21 Building wheel for omero-metadata (pyproject.toml): started 00:49:24 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:49:24 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=63d8245686a0067b6279dc70edd5826498c33ee4406f3a3263bd4c3bd47f32aa 00:49:24 Stored in directory: /tmp/pip-ephem-wheel-cache-q_py98wu/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:49:24 Successfully built omero-metadata 00:49:24 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:49:30 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 00:49:31 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:49:31 Collecting omero-cli-render 00:49:31 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-i98bm6rm/omero-cli-render_ba64a9685f8e4e1db3a328303d34a7b3 00:49:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-i98bm6rm/omero-cli-render_ba64a9685f8e4e1db3a328303d34a7b3 00:49:32 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:33 Switched to a new branch 'merge_ci' 00:49:33 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:33 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit e93c053e3f7f2f051edf0d4c52e171ece7053f6b 00:49:33 Installing build dependencies: started 00:49:36 Installing build dependencies: finished with status 'done' 00:49:36 Getting requirements to build wheel: started 00:49:36 Getting requirements to build wheel: finished with status 'done' 00:49:36 Installing backend dependencies: started 00:49:37 Installing backend dependencies: finished with status 'done' 00:49:37 Preparing metadata (pyproject.toml): started 00:49:38 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 00:49:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.1) 00:49:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 00:49:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 00:49:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:49:38 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:49:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0) 00:49:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:49:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 00:49:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 00:49:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 00:49:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6) 00:49:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 00:49:38 Building wheels for collected packages: omero-cli-render 00:49:38 Building wheel for omero-cli-render (pyproject.toml): started 00:49:38 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:49:38 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=df7dc16fe127f1943fdee56be0ef1458c70bc54b59be0458124a6d47d531219e 00:49:38 Stored in directory: /tmp/pip-ephem-wheel-cache-quqvf270/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:49:38 Successfully built omero-cli-render 00:49:38 Installing collected packages: omero-cli-render 00:49:38 Successfully installed omero-cli-render-0.8.1.dev0 00:49:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:49:39 Collecting omero-cli-duplicate 00:49:39 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-zt23sdyq/omero-cli-duplicate_95ad5f5d03e648a8a8289b2ae4cbd623 00:49:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-zt23sdyq/omero-cli-duplicate_95ad5f5d03e648a8a8289b2ae4cbd623 00:49:40 Running command git checkout -b merge_ci --track origin/merge_ci 00:49:41 Switched to a new branch 'merge_ci' 00:49:41 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:49:41 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 2140196804bc2c821b6c6dfef758aee0f94c6d46 00:49:41 Installing build dependencies: started 00:49:43 Installing build dependencies: finished with status 'done' 00:49:43 Getting requirements to build wheel: started 00:49:44 Getting requirements to build wheel: finished with status 'done' 00:49:44 Installing backend dependencies: started 00:49:45 Installing backend dependencies: finished with status 'done' 00:49:45 Preparing metadata (pyproject.toml): started 00:49:45 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:45 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.1) 00:49:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 00:49:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:49:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:49:45 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:49:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0) 00:49:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 00:49:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:49:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 00:49:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 00:49:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 00:49:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6) 00:49:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 00:49:45 Building wheels for collected packages: omero-cli-duplicate 00:49:45 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:49:46 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:49:46 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=2da7eae4a1bd9675e63f9af2e23f0f21787bdc472abbf82a6a8496b36f29954d 00:49:46 Stored in directory: /tmp/pip-ephem-wheel-cache-znplbrpi/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:49:46 Successfully built omero-cli-duplicate 00:49:46 Installing collected packages: omero-cli-duplicate 00:49:46 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:49:46 + pip install omero-certificates 00:49:47 Collecting omero-certificates 00:49:47 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:49:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.1) 00:49:47 Collecting distro==1.8.0 (from omero-certificates) 00:49:47 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:49:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 00:49:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:49:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:49:47 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:49:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0) 00:49:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 00:49:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:49:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 00:49:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 00:49:48 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 00:49:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6) 00:49:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 00:49:48 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:49:48 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:49:48 Installing collected packages: distro, omero-certificates 00:49:48 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:49:48 + for x in *.tar.gz 00:49:48 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz 00:49:49 Processing ./omero-dropbox-5.6.3.dev0.tar.gz 00:49:49 Installing build dependencies: started 00:49:52 Installing build dependencies: finished with status 'done' 00:49:52 Getting requirements to build wheel: started 00:49:53 Getting requirements to build wheel: finished with status 'done' 00:49:53 Installing backend dependencies: started 00:49:54 Installing backend dependencies: finished with status 'done' 00:49:54 Preparing metadata (pyproject.toml): started 00:49:55 Preparing metadata (pyproject.toml): finished with status 'done' 00:49:55 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.1) 00:49:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 00:49:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 00:49:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 00:49:55 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 00:49:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0) 00:49:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 00:49:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 00:49:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 00:49:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 00:49:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 00:49:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6) 00:49:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 00:49:55 Building wheels for collected packages: omero-dropbox 00:49:55 Building wheel for omero-dropbox (pyproject.toml): started 00:49:55 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:49:55 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=00077f79a302a5b20b7571f64be6031c7b1724da151e50bd0fc9ea7a23b59957 00:49:55 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1 00:49:55 Successfully built omero-dropbox 00:49:56 Installing collected packages: omero-dropbox 00:49:56 Successfully installed omero-dropbox-5.6.3.dev0 00:49:56 + for x in *.tar.gz 00:49:56 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:49:57 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:49:57 Installing build dependencies: started 00:50:00 Installing build dependencies: finished with status 'done' 00:50:00 Getting requirements to build wheel: started 00:50:01 Getting requirements to build wheel: finished with status 'done' 00:50:01 Installing backend dependencies: started 00:50:02 Installing backend dependencies: finished with status 'done' 00:50:02 Preparing metadata (pyproject.toml): started 00:50:03 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:03 Building wheels for collected packages: omero_marshal 00:50:03 Building wheel for omero_marshal (pyproject.toml): started 00:50:03 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:50:03 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=2af483cdb42e84566d5e98b73619455438162307c4d4a221a4014d5bd4adb147 00:50:03 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:50:03 Successfully built omero_marshal 00:50:03 Installing collected packages: omero_marshal 00:50:03 Successfully installed omero_marshal-0.9.1.dev0 00:50:04 + for x in *.tar.gz 00:50:04 + pip install -U omero-py-5.19.2.dev0.tar.gz 00:50:04 Processing ./omero-py-5.19.2.dev0.tar.gz 00:50:05 Installing build dependencies: started 00:50:07 Installing build dependencies: finished with status 'done' 00:50:07 Getting requirements to build wheel: started 00:50:08 Getting requirements to build wheel: finished with status 'done' 00:50:08 Installing backend dependencies: started 00:50:11 Installing backend dependencies: finished with status 'done' 00:50:11 Preparing metadata (pyproject.toml): started 00:50:11 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:11 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18) 00:50:11 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4) 00:50:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0) 00:50:11 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4) 00:50:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0) 00:50:11 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1) 00:50:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5) 00:50:11 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0) 00:50:11 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2) 00:50:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2) 00:50:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6) 00:50:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2) 00:50:11 Building wheels for collected packages: omero-py 00:50:11 Building wheel for omero-py (pyproject.toml): started 00:50:12 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:50:12 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2781958 sha256=8bb5d3bb0be4fbf2b2e3e88bfe852be04a2889cfad9cf7c2e7125fb358c05dee 00:50:12 Stored in directory: /home/omero/.cache/pip/wheels/9c/89/be/2493ce5a19b07550997c567708af9d7056cfee1f4f39ac699d 00:50:13 Successfully built omero-py 00:50:13 Installing collected packages: omero-py 00:50:13 Attempting uninstall: omero-py 00:50:13 Found existing installation: omero-py 5.19.1 00:50:13 Uninstalling omero-py-5.19.1: 00:50:13 Successfully uninstalled omero-py-5.19.1 00:50:17 Successfully installed omero-py-5.19.2.dev0 00:50:17 + for x in *.tar.gz 00:50:17 + pip install -U omero-scripts-5.8.1.dev0.tar.gz 00:50:18 Processing ./omero-scripts-5.8.1.dev0.tar.gz 00:50:18 Installing build dependencies: started 00:50:21 Installing build dependencies: finished with status 'done' 00:50:21 Getting requirements to build wheel: started 00:50:22 Getting requirements to build wheel: finished with status 'done' 00:50:22 Installing backend dependencies: started 00:50:24 Installing backend dependencies: finished with status 'done' 00:50:24 Preparing metadata (pyproject.toml): started 00:50:24 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:24 Building wheels for collected packages: omero-scripts 00:50:24 Building wheel for omero-scripts (pyproject.toml): started 00:50:24 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:50:24 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=23bd641505f54cd4451e34d7643b58bf09af910fca0d3db878597d47ed536bab 00:50:24 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf 00:50:24 Successfully built omero-scripts 00:50:25 Installing collected packages: omero-scripts 00:50:25 Successfully installed omero-scripts-5.8.1.dev0 00:50:26 + for x in *.tar.gz 00:50:26 + pip install -U omero-web-5.25.1.dev0.tar.gz 00:50:27 Processing ./omero-web-5.25.1.dev0.tar.gz 00:50:28 Installing build dependencies: started 00:50:31 Installing build dependencies: finished with status 'done' 00:50:31 Getting requirements to build wheel: started 00:50:31 Getting requirements to build wheel: finished with status 'done' 00:50:31 Installing backend dependencies: started 00:50:33 Installing backend dependencies: finished with status 'done' 00:50:33 Preparing metadata (pyproject.toml): started 00:50:34 Preparing metadata (pyproject.toml): finished with status 'done' 00:50:34 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0) 00:50:34 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 00:50:34 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:50:34 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 00:50:34 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 00:50:34 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 00:50:34 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 00:50:34 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 00:50:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:50:35 Collecting django-csp (from omero-web==5.25.1.dev0) 00:50:35 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:50:35 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 00:50:35 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 00:50:35 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 00:50:35 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) 00:50:35 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 00:50:35 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0) 00:50:35 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 00:50:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 00:50:35 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 00:50:35 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:50:35 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:50:35 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:50:35 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) 00:50:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 00:50:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 00:50:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 00:50:35 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 00:50:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 00:50:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 00:50:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 00:50:35 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 00:50:35 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 00:50:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 00:50:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) 00:50:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 00:50:35 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:50:35 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 00:50:35 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:50:35 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 00:50:35 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) 00:50:35 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 00:50:35 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:50:35 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:50:36 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) 00:50:36 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 00:50:36 Building wheels for collected packages: omero-web 00:50:36 Building wheel for omero-web (pyproject.toml): started 00:50:38 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:50:38 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=54a8f2590ae395a42405a1bd4494964ef0457622d7f0ac13e0378de55dbf1a21 00:50:38 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a 00:50:38 Successfully built omero-web 00:50:38 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 00:50:42 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 00:50:43 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:50:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:50:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:50:43 --2024-03-31 00:50:43-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:50:44 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ... 00:50:44 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 00:50:44 HTTP request sent, awaiting response... 200 OK 00:50:44 Length: 94614 (92K) [text/plain] 00:50:44 Saving to: ‘Figure_To_Pdf.py’ 00:50:44 00:50:44 0K .......... .......... .......... .......... .......... 54% 3.36M 0s 00:50:44 50K .......... .......... .......... .......... .. 100% 11.7M=0.02s 00:50:44 00:50:44 2024-03-31 00:50:44 (4.99 MB/s) - ‘Figure_To_Pdf.py’ saved [94614/94614] 00:50:44 00:50:44 + chmod 755 Figure_To_Pdf.py 00:50:44 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:50:44 + omero config set omero.db.name OMERO-server 00:50:48 + omero config set omero.db.host pg 00:50:51 + omero config set omero.db.user postgres 00:50:53 + omero config set omero.data.dir /home/omero/omero-server-data 00:50:56 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:51:00 + omero config set omero.db.poolsize 25 00:51:04 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:51:07 + omero config set omero.security.trustStorePassword changeit 00:51:10 + omero config set omero.mail.config true 00:51:12 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:51:15 + omero config set omero.mail.host smtp.dundee.ac.uk 00:51:18 + omero certificates 00:51:20 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:51:21 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:51:21 + '[' false = true ']' 00:51:21 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:51:21 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:51:21 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG dbcommand => upgrade 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG dbhost => localhost 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG dbname => OMERO-server 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG dbpass => omero 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG dbuser => omero 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG rootpass => omero 00:51:22 2024-03-31 00:51:22,176 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:51:22 2024-03-31 00:51:22,176 [omego.extern] INFO Executing : omero version 00:51:24 OMERO.py version: 00:51:25 OMERO.server version: 00:51:25 5.6.3-437-9cd7d5c9a7-ice36 00:51:25 5.19.2.dev0 00:51:25 2024-03-31 00:51:25,858 [omego.extern] INFO Completed [3.681 s] 00:51:25 2024-03-31 00:51:25,860 [omego.extern] DEBUG Using omero CLI from omero 00:51:25 2024-03-31 00:51:25,861 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:51:25 2024-03-31 00:51:25,861 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:25 2024-03-31 00:51:25,861 [omego.extern] INFO Executing : omero config get --show-password 00:51:29 2024-03-31 00:51:29,021 [omego.extern] INFO Completed [3.160 s] 00:51:29 2024-03-31 00:51:29,022 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:29 2024-03-31 00:51:29,022 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:51:29 2024-03-31 00:51:29,183 [omego.extern] INFO Completed [0.160 s] 00:51:29 2024-03-31 00:51:29,183 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 00:51:29 2024-03-31 00:51:29,184 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 00:51:29 00:51:29 2024-03-31 00:51:29,184 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:29 2024-03-31 00:51:29,184 [omego.extern] INFO Executing : omero config get --show-password 00:51:33 2024-03-31 00:51:32,997 [omego.extern] INFO Completed [3.812 s] 00:51:33 2024-03-31 00:51:32,998 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:33 2024-03-31 00:51:32,998 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:51:33 2024-03-31 00:51:33,156 [omego.extern] INFO Completed [0.157 s] 00:51:33 2024-03-31 00:51:33,157 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.8") at port "5432".\n' 00:51:33 2024-03-31 00:51:33,157 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:51:33 2024-03-31 00:51:33,157 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:51:33 2024-03-31 00:51:33,158 [omego.extern] INFO Executing : omero config get --show-password 00:51:36 2024-03-31 00:51:36,620 [omego.extern] INFO Completed [3.462 s] 00:51:36 2024-03-31 00:51:36,621 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:51:36 2024-03-31 00:51:36,621 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:51:36 2024-03-31 00:51:36,693 [omego.extern] INFO Completed [0.072 s] 00:51:36 2024-03-31 00:51:36,693 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:51:36 2024-03-31 00:51:36,693 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:51:36 2024-03-31 00:51:36,697 [ omego.db] INFO Database is already at OMERO5.4__0 00:51:36 + export LANG=en_US.UTF-8 00:51:36 + LANG=en_US.UTF-8 00:51:36 + export LANGUAGE=en_US:en 00:51:36 + LANGUAGE=en_US:en 00:51:36 + export LC_ALL=en_US.UTF-8 00:51:36 + LC_ALL=en_US.UTF-8 00:51:36 + BUILD_ID=DONT_KILL_ME 00:51:36 + omero admin start 00:52:08 No descriptor given. Using etc/grid/default.xml 00:52:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:52:44 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:52:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:52:44 Waiting on startup. Use CTRL-C to exit 00:52:44 + omero admin waitup 00:52:46 Waiting on startup. Use CTRL-C to exit 00:52:47 + omero admin diagnostics 00:52:49 00:52:49 ================================================================================ 00:52:49 OMERO Diagnostics (admin) 00:52:49 ================================================================================ 00:52:49 00:52:49 Commands: java -version 11.0.22 (/usr/bin/java) 00:52:50 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:52:50 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:52:50 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:52:50 Commands: psql --version 16.2 (/usr/bin/psql) 00:52:50 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:52:50 00:52:50 Component: OMERO.py 5.19.2.dev0 00:52:50 Component: OMERO.server 5.6.3-437-9cd7d5c9a7-ice36 00:52:50 00:52:50 Server: icegridnode running 00:52:50 Server: Blitz-0 active (pid = 13279, enabled) 00:52:50 Server: DropBox active (pid = 13304, enabled) 00:52:50 Server: FileServer active (pid = 13309, enabled) 00:52:50 Server: Indexer-0 active (pid = 13308, enabled) 00:52:50 Server: MonitorServer active (pid = 13314, enabled) 00:52:50 Server: OMERO.Glacier2 active (pid = 13355, enabled) 00:52:50 Server: OMERO.IceStorm active (pid = 13330, enabled) 00:52:50 Server: PixelData-0 active (pid = 13325, enabled) 00:52:50 Server: Processor-0 activating (enabled) 00:52:50 Server: Tables-0 activating (enabled) 00:52:50 Server: TestDropBox inactive (enabled) 00:52:50 00:52:50 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:52:50 Log files: Blitz-0.log 25.3 KB errors=0 warnings=1 00:52:50 Log files: DropBox.log 1.2 KB 00:52:50 Log files: FileServer.log 114 B 00:52:50 Log files: Indexer-0.log 2.6 KB 00:52:50 Log files: MonitorServer.log 1.1 KB 00:52:50 Log files: PixelData-0.log 3.4 KB 00:52:50 Log files: Processor-0.log 592 B 00:52:50 Log files: Tables-0.log 841 B 00:52:50 Log files: TestDropBox.log n/a 00:52:50 Log files: master.err 2.1 KB 00:52:50 Log files: master.out 41.5 KB 00:52:50 Log files: Total size 0.08 MB 00:52:50 00:52:50 00:52:50 Environment:OMERO_HOME=(unset) 00:52:50 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:50 Environment:OMERO_NODE=(unset) 00:52:50 Environment:OMERO_MASTER=(unset) 00:52:50 Environment:OMERO_USERDIR=(unset) 00:52:50 Environment:OMERO_TMPDIR=(unset) 00:52:50 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:50 Environment:PYTHONPATH=(unset) 00:52:50 Environment:ICE_HOME=/opt/ice-3.6.5 00:52:50 Environment:LD_LIBRARY_PATH=(unset) 00:52:50 Environment:DYLD_LIBRARY_PATH=(unset) 00:52:50 00:52:50 OMERO SSL port:4064 00:52:50 OMERO TCP port:4063 00:52:50 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:52:50 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:52:50 00:52:50 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:50 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:50 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:50 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:52:50 00:52:50 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 31 March 2024 39367ccd8abef665b22664774e49be4139c336cc 00:52:50 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 31 March 2024 39367ccd8abef665b22664774e49be4139c336cc 00:52:50 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 31 March 2024 39367ccd8abef665b22664774e49be4139c336cc 00:52:50 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 31 March 2024 fd26fa8892462e46f23ca93c1c5d820bdda5fd80 00:52:50 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 00:52:50 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 00:52:50 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 00:52:50 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 00:52:50 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 00:52:50 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 00:52:50 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 00:52:51 + deactivate 00:52:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:52:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:51 + export PATH 00:52:51 + unset _OLD_VIRTUAL_PATH 00:52:51 + '[' -n '' ']' 00:52:51 + '[' -n /bin/bash -o -n '' ']' 00:52:51 + hash -r 00:52:51 + '[' -n '' ']' 00:52:51 + unset VIRTUAL_ENV 00:52:51 + '[' '!' '' = nondestructive ']' 00:52:51 + unset -f deactivate 00:52:51 Finished: SUCCESS