13:18:21 Started by upstream project "Trigger" build number 36 13:18:21 originally caused by: 13:18:21 Started by user devspace 13:18:21 Running as SYSTEM 13:18:22 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 13:18:22 [OMERO-server] $ /bin/bash -xe /tmp/jenkins863007112580199628.sh 13:18:22 + source /home/settings.env 13:18:22 ++ OMERO_DB_HOST=pg 13:18:22 ++ OMERO_DB_USER=postgres 13:18:22 ++ OMERO_DB_PASS= 13:18:22 ++ OMERO_ROOT_PASS=omero 13:18:22 ++ OMERO_DATA_DIR=/OMERO 13:18:22 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:18:22 + OMERO_DB_NAME=OMERO-server 13:18:22 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:18:22 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:18:22 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:18:22 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:18:22 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 13:18:22 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:18:22 ++ deactivate nondestructive 13:18:22 ++ '[' -n '' ']' 13:18:22 ++ '[' -n '' ']' 13:18:22 ++ hash -r 13:18:22 ++ '[' -n '' ']' 13:18:22 ++ unset VIRTUAL_ENV 13:18:22 ++ unset VIRTUAL_ENV_PROMPT 13:18:22 ++ '[' '!' nondestructive = nondestructive ']' 13:18:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:18:22 ++ export VIRTUAL_ENV 13:18:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:18:22 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:18:22 ++ export PATH 13:18:22 ++ '[' -n '' ']' 13:18:22 ++ '[' -z '' ']' 13:18:22 ++ _OLD_VIRTUAL_PS1= 13:18:22 ++ PS1='(.venv3) ' 13:18:22 ++ export PS1 13:18:22 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:18:22 ++ export VIRTUAL_ENV_PROMPT 13:18:22 ++ hash -r 13:18:22 + omero admin stop 13:18:58 Server not running 13:18:58 + echo not running 13:18:58 not running 13:18:58 + sleep 5 13:19:03 + deactivate 13:19:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:19:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:19:03 + export PATH 13:19:03 + unset _OLD_VIRTUAL_PATH 13:19:03 + '[' -n '' ']' 13:19:03 + hash -r 13:19:03 + '[' -n '' ']' 13:19:03 + unset VIRTUAL_ENV 13:19:03 + unset VIRTUAL_ENV_PROMPT 13:19:03 + '[' '!' '' = nondestructive ']' 13:19:03 + unset -f deactivate 13:19:03 + rm -rf /home/omero/workspace/OMERO-server/.venv3 13:21:36 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 13:21:56 + '[' false = true ']' 13:21:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 13:21:56 Skipping PURGE_DATA:CleanDbAndRepo 13:21:56 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 13:22:02 Copied 1 artifact from "OMERO-build" build number 26 13:22:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 22 13:22:02 Copied 2 artifacts from "OMERO-build-build" build number 34 13:22:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7287550926543271700.sh 13:22:02 + source /home/settings.env 13:22:02 ++ OMERO_DB_HOST=pg 13:22:02 ++ OMERO_DB_USER=postgres 13:22:02 ++ OMERO_DB_PASS= 13:22:02 ++ OMERO_ROOT_PASS=omero 13:22:02 ++ OMERO_DATA_DIR=/OMERO 13:22:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:22:02 + OMERO_DB_NAME=OMERO-server 13:22:02 + OMERO_DATA_DIR=/home/omero/omero-server-data 13:22:02 + mkdir -p /home/omero/omero-server-data 13:22:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 13:22:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:22:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:22:02 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:22:02 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 13:22:02 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:22:02 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 13:22:02 ++ ls OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip 13:22:02 + ZIP=OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip 13:22:02 + '[' '!' -z '' ']' 13:22:02 + DIST=OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26 13:22:02 + unzip OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip 13:22:02 Archive: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/grid/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/profiles/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/error/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/janelia/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/matplotlib/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/ncsa_paledit/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/seaborn/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/wcif/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/analysis_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/annotation_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/export_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/figure_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/import_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/util_scripts/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/server/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__1/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__10/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__2/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__5/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__6/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__7/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__8/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__9/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__4/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__5/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__6/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__7/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.1__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__1/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__2/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__3/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/var/ 13:22:03 creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/var/tmp/ 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/LICENSE.txt 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/backup.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/mail-senders.example 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/mail-server.example 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/build.properties 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/env.bat 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/env.sh 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/hibernate.properties 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/ice.config 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-cli.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-indexing-cli.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-indexing.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/mime.types 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/node1.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/node2.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/omero.properties 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/profiles/psql 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/rollover.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/Windows.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/error/maintainance.html 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/README 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/default.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/templates.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/windefault.xml 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/ice.config 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/internal.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/master.cfg 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/robot.template 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/testdropbox.config 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/history.rst 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/OMEZarrReader.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/accessors-smart.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/activation.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aggdesigner-algorithm.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aircompressor.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/antlr.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aopalliance.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/apiguardian-api.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/asm.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/avatica-core.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/avatica-metrics.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-core.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-kms.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-s3.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/base.jar 13:22:03 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-anim.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-awt-util.jar 13:22:04 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13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-svg-dom.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-svggen.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-transcoder.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-util.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-xml.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/btm.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/calcite-core.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/calcite-linq4j.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/cdm-core.jar 13:22:04 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/checker-qual.jar 13:22:04 inflating: 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13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/lgpl-3.0.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/lgpl-v2.0.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/lgpl-v2.1.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/lgpl-v3.0.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/lgpl.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/matplotlib.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/mit.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/mpl-v1_0.htm 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/npl-1_1.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/path.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/pil.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/postgresql.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/psf-v2.0.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/psf-v2.5.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/scons.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/slf4j.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/tablelayout.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/which.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/zlib-libpng.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/zpl-v2.1.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/README.txt 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/Makefile 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/current.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/enums.py 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__1/OMERO3__7.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__10/OMERO3A__9.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/OMERO3A__10.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/OMERO3A__5.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__2/OMERO3A__1.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/OMERO3A__2.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/OMERO3__5.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/OMERO3A__3.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/OMERO3__5.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__5/OMERO3A__4.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__6/OMERO3A__5.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__7/OMERO3A__6.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__8/OMERO3A__6.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__9/OMERO3A__8.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__4/OMERO3__1.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__5/OMERO3__4.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__6/OMERO3__5.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__7/OMERO3__6.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.1__0/OMERO4__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4__0/OMERO3A__11.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 13:22:16 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/psql-footer.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/psql-header.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/schema.sql 13:22:17 inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/views.sql 13:22:17 + rm -f OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip 13:22:17 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26 /home/omero/workspace/OMERO-server/OMERO.server 13:22:17 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 13:22:17 ++ deactivate nondestructive 13:22:17 ++ '[' -n '' ']' 13:22:17 ++ '[' -n '' ']' 13:22:17 ++ hash -r 13:22:17 ++ '[' -n '' ']' 13:22:17 ++ unset VIRTUAL_ENV 13:22:17 ++ unset VIRTUAL_ENV_PROMPT 13:22:17 ++ '[' '!' nondestructive = nondestructive ']' 13:22:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 13:22:17 ++ export VIRTUAL_ENV 13:22:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:22:17 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:22:17 ++ export PATH 13:22:17 ++ '[' -n '' ']' 13:22:17 ++ '[' -z '' ']' 13:22:17 ++ _OLD_VIRTUAL_PS1= 13:22:17 ++ PS1='(.venv3) ' 13:22:17 ++ export PS1 13:22:17 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 13:22:17 ++ export VIRTUAL_ENV_PROMPT 13:22:17 ++ hash -r 13:22:17 + pip install -U pip 13:22:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 13:22:18 Collecting pip 13:22:18 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB) 13:22:18 Installing collected packages: pip 13:22:18 Attempting uninstall: pip 13:22:18 Found existing installation: pip 22.3.1 13:22:19 Uninstalling pip-22.3.1: 13:22:19 Successfully uninstalled pip-22.3.1 13:22:32 Successfully installed pip-26.1.2 13:22:32 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 13:22:33 Collecting zeroc-ice==3.6.5 13:22:34 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 13:22:37 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s 0:00:02 13:22:37 Installing collected packages: zeroc-ice 13:22:40 Successfully installed zeroc-ice-3.6.5 13:22:40 + pip install markdown 13:22:41 Collecting markdown 13:22:41 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB) 13:22:41 Using cached markdown-3.10.2-py3-none-any.whl (108 kB) 13:22:41 Installing collected packages: markdown 13:22:42 Successfully installed markdown-3.10.2 13:22:42 + pip install reportlab 13:22:43 Collecting reportlab 13:22:43 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 13:22:43 Collecting pillow>=9.0.0 (from reportlab) 13:22:43 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 13:22:43 Collecting charset-normalizer (from reportlab) 13:22:43 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) 13:22:44 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 13:22:44 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 13:22:44 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 13:22:44 Installing collected packages: pillow, charset-normalizer, reportlab 13:22:52 13:22:52 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0 13:22:52 + pip install omego 13:22:53 Collecting omego 13:22:53 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 13:22:53 Collecting future (from omego) 13:22:53 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 13:22:53 Collecting yaclifw>=0.1.1 (from omego) 13:22:53 Using cached yaclifw-0.2.0-py3-none-any.whl 13:22:53 Collecting six (from yaclifw>=0.1.1->omego) 13:22:54 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 13:22:54 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 13:22:54 Using cached future-1.0.0-py3-none-any.whl (491 kB) 13:22:54 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 13:22:54 Installing collected packages: six, future, yaclifw, omego 13:22:59 13:22:59 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 13:22:59 + pip install tables 13:23:00 Collecting tables 13:23:00 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 13:23:00 Collecting numpy>=1.20.0 (from tables) 13:23:00 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 13:23:00 Collecting numexpr>=2.6.2 (from tables) 13:23:00 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 13:23:00 Collecting packaging (from tables) 13:23:00 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 13:23:00 Collecting py-cpuinfo (from tables) 13:23:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 13:23:01 Collecting blosc2>=2.3.0 (from tables) 13:23:01 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 13:23:01 Collecting ndindex (from blosc2>=2.3.0->tables) 13:23:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 13:23:01 Collecting msgpack (from blosc2>=2.3.0->tables) 13:23:01 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:23:01 Collecting pydantic (from blosc2>=2.3.0->tables) 13:23:01 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 13:23:01 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 13:23:02 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 13:23:02 Collecting rich (from blosc2>=2.3.0->tables) 13:23:02 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 13:23:02 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 13:23:02 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 13:23:02 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 13:23:02 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 13:23:02 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 13:23:02 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 13:23:02 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 13:23:02 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 13:23:02 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 13:23:02 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 13:23:03 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 13:23:03 Using cached h2-4.4.0-py3-none-any.whl.metadata (3.8 kB) 13:23:03 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:23:03 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 13:23:03 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 13:23:03 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 13:23:03 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 13:23:03 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 13:23:03 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 13:23:03 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 13:23:03 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 13:23:03 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 13:23:04 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 13:23:04 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 13:23:04 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 13:23:04 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB) 13:23:04 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 13:23:04 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 13:23:04 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 13:23:04 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) 13:23:05 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 13:23:05 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 13:23:05 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 13:23:05 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB) 13:23:05 Using cached 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ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 13:23:06 Using cached packaging-26.2-py3-none-any.whl (100 kB) 13:23:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 13:23:06 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 13:23:06 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 13:23:06 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 13:23:06 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB) 13:23:06 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 13:23:06 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) 13:23:06 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 13:23:06 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 13:23:06 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 13:23:06 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 13:23:52 13:23:52 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.9.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0 13:23:52 + pip install jinja2 13:23:53 Collecting jinja2 13:23:53 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 13:23:53 Collecting MarkupSafe>=2.0 (from jinja2) 13:23:53 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 13:23:53 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 13:23:53 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 13:23:53 Installing collected packages: MarkupSafe, jinja2 13:23:54 13:23:54 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 13:23:54 + pip install omero-py 13:23:55 Collecting omero-py 13:23:55 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB) 13:23:55 Collecting appdirs (from omero-py) 13:23:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 13:23:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 13:23:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 13:23:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 13:23:56 Collecting PyYAML (from omero-py) 13:23:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 13:23:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 13:23:56 Collecting requests (from omero-py) 13:23:56 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 13:23:56 Collecting portalocker (from omero-py) 13:23:56 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 13:23:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9) 13:23:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) 13:23:56 Collecting urllib3<3,>=1.26 (from requests->omero-py) 13:23:56 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 13:23:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 13:23:56 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 13:23:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 13:23:56 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 13:23:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 13:23:56 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 13:23:56 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 13:23:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 13:24:14 13:24:14 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0 13:24:14 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 13:24:15 Collecting omero-metadata 13:24:15 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-sdu1mmz5/omero-metadata_1d2e1e61985049dcab879420b4b010da 13:24:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-sdu1mmz5/omero-metadata_1d2e1e61985049dcab879420b4b010da 13:24:16 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a16d6e427a68ad6c8ce3f5941e2381839fa2efb7 13:24:16 Installing build dependencies: started 13:24:18 Installing build dependencies: finished with status 'done' 13:24:18 Getting requirements to build wheel: started 13:24:18 Getting requirements to build wheel: finished with status 'done' 13:24:18 Preparing metadata (pyproject.toml): started 13:24:18 Preparing metadata (pyproject.toml): finished with status 'done' 13:24:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1) 13:24:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 13:24:18 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 13:24:19 Collecting pandas (from omero-metadata) 13:24:19 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 13:24:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 13:24:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 13:24:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6) 13:24:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 13:24:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 13:24:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 13:24:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 13:24:19 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 13:24:19 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 13:24:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 13:24:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 13:24:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9) 13:24:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) 13:24:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 13:24:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 13:24:19 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) 13:24:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 13:24:19 Building wheels for collected packages: omero-metadata 13:24:19 Building wheel for omero-metadata (pyproject.toml): started 13:24:19 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 13:24:19 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=813f5a6863ea05603605e8205b7bad3b476b79443163eab8527991f91d6b29ff 13:24:19 Stored in directory: /tmp/pip-ephem-wheel-cache-190mlb8t/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 13:24:19 Successfully built omero-metadata 13:24:19 Installing collected packages: python-dateutil, pandas, omero-metadata 13:24:57 13:24:58 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0 13:24:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 13:24:59 Collecting omero-cli-render 13:24:59 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-avxld2sz/omero-cli-render_8024c7668fcd46e783cf2e2b4f00c9ea 13:24:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-avxld2sz/omero-cli-render_8024c7668fcd46e783cf2e2b4f00c9ea 13:25:03 Running command git checkout -b merge_ci --track origin/merge_ci 13:25:03 Switched to a new branch 'merge_ci' 13:25:03 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:25:03 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bb2c073b33d455edef24ec8e5ad2fe0b30320b14 13:25:03 Installing build dependencies: started 13:25:05 Installing build dependencies: finished with status 'done' 13:25:05 Getting requirements to build wheel: started 13:25:05 Getting requirements to build wheel: finished with status 'done' 13:25:05 Preparing metadata (pyproject.toml): started 13:25:05 Preparing metadata (pyproject.toml): finished with status 'done' 13:25:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 13:25:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1) 13:25:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 13:25:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 13:25:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 13:25:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 13:25:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 13:25:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 13:25:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 13:25:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9) 13:25:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) 13:25:05 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 13:25:05 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 13:25:05 Building wheels for collected packages: omero-cli-render 13:25:05 Building wheel for omero-cli-render (pyproject.toml): started 13:25:06 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 13:25:06 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=b1cc65afd667ba811292f3631823376c45bdd2611c65d18bc541f67aaa902680 13:25:06 Stored in directory: /tmp/pip-ephem-wheel-cache-l97g57po/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 13:25:06 Successfully built omero-cli-render 13:25:06 Installing collected packages: omero-cli-render 13:25:06 Successfully installed omero-cli-render-0.8.2.dev0 13:25:06 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 13:25:07 Collecting omero-cli-duplicate 13:25:07 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-zwrhxmms/omero-cli-duplicate_cf6e3431fac546ea83db2a547b1b5b2d 13:25:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-zwrhxmms/omero-cli-duplicate_cf6e3431fac546ea83db2a547b1b5b2d 13:25:08 Running command git checkout -b merge_ci --track origin/merge_ci 13:25:08 Switched to a new branch 'merge_ci' 13:25:08 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:25:08 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1f8b6eefedb0b03fb0417615c64515cae44f06a8 13:25:08 Installing build dependencies: started 13:25:09 Installing build dependencies: finished with status 'done' 13:25:09 Getting requirements to build wheel: started 13:25:10 Getting requirements to build wheel: finished with status 'done' 13:25:10 Preparing metadata (pyproject.toml): started 13:25:10 Preparing metadata (pyproject.toml): finished with status 'done' 13:25:10 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1) 13:25:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 13:25:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 13:25:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 13:25:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 13:25:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 13:25:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 13:25:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 13:25:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 13:25:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9) 13:25:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 13:25:10 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 13:25:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 13:25:10 Building wheels for collected packages: omero-cli-duplicate 13:25:10 Building wheel for omero-cli-duplicate (pyproject.toml): started 13:25:10 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 13:25:10 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=071199fb7e261582dada75b64ecdf6d806794ad6139c1189cf1ce724ab3aa3db 13:25:10 Stored in directory: /tmp/pip-ephem-wheel-cache-cidzzc85/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 13:25:10 Successfully built omero-cli-duplicate 13:25:10 Installing collected packages: omero-cli-duplicate 13:25:11 Successfully installed omero-cli-duplicate-0.4.1.dev0 13:25:11 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 13:25:11 Collecting omero-cli-zarr 13:25:11 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-imgk3wh9/omero-cli-zarr_ffe84e6ddb654949b43f63a246ba1779 13:25:11 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-imgk3wh9/omero-cli-zarr_ffe84e6ddb654949b43f63a246ba1779 13:25:14 Running command git checkout -b merge_ci --track origin/merge_ci 13:25:15 Switched to a new branch 'merge_ci' 13:25:15 branch 'merge_ci' set up to track 'origin/merge_ci'. 13:25:15 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 2fe722c7703dd9c7d6d5b1dd2eaecfa6cbc82ad0 13:25:15 Installing build dependencies: started 13:25:16 Installing build dependencies: finished with status 'done' 13:25:16 Getting requirements to build wheel: started 13:25:16 Getting requirements to build wheel: finished with status 'done' 13:25:16 Installing backend dependencies: started 13:25:18 Installing backend dependencies: finished with status 'done' 13:25:18 Preparing metadata (pyproject.toml): started 13:25:18 Preparing metadata (pyproject.toml): finished with status 'done' 13:25:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1) 13:25:18 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 13:25:18 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 13:25:18 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 13:25:18 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:25:18 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) 13:25:19 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:25:19 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 13:25:19 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:19 Downloading fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 13:25:20 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 13:25:20 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 13:25:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 13:25:20 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 13:25:20 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 13:25:20 Collecting toolz (from 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satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2) 13:25:21 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 13:25:21 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 13:25:21 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 13:25:21 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Downloading s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB) 13:25:21 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 13:25:21 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 13:25:21 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:21 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 13:25:21 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0) 13:25:22 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:22 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 13:25:22 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satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0) 13:25:22 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:22 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) 13:25:22 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:23 Using cached aiobotocore-3.8.0-py3-none-any.whl.metadata (29 kB) 13:25:23 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:23 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 13:25:23 Collecting botocore<1.43.47,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:23 Using cached 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aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:24 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB) 13:25:24 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:24 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) 13:25:24 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:24 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 13:25:24 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:25 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 13:25:25 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:25 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 13:25:25 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:25 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) 13:25:25 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:25 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) 13:25:25 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.47,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) 13:25:25 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0) 13:25:25 Requirement already satisfied: idna>=2.0 in 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lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) 13:25:26 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:26 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 13:25:26 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:27 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 13:25:27 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 13:25:27 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 13:25:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9) 13:25:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 13:25:27 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 13:25:27 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) 13:25:27 Using cached click-8.4.2-py3-none-any.whl (119 kB) 13:25:27 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 13:25:27 Downloading fsspec-2026.7.0-py3-none-any.whl (206 kB) 13:25:27 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 13:25:27 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 13:25:27 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 13:25:27 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 13:25:27 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 13:25:27 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 13:25:27 Downloading s3fs-2026.7.0-py3-none-any.whl (32 kB) 13:25:27 Using cached aiobotocore-3.8.0-py3-none-any.whl (91 kB) 13:25:27 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 13:25:27 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 13:25:27 Using cached botocore-1.43.46-py3-none-any.whl (15.4 MB) 13:25:28 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 13:25:28 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 13:25:28 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 13:25:28 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 13:25:28 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 13:25:28 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 13:25:28 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 13:25:28 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 13:25:28 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 13:25:28 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 13:25:28 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 13:25:28 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 13:25:28 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 13:25:28 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 13:25:28 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 13:25:28 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 13:25:29 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 13:25:29 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 13:25:29 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 13:25:29 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 13:25:29 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 13:25:29 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 13:25:29 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 13:25:29 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 13:25:29 Building wheels for collected packages: omero-cli-zarr 13:25:29 Building wheel for omero-cli-zarr (pyproject.toml): started 13:25:29 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 13:25:29 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g2fe722c-py3-none-any.whl size=38401 sha256=39a09c7719f059757f959b61b1681d06aab0939710cdb8480253e8129b072d9d 13:25:29 Stored in directory: /tmp/pip-ephem-wheel-cache-gqvpcuiz/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 13:25:29 Successfully built omero-cli-zarr 13:25:30 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 13:26:03 Attempting uninstall: pydantic-core 13:26:03 Found existing installation: pydantic_core 2.46.4 13:26:03 Uninstalling pydantic_core-2.46.4: 13:26:03 Successfully uninstalled pydantic_core-2.46.4 13:26:35 Attempting uninstall: pydantic 13:26:35 Found existing installation: pydantic 2.13.4 13:26:35 Uninstalling pydantic-2.13.4: 13:26:36 Successfully uninstalled pydantic-2.13.4 13:27:13 13:27:14 Successfully installed Deprecated-1.3.1 aiobotocore-3.8.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.46 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g2fe722c partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 13:27:14 + pip install omero-certificates 13:27:15 Collecting omero-certificates 13:27:15 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 13:27:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1) 13:27:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 13:27:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 13:27:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 13:27:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 13:27:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 13:27:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 13:27:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 13:27:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 13:27:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9) 13:27:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 13:27:15 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 13:27:15 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 13:27:15 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 13:27:15 Installing collected packages: omero-certificates 13:27:16 Successfully installed omero-certificates-0.4.0 13:27:16 + for x in *.tar.gz 13:27:16 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 13:27:17 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 13:27:17 Installing build dependencies: started 13:27:18 Installing build dependencies: finished with status 'done' 13:27:18 Getting requirements to build wheel: started 13:27:18 Getting requirements to build wheel: finished with status 'done' 13:27:18 Preparing metadata (pyproject.toml): started 13:27:19 Preparing metadata (pyproject.toml): finished with status 'done' 13:27:19 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1) 13:27:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 13:27:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 13:27:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 13:27:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 13:27:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 13:27:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 13:27:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 13:27:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 13:27:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9) 13:27:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 13:27:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 13:27:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 13:27:19 Building wheels for collected packages: omero-dropbox 13:27:19 Building wheel for omero-dropbox (pyproject.toml): started 13:27:19 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 13:27:19 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=418739dadf059b03e5edb78320068c6dffec66e165a2341acf4905ee8698af17 13:27:19 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 13:27:19 Successfully built omero-dropbox 13:27:19 Installing collected packages: omero-dropbox 13:27:20 Successfully installed omero-dropbox-5.7.1.dev0 13:27:20 + for x in *.tar.gz 13:27:20 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 13:27:21 Processing ./omero_marshal-0.9.2.dev0.tar.gz 13:27:21 Installing build dependencies: started 13:27:22 Installing build dependencies: finished with status 'done' 13:27:22 Getting requirements to build wheel: started 13:27:22 Getting requirements to build wheel: finished with status 'done' 13:27:22 Preparing metadata (pyproject.toml): started 13:27:23 Preparing metadata (pyproject.toml): finished with status 'done' 13:27:23 Building wheels for collected packages: omero_marshal 13:27:23 Building wheel for omero_marshal (pyproject.toml): started 13:27:23 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 13:27:23 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=38c5ed4180c2d9379a343aca3132d918f03e0b02ae67689c6eaef8f061a14cc4 13:27:23 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 13:27:23 Successfully built omero_marshal 13:27:23 Installing collected packages: omero_marshal 13:27:26 Successfully installed omero_marshal-0.9.2.dev0 13:27:26 + for x in *.tar.gz 13:27:26 + pip install -U omero_py-5.22.2.dev0.tar.gz 13:27:26 Processing ./omero_py-5.22.2.dev0.tar.gz 13:27:27 Installing build dependencies: started 13:27:28 Installing build dependencies: finished with status 'done' 13:27:28 Getting requirements to build wheel: started 13:27:28 Getting requirements to build wheel: finished with status 'done' 13:27:28 Preparing metadata (pyproject.toml): started 13:27:29 Preparing metadata (pyproject.toml): finished with status 'done' 13:27:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4) 13:27:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0) 13:27:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6) 13:27:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0) 13:27:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3) 13:27:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5) 13:27:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2) 13:27:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0) 13:27:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9) 13:27:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18) 13:27:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0) 13:27:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.7.22) 13:27:29 Building wheels for collected packages: omero-py 13:27:29 Building wheel for omero-py (pyproject.toml): started 13:27:30 Building wheel for omero-py (pyproject.toml): finished with status 'done' 13:27:30 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=7b486d0a9592ab30426fac9a52a403b6ca60ab107656357f143a6b208c04f335 13:27:30 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa 13:27:30 Successfully built omero-py 13:27:30 Installing collected packages: omero-py 13:27:30 Attempting uninstall: omero-py 13:27:30 Found existing installation: omero-py 5.22.1 13:27:31 Uninstalling omero-py-5.22.1: 13:27:42 Successfully uninstalled omero-py-5.22.1 13:27:58 Successfully installed omero-py-5.22.2.dev0 13:27:58 + for x in *.tar.gz 13:27:58 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 13:27:59 Processing ./omero_scripts-5.10.1.dev0.tar.gz 13:27:59 Installing build dependencies: started 13:28:00 Installing build dependencies: finished with status 'done' 13:28:00 Getting requirements to build wheel: started 13:28:00 Getting requirements to build wheel: finished with status 'done' 13:28:00 Preparing metadata (pyproject.toml): started 13:28:01 Preparing metadata (pyproject.toml): finished with status 'done' 13:28:01 Building wheels for collected packages: omero-scripts 13:28:01 Building wheel for omero-scripts (pyproject.toml): started 13:28:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 13:28:01 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=1ae4b06d9f915261eba964aee4b88c7d82ec7b167c1e9167618f0bab3d6a7b7e 13:28:01 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 13:28:01 Successfully built omero-scripts 13:28:01 Installing collected packages: omero-scripts 13:28:02 Successfully installed omero-scripts-5.10.1.dev0 13:28:02 + for x in *.tar.gz 13:28:02 + pip install -U omero_web-5.32.1.dev0.tar.gz 13:28:03 Processing ./omero_web-5.32.1.dev0.tar.gz 13:28:03 Installing build dependencies: started 13:28:05 Installing build dependencies: finished with status 'done' 13:28:05 Getting requirements to build wheel: started 13:28:05 Getting requirements to build wheel: finished with status 'done' 13:28:05 Preparing metadata (pyproject.toml): started 13:28:06 Preparing metadata (pyproject.toml): finished with status 'done' 13:28:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0) 13:28:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 13:28:06 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 13:28:06 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 13:28:06 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB) 13:28:06 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 13:28:06 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 13:28:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 13:28:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 13:28:06 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 13:28:07 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 13:28:07 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 13:28:07 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) 13:28:07 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 13:28:07 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 13:28:07 Collecting pytz (from omero-web==5.32.1.dev0) 13:28:07 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 13:28:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0) 13:28:07 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2) 13:28:07 Collecting importlib-resources (from omero-web==5.32.1.dev0) 13:28:07 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 13:28:07 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 13:28:07 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 13:28:07 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 13:28:07 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 13:28:07 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 13:28:07 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 13:28:07 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 13:28:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 13:28:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 13:28:07 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 13:28:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 13:28:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 13:28:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 13:28:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9) 13:28:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 13:28:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 13:28:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 13:28:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 13:28:08 Using cached django-5.2.16-py3-none-any.whl (8.3 MB) 13:28:08 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 13:28:08 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 13:28:08 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 13:28:08 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) 13:28:08 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 13:28:08 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 13:28:08 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 13:28:08 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 13:28:08 Using cached wheel-0.47.0-py3-none-any.whl (32 kB) 13:28:08 Building wheels for collected packages: omero-web 13:28:08 Building wheel for omero-web (pyproject.toml): started 13:28:09 Building wheel for omero-web (pyproject.toml): finished with status 'done' 13:28:09 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820499 sha256=d90a8ff370dd4b02bdbd75deb5db3a5f628179efb9be0b6d9201d8b3ac14cfb8 13:28:09 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 13:28:09 Successfully built omero-web 13:28:10 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 13:29:16 13:29:16 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 13:29:16 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:29:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 13:29:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 13:29:17 --2026-07-29 13:29:17-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 13:29:17 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ... 13:29:17 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 13:29:17 HTTP request sent, awaiting response... 200 OK 13:29:17 Length: 139337 (136K) [text/plain] 13:29:17 Saving to: ‘Figure_To_Pdf.py’ 13:29:17 13:29:17 0K .......... .......... .......... .......... .......... 36% 2.87M 0s 13:29:17 50K .......... .......... .......... .......... .......... 73% 8.52M 0s 13:29:17 100K .......... .......... .......... ...... 100% 3.69M=0.03s 13:29:17 13:29:17 2026-07-29 13:29:17 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] 13:29:17 13:29:17 + chmod 755 Figure_To_Pdf.py 13:29:17 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 13:29:17 + omero config set omero.db.name OMERO-server 13:29:24 + omero config set omero.db.host pg 13:29:29 + omero config set omero.db.user postgres 13:29:34 + omero config set omero.data.dir /home/omero/omero-server-data 13:29:38 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 13:29:43 + omero config set omero.db.poolsize 25 13:29:48 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 13:29:52 + omero config set omero.security.trustStorePassword changeit 13:29:57 + omero config set omero.mail.config true 13:30:02 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 13:30:07 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 13:30:11 + omero certificates 13:30:16 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 13:30:16 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 13:30:16 + '[' false = true ']' 13:30:16 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 13:30:16 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 13:30:16 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 13:30:16 2026-07-29 13:30:16,799 [ omego.db] DEBUG dbcommand => upgrade 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG dbhost => localhost 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG dbname => OMERO-server 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG dbpass => omero 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG dbuser => omero 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG rootpass => omero 13:30:16 2026-07-29 13:30:16,800 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 13:30:16 2026-07-29 13:30:16,800 [omego.extern] INFO Executing : omero version 13:30:21 OMERO.py version: 13:30:21 OMERO.server version: 13:30:21 5.6.3-623-fbd2e29eae-ice36-b26 13:30:21 5.22.2.dev0 13:30:21 2026-07-29 13:30:21,787 [omego.extern] INFO Completed [4.987 s] 13:30:21 2026-07-29 13:30:21,788 [omego.extern] DEBUG Using omero CLI from omero 13:30:21 2026-07-29 13:30:21,788 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 13:30:21 2026-07-29 13:30:21,788 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:30:21 2026-07-29 13:30:21,788 [omego.extern] INFO Executing : omero config get --show-password 13:30:26 2026-07-29 13:30:26,118 [omego.extern] INFO Completed [4.330 s] 13:30:26 2026-07-29 13:30:26,118 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:30:26 2026-07-29 13:30:26,118 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO Completed [0.109 s] 13:30:26 2026-07-29 13:30:26,228 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 13:30:26 2026-07-29 13:30:26,228 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 13:30:26 13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO Executing : omero config get --show-password 13:30:30 2026-07-29 13:30:30,727 [omego.extern] INFO Completed [4.499 s] 13:30:30 2026-07-29 13:30:30,727 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:30:30 2026-07-29 13:30:30,727 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO Completed [0.059 s] 13:30:30 2026-07-29 13:30:30,786 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n' 13:30:30 2026-07-29 13:30:30,786 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO Running [current environment]: omero config get --show-password 13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO Executing : omero config get --show-password 13:30:35 2026-07-29 13:30:35,482 [omego.extern] INFO Completed [4.696 s] 13:30:35 2026-07-29 13:30:35,482 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 13:30:35 2026-07-29 13:30:35,482 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 13:30:35 2026-07-29 13:30:35,991 [omego.extern] INFO Completed [0.508 s] 13:30:35 2026-07-29 13:30:35,991 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 13:30:35 2026-07-29 13:30:35,991 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 13:30:36 2026-07-29 13:30:36,035 [ omego.db] INFO Database is already at OMERO5.4__0 13:30:36 + export LANG=en_US.UTF-8 13:30:36 + LANG=en_US.UTF-8 13:30:36 + export LANGUAGE=en_US:en 13:30:36 + LANGUAGE=en_US:en 13:30:36 + export LC_ALL=en_US.UTF-8 13:30:36 + LC_ALL=en_US.UTF-8 13:30:36 + BUILD_ID=DONT_KILL_ME 13:30:36 + omero admin start 13:30:47 No descriptor given. Using etc/grid/default.xml 13:30:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 13:30:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 13:30:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 13:30:59 Waiting on startup. Use CTRL-C to exit 13:30:59 + omero admin waitup 13:31:03 Waiting on startup. Use CTRL-C to exit 13:31:04 + omero admin diagnostics 13:31:08 13:31:08 ================================================================================ 13:31:08 OMERO Diagnostics (admin) 13:31:08 ================================================================================ 13:31:08 13:31:08 Commands: java -version 21.0.11 (/usr/bin/java) 13:31:08 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 13:31:08 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 13:31:08 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 13:31:08 Commands: psql --version 16.14 (/usr/bin/psql) 13:31:08 Commands: openssl version 3.5.527 (/usr/bin/openssl) 13:31:08 13:31:08 Component: OMERO.py 5.22.2.dev0 13:31:08 Component: OMERO.server 5.6.3-623-fbd2e29eae-ice36-b26 13:31:08 13:31:08 Server: icegridnode running 13:31:08 Server: Blitz-0 active (pid = 3316, enabled) 13:31:08 Server: Indexer-0 active (pid = 3339, enabled) 13:31:08 Server: OMERO.Glacier2 active (pid = 3344, enabled) 13:31:08 Server: OMERO.IceStorm active (pid = 3371, enabled) 13:31:08 Server: Processor-0 activating (enabled) 13:31:08 Server: Tables-0 activating (enabled) 13:31:08 13:31:08 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 13:31:08 Log files: Blitz-0.log 22.7 KB errors=0 warnings=1 13:31:08 Log files: DropBox.log n/a 13:31:08 Log files: FileServer.log n/a 13:31:08 Log files: Indexer-0.log 2.6 KB 13:31:08 Log files: MonitorServer.log n/a 13:31:08 Log files: Processor-0.log 592 B 13:31:08 Log files: Tables-0.log 841 B 13:31:08 Log files: TestDropBox.log n/a 13:31:08 Log files: master.err empty 13:31:08 Log files: master.out 30.5 KB 13:31:08 Log files: Total size 0.06 MB 13:31:08 13:31:08 13:31:08 Environment:OMERO_HOME=(unset) 13:31:08 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 13:31:08 Environment:OMERO_NODE=(unset) 13:31:08 Environment:OMERO_MASTER=(unset) 13:31:08 Environment:OMERO_USERDIR=(unset) 13:31:08 Environment:OMERO_TMPDIR=(unset) 13:31:08 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:31:08 Environment:PYTHONPATH=(unset) 13:31:08 Environment:ICE_HOME=/opt/ice-3.6.5 13:31:08 Environment:LD_LIBRARY_PATH=(unset) 13:31:08 Environment:DYLD_LIBRARY_PATH=(unset) 13:31:08 13:31:08 OMERO SSL port:4064 13:31:08 OMERO TCP port:4063 13:31:08 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 13:31:08 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 13:31:08 13:31:08 JVM settings: Blitz-${index} -Xmx7200m 13:31:08 JVM settings: Indexer-${index} -Xmx4800m 13:31:08 JVM settings: PixelData-${index} -Xmx7200m 13:31:08 JVM settings: Repository-${index} -Xmx4800m 13:31:08 13:31:08 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:31:08 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:31:08 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 13:31:08 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 13:31:08 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 13:31:08 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 13:31:08 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 13:31:08 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 13:31:08 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 13:31:09 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 13:31:09 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 13:31:09 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 13:31:09 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 13:31:09 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 13:31:09 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 13:31:09 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 13:31:09 + deactivate 13:31:09 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 13:31:09 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:31:09 + export PATH 13:31:09 + unset _OLD_VIRTUAL_PATH 13:31:09 + '[' -n '' ']' 13:31:09 + hash -r 13:31:09 + '[' -n '' ']' 13:31:09 + unset VIRTUAL_ENV 13:31:09 + unset VIRTUAL_ENV_PROMPT 13:31:09 + '[' '!' '' = nondestructive ']' 13:31:09 + unset -f deactivate 13:31:09 Finished: SUCCESS