00:33:57 Started by upstream project "Trigger" build number 319 00:33:57 originally caused by: 00:33:57 Started by timer 00:33:57 Running as SYSTEM 00:33:57 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:33:57 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10317292793160842290.sh 00:33:57 + source /home/settings.env 00:33:58 ++ OMERO_DB_HOST=pg 00:33:58 ++ OMERO_DB_USER=postgres 00:33:58 ++ OMERO_DB_PASS= 00:33:58 ++ OMERO_ROOT_PASS=omero 00:33:58 ++ OMERO_DATA_DIR=/OMERO 00:33:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:33:58 + OMERO_DB_NAME=OMERO-server 00:33:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:33:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:33:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:33:58 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:33:58 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:33:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:33:58 ++ deactivate nondestructive 00:33:58 ++ '[' -n '' ']' 00:33:58 ++ '[' -n '' ']' 00:33:58 ++ '[' -n /bin/bash -o -n '' ']' 00:33:58 ++ hash -r 00:33:58 ++ '[' -n '' ']' 00:33:58 ++ unset VIRTUAL_ENV 00:33:58 ++ '[' '!' nondestructive = nondestructive ']' 00:33:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:33:58 ++ export VIRTUAL_ENV 00:33:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:33:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:33:58 ++ export PATH 00:33:58 ++ '[' -n '' ']' 00:33:58 ++ '[' -z '' ']' 00:33:58 ++ _OLD_VIRTUAL_PS1= 00:33:58 ++ PS1='(.venv3) ' 00:33:58 ++ export PS1 00:33:58 ++ '[' -n /bin/bash -o -n '' ']' 00:33:58 ++ hash -r 00:33:58 + omero admin stop 00:34:19 Waiting on shutdown. Use CTRL-C to exit 00:34:19 .+ sleep 5 00:34:35 + deactivate 00:34:35 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:34:35 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:35 + export PATH 00:34:35 + unset _OLD_VIRTUAL_PATH 00:34:35 + '[' -n '' ']' 00:34:35 + '[' -n /bin/bash -o -n '' ']' 00:34:35 + hash -r 00:34:35 + '[' -n '' ']' 00:34:35 + unset VIRTUAL_ENV 00:34:35 + '[' '!' '' = nondestructive ']' 00:34:35 + unset -f deactivate 00:34:35 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:34:35 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:34:41 + '[' false = true ']' 00:34:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:34:41 Skipping PURGE_DATA:CleanDbAndRepo 00:34:41 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.28.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:34:45 Copied 1 artifact from "OMERO-build" build number 271 00:34:45 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 267 00:34:45 Copied 2 artifacts from "OMERO-build-build" build number 278 00:34:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15074258475457713879.sh 00:34:45 + source /home/settings.env 00:34:45 ++ OMERO_DB_HOST=pg 00:34:45 ++ OMERO_DB_USER=postgres 00:34:45 ++ OMERO_DB_PASS= 00:34:45 ++ OMERO_ROOT_PASS=omero 00:34:45 ++ OMERO_DATA_DIR=/OMERO 00:34:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:34:45 + OMERO_DB_NAME=OMERO-server 00:34:45 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:34:45 + mkdir -p /home/omero/omero-server-data 00:34:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:34:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:34:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:34:45 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:34:45 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:34:45 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:34:45 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:34:45 ++ ls OMERO.server-5.6.3-531-dc8083ff45-ice36.zip 00:34:45 + ZIP=OMERO.server-5.6.3-531-dc8083ff45-ice36.zip 00:34:45 + '[' '!' -z '' ']' 00:34:45 + DIST=OMERO.server-5.6.3-531-dc8083ff45-ice36 00:34:45 + unzip OMERO.server-5.6.3-531-dc8083ff45-ice36.zip 00:34:45 Archive: OMERO.server-5.6.3-531-dc8083ff45-ice36.zip 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/blitz/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/grid/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/profiles/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/error/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/grid/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/janelia/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/matplotlib/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/ncsa_paledit/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/seaborn/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/luts/wcif/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/analysis_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/annotation_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/export_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/figure_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/import_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/scripts/omero/util_scripts/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/server/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/share/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/share/licenses/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/misc/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__1/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__10/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__11/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__2/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__3/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__4/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__5/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__6/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__7/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__8/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__9/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__4/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__5/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__6/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__7/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.1__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.2__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.2__0/t/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.3__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.4__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.0__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.1__1/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.2__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__1/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__2/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__3/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/ 00:34:45 creating: OMERO.server-5.6.3-531-dc8083ff45-ice36/var/ 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/LICENSE.txt 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/backup.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/blitz/mail-senders.example 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/blitz/mail-server.example 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/build.properties 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/env.bat 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/env.sh 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/hibernate.properties 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/ice.config 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/logback-cli.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/logback-indexing-cli.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/logback-indexing.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/logback.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/mime.types 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/node1.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/node2.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/omero.properties 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/profiles/psql 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/rollover.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/Windows.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/error/maintainance.html 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/grid/README 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/grid/default.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/grid/templates.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/grid/windefault.xml 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/ice.config 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/internal.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/master.cfg 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/templates/robot.template 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/etc/testdropbox.config 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/history.rst 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/OMEZarrReader.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/activation.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aggdesigner-algorithm.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aircompressor.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/annotations.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/antlr.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aopalliance.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/avatica-core.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/avatica-metrics.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aws-java-sdk-core.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aws-java-sdk-kms.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/aws-java-sdk-s3.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/base.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-all.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-anim.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-awt-util.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-bridge.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-codec.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-constants.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-css.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-dom.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-ext.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-extension.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-gui-util.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-gvt.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-i18n.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-parser.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-rasterizer-ext.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-rasterizer.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-script.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-slideshow.jar 00:34:45 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/lib/client/batik-squiggle-ext.jar 00:34:45 inflating: 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OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__4/OMERO3__1.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__5/OMERO3__4.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__6/OMERO3__5.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO3__7/OMERO3__6.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/schema.sql 00:34:48 inflating: OMERO.server-5.6.3-531-dc8083ff45-ice36/sql/psql/OMERO5.4__0/views.sql 00:34:48 + rm -f OMERO.server-5.6.3-531-dc8083ff45-ice36.zip 00:34:48 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-531-dc8083ff45-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:34:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:34:48 ++ deactivate nondestructive 00:34:48 ++ '[' -n '' ']' 00:34:48 ++ '[' -n '' ']' 00:34:48 ++ '[' -n /bin/bash -o -n '' ']' 00:34:48 ++ hash -r 00:34:48 ++ '[' -n '' ']' 00:34:48 ++ unset VIRTUAL_ENV 00:34:48 ++ '[' '!' nondestructive = nondestructive ']' 00:34:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:34:48 ++ export VIRTUAL_ENV 00:34:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:48 ++ export PATH 00:34:48 ++ '[' -n '' ']' 00:34:48 ++ '[' -z '' ']' 00:34:48 ++ _OLD_VIRTUAL_PS1= 00:34:48 ++ PS1='(.venv3) ' 00:34:48 ++ export PS1 00:34:48 ++ '[' -n /bin/bash -o -n '' ']' 00:34:48 ++ hash -r 00:34:48 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:34:48 Collecting zeroc-ice==3.6.5 00:34:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:34:51 Installing collected packages: zeroc-ice 00:34:52 Successfully installed zeroc-ice-3.6.5 00:34:52 + pip install -U pip future 00:34:52 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:34:52 Collecting pip 00:34:53 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB) 00:34:53 Collecting future 00:34:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:34:53 Installing collected packages: pip, future 00:34:53 Attempting uninstall: pip 00:34:53 Found existing installation: pip 21.2.3 00:34:53 Uninstalling pip-21.2.3: 00:34:53 Successfully uninstalled pip-21.2.3 00:34:54 Successfully installed future-1.0.0 pip-24.3.1 00:34:54 + pip install markdown 00:34:55 Collecting markdown 00:34:55 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 00:34:55 Collecting importlib-metadata>=4.4 (from markdown) 00:34:55 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) 00:34:56 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 00:34:56 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB) 00:34:56 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 00:34:56 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) 00:34:56 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB) 00:34:56 Installing collected packages: zipp, importlib-metadata, markdown 00:34:56 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.21.0 00:34:57 + pip install reportlab 00:34:57 Collecting reportlab 00:34:57 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB) 00:34:58 Collecting pillow>=9.0.0 (from reportlab) 00:34:58 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB) 00:34:58 Collecting chardet (from reportlab) 00:34:58 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:34:58 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB) 00:34:58 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB) 00:34:58 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:34:58 Installing collected packages: pillow, chardet, reportlab 00:34:59 Successfully installed chardet-5.2.0 pillow-11.0.0 reportlab-4.2.5 00:35:00 + pip install omego 00:35:00 Collecting omego 00:35:00 Using cached omego-0.7.0-py3-none-any.whl 00:35:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:35:00 Collecting yaclifw>=0.1.1 (from omego) 00:35:00 Using cached yaclifw-0.2.0-py3-none-any.whl 00:35:00 Collecting six (from yaclifw>=0.1.1->omego) 00:35:01 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:35:01 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:35:01 Installing collected packages: six, yaclifw, omego 00:35:01 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:35:01 + pip install tables 00:35:01 Collecting tables 00:35:01 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:35:02 Collecting numpy>=1.19.0 (from tables) 00:35:02 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:35:02 Collecting numexpr>=2.6.2 (from tables) 00:35:02 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:35:02 Collecting packaging (from tables) 00:35:02 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) 00:35:02 Collecting py-cpuinfo (from tables) 00:35:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:35:02 Collecting blosc2>=2.3.0 (from tables) 00:35:03 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:35:03 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:35:03 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 00:35:03 Collecting msgpack (from blosc2>=2.3.0->tables) 00:35:03 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 00:35:03 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:35:03 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:35:04 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB) 00:35:04 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 00:35:04 Using cached packaging-24.2-py3-none-any.whl (65 kB) 00:35:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:35:04 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB) 00:35:04 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 00:35:05 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:35:08 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2 00:35:08 + pip install jinja2 00:35:08 Collecting jinja2 00:35:10 Downloading jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB) 00:35:10 Collecting MarkupSafe>=2.0 (from jinja2) 00:35:10 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 00:35:10 Downloading jinja2-3.1.5-py3-none-any.whl (134 kB) 00:35:10 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB) 00:35:10 Installing collected packages: MarkupSafe, jinja2 00:35:10 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.5 00:35:10 + pip install omero-py 00:35:11 Collecting omero-py 00:35:11 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB) 00:35:11 Collecting urllib3<2 (from omero-py) 00:35:11 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 00:35:11 Collecting appdirs (from omero-py) 00:35:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:35:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:35:12 Collecting numpy<2 (from omero-py) 00:35:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:35:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.0.0) 00:35:12 Collecting PyYAML (from omero-py) 00:35:12 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:35:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:35:12 Collecting requests (from omero-py) 00:35:12 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:35:12 Collecting portalocker (from omero-py) 00:35:12 Using cached portalocker-3.0.0-py3-none-any.whl.metadata (8.5 kB) 00:35:12 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:35:12 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB) 00:35:12 Collecting idna<4,>=2.5 (from requests->omero-py) 00:35:12 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 00:35:12 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:35:13 Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB) 00:35:13 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB) 00:35:13 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:35:13 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:35:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:35:13 Using cached portalocker-3.0.0-py3-none-any.whl (19 kB) 00:35:13 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 00:35:13 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:35:14 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB) 00:35:14 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB) 00:35:14 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:35:14 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:35:14 Attempting uninstall: numpy 00:35:14 Found existing installation: numpy 2.0.2 00:35:14 Uninstalling numpy-2.0.2: 00:35:14 Successfully uninstalled numpy-2.0.2 00:35:20 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.12.14 charset-normalizer-3.4.0 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-3.0.0 requests-2.32.3 urllib3-1.26.20 00:35:20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:35:21 Collecting omero-metadata 00:35:21 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-qofeo35j/omero-metadata_5ee6e343c19f4fe9b91f03fd876b2f29 00:35:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-qofeo35j/omero-metadata_5ee6e343c19f4fe9b91f03fd876b2f29 00:35:23 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a5143048c0ea74901d943d6191c6eb1e49e63c9d 00:35:23 Installing build dependencies: started 00:35:25 Installing build dependencies: finished with status 'done' 00:35:25 Getting requirements to build wheel: started 00:35:25 Getting requirements to build wheel: finished with status 'done' 00:35:25 Preparing metadata (pyproject.toml): started 00:35:26 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5) 00:35:26 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 00:35:26 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.5) 00:35:26 Collecting pandas (from omero-metadata) 00:35:26 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 00:35:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 00:35:26 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:35:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:35:26 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:35:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.0.0) 00:35:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:35:26 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:35:26 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.0.0) 00:35:26 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2) 00:35:26 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:35:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:35:27 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:35:27 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 00:35:27 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:35:27 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) 00:35:27 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:35:27 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.0) 00:35:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 00:35:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.12.14) 00:35:27 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:35:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:35:27 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) 00:35:27 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB) 00:35:28 Building wheels for collected packages: omero-metadata 00:35:28 Building wheel for omero-metadata (pyproject.toml): started 00:35:28 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:35:28 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39188 sha256=ca348d7220b55cbb9b04b20a8341ba78684ae467ea52af0031dc4243d113fd02 00:35:28 Stored in directory: /tmp/pip-ephem-wheel-cache-acp8iors/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:35:28 Successfully built omero-metadata 00:35:28 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:35:33 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2 00:35:33 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:35:34 Collecting omero-cli-render 00:35:34 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-x8pdx_iu/omero-cli-render_cdd8413c7fc54621a56ee044d7013f7d 00:35:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-x8pdx_iu/omero-cli-render_cdd8413c7fc54621a56ee044d7013f7d 00:35:35 Running command git checkout -b merge_ci --track origin/merge_ci 00:35:35 Switched to a new branch 'merge_ci' 00:35:35 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:35:35 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a71ba65608a0ca8bfaae78d6de7e53333f45a256 00:35:35 Installing build dependencies: started 00:35:37 Installing build dependencies: finished with status 'done' 00:35:37 Getting requirements to build wheel: started 00:35:37 Getting requirements to build wheel: finished with status 'done' 00:35:37 Preparing metadata (pyproject.toml): started 00:35:37 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 00:35:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5) 00:35:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 00:35:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:35:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:35:37 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:35:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.0.0) 00:35:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:35:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:35:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.0.0) 00:35:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.0) 00:35:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 00:35:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.12.14) 00:35:37 Building wheels for collected packages: omero-cli-render 00:35:37 Building wheel for omero-cli-render (pyproject.toml): started 00:35:37 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:35:37 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19513 sha256=faafa387b74ed2b2018dc6c183fffa67f59ada31b4e24ce5415e05b7b289a0e0 00:35:37 Stored in directory: /tmp/pip-ephem-wheel-cache-d9s0iw_q/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:35:37 Successfully built omero-cli-render 00:35:37 Installing collected packages: omero-cli-render 00:35:38 Successfully installed omero-cli-render-0.8.2.dev0 00:35:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:35:38 Collecting omero-cli-duplicate 00:35:38 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-0bu4gqes/omero-cli-duplicate_f4ca870d2a534118b03a982e98eab3e9 00:35:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-0bu4gqes/omero-cli-duplicate_f4ca870d2a534118b03a982e98eab3e9 00:35:39 Running command git checkout -b merge_ci --track origin/merge_ci 00:35:39 Switched to a new branch 'merge_ci' 00:35:39 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:35:39 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 68d5b66652b1293444c3db19012ec0bd4746d0a4 00:35:39 Installing build dependencies: started 00:35:41 Installing build dependencies: finished with status 'done' 00:35:41 Getting requirements to build wheel: started 00:35:41 Getting requirements to build wheel: finished with status 'done' 00:35:41 Preparing metadata (pyproject.toml): started 00:35:41 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:41 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5) 00:35:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 00:35:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:35:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:35:41 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:35:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0) 00:35:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 00:35:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:35:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:35:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.0.0) 00:35:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0) 00:35:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 00:35:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.12.14) 00:35:41 Building wheels for collected packages: omero-cli-duplicate 00:35:41 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:35:42 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:35:42 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=2e12991e70afd2caf50460b6964d45f66c608534fb84ec2c64dde03ecbed2f3d 00:35:42 Stored in directory: /tmp/pip-ephem-wheel-cache-4_ydjan6/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:35:42 Successfully built omero-cli-duplicate 00:35:42 Installing collected packages: omero-cli-duplicate 00:35:42 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:35:42 + pip install omero-certificates 00:35:42 Collecting omero-certificates 00:35:42 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 00:35:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5) 00:35:43 Collecting distro==1.8.0 (from omero-certificates) 00:35:43 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 00:35:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 00:35:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:35:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:35:43 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:35:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0) 00:35:43 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 00:35:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:35:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:35:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.0.0) 00:35:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0) 00:35:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 00:35:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.12.14) 00:35:43 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 00:35:43 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 00:35:43 Installing collected packages: distro, omero-certificates 00:35:43 Successfully installed distro-1.8.0 omero-certificates-0.3.2 00:35:43 + for x in *.tar.gz 00:35:43 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:35:43 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:35:43 Installing build dependencies: started 00:35:46 Installing build dependencies: finished with status 'done' 00:35:46 Getting requirements to build wheel: started 00:35:46 Getting requirements to build wheel: finished with status 'done' 00:35:46 Preparing metadata (pyproject.toml): started 00:35:46 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:46 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5) 00:35:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 00:35:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:35:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:35:46 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:35:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0) 00:35:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 00:35:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:35:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:35:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.0.0) 00:35:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0) 00:35:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 00:35:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.12.14) 00:35:46 Building wheels for collected packages: omero-dropbox 00:35:46 Building wheel for omero-dropbox (pyproject.toml): started 00:35:46 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:35:46 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=2c0c5ae5403c2c7cb8ea92627fd5237f4a49bc89a5a7e28ff7d24b5d5d144876 00:35:46 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:35:46 Successfully built omero-dropbox 00:35:46 Installing collected packages: omero-dropbox 00:35:46 Successfully installed omero-dropbox-5.7.1.dev0 00:35:47 + for x in *.tar.gz 00:35:47 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:35:47 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:35:47 Installing build dependencies: started 00:35:49 Installing build dependencies: finished with status 'done' 00:35:49 Getting requirements to build wheel: started 00:35:49 Getting requirements to build wheel: finished with status 'done' 00:35:49 Preparing metadata (pyproject.toml): started 00:35:49 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:49 Building wheels for collected packages: omero_marshal 00:35:49 Building wheel for omero_marshal (pyproject.toml): started 00:35:50 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:35:50 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88032 sha256=f3dc84d8b74bfb8f786d7559f3da4410d8352c550c074de4de878033eeb9ca36 00:35:50 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:35:50 Successfully built omero_marshal 00:35:50 Installing collected packages: omero_marshal 00:35:50 Successfully installed omero_marshal-0.9.1.dev0 00:35:50 + for x in *.tar.gz 00:35:50 + pip install -U omero_py-5.19.6.dev0.tar.gz 00:35:51 Processing ./omero_py-5.19.6.dev0.tar.gz 00:35:51 Installing build dependencies: started 00:35:53 Installing build dependencies: finished with status 'done' 00:35:53 Getting requirements to build wheel: started 00:35:53 Getting requirements to build wheel: finished with status 'done' 00:35:53 Preparing metadata (pyproject.toml): started 00:35:53 Preparing metadata (pyproject.toml): finished with status 'done' 00:35:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20) 00:35:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4) 00:35:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0) 00:35:53 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4) 00:35:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0) 00:35:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2) 00:35:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5) 00:35:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3) 00:35:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.0.0) 00:35:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0) 00:35:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10) 00:35:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.12.14) 00:35:53 Building wheels for collected packages: omero-py 00:35:53 Building wheel for omero-py (pyproject.toml): started 00:35:55 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:35:55 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783250 sha256=b8bf2d37e914a9afad9ce53d7d883755909251c29b9ad7eaf7633908ce5f693c 00:35:55 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d 00:35:55 Successfully built omero-py 00:35:55 Installing collected packages: omero-py 00:35:55 Attempting uninstall: omero-py 00:35:55 Found existing installation: omero-py 5.19.5 00:35:55 Uninstalling omero-py-5.19.5: 00:35:55 Successfully uninstalled omero-py-5.19.5 00:35:57 Successfully installed omero-py-5.19.6.dev0 00:35:57 + for x in *.tar.gz 00:35:57 + pip install -U omero_scripts-5.9.1.dev0.tar.gz 00:35:58 Processing ./omero_scripts-5.9.1.dev0.tar.gz 00:35:58 Installing build dependencies: started 00:36:00 Installing build dependencies: finished with status 'done' 00:36:00 Getting requirements to build wheel: started 00:36:00 Getting requirements to build wheel: finished with status 'done' 00:36:00 Preparing metadata (pyproject.toml): started 00:36:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:36:00 Building wheels for collected packages: omero-scripts 00:36:00 Building wheel for omero-scripts (pyproject.toml): started 00:36:00 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:36:00 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136799 sha256=ef5c1e041a4a5815c98d63607a49f3257662776117cf46b7a9ebd411429518f3 00:36:00 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c 00:36:01 Successfully built omero-scripts 00:36:01 Installing collected packages: omero-scripts 00:36:01 Successfully installed omero-scripts-5.9.1.dev0 00:36:01 + for x in *.tar.gz 00:36:01 + pip install -U omero_web-5.28.1.dev0.tar.gz 00:36:01 Processing ./omero_web-5.28.1.dev0.tar.gz 00:36:02 Installing build dependencies: started 00:36:04 Installing build dependencies: finished with status 'done' 00:36:04 Getting requirements to build wheel: started 00:36:04 Getting requirements to build wheel: finished with status 'done' 00:36:04 Preparing metadata (pyproject.toml): started 00:36:04 Preparing metadata (pyproject.toml): finished with status 'done' 00:36:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (5.19.6.dev0) 00:36:04 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.28.1.dev0) 00:36:04 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:36:04 Collecting Django<4.3,>=4.2.3 (from omero-web==5.28.1.dev0) 00:36:04 Using cached Django-4.2.17-py3-none-any.whl.metadata (4.1 kB) 00:36:05 Collecting django-pipeline (from omero-web==5.28.1.dev0) 00:36:05 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) 00:36:05 Collecting django-cors-headers==3.7.0 (from omero-web==5.28.1.dev0) 00:36:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:36:05 Collecting django-csp (from omero-web==5.28.1.dev0) 00:36:05 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:36:05 Collecting whitenoise>=5.3.0 (from omero-web==5.28.1.dev0) 00:36:05 Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB) 00:36:05 Collecting gunicorn>=19.3 (from omero-web==5.28.1.dev0) 00:36:05 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 00:36:05 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (0.9.1.dev0) 00:36:05 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (11.0.0) 00:36:05 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (2024.2) 00:36:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (3.0.0) 00:36:05 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (24.2) 00:36:05 Collecting importlib-resources (from omero-web==5.28.1.dev0) 00:36:05 Using cached importlib_resources-6.4.5-py3-none-any.whl.metadata (4.0 kB) 00:36:05 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0) 00:36:05 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:36:05 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0) 00:36:05 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 00:36:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.20) 00:36:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.4.4) 00:36:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.0.0) 00:36:05 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.4) 00:36:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (6.0.2) 00:36:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.6.5) 00:36:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (2.32.3) 00:36:06 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.28.1.dev0) (53.0.0) 00:36:06 Collecting wheel (from django-pipeline->omero-web==5.28.1.dev0) 00:36:06 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 00:36:06 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.28.1.dev0) (3.21.0) 00:36:06 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.28.1.dev0) 00:36:06 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:36:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.4.0) 00:36:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.10) 00:36:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (2024.12.14) 00:36:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:36:06 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:36:06 Using cached Django-4.2.17-py3-none-any.whl (8.0 MB) 00:36:06 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 00:36:06 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB) 00:36:06 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:36:06 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) 00:36:07 Using cached importlib_resources-6.4.5-py3-none-any.whl (36 kB) 00:36:07 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:36:07 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 00:36:07 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 00:36:07 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:36:07 Building wheels for collected packages: omero-web 00:36:07 Building wheel for omero-web (pyproject.toml): started 00:36:08 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:36:08 Created wheel for omero-web: filename=omero_web-5.28.1.dev0-py3-none-any.whl size=2771008 sha256=2150c7b2e82f92b8022dd427526b5565de19a5805837b1558b8aa2c1f75304fa 00:36:08 Stored in directory: /home/omero/.cache/pip/wheels/97/1e/88/508867809512b265cdeb53be905e01f64ea0b8d6c0b64f8ebd 00:36:08 Successfully built omero-web 00:36:08 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web 00:36:11 Successfully installed Django-4.2.17 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.4.5 omero-web-5.28.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.8.2 00:36:11 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:36:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:36:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:36:12 --2024-12-24 00:36:12-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:36:13 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ... 00:36:13 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 00:36:13 HTTP request sent, awaiting response... 200 OK 00:36:13 Length: 102311 (100K) [text/plain] 00:36:13 Saving to: ‘Figure_To_Pdf.py’ 00:36:13 00:36:13 0K .......... .......... .......... .......... .......... 50% 3.60M 0s 00:36:13 50K .......... .......... .......... .......... ......... 100% 5.17M=0.02s 00:36:13 00:36:13 2024-12-24 00:36:13 (4.25 MB/s) - ‘Figure_To_Pdf.py’ saved [102311/102311] 00:36:13 00:36:13 + chmod 755 Figure_To_Pdf.py 00:36:13 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:36:13 + omero config set omero.db.name OMERO-server 00:36:14 + omero config set omero.db.host pg 00:36:16 + omero config set omero.db.user postgres 00:36:17 + omero config set omero.data.dir /home/omero/omero-server-data 00:36:19 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:36:20 + omero config set omero.db.poolsize 25 00:36:22 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:36:23 + omero config set omero.security.trustStorePassword changeit 00:36:24 + omero config set omero.mail.config true 00:36:26 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:36:27 + omero config set omero.mail.host smtp.dundee.ac.uk 00:36:29 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:36:30 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:36:32 + omero certificates 00:36:33 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:36:33 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:36:34 + '[' false = true ']' 00:36:34 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:36:34 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:36:34 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG dbcommand => upgrade 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG dbhost => localhost 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG dbname => OMERO-server 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG dbpass => omero 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG dbuser => omero 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG rootpass => omero 00:36:34 2024-12-24 00:36:34,402 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:36:34 2024-12-24 00:36:34,402 [omego.extern] INFO Executing : omero version 00:36:35 OMERO.py version: 00:36:35 OMERO.server version: 00:36:35 5.6.3-531-dc8083ff45-ice36 00:36:35 5.19.6.dev0 00:36:35 2024-12-24 00:36:35,866 [omego.extern] INFO Completed [1.464 s] 00:36:35 2024-12-24 00:36:35,866 [omego.extern] DEBUG Using omero CLI from omero 00:36:35 2024-12-24 00:36:35,866 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:36:35 2024-12-24 00:36:35,866 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:36:35 2024-12-24 00:36:35,866 [omego.extern] INFO Executing : omero config get --show-password 00:36:37 2024-12-24 00:36:37,327 [omego.extern] INFO Completed [1.460 s] 00:36:37 2024-12-24 00:36:37,327 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:36:37 2024-12-24 00:36:37,328 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:36:37 2024-12-24 00:36:37,892 [omego.extern] INFO Completed [0.564 s] 00:36:37 2024-12-24 00:36:37,892 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 00:36:37 2024-12-24 00:36:37,893 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 00:36:37 00:36:37 2024-12-24 00:36:37,893 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:36:37 2024-12-24 00:36:37,893 [omego.extern] INFO Executing : omero config get --show-password 00:36:39 2024-12-24 00:36:39,428 [omego.extern] INFO Completed [1.536 s] 00:36:39 2024-12-24 00:36:39,429 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:36:39 2024-12-24 00:36:39,429 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:36:39 2024-12-24 00:36:39,652 [omego.extern] INFO Completed [0.223 s] 00:36:39 2024-12-24 00:36:39,652 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.12") at port "5432".\n' 00:36:39 2024-12-24 00:36:39,652 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:36:39 2024-12-24 00:36:39,652 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:36:39 2024-12-24 00:36:39,652 [omego.extern] INFO Executing : omero config get --show-password 00:36:41 2024-12-24 00:36:41,118 [omego.extern] INFO Completed [1.466 s] 00:36:41 2024-12-24 00:36:41,119 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:36:41 2024-12-24 00:36:41,119 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:36:41 2024-12-24 00:36:41,600 [omego.extern] INFO Completed [0.481 s] 00:36:41 2024-12-24 00:36:41,600 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:36:41 2024-12-24 00:36:41,600 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:36:41 2024-12-24 00:36:41,602 [ omego.db] INFO Database is already at OMERO5.4__0 00:36:41 + export LANG=en_US.UTF-8 00:36:41 + LANG=en_US.UTF-8 00:36:41 + export LANGUAGE=en_US:en 00:36:41 + LANGUAGE=en_US:en 00:36:41 + export LC_ALL=en_US.UTF-8 00:36:41 + LC_ALL=en_US.UTF-8 00:36:41 + BUILD_ID=DONT_KILL_ME 00:36:41 + omero admin start 00:36:54 No descriptor given. Using etc/grid/default.xml 00:37:05 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:37:05 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:37:05 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:37:05 Waiting on startup. Use CTRL-C to exit 00:37:05 + omero admin waitup 00:37:07 Waiting on startup. Use CTRL-C to exit 00:37:07 + omero admin diagnostics 00:37:08 00:37:08 ================================================================================ 00:37:08 OMERO Diagnostics (admin) 00:37:08 ================================================================================ 00:37:08 00:37:08 Commands: java -version 11.0.24 (/usr/bin/java) 00:37:08 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:37:08 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:37:08 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:37:08 Commands: psql --version 16.4 (/usr/bin/psql) 00:37:08 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:37:08 00:37:08 Component: OMERO.py 5.19.6.dev0 00:37:08 Component: OMERO.server 5.6.3-531-dc8083ff45-ice36 00:37:08 00:37:08 Server: icegridnode running 00:37:08 Server: Blitz-0 active (pid = 42245, enabled) 00:37:08 Server: Indexer-0 activating (enabled) 00:37:08 Server: OMERO.Glacier2 active (pid = 42267, enabled) 00:37:09 Server: OMERO.IceStorm active (pid = 42292, enabled) 00:37:09 Server: Processor-0 active (pid = 42274, enabled) 00:37:09 Server: Tables-0 active (pid = 42299, enabled) 00:37:09 00:37:09 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:37:09 Log files: Blitz-0.log 30.6 KB errors=0 warnings=1 00:37:09 Log files: DropBox.log n/a 00:37:09 Log files: FileServer.log n/a 00:37:09 Log files: Indexer-0.log 598 B 00:37:09 Log files: MonitorServer.log n/a 00:37:09 Log files: Processor-0.log 735 B 00:37:09 Log files: Tables-0.log 961 B 00:37:09 Log files: TestDropBox.log n/a 00:37:09 Log files: master.err 180 B 00:37:09 Log files: master.out 30.1 KB 00:37:09 Log files: Total size 0.06 MB 00:37:09 00:37:09 00:37:09 Environment:OMERO_HOME=(unset) 00:37:09 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:37:09 Environment:OMERO_NODE=(unset) 00:37:09 Environment:OMERO_MASTER=(unset) 00:37:09 Environment:OMERO_USERDIR=(unset) 00:37:09 Environment:OMERO_TMPDIR=(unset) 00:37:09 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:37:09 Environment:PYTHONPATH=(unset) 00:37:09 Environment:ICE_HOME=/opt/ice-3.6.5 00:37:09 Environment:LD_LIBRARY_PATH=(unset) 00:37:09 Environment:DYLD_LIBRARY_PATH=(unset) 00:37:09 00:37:09 OMERO SSL port:4064 00:37:09 OMERO TCP port:4063 00:37:09 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:37:09 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:37:09 00:37:09 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:37:09 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:37:09 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:37:09 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:37:09 00:37:09 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 24 December 2024 fb70726649e3fc27b3fb542d309058d51a51b3c6 00:37:09 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 24 December 2024 fb70726649e3fc27b3fb542d309058d51a51b3c6 00:37:09 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 24 December 2024 fb70726649e3fc27b3fb542d309058d51a51b3c6 00:37:09 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 December 2024 af02e253c4ac197a61c480e155993608d259bcc6 00:37:09 Jar: lib/server/omero-blitz.jar jar 5.8.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-common.jar jar 5.7.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-gateway.jar jar 5.10.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-model.jar jar 5.7.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-renderer.jar jar 5.6.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-romio.jar jar 5.8.1-SNAPSHOT 00:37:09 Jar: lib/server/omero-server.jar jar 5.7.1-SNAPSHOT 00:37:09 + deactivate 00:37:09 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:37:09 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:37:09 + export PATH 00:37:09 + unset _OLD_VIRTUAL_PATH 00:37:09 + '[' -n '' ']' 00:37:09 + '[' -n /bin/bash -o -n '' ']' 00:37:09 + hash -r 00:37:09 + '[' -n '' ']' 00:37:09 + unset VIRTUAL_ENV 00:37:09 + '[' '!' '' = nondestructive ']' 00:37:09 + unset -f deactivate 00:37:09 Finished: SUCCESS