10:23:11 Started by upstream project "Trigger" build number 27 10:23:11 originally caused by: 10:23:11 Started by user devspace 10:23:11 Running as SYSTEM 10:23:11 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 10:23:11 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12033888569142149327.sh 10:23:11 + source /home/settings.env 10:23:11 ++ OMERO_DB_HOST=pg 10:23:11 ++ OMERO_DB_USER=postgres 10:23:11 ++ OMERO_DB_PASS= 10:23:11 ++ OMERO_ROOT_PASS=omero 10:23:11 ++ OMERO_DATA_DIR=/OMERO 10:23:11 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:23:11 + OMERO_DB_NAME=OMERO-server 10:23:11 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 10:23:11 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:23:11 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:23:11 + OMERO_DATA_DIR=/home/omero/omero-server-data 10:23:11 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 10:23:11 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 10:23:11 ++ deactivate nondestructive 10:23:11 ++ '[' -n '' ']' 10:23:11 ++ '[' -n '' ']' 10:23:11 ++ '[' -n /bin/bash -o -n '' ']' 10:23:11 ++ hash -r 10:23:11 ++ '[' -n '' ']' 10:23:11 ++ unset VIRTUAL_ENV 10:23:11 ++ '[' '!' nondestructive = nondestructive ']' 10:23:11 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 10:23:11 ++ export VIRTUAL_ENV 10:23:11 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:23:11 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:23:11 ++ export PATH 10:23:11 ++ '[' -n '' ']' 10:23:11 ++ '[' -z '' ']' 10:23:11 ++ _OLD_VIRTUAL_PS1= 10:23:11 ++ PS1='(.venv3) ' 10:23:11 ++ export PS1 10:23:11 ++ '[' -n /bin/bash -o -n '' ']' 10:23:11 ++ hash -r 10:23:11 + omero admin stop 10:23:26 Waiting on shutdown. Use CTRL-C to exit 10:23:26 .+ sleep 5 10:23:42 + deactivate 10:23:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 10:23:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:23:42 + export PATH 10:23:42 + unset _OLD_VIRTUAL_PATH 10:23:42 + '[' -n '' ']' 10:23:42 + '[' -n /bin/bash -o -n '' ']' 10:23:42 + hash -r 10:23:42 + '[' -n '' ']' 10:23:42 + unset VIRTUAL_ENV 10:23:42 + '[' '!' '' = nondestructive ']' 10:23:42 + unset -f deactivate 10:23:42 + rm -rf /home/omero/workspace/OMERO-server/.venv3 10:23:51 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 10:23:56 + '[' false = true ']' 10:23:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 10:23:56 Skipping PURGE_DATA:CleanDbAndRepo 10:23:56 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 10:24:03 Copied 1 artifact from "OMERO-build" build number 23 10:24:03 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 23 10:24:03 Copied 2 artifacts from "OMERO-build-build" build number 24 10:24:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10066632293308531947.sh 10:24:03 + source /home/settings.env 10:24:03 ++ OMERO_DB_HOST=pg 10:24:03 ++ OMERO_DB_USER=postgres 10:24:03 ++ OMERO_DB_PASS= 10:24:03 ++ OMERO_ROOT_PASS=omero 10:24:03 ++ OMERO_DATA_DIR=/OMERO 10:24:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:24:03 + OMERO_DB_NAME=OMERO-server 10:24:03 + OMERO_DATA_DIR=/home/omero/omero-server-data 10:24:03 + mkdir -p /home/omero/omero-server-data 10:24:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 10:24:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:24:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:24:03 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 10:24:03 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 10:24:03 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 10:24:03 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 10:24:03 ++ ls OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:24:03 + ZIP=OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:24:03 + '[' '!' -z '' ']' 10:24:03 + DIST=OMERO.server-5.6.3-451-f92d3a915e-ice36 10:24:03 + unzip OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:24:03 Archive: OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/blitz/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/grid/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/profiles/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/error/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/grid/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/luts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/luts/janelia/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/luts/ncsa_paledit/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/luts/wcif/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/analysis_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/annotation_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/export_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/figure_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/import_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/scripts/omero/util_scripts/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/server/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/share/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/share/licenses/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/misc/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__1/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__10/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__11/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__2/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__3/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__4/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__5/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__6/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__7/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__8/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3A__9/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3__4/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3__5/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3__6/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO3__7/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4.1__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4.2__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4.2__0/t/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4.3__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4.4__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO4__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.0__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.1__1/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.2__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__1/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__2/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__3/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/ 10:24:03 creating: OMERO.server-5.6.3-451-f92d3a915e-ice36/var/ 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/LICENSE.txt 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/backup.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/blitz/mail-senders.example 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/blitz/mail-server.example 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/build.properties 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/env.bat 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/env.sh 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/hibernate.properties 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/ice.config 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/logback-cli.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/logback-indexing-cli.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/logback-indexing.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/logback.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/mime.types 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/node1.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/node2.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/omero.properties 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/profiles/psql 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/rollover.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/Windows.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/error/maintainance.html 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/grid/README 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/grid/default.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/grid/templates.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/grid/windefault.xml 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/ice.config 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/internal.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/master.cfg 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/templates/robot.template 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/etc/testdropbox.config 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/history.rst 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/OMEZarrReader.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/activation.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aggdesigner-algorithm.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aircompressor.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/annotations.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/antlr.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aopalliance.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/avatica-core.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/avatica-metrics.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aws-java-sdk-core.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aws-java-sdk-kms.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/aws-java-sdk-s3.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/base.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-all.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-anim.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-awt-util.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-bridge.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-codec.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-constants.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-css.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-dom.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-ext.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-extension.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-gui-util.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-gvt.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-i18n.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-parser.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-rasterizer-ext.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-rasterizer.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-script.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-slideshow.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-squiggle-ext.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-squiggle.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-svg-dom.jar 10:24:03 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/lib/client/batik-svgbrowser.jar 10:24:03 inflating: 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OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/psql-header.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/schema.sql 10:24:06 inflating: OMERO.server-5.6.3-451-f92d3a915e-ice36/sql/psql/OMERO5.4__0/views.sql 10:24:06 + rm -f OMERO.server-5.6.3-451-f92d3a915e-ice36.zip 10:24:06 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-451-f92d3a915e-ice36 /home/omero/workspace/OMERO-server/OMERO.server 10:24:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 10:24:06 ++ deactivate nondestructive 10:24:06 ++ '[' -n '' ']' 10:24:06 ++ '[' -n '' ']' 10:24:06 ++ '[' -n /bin/bash -o -n '' ']' 10:24:06 ++ hash -r 10:24:06 ++ '[' -n '' ']' 10:24:06 ++ unset VIRTUAL_ENV 10:24:06 ++ '[' '!' nondestructive = nondestructive ']' 10:24:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 10:24:06 ++ export VIRTUAL_ENV 10:24:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:24:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:24:06 ++ export PATH 10:24:06 ++ '[' -n '' ']' 10:24:06 ++ '[' -z '' ']' 10:24:06 ++ _OLD_VIRTUAL_PS1= 10:24:06 ++ PS1='(.venv3) ' 10:24:06 ++ export PS1 10:24:06 ++ '[' -n /bin/bash -o -n '' ']' 10:24:06 ++ hash -r 10:24:06 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 10:24:07 Collecting zeroc-ice==3.6.5 10:24:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 10:24:10 Installing collected packages: zeroc-ice 10:24:10 Successfully installed zeroc-ice-3.6.5 10:24:11 + pip install -U pip future 10:24:11 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 10:24:11 Collecting pip 10:24:11 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 10:24:12 Collecting future 10:24:12 Using cached future-1.0.0-py3-none-any.whl (491 kB) 10:24:12 Installing collected packages: pip, future 10:24:12 Attempting uninstall: pip 10:24:12 Found existing installation: pip 21.2.3 10:24:12 Uninstalling pip-21.2.3: 10:24:12 Successfully uninstalled pip-21.2.3 10:24:15 Successfully installed future-1.0.0 pip-24.0 10:24:15 + pip install markdown 10:24:16 Collecting markdown 10:24:16 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 10:24:16 Collecting importlib-metadata>=4.4 (from markdown) 10:24:16 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 10:24:16 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 10:24:16 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 10:24:16 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 10:24:16 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 10:24:16 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 10:24:16 Installing collected packages: zipp, importlib-metadata, markdown 10:24:17 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 10:24:17 + pip install reportlab 10:24:19 Collecting reportlab 10:24:19 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB) 10:24:19 Collecting pillow>=9.0.0 (from reportlab) 10:24:19 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 10:24:20 Collecting chardet (from reportlab) 10:24:20 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 10:24:20 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB) 10:24:20 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 10:24:20 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 10:24:20 Installing collected packages: pillow, chardet, reportlab 10:24:22 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.1.0 10:24:23 + pip install omego 10:24:24 Collecting omego 10:24:24 Using cached omego-0.7.0-py3-none-any.whl 10:24:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 10:24:24 Collecting yaclifw>=0.1.1 (from omego) 10:24:24 Using cached yaclifw-0.2.0-py3-none-any.whl 10:24:24 Collecting six (from yaclifw>=0.1.1->omego) 10:24:24 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 10:24:24 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 10:24:24 Installing collected packages: six, yaclifw, omego 10:24:24 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 10:24:24 + pip install tables 10:24:25 Collecting tables 10:24:25 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 10:24:25 Collecting numpy>=1.19.0 (from tables) 10:24:25 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 10:24:25 Collecting numexpr>=2.6.2 (from tables) 10:24:25 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 10:24:26 Collecting packaging (from tables) 10:24:26 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 10:24:26 Collecting py-cpuinfo (from tables) 10:24:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 10:24:26 Collecting blosc2>=2.3.0 (from tables) 10:24:26 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 10:24:26 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 10:24:26 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 10:24:26 Collecting msgpack (from blosc2>=2.3.0->tables) 10:24:26 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 10:24:26 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 10:24:26 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 10:24:26 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB) 10:24:26 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 10:24:26 Using cached packaging-24.0-py3-none-any.whl (53 kB) 10:24:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 10:24:26 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 10:24:26 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 10:24:27 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 10:24:30 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 10:24:30 + pip install jinja2 10:24:31 Collecting jinja2 10:24:31 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 10:24:31 Collecting MarkupSafe>=2.0 (from jinja2) 10:24:31 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 10:24:31 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 10:24:31 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 10:24:31 Installing collected packages: MarkupSafe, jinja2 10:24:31 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 10:24:32 + pip install omero-py 10:24:32 Collecting omero-py 10:24:32 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB) 10:24:32 Collecting urllib3<2 (from omero-py) 10:24:32 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 10:24:32 Collecting appdirs (from omero-py) 10:24:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 10:24:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 10:24:32 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 10:24:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0) 10:24:33 Collecting PyYAML (from omero-py) 10:24:33 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 10:24:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 10:24:33 Collecting requests (from omero-py) 10:24:33 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 10:24:33 Collecting portalocker (from omero-py) 10:24:33 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 10:24:33 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 10:24:33 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 10:24:33 Collecting idna<4,>=2.5 (from requests->omero-py) 10:24:33 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 10:24:33 Collecting certifi>=2017.4.17 (from requests->omero-py) 10:24:33 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 10:24:33 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB) 10:24:33 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 10:24:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:24:33 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 10:24:33 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 10:24:33 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 10:24:33 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 10:24:33 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 10:24:33 Using cached idna-3.6-py3-none-any.whl (61 kB) 10:24:34 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 10:24:36 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 10:24:36 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 10:24:37 Collecting omero-metadata 10:24:37 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-3rw2m72i/omero-metadata_cb63217eaafe481fbf2cef0dc81bbd41 10:24:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-3rw2m72i/omero-metadata_cb63217eaafe481fbf2cef0dc81bbd41 10:24:39 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f6c2bc1e5d51a24509b3ac4d7f468ebc63f32321 10:24:39 Installing build dependencies: started 10:24:41 Installing build dependencies: finished with status 'done' 10:24:41 Getting requirements to build wheel: started 10:24:41 Getting requirements to build wheel: finished with status 'done' 10:24:41 Installing backend dependencies: started 10:24:42 Installing backend dependencies: finished with status 'done' 10:24:42 Preparing metadata (pyproject.toml): started 10:24:42 Preparing metadata (pyproject.toml): finished with status 'done' 10:24:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.1) 10:24:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 10:24:42 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 10:24:43 Collecting pandas (from omero-metadata) 10:24:43 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 10:24:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 10:24:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 10:24:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 10:24:43 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 10:24:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0) 10:24:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 10:24:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 10:24:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 10:24:43 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 10:24:43 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 10:24:43 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 10:24:43 Collecting pytz>=2020.1 (from pandas->omero-metadata) 10:24:43 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 10:24:43 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 10:24:43 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 10:24:43 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 10:24:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 10:24:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6) 10:24:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 10:24:43 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) 10:24:43 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 10:24:43 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 10:24:43 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 10:24:44 Building wheels for collected packages: omero-metadata 10:24:44 Building wheel for omero-metadata (pyproject.toml): started 10:24:44 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 10:24:44 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=4132662eb87daa6079070752c73f45357c704d845880af1f283cc0b77be0af1f 10:24:44 Stored in directory: /tmp/pip-ephem-wheel-cache-rndmzdc4/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 10:24:44 Successfully built omero-metadata 10:24:44 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 10:24:50 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 10:24:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 10:24:50 Collecting omero-cli-render 10:24:50 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-4empfbb6/omero-cli-render_fcbedb16f83f4db9bdf4a34a60f715a1 10:24:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-4empfbb6/omero-cli-render_fcbedb16f83f4db9bdf4a34a60f715a1 10:24:51 Running command git checkout -b merge_ci --track origin/merge_ci 10:24:52 Switched to a new branch 'merge_ci' 10:24:52 branch 'merge_ci' set up to track 'origin/merge_ci'. 10:24:52 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bc5a507e044a05f575515a9c283966af9aae0ead 10:24:52 Installing build dependencies: started 10:24:54 Installing build dependencies: finished with status 'done' 10:24:54 Getting requirements to build wheel: started 10:24:54 Getting requirements to build wheel: finished with status 'done' 10:24:54 Installing backend dependencies: started 10:24:55 Installing backend dependencies: finished with status 'done' 10:24:55 Preparing metadata (pyproject.toml): started 10:24:55 Preparing metadata (pyproject.toml): finished with status 'done' 10:24:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 10:24:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.1) 10:24:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 10:24:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 10:24:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 10:24:55 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 10:24:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0) 10:24:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 10:24:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 10:24:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 10:24:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 10:24:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6) 10:24:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 10:24:55 Building wheels for collected packages: omero-cli-render 10:24:55 Building wheel for omero-cli-render (pyproject.toml): started 10:24:56 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 10:24:56 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=644e7d88892a0542144fb8079be5297e1d3bf14d0059995f392dbdce3aa88fdb 10:24:56 Stored in directory: /tmp/pip-ephem-wheel-cache-5p8bikok/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 10:24:56 Successfully built omero-cli-render 10:24:56 Installing collected packages: omero-cli-render 10:24:56 Successfully installed omero-cli-render-0.8.1.dev0 10:24:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 10:24:56 Collecting omero-cli-duplicate 10:24:56 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-phj4w432/omero-cli-duplicate_fc541bd67d6b4a28b37f2e551a5a032b 10:24:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-phj4w432/omero-cli-duplicate_fc541bd67d6b4a28b37f2e551a5a032b 10:24:57 Running command git checkout -b merge_ci --track origin/merge_ci 10:24:58 Switched to a new branch 'merge_ci' 10:24:58 branch 'merge_ci' set up to track 'origin/merge_ci'. 10:24:58 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1315c4317be204c39b9faf0b2b83125372e161bf 10:24:58 Installing build dependencies: started 10:25:00 Installing build dependencies: finished with status 'done' 10:25:00 Getting requirements to build wheel: started 10:25:00 Getting requirements to build wheel: finished with status 'done' 10:25:00 Installing backend dependencies: started 10:25:01 Installing backend dependencies: finished with status 'done' 10:25:01 Preparing metadata (pyproject.toml): started 10:25:02 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:02 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.1) 10:25:02 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 10:25:02 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 10:25:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 10:25:02 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 10:25:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0) 10:25:02 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 10:25:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 10:25:02 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 10:25:02 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 10:25:02 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 10:25:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6) 10:25:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 10:25:02 Building wheels for collected packages: omero-cli-duplicate 10:25:02 Building wheel for omero-cli-duplicate (pyproject.toml): started 10:25:02 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 10:25:02 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=f6a95caefc355683167fd0e50cde6f572ce9b63680288d628e1496e0b1c62bc8 10:25:02 Stored in directory: /tmp/pip-ephem-wheel-cache-wel6gzzh/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 10:25:02 Successfully built omero-cli-duplicate 10:25:02 Installing collected packages: omero-cli-duplicate 10:25:02 Successfully installed omero-cli-duplicate-0.4.1.dev0 10:25:02 + pip install omero-certificates 10:25:03 Collecting omero-certificates 10:25:03 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 10:25:03 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.1) 10:25:03 Collecting distro==1.8.0 (from omero-certificates) 10:25:03 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 10:25:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 10:25:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 10:25:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 10:25:03 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 10:25:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0) 10:25:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 10:25:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 10:25:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 10:25:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 10:25:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 10:25:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6) 10:25:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 10:25:03 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 10:25:03 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 10:25:03 Installing collected packages: distro, omero-certificates 10:25:03 Successfully installed distro-1.8.0 omero-certificates-0.3.2 10:25:04 + for x in *.tar.gz 10:25:04 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz 10:25:04 Processing ./omero-dropbox-5.6.3.dev0.tar.gz 10:25:04 Installing build dependencies: started 10:25:07 Installing build dependencies: finished with status 'done' 10:25:07 Getting requirements to build wheel: started 10:25:07 Getting requirements to build wheel: finished with status 'done' 10:25:07 Installing backend dependencies: started 10:25:08 Installing backend dependencies: finished with status 'done' 10:25:08 Preparing metadata (pyproject.toml): started 10:25:08 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:08 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.1) 10:25:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 10:25:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 10:25:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 10:25:08 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 10:25:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0) 10:25:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 10:25:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 10:25:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 10:25:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 10:25:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 10:25:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6) 10:25:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 10:25:09 Building wheels for collected packages: omero-dropbox 10:25:09 Building wheel for omero-dropbox (pyproject.toml): started 10:25:09 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 10:25:09 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=45043897299d00936c5ffaa4ef2502f7f971ee7c834b6df3639d94387bef12e1 10:25:09 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1 10:25:09 Successfully built omero-dropbox 10:25:09 Installing collected packages: omero-dropbox 10:25:09 Successfully installed omero-dropbox-5.6.3.dev0 10:25:10 + for x in *.tar.gz 10:25:10 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 10:25:10 Processing ./omero_marshal-0.9.1.dev0.tar.gz 10:25:10 Installing build dependencies: started 10:25:12 Installing build dependencies: finished with status 'done' 10:25:12 Getting requirements to build wheel: started 10:25:13 Getting requirements to build wheel: finished with status 'done' 10:25:13 Installing backend dependencies: started 10:25:14 Installing backend dependencies: finished with status 'done' 10:25:14 Preparing metadata (pyproject.toml): started 10:25:14 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:14 Building wheels for collected packages: omero_marshal 10:25:14 Building wheel for omero_marshal (pyproject.toml): started 10:25:14 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 10:25:14 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=9206ffc9e29fa48251130edda0486c5c5b22386ce57d6ead7eb2cf7ff99bd312 10:25:14 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 10:25:14 Successfully built omero_marshal 10:25:14 Installing collected packages: omero_marshal 10:25:15 Successfully installed omero_marshal-0.9.1.dev0 10:25:15 + for x in *.tar.gz 10:25:15 + pip install -U omero-py-5.19.2.dev0.tar.gz 10:25:15 Processing ./omero-py-5.19.2.dev0.tar.gz 10:25:16 Installing build dependencies: started 10:25:17 Installing build dependencies: finished with status 'done' 10:25:17 Getting requirements to build wheel: started 10:25:18 Getting requirements to build wheel: finished with status 'done' 10:25:18 Installing backend dependencies: started 10:25:19 Installing backend dependencies: finished with status 'done' 10:25:19 Preparing metadata (pyproject.toml): started 10:25:19 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18) 10:25:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4) 10:25:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0) 10:25:19 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4) 10:25:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.3.0) 10:25:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1) 10:25:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5) 10:25:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0) 10:25:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2) 10:25:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2) 10:25:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6) 10:25:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2) 10:25:19 Building wheels for collected packages: omero-py 10:25:19 Building wheel for omero-py (pyproject.toml): started 10:25:21 Building wheel for omero-py (pyproject.toml): finished with status 'done' 10:25:21 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2781994 sha256=b0fafc5edb73256a4d98ccd5f67fb64631144673b94032edf981ca680a47b5aa 10:25:21 Stored in directory: /home/omero/.cache/pip/wheels/9c/89/be/2493ce5a19b07550997c567708af9d7056cfee1f4f39ac699d 10:25:21 Successfully built omero-py 10:25:21 Installing collected packages: omero-py 10:25:21 Attempting uninstall: omero-py 10:25:21 Found existing installation: omero-py 5.19.1 10:25:21 Uninstalling omero-py-5.19.1: 10:25:22 Successfully uninstalled omero-py-5.19.1 10:25:25 Successfully installed omero-py-5.19.2.dev0 10:25:25 + for x in *.tar.gz 10:25:25 + pip install -U omero-scripts-5.8.1.dev0.tar.gz 10:25:26 Processing ./omero-scripts-5.8.1.dev0.tar.gz 10:25:26 Installing build dependencies: started 10:25:28 Installing build dependencies: finished with status 'done' 10:25:28 Getting requirements to build wheel: started 10:25:29 Getting requirements to build wheel: finished with status 'done' 10:25:29 Installing backend dependencies: started 10:25:30 Installing backend dependencies: finished with status 'done' 10:25:30 Preparing metadata (pyproject.toml): started 10:25:30 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:30 Building wheels for collected packages: omero-scripts 10:25:30 Building wheel for omero-scripts (pyproject.toml): started 10:25:31 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 10:25:31 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=cc4381ecf39d3167f92af69ff6431b3a6d90de28da1c59557302eb71542763bd 10:25:31 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf 10:25:31 Successfully built omero-scripts 10:25:31 Installing collected packages: omero-scripts 10:25:31 Successfully installed omero-scripts-5.8.1.dev0 10:25:32 + for x in *.tar.gz 10:25:32 + pip install -U omero-web-5.25.1.dev0.tar.gz 10:25:32 Processing ./omero-web-5.25.1.dev0.tar.gz 10:25:33 Installing build dependencies: started 10:25:35 Installing build dependencies: finished with status 'done' 10:25:35 Getting requirements to build wheel: started 10:25:35 Getting requirements to build wheel: finished with status 'done' 10:25:35 Installing backend dependencies: started 10:25:37 Installing backend dependencies: finished with status 'done' 10:25:37 Preparing metadata (pyproject.toml): started 10:25:37 Preparing metadata (pyproject.toml): finished with status 'done' 10:25:37 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0) 10:25:38 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 10:25:38 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 10:25:38 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 10:25:38 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 10:25:38 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 10:25:38 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 10:25:38 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 10:25:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 10:25:38 Collecting django-csp (from omero-web==5.25.1.dev0) 10:25:38 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 10:25:38 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 10:25:38 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 10:25:38 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 10:25:38 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) 10:25:38 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 10:25:38 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0) 10:25:38 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 10:25:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 10:25:38 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 10:25:39 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 10:25:39 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 10:25:39 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 10:25:39 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) 10:25:39 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 10:25:39 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 10:25:39 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 10:25:39 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 10:25:39 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 10:25:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 10:25:39 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 10:25:39 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 10:25:39 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 10:25:39 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 10:25:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6) 10:25:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 10:25:39 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 10:25:39 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 10:25:39 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 10:25:39 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 10:25:39 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) 10:25:39 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 10:25:39 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 10:25:39 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 10:25:39 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) 10:25:39 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 10:25:40 Building wheels for collected packages: omero-web 10:25:40 Building wheel for omero-web (pyproject.toml): started 10:25:41 Building wheel for omero-web (pyproject.toml): finished with status 'done' 10:25:41 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=1c06086e471e40038dba89041f967651309816e89d720e42bb07476183b8c2e5 10:25:41 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a 10:25:41 Successfully built omero-web 10:25:42 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 10:25:45 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0 10:25:45 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 10:25:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 10:25:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 10:25:46 --2024-04-05 10:25:46-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 10:25:46 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ... 10:25:46 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 10:25:46 HTTP request sent, awaiting response... 200 OK 10:25:46 Length: 94614 (92K) [text/plain] 10:25:46 Saving to: ‘Figure_To_Pdf.py’ 10:25:46 10:25:46 0K .......... .......... .......... .......... .......... 54% 2.94M 0s 10:25:46 50K .......... .......... .......... .......... .. 100% 6.62M=0.02s 10:25:46 10:25:46 2024-04-05 10:25:46 (3.94 MB/s) - ‘Figure_To_Pdf.py’ saved [94614/94614] 10:25:46 10:25:46 + chmod 755 Figure_To_Pdf.py 10:25:47 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 10:25:47 + omero config set omero.db.name OMERO-server 10:25:49 + omero config set omero.db.host pg 10:25:52 + omero config set omero.db.user postgres 10:25:54 + omero config set omero.data.dir /home/omero/omero-server-data 10:25:57 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 10:25:59 + omero config set omero.db.poolsize 25 10:26:01 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 10:26:03 + omero config set omero.security.trustStorePassword changeit 10:26:05 + omero config set omero.mail.config true 10:26:07 + omero config set omero.mail.from qa@openmicroscopy.org.uk 10:26:09 + omero config set omero.mail.host smtp.dundee.ac.uk 10:26:11 + omero certificates 10:26:13 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 10:26:13 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 10:26:13 + '[' false = true ']' 10:26:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 10:26:13 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 10:26:13 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG dbcommand => upgrade 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG dbhost => localhost 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG dbname => OMERO-server 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG dbpass => omero 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG dbuser => omero 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG rootpass => omero 10:26:13 2024-04-05 10:26:13,891 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 10:26:13 2024-04-05 10:26:13,891 [omego.extern] INFO Executing : omero version 10:26:15 OMERO.py version: 10:26:15 OMERO.server version: 10:26:15 5.6.3-451-f92d3a915e-ice36 10:26:15 5.19.2.dev0 10:26:16 2024-04-05 10:26:16,086 [omego.extern] INFO Completed [2.195 s] 10:26:16 2024-04-05 10:26:16,087 [omego.extern] DEBUG Using omero CLI from omero 10:26:16 2024-04-05 10:26:16,087 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 10:26:16 2024-04-05 10:26:16,087 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:26:16 2024-04-05 10:26:16,088 [omego.extern] INFO Executing : omero config get --show-password 10:26:18 2024-04-05 10:26:18,199 [omego.extern] INFO Completed [2.111 s] 10:26:18 2024-04-05 10:26:18,199 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:26:18 2024-04-05 10:26:18,199 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 10:26:18 2024-04-05 10:26:18,344 [omego.extern] INFO Completed [0.144 s] 10:26:18 2024-04-05 10:26:18,344 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 10:26:18 2024-04-05 10:26:18,344 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 10:26:18 10:26:18 2024-04-05 10:26:18,344 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:26:18 2024-04-05 10:26:18,345 [omego.extern] INFO Executing : omero config get --show-password 10:26:20 2024-04-05 10:26:20,206 [omego.extern] INFO Completed [1.861 s] 10:26:20 2024-04-05 10:26:20,206 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:26:20 2024-04-05 10:26:20,207 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 10:26:20 2024-04-05 10:26:20,379 [omego.extern] INFO Completed [0.172 s] 10:26:20 2024-04-05 10:26:20,379 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n' 10:26:20 2024-04-05 10:26:20,379 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 10:26:20 2024-04-05 10:26:20,379 [omego.extern] INFO Running [current environment]: omero config get --show-password 10:26:20 2024-04-05 10:26:20,380 [omego.extern] INFO Executing : omero config get --show-password 10:26:22 2024-04-05 10:26:22,609 [omego.extern] INFO Completed [2.230 s] 10:26:22 2024-04-05 10:26:22,610 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 10:26:22 2024-04-05 10:26:22,610 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 10:26:22 2024-04-05 10:26:22,684 [omego.extern] INFO Completed [0.073 s] 10:26:22 2024-04-05 10:26:22,684 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 10:26:22 2024-04-05 10:26:22,685 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 10:26:22 2024-04-05 10:26:22,689 [ omego.db] INFO Database is already at OMERO5.4__0 10:26:22 + export LANG=en_US.UTF-8 10:26:22 + LANG=en_US.UTF-8 10:26:22 + export LANGUAGE=en_US:en 10:26:22 + LANGUAGE=en_US:en 10:26:22 + export LC_ALL=en_US.UTF-8 10:26:22 + LC_ALL=en_US.UTF-8 10:26:22 + BUILD_ID=DONT_KILL_ME 10:26:22 + omero admin start 10:26:41 No descriptor given. Using etc/grid/default.xml 10:27:06 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 10:27:06 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 10:27:06 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 10:27:06 Waiting on startup. Use CTRL-C to exit 10:27:07 + omero admin waitup 10:27:10 Waiting on startup. Use CTRL-C to exit 10:27:10 + omero admin diagnostics 10:27:12 10:27:12 ================================================================================ 10:27:12 OMERO Diagnostics (admin) 10:27:12 ================================================================================ 10:27:12 10:27:12 Commands: java -version 11.0.22 (/usr/bin/java) 10:27:12 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 10:27:12 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 10:27:12 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 10:27:12 Commands: psql --version 16.2 (/usr/bin/psql) 10:27:12 Commands: openssl version 3.0.71 (/usr/bin/openssl) 10:27:13 10:27:13 Component: OMERO.py 5.19.2.dev0 10:27:13 Component: OMERO.server 5.6.3-451-f92d3a915e-ice36 10:27:13 10:27:13 Server: icegridnode running 10:27:13 Server: Blitz-0 active (pid = 17741, enabled) 10:27:13 Server: DropBox active (pid = 17762, enabled) 10:27:13 Server: FileServer active (pid = 17770, enabled) 10:27:13 Server: Indexer-0 active (pid = 17771, enabled) 10:27:13 Server: MonitorServer active (pid = 17832, enabled) 10:27:13 Server: OMERO.Glacier2 active (pid = 17772, enabled) 10:27:13 Server: OMERO.IceStorm active (pid = 17788, enabled) 10:27:13 Server: PixelData-0 active (pid = 17792, enabled) 10:27:13 Server: Processor-0 activating (enabled) 10:27:13 Server: Tables-0 activating (enabled) 10:27:13 Server: TestDropBox inactive (enabled) 10:27:13 10:27:13 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 10:27:13 Log files: Blitz-0.log 25.3 KB errors=0 warnings=1 10:27:13 Log files: DropBox.log 1.2 KB 10:27:13 Log files: FileServer.log 114 B 10:27:13 Log files: Indexer-0.log 2.6 KB 10:27:13 Log files: MonitorServer.log 1.1 KB 10:27:13 Log files: PixelData-0.log 3.4 KB 10:27:13 Log files: Processor-0.log 592 B 10:27:13 Log files: Tables-0.log 841 B 10:27:13 Log files: TestDropBox.log n/a 10:27:13 Log files: master.err 2.1 KB 10:27:13 Log files: master.out 41.5 KB 10:27:13 Log files: Total size 0.08 MB 10:27:13 10:27:13 10:27:13 Environment:OMERO_HOME=(unset) 10:27:13 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 10:27:13 Environment:OMERO_NODE=(unset) 10:27:13 Environment:OMERO_MASTER=(unset) 10:27:13 Environment:OMERO_USERDIR=(unset) 10:27:13 Environment:OMERO_TMPDIR=(unset) 10:27:13 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:27:13 Environment:PYTHONPATH=(unset) 10:27:13 Environment:ICE_HOME=/opt/ice-3.6.5 10:27:13 Environment:LD_LIBRARY_PATH=(unset) 10:27:13 Environment:DYLD_LIBRARY_PATH=(unset) 10:27:13 10:27:13 OMERO SSL port:4064 10:27:13 OMERO TCP port:4063 10:27:13 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 10:27:13 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 10:27:13 10:27:13 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:27:13 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:27:13 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:27:13 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 10:27:13 10:27:13 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 5 April 2024 8a6ece88f8df8ddf0c6acfe9ba668e541a286a84 10:27:13 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 5 April 2024 8a6ece88f8df8ddf0c6acfe9ba668e541a286a84 10:27:13 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 5 April 2024 8a6ece88f8df8ddf0c6acfe9ba668e541a286a84 10:27:13 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 5 April 2024 1fc390bd77ba4088ad3b44aebd9ac6b86b3ec889 10:27:13 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 10:27:13 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 10:27:13 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 10:27:13 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 10:27:13 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 10:27:13 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 10:27:13 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 10:27:14 + deactivate 10:27:14 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 10:27:14 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:27:14 + export PATH 10:27:14 + unset _OLD_VIRTUAL_PATH 10:27:14 + '[' -n '' ']' 10:27:14 + '[' -n /bin/bash -o -n '' ']' 10:27:14 + hash -r 10:27:14 + '[' -n '' ']' 10:27:14 + unset VIRTUAL_ENV 10:27:14 + '[' '!' '' = nondestructive ']' 10:27:14 + unset -f deactivate 10:27:14 Finished: SUCCESS