09:42:30 Started by upstream project "Trigger" build number 42 09:42:30 originally caused by: 09:42:30 Started by user devspace 09:42:30 Running as SYSTEM 09:42:30 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 09:42:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17251174678007908867.sh 09:42:30 + source /home/settings.env 09:42:30 ++ OMERO_DB_HOST=pg 09:42:30 ++ OMERO_DB_USER=postgres 09:42:30 ++ OMERO_DB_PASS= 09:42:30 ++ OMERO_ROOT_PASS=omero 09:42:30 ++ OMERO_DATA_DIR=/OMERO 09:42:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:42:30 + OMERO_DB_NAME=OMERO-server 09:42:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 09:42:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:42:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:42:30 + OMERO_DATA_DIR=/home/omero/omero-server-data 09:42:30 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 09:42:30 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 09:42:30 ++ deactivate nondestructive 09:42:30 ++ '[' -n '' ']' 09:42:30 ++ '[' -n '' ']' 09:42:30 ++ hash -r 09:42:30 ++ '[' -n '' ']' 09:42:30 ++ unset VIRTUAL_ENV 09:42:30 ++ unset VIRTUAL_ENV_PROMPT 09:42:30 ++ '[' '!' nondestructive = nondestructive ']' 09:42:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 09:42:30 ++ export VIRTUAL_ENV 09:42:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:42:30 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:42:30 ++ export PATH 09:42:30 ++ '[' -n '' ']' 09:42:30 ++ '[' -z '' ']' 09:42:30 ++ _OLD_VIRTUAL_PS1= 09:42:30 ++ PS1='(.venv3) ' 09:42:30 ++ export PS1 09:42:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 09:42:30 ++ export VIRTUAL_ENV_PROMPT 09:42:30 ++ hash -r 09:42:30 + omero admin stop 09:42:37 Waiting on shutdown. Use CTRL-C to exit 09:42:37 .+ sleep 5 09:42:52 + deactivate 09:42:52 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 09:42:52 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:42:52 + export PATH 09:42:52 + unset _OLD_VIRTUAL_PATH 09:42:52 + '[' -n '' ']' 09:42:52 + hash -r 09:42:52 + '[' -n '' ']' 09:42:52 + unset VIRTUAL_ENV 09:42:52 + unset VIRTUAL_ENV_PROMPT 09:42:52 + '[' '!' '' = nondestructive ']' 09:42:52 + unset -f deactivate 09:42:52 + rm -rf /home/omero/workspace/OMERO-server/.venv3 09:44:24 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 09:44:43 + '[' false = true ']' 09:44:43 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 09:44:43 Skipping PURGE_DATA:CleanDbAndRepo 09:44:43 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 09:44:48 Copied 1 artifact from "OMERO-build" build number 31 09:44:48 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 27 09:44:48 Copied 2 artifacts from "OMERO-build-build" build number 39 09:44:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3399286407760195349.sh 09:44:48 + source /home/settings.env 09:44:48 ++ OMERO_DB_HOST=pg 09:44:48 ++ OMERO_DB_USER=postgres 09:44:48 ++ OMERO_DB_PASS= 09:44:48 ++ OMERO_ROOT_PASS=omero 09:44:48 ++ OMERO_DATA_DIR=/OMERO 09:44:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:44:48 + OMERO_DB_NAME=OMERO-server 09:44:48 + OMERO_DATA_DIR=/home/omero/omero-server-data 09:44:48 + mkdir -p /home/omero/omero-server-data 09:44:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 09:44:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:44:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:44:48 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 09:44:48 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 09:44:48 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 09:44:48 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 09:44:48 ++ ls OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:44:48 + ZIP=OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:44:48 + '[' '!' -z '' ']' 09:44:48 + DIST=OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31 09:44:48 + unzip OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:44:48 Archive: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/grid/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/profiles/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/error/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/janelia/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/matplotlib/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/ncsa_paledit/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/seaborn/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/wcif/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/analysis_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/annotation_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/export_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/figure_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/import_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/util_scripts/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/server/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/share/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/share/licenses/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/misc/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__1/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__10/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__11/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__2/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__3/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__4/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__5/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__6/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__7/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__8/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__9/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__4/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__5/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__6/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__7/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.1__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__1/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__2/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__3/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/var/ 09:44:48 creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/var/tmp/ 09:44:48 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/LICENSE.txt 09:44:48 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/backup.cfg 09:44:48 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/mail-senders.example 09:44:48 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/mail-server.example 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/build.properties 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/env.bat 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/env.sh 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/hibernate.properties 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/ice.config 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-cli.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-indexing-cli.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-indexing.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/mime.types 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/node1.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/node2.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/omero.properties 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/profiles/psql 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/rollover.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/Windows.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/error/maintainance.html 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/README 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/default.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/templates.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/windefault.xml 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/ice.config 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/internal.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/master.cfg 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/robot.template 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/testdropbox.config 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/history.rst 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/OMEZarrReader.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/accessors-smart.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/activation.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aggdesigner-algorithm.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aircompressor.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/antlr.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aopalliance.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/apiguardian-api.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/asm.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/avatica-core.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/avatica-metrics.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-core.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-kms.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-s3.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/base.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-anim.jar 09:44:49 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-awt-util.jar 09:44:49 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inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/misc/current.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/misc/enums.py 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__1/OMERO3__7.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__10/OMERO3A__9.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__11/OMERO3A__10.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__11/OMERO3A__5.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__2/OMERO3A__1.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__3/OMERO3A__2.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__3/OMERO3__5.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__4/OMERO3A__3.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__4/OMERO3__5.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__5/OMERO3A__4.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__6/OMERO3A__5.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__7/OMERO3A__6.sql 09:45:11 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__8/OMERO3A__6.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__9/OMERO3A__8.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__4/OMERO3__1.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__5/OMERO3__4.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__6/OMERO3__5.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__7/OMERO3__6.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.1__0/OMERO4__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4__0/OMERO3A__11.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/psql-footer.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/psql-header.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/schema.sql 09:45:12 inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/views.sql 09:45:12 + rm -f OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:45:12 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31 /home/omero/workspace/OMERO-server/OMERO.server 09:45:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 09:45:12 ++ deactivate nondestructive 09:45:12 ++ '[' -n '' ']' 09:45:12 ++ '[' -n '' ']' 09:45:12 ++ hash -r 09:45:12 ++ '[' -n '' ']' 09:45:12 ++ unset VIRTUAL_ENV 09:45:12 ++ unset VIRTUAL_ENV_PROMPT 09:45:12 ++ '[' '!' nondestructive = nondestructive ']' 09:45:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 09:45:12 ++ export VIRTUAL_ENV 09:45:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:45:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:45:12 ++ export PATH 09:45:12 ++ '[' -n '' ']' 09:45:12 ++ '[' -z '' ']' 09:45:12 ++ _OLD_VIRTUAL_PS1= 09:45:12 ++ PS1='(.venv3) ' 09:45:12 ++ export PS1 09:45:12 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 09:45:12 ++ export VIRTUAL_ENV_PROMPT 09:45:12 ++ hash -r 09:45:12 + pip install -U pip 09:45:13 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 09:45:13 Collecting pip 09:45:13 Using cached pip-26.2-py3-none-any.whl (1.8 MB) 09:45:14 Installing collected packages: pip 09:45:14 Attempting uninstall: pip 09:45:14 Found existing installation: pip 22.3.1 09:45:14 Uninstalling pip-22.3.1: 09:45:14 Successfully uninstalled pip-22.3.1 09:45:27 Successfully installed pip-26.2 09:45:28 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 09:45:29 Collecting zeroc-ice==3.6.5 09:45:29 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 09:45:32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.3 MB/s 0:00:02 09:45:32 Installing collected packages: zeroc-ice 09:45:44 Successfully installed zeroc-ice-3.6.5 09:45:44 + pip install markdown 09:45:45 Collecting markdown 09:45:45 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 09:45:45 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 09:45:45 Installing collected packages: markdown 09:45:46 Successfully installed markdown-3.10.3 09:45:46 + pip install reportlab 09:45:47 Collecting reportlab 09:45:47 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 09:45:47 Collecting pillow>=9.0.0 (from reportlab) 09:45:47 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 09:45:48 Collecting charset-normalizer (from reportlab) 09:45:48 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) 09:45:48 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 09:45:48 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 09:45:48 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 09:45:48 Installing collected packages: pillow, charset-normalizer, reportlab 09:45:57 09:45:57 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0 09:45:57 + pip install omego 09:45:58 Collecting omego 09:45:58 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 09:45:58 Collecting future (from omego) 09:45:58 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 09:45:58 Collecting yaclifw>=0.1.1 (from omego) 09:45:58 Using cached yaclifw-0.2.0-py3-none-any.whl 09:45:58 Collecting six (from yaclifw>=0.1.1->omego) 09:45:58 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 09:45:58 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 09:45:58 Using cached future-1.0.0-py3-none-any.whl (491 kB) 09:45:58 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 09:45:58 Installing collected packages: six, future, yaclifw, omego 09:46:03 09:46:03 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 09:46:03 + pip install tables 09:46:04 Collecting tables 09:46:04 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 09:46:04 Collecting numpy>=1.20.0 (from tables) 09:46:04 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 09:46:04 Collecting numexpr>=2.6.2 (from tables) 09:46:04 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 09:46:04 Collecting packaging (from tables) 09:46:04 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 09:46:04 Collecting py-cpuinfo (from tables) 09:46:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 09:46:05 Collecting blosc2>=2.3.0 (from tables) 09:46:05 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 09:46:05 Collecting ndindex (from blosc2>=2.3.0->tables) 09:46:05 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 09:46:05 Collecting msgpack (from blosc2>=2.3.0->tables) 09:46:05 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 09:46:05 Collecting pydantic (from blosc2>=2.3.0->tables) 09:46:05 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 09:46:05 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 09:46:05 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 09:46:05 Collecting rich (from blosc2>=2.3.0->tables) 09:46:05 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 09:46:05 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 09:46:05 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 09:46:05 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 09:46:05 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 09:46:05 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 09:46:05 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 09:46:05 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 09:46:05 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 09:46:05 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 09:46:05 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 09:46:06 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 09:46:06 Using cached h2-4.4.0-py3-none-any.whl.metadata (3.8 kB) 09:46:06 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 09:46:06 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 09:46:06 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 09:46:06 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 09:46:06 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 09:46:06 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 09:46:06 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 09:46:06 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 09:46:06 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 09:46:06 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 09:46:07 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 09:46:07 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 09:46:07 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 09:46:07 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB) 09:46:07 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 09:46:07 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 09:46:07 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 09:46:07 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) 09:46:07 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 09:46:07 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 09:46:07 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 09:46:07 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB) 09:46:07 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 09:46:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 09:46:07 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 09:46:07 Using cached h2-4.4.0-py3-none-any.whl (62 kB) 09:46:07 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 09:46:07 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 09:46:07 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 09:46:07 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 09:46:07 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 09:46:07 Using cached idna-3.18-py3-none-any.whl (65 kB) 09:46:07 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 09:46:07 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 09:46:07 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 09:46:07 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 09:46:07 Using cached packaging-26.2-py3-none-any.whl (100 kB) 09:46:07 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 09:46:07 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 09:46:07 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 09:46:07 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 09:46:07 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB) 09:46:07 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 09:46:07 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) 09:46:07 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 09:46:07 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 09:46:07 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 09:46:07 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 09:47:00 09:47:00 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.9.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0 09:47:00 + pip install jinja2 09:47:01 Collecting jinja2 09:47:01 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 09:47:01 Collecting MarkupSafe>=2.0 (from jinja2) 09:47:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 09:47:01 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 09:47:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 09:47:01 Installing collected packages: MarkupSafe, jinja2 09:47:02 09:47:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 09:47:02 + pip install omero-py 09:47:03 Collecting omero-py 09:47:03 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 09:47:03 Collecting appdirs (from omero-py) 09:47:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 09:47:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 09:47:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 09:47:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 09:47:03 Collecting PyYAML (from omero-py) 09:47:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 09:47:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 09:47:03 Collecting requests (from omero-py) 09:47:03 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 09:47:03 Collecting portalocker (from omero-py) 09:47:03 Using cached portalocker-4.0.0-py3-none-any.whl.metadata (10 kB) 09:47:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9) 09:47:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) 09:47:03 Collecting urllib3<3,>=1.26 (from requests->omero-py) 09:47:03 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 09:47:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 09:47:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 09:47:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 09:47:03 Using cached portalocker-4.0.0-py3-none-any.whl (33 kB) 09:47:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 09:47:03 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 09:47:03 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 09:47:04 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 09:47:20 09:47:21 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 urllib3-2.7.0 09:47:21 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 09:47:21 Collecting omero-metadata 09:47:21 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-mnfygoi7/omero-metadata_f6a3fcaf7aa449a7aa446c96b23ed76d 09:47:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-mnfygoi7/omero-metadata_f6a3fcaf7aa449a7aa446c96b23ed76d 09:47:25 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2f873ee5e99ccb4cf22a6a42896759f589caee66 09:47:25 Installing build dependencies: started 09:47:26 Installing build dependencies: finished with status 'done' 09:47:26 Getting requirements to build wheel: started 09:47:27 Getting requirements to build wheel: finished with status 'done' 09:47:27 Preparing metadata (pyproject.toml): started 09:47:27 Preparing metadata (pyproject.toml): finished with status 'done' 09:47:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 09:47:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 09:47:27 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 09:47:27 Collecting pandas (from omero-metadata) 09:47:27 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 09:47:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 09:47:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 09:47:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6) 09:47:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 09:47:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 09:47:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 09:47:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.0.0) 09:47:27 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 09:47:27 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 09:47:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 09:47:27 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 09:47:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9) 09:47:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) 09:47:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 09:47:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 09:47:27 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) 09:47:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 09:47:27 Building wheels for collected packages: omero-metadata 09:47:27 Building wheel for omero-metadata (pyproject.toml): started 09:47:28 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 09:47:28 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=6b73cef163291c9d8262a0dbc73bb64fc4b238b49ed5a32c4a47eb6d52990c71 09:47:28 Stored in directory: /tmp/pip-ephem-wheel-cache-dde9ucon/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 09:47:28 Successfully built omero-metadata 09:47:28 Installing collected packages: python-dateutil, pandas, omero-metadata 09:48:07 09:48:07 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0 09:48:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 09:48:08 Collecting omero-cli-render 09:48:08 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-q_uztnx3/omero-cli-render_c161b751b9474443bef120f2da4e0126 09:48:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-q_uztnx3/omero-cli-render_c161b751b9474443bef120f2da4e0126 09:48:09 Running command git checkout -b merge_ci --track origin/merge_ci 09:48:09 Switched to a new branch 'merge_ci' 09:48:09 branch 'merge_ci' set up to track 'origin/merge_ci'. 09:48:09 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 044f1bfb7352954f33e1c0b1ec4c9a510e88089e 09:48:09 Installing build dependencies: started 09:48:10 Installing build dependencies: finished with status 'done' 09:48:10 Getting requirements to build wheel: started 09:48:11 Getting requirements to build wheel: finished with status 'done' 09:48:11 Preparing metadata (pyproject.toml): started 09:48:11 Preparing metadata (pyproject.toml): finished with status 'done' 09:48:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 09:48:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 09:48:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 09:48:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 09:48:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 09:48:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 09:48:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 09:48:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 09:48:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.0.0) 09:48:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9) 09:48:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) 09:48:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 09:48:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 09:48:11 Building wheels for collected packages: omero-cli-render 09:48:11 Building wheel for omero-cli-render (pyproject.toml): started 09:48:11 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 09:48:11 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=7779d4125aaad79c73b89ebb6bf35e4c9b2ea5c6cd9cfdec62753fc46e1de2a8 09:48:11 Stored in directory: /tmp/pip-ephem-wheel-cache-l_3d0gfr/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 09:48:11 Successfully built omero-cli-render 09:48:11 Installing collected packages: omero-cli-render 09:48:12 Successfully installed omero-cli-render-0.8.2.dev0 09:48:12 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 09:48:13 Collecting omero-cli-duplicate 09:48:13 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-w0p9sy1c/omero-cli-duplicate_ad341f419c004d2caa558eb0f8ae9431 09:48:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-w0p9sy1c/omero-cli-duplicate_ad341f419c004d2caa558eb0f8ae9431 09:48:14 Running command git checkout -b merge_ci --track origin/merge_ci 09:48:14 Switched to a new branch 'merge_ci' 09:48:14 branch 'merge_ci' set up to track 'origin/merge_ci'. 09:48:14 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 2ec37301fcf4d6956c52af82bddcb12302f091bb 09:48:14 Installing build dependencies: started 09:48:15 Installing build dependencies: finished with status 'done' 09:48:15 Getting requirements to build wheel: started 09:48:15 Getting requirements to build wheel: finished with status 'done' 09:48:15 Preparing metadata (pyproject.toml): started 09:48:16 Preparing metadata (pyproject.toml): finished with status 'done' 09:48:16 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 09:48:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 09:48:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 09:48:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 09:48:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 09:48:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 09:48:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 09:48:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 09:48:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.0.0) 09:48:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9) 09:48:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 09:48:16 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 09:48:16 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 09:48:16 Building wheels for collected packages: omero-cli-duplicate 09:48:16 Building wheel for omero-cli-duplicate (pyproject.toml): started 09:48:16 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 09:48:16 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=71e4a617cfebc34ade7bede85a88e407e71c6ae9d22317f58493bd82dc170b56 09:48:16 Stored in directory: /tmp/pip-ephem-wheel-cache-f48yokaw/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 09:48:16 Successfully built omero-cli-duplicate 09:48:16 Installing collected packages: omero-cli-duplicate 09:48:16 Successfully installed omero-cli-duplicate-0.4.1.dev0 09:48:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 09:48:17 Collecting omero-cli-zarr 09:48:17 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-y2w5lp__/omero-cli-zarr_bc067729fd074073817522d4357fce86 09:48:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-y2w5lp__/omero-cli-zarr_bc067729fd074073817522d4357fce86 09:48:18 Running command git checkout -b merge_ci --track origin/merge_ci 09:48:18 Switched to a new branch 'merge_ci' 09:48:18 branch 'merge_ci' set up to track 'origin/merge_ci'. 09:48:18 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 8bf746e92a2a93308a7f400d216c4d7e876524ca 09:48:18 Installing build dependencies: started 09:48:19 Installing build dependencies: finished with status 'done' 09:48:19 Getting requirements to build wheel: started 09:48:20 Getting requirements to build wheel: finished with status 'done' 09:48:20 Installing backend dependencies: started 09:48:21 Installing backend dependencies: finished with status 'done' 09:48:21 Preparing metadata (pyproject.toml): started 09:48:21 Preparing metadata (pyproject.toml): finished with status 'done' 09:48:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 09:48:22 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 09:48:22 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 09:48:22 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 09:48:22 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:22 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) 09:48:22 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:22 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 09:48:22 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:22 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 09:48:23 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 09:48:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 09:48:23 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 09:48:23 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 09:48:23 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 09:48:23 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) 09:48:23 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 09:48:23 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) 09:48:23 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 09:48:23 Requirement already 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importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) 09:48:23 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:23 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) 09:48:24 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:24 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) 09:48:24 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0) 09:48:24 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:24 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 09:48:24 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satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.0.0) 09:48:24 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:24 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) 09:48:24 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:24 Using cached aiobotocore-3.9.0-py3-none-any.whl.metadata (30 kB) 09:48:25 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:25 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 09:48:25 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:25 Using cached 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lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) 09:48:27 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:27 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 09:48:27 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:27 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 09:48:27 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 09:48:27 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 09:48:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9) 09:48:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 09:48:27 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 09:48:27 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) 09:48:27 Using cached click-8.4.2-py3-none-any.whl (119 kB) 09:48:27 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 09:48:27 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB) 09:48:27 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 09:48:27 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 09:48:27 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 09:48:27 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 09:48:27 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 09:48:27 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 09:48:27 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 09:48:27 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 09:48:27 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 09:48:27 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 09:48:27 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 09:48:27 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 09:48:27 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 09:48:27 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 09:48:27 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 09:48:27 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 09:48:27 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 09:48:27 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 09:48:28 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 09:48:28 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 09:48:28 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 09:48:28 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 09:48:28 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 09:48:28 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 09:48:28 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 09:48:28 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 09:48:28 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 09:48:28 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 09:48:28 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 09:48:28 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 09:48:28 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 09:48:28 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 09:48:28 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 09:48:28 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 09:48:28 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 09:48:28 Building wheels for collected packages: omero-cli-zarr 09:48:28 Building wheel for omero-cli-zarr (pyproject.toml): started 09:48:28 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 09:48:28 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g8bf746e-py3-none-any.whl size=38402 sha256=abb36744db0d9acf10de09f3def189e7c8b5f404afbe226a4a071f92f7f7710e 09:48:28 Stored in directory: /tmp/pip-ephem-wheel-cache-3wltyox2/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 09:48:28 Successfully built omero-cli-zarr 09:48:29 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 09:49:02 Attempting uninstall: pydantic-core 09:49:07 Found existing installation: pydantic_core 2.46.4 09:49:07 Uninstalling pydantic_core-2.46.4: 09:49:07 Successfully uninstalled pydantic_core-2.46.4 09:49:46 Attempting uninstall: pydantic 09:49:46 Found existing installation: pydantic 2.13.4 09:49:47 Uninstalling pydantic-2.13.4: 09:49:47 Successfully uninstalled pydantic-2.13.4 09:50:22 09:50:22 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g8bf746e partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 09:50:22 + pip install omero-certificates 09:50:23 Collecting omero-certificates 09:50:23 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 09:50:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 09:50:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 09:50:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 09:50:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 09:50:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 09:50:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 09:50:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 09:50:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 09:50:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.0.0) 09:50:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9) 09:50:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 09:50:23 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 09:50:23 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 09:50:23 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 09:50:23 Installing collected packages: omero-certificates 09:50:24 Successfully installed omero-certificates-0.4.0 09:50:24 + for x in *.tar.gz 09:50:24 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 09:50:24 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 09:50:24 Installing build dependencies: started 09:50:26 Installing build dependencies: finished with status 'done' 09:50:26 Getting requirements to build wheel: started 09:50:26 Getting requirements to build wheel: finished with status 'done' 09:50:26 Preparing metadata (pyproject.toml): started 09:50:26 Preparing metadata (pyproject.toml): finished with status 'done' 09:50:26 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 09:50:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 09:50:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 09:50:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 09:50:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 09:50:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 09:50:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 09:50:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 09:50:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.0.0) 09:50:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9) 09:50:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 09:50:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 09:50:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 09:50:26 Building wheels for collected packages: omero-dropbox 09:50:26 Building wheel for omero-dropbox (pyproject.toml): started 09:50:26 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 09:50:26 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=33745353f8e665526623891e17364a583f96c9e372b00dbbacf9a491be22aa16 09:50:26 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 09:50:26 Successfully built omero-dropbox 09:50:27 Installing collected packages: omero-dropbox 09:50:27 Successfully installed omero-dropbox-5.7.1.dev0 09:50:27 + for x in *.tar.gz 09:50:27 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 09:50:28 Processing ./omero_marshal-0.9.2.dev0.tar.gz 09:50:28 Installing build dependencies: started 09:50:29 Installing build dependencies: finished with status 'done' 09:50:29 Getting requirements to build wheel: started 09:50:29 Getting requirements to build wheel: finished with status 'done' 09:50:29 Preparing metadata (pyproject.toml): started 09:50:30 Preparing metadata (pyproject.toml): finished with status 'done' 09:50:30 Building wheels for collected packages: omero_marshal 09:50:30 Building wheel for omero_marshal (pyproject.toml): started 09:50:30 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 09:50:30 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=59e34ed66df4f068dd15c074a34130833d9d05b98ddac161fbdc77f991e4a5a8 09:50:30 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 09:50:30 Successfully built omero_marshal 09:50:30 Installing collected packages: omero_marshal 09:50:32 Successfully installed omero_marshal-0.9.2.dev0 09:50:32 + for x in *.tar.gz 09:50:32 + pip install -U omero_py-5.23.1.dev0.tar.gz 09:50:33 Processing ./omero_py-5.23.1.dev0.tar.gz 09:50:33 Installing build dependencies: started 09:50:34 Installing build dependencies: finished with status 'done' 09:50:34 Getting requirements to build wheel: started 09:50:35 Getting requirements to build wheel: finished with status 'done' 09:50:35 Preparing metadata (pyproject.toml): started 09:50:35 Preparing metadata (pyproject.toml): finished with status 'done' 09:50:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 09:50:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 09:50:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 09:50:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 09:50:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 09:50:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 09:50:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 09:50:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.0.0) 09:50:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9) 09:50:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18) 09:50:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 09:50:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 09:50:35 Building wheels for collected packages: omero-py 09:50:35 Building wheel for omero-py (pyproject.toml): started 09:50:36 Building wheel for omero-py (pyproject.toml): finished with status 'done' 09:50:36 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786922 sha256=5165a52ae9760ccba967c99f577ebca194500c69585a090c13eda6f3b14f8c62 09:50:36 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 09:50:36 Successfully built omero-py 09:50:37 Installing collected packages: omero-py 09:50:37 Attempting uninstall: omero-py 09:50:37 Found existing installation: omero-py 5.23.0 09:50:37 Uninstalling omero-py-5.23.0: 09:50:48 Successfully uninstalled omero-py-5.23.0 09:51:03 Successfully installed omero-py-5.23.1.dev0 09:51:03 + for x in *.tar.gz 09:51:03 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 09:51:04 Processing ./omero_scripts-5.10.1.dev0.tar.gz 09:51:04 Installing build dependencies: started 09:51:05 Installing build dependencies: finished with status 'done' 09:51:05 Getting requirements to build wheel: started 09:51:05 Getting requirements to build wheel: finished with status 'done' 09:51:05 Preparing metadata (pyproject.toml): started 09:51:05 Preparing metadata (pyproject.toml): finished with status 'done' 09:51:05 Building wheels for collected packages: omero-scripts 09:51:05 Building wheel for omero-scripts (pyproject.toml): started 09:51:06 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 09:51:06 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=79662f8cb5acb3ebb830bc51fd60043fc131ab7e36e404bcd70a6660e4b26749 09:51:06 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 09:51:06 Successfully built omero-scripts 09:51:06 Installing collected packages: omero-scripts 09:51:07 Successfully installed omero-scripts-5.10.1.dev0 09:51:07 + for x in *.tar.gz 09:51:07 + pip install -U omero_web-5.32.1.dev0.tar.gz 09:51:07 Processing ./omero_web-5.32.1.dev0.tar.gz 09:51:08 Installing build dependencies: started 09:51:09 Installing build dependencies: finished with status 'done' 09:51:09 Getting requirements to build wheel: started 09:51:09 Getting requirements to build wheel: finished with status 'done' 09:51:09 Preparing metadata (pyproject.toml): started 09:51:09 Preparing metadata (pyproject.toml): finished with status 'done' 09:51:09 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 09:51:10 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 09:51:10 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 09:51:10 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 09:51:10 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB) 09:51:10 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 09:51:10 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 09:51:10 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 09:51:10 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 09:51:10 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 09:51:10 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 09:51:10 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 09:51:10 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) 09:51:10 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 09:51:10 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 09:51:10 Collecting pytz (from omero-web==5.32.1.dev0) 09:51:10 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 09:51:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.0.0) 09:51:10 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2) 09:51:10 Collecting importlib-resources (from omero-web==5.32.1.dev0) 09:51:10 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 09:51:10 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 09:51:10 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 09:51:10 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 09:51:10 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 09:51:10 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 09:51:10 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 09:51:10 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 09:51:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 09:51:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 09:51:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 09:51:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 09:51:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 09:51:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 09:51:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9) 09:51:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 09:51:10 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 09:51:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 09:51:10 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 09:51:10 Using cached django-5.2.16-py3-none-any.whl (8.3 MB) 09:51:10 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 09:51:10 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 09:51:10 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 09:51:10 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) 09:51:10 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 09:51:10 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 09:51:10 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 09:51:10 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 09:51:10 Using cached wheel-0.47.0-py3-none-any.whl (32 kB) 09:51:11 Building wheels for collected packages: omero-web 09:51:11 Building wheel for omero-web (pyproject.toml): started 09:51:12 Building wheel for omero-web (pyproject.toml): finished with status 'done' 09:51:12 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820229 sha256=2e9c126df114332e88c16a90d99ac8afc0b7bfbf74130c58e1e08d201942d106 09:51:12 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 09:51:12 Successfully built omero-web 09:51:12 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 09:52:13 09:52:13 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 09:52:13 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 09:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 09:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 09:52:13 --2026-08-02 09:52:13-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 09:52:13 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ... 09:52:13 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 09:52:13 HTTP request sent, awaiting response... 200 OK 09:52:13 Length: 139337 (136K) [text/plain] 09:52:13 Saving to: ‘Figure_To_Pdf.py’ 09:52:13 09:52:13 0K .......... .......... .......... .......... .......... 36% 2.78M 0s 09:52:13 50K .......... .......... .......... .......... .......... 73% 4.90M 0s 09:52:13 100K .......... .......... .......... ...... 100% 7.32M=0.03s 09:52:13 09:52:13 2026-08-02 09:52:13 (4.11 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] 09:52:13 09:52:13 + chmod 755 Figure_To_Pdf.py 09:52:13 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 09:52:13 + omero config set omero.db.name OMERO-server 09:52:20 + omero config set omero.db.host pg 09:52:24 + omero config set omero.db.user postgres 09:52:29 + omero config set omero.data.dir /home/omero/omero-server-data 09:52:34 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 09:52:38 + omero config set omero.db.poolsize 25 09:52:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 09:52:48 + omero config set omero.security.trustStorePassword changeit 09:52:52 + omero config set omero.mail.config true 09:52:57 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 09:53:01 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 09:53:06 + omero certificates 09:53:10 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 09:53:10 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 09:53:10 + '[' false = true ']' 09:53:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 09:53:10 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 09:53:10 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG dbcommand => upgrade 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG dbhost => localhost 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG dbname => OMERO-server 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG dbpass => omero 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG dbuser => omero 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG rootpass => omero 09:53:10 2026-08-02 09:53:10,987 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 09:53:10 2026-08-02 09:53:10,988 [omego.extern] INFO Executing : omero version 09:53:15 OMERO.py version: 09:53:15 OMERO.server version: 09:53:15 5.6.3-622-9dcf70e17e-ice36-b31 09:53:15 5.23.1.dev0 09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO Completed [4.571 s] 09:53:15 2026-08-02 09:53:15,559 [omego.extern] DEBUG Using omero CLI from omero 09:53:15 2026-08-02 09:53:15,559 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO Executing : omero config get --show-password 09:53:20 2026-08-02 09:53:20,172 [omego.extern] INFO Completed [4.613 s] 09:53:20 2026-08-02 09:53:20,172 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:53:20 2026-08-02 09:53:20,173 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 09:53:20 2026-08-02 09:53:20,178 [omego.extern] INFO Completed [0.006 s] 09:53:20 2026-08-02 09:53:20,178 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 09:53:20 2026-08-02 09:53:20,179 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 09:53:20 09:53:20 2026-08-02 09:53:20,179 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:53:20 2026-08-02 09:53:20,179 [omego.extern] INFO Executing : omero config get --show-password 09:53:24 2026-08-02 09:53:24,779 [omego.extern] INFO Completed [4.601 s] 09:53:24 2026-08-02 09:53:24,779 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:53:24 2026-08-02 09:53:24,780 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO Completed [0.015 s] 09:53:24 2026-08-02 09:53:24,795 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 09:53:24 2026-08-02 09:53:24,795 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO Running [current environment]: omero config get --show-password 09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO Executing : omero config get --show-password 09:53:29 2026-08-02 09:53:29,119 [omego.extern] INFO Completed [4.324 s] 09:53:29 2026-08-02 09:53:29,119 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 09:53:29 2026-08-02 09:53:29,119 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 09:53:29 2026-08-02 09:53:29,140 [omego.extern] INFO Completed [0.021 s] 09:53:29 2026-08-02 09:53:29,140 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 09:53:29 2026-08-02 09:53:29,140 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 09:53:29 2026-08-02 09:53:29,180 [ omego.db] INFO Database is already at OMERO5.4__0 09:53:29 + export LANG=en_US.UTF-8 09:53:29 + LANG=en_US.UTF-8 09:53:29 + export LANGUAGE=en_US:en 09:53:29 + LANGUAGE=en_US:en 09:53:29 + export LC_ALL=en_US.UTF-8 09:53:29 + LC_ALL=en_US.UTF-8 09:53:29 + BUILD_ID=DONT_KILL_ME 09:53:29 + omero admin start 09:53:39 No descriptor given. Using etc/grid/default.xml 09:53:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 09:53:55 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 09:53:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 09:53:55 Waiting on startup. Use CTRL-C to exit 09:53:55 + omero admin waitup 09:54:00 Waiting on startup. Use CTRL-C to exit 09:54:00 + omero admin diagnostics 09:54:05 09:54:05 ================================================================================ 09:54:05 OMERO Diagnostics (admin) 09:54:05 ================================================================================ 09:54:05 09:54:05 Commands: java -version 21.0.12 (/usr/bin/java) 09:54:05 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 09:54:05 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 09:54:05 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 09:54:05 Commands: psql --version 16.14 (/usr/bin/psql) 09:54:05 Commands: openssl version 3.5.527 (/usr/bin/openssl) 09:54:05 09:54:05 Component: OMERO.py 5.23.1.dev0 09:54:05 Component: OMERO.server 5.6.3-622-9dcf70e17e-ice36-b31 09:54:05 09:54:05 Server: icegridnode running 09:54:05 Server: Blitz-0 active (pid = 29019, enabled) 09:54:05 Server: Indexer-0 active (pid = 29062, enabled) 09:54:05 Server: OMERO.Glacier2 active (pid = 29039, enabled) 09:54:05 Server: OMERO.IceStorm active (pid = 29044, enabled) 09:54:05 Server: Processor-0 active (pid = 29082, enabled) 09:54:05 Server: Tables-0 active (pid = 29064, enabled) 09:54:05 09:54:05 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 09:54:05 Log files: Blitz-0.log 32.2 KB errors=0 warnings=1 09:54:05 Log files: DropBox.log n/a 09:54:05 Log files: FileServer.log n/a 09:54:05 Log files: Indexer-0.log 2.6 KB 09:54:05 Log files: MonitorServer.log n/a 09:54:05 Log files: Processor-0.log 735 B 09:54:05 Log files: Tables-0.log 961 B 09:54:05 Log files: TestDropBox.log n/a 09:54:05 Log files: master.err empty 09:54:05 Log files: master.out 30.5 KB 09:54:05 Log files: Total size 0.07 MB 09:54:05 09:54:05 09:54:05 Environment:OMERO_HOME=(unset) 09:54:05 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 09:54:05 Environment:OMERO_NODE=(unset) 09:54:05 Environment:OMERO_MASTER=(unset) 09:54:05 Environment:OMERO_USERDIR=(unset) 09:54:05 Environment:OMERO_TMPDIR=(unset) 09:54:05 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:54:05 Environment:PYTHONPATH=(unset) 09:54:05 Environment:ICE_HOME=/opt/ice-3.6.5 09:54:05 Environment:LD_LIBRARY_PATH=(unset) 09:54:05 Environment:DYLD_LIBRARY_PATH=(unset) 09:54:05 09:54:05 OMERO SSL port:4064 09:54:05 OMERO TCP port:4063 09:54:05 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 09:54:05 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 09:54:05 09:54:05 JVM settings: Blitz-${index} -Xmx7200m 09:54:05 JVM settings: Indexer-${index} -Xmx4800m 09:54:05 JVM settings: PixelData-${index} -Xmx7200m 09:54:05 JVM settings: Repository-${index} -Xmx4800m 09:54:05 09:54:05 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 09:54:05 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 09:54:05 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 09:54:05 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 09:54:05 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 09:54:05 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 09:54:05 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 09:54:05 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 09:54:05 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 09:54:05 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 09:54:05 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 09:54:05 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 09:54:05 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 09:54:05 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 09:54:05 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 09:54:05 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 09:54:05 + deactivate 09:54:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 09:54:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:54:05 + export PATH 09:54:05 + unset _OLD_VIRTUAL_PATH 09:54:05 + '[' -n '' ']' 09:54:05 + hash -r 09:54:05 + '[' -n '' ']' 09:54:05 + unset VIRTUAL_ENV 09:54:05 + unset VIRTUAL_ENV_PROMPT 09:54:05 + '[' '!' '' = nondestructive ']' 09:54:05 + unset -f deactivate 09:54:06 Finished: SUCCESS