01:47:30 Started by upstream project "Trigger" build number 45 01:47:30 originally caused by: 01:47:30 Started by timer 01:47:30 Running as SYSTEM 01:47:30 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 01:47:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8073057980908099851.sh 01:47:30 + source /home/settings.env 01:47:30 ++ OMERO_DB_HOST=pg 01:47:30 ++ OMERO_DB_USER=postgres 01:47:30 ++ OMERO_DB_PASS= 01:47:30 ++ OMERO_ROOT_PASS=omero 01:47:30 ++ OMERO_DATA_DIR=/OMERO 01:47:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:47:30 + OMERO_DB_NAME=OMERO-server 01:47:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:47:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:47:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:47:30 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:47:30 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 01:47:30 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:47:30 ++ deactivate nondestructive 01:47:30 ++ '[' -n '' ']' 01:47:30 ++ '[' -n '' ']' 01:47:30 ++ hash -r 01:47:30 ++ '[' -n '' ']' 01:47:30 ++ unset VIRTUAL_ENV 01:47:30 ++ unset VIRTUAL_ENV_PROMPT 01:47:30 ++ '[' '!' nondestructive = nondestructive ']' 01:47:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:47:30 ++ export VIRTUAL_ENV 01:47:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:47:30 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:47:30 ++ export PATH 01:47:30 ++ '[' -n '' ']' 01:47:30 ++ '[' -z '' ']' 01:47:30 ++ _OLD_VIRTUAL_PS1= 01:47:30 ++ PS1='(.venv3) ' 01:47:30 ++ export PS1 01:47:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:47:30 ++ export VIRTUAL_ENV_PROMPT 01:47:30 ++ hash -r 01:47:30 + omero admin stop 01:48:03 Server not running 01:48:03 + echo not running 01:48:03 not running 01:48:03 + sleep 5 01:48:08 + deactivate 01:48:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 01:48:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:48:08 + export PATH 01:48:08 + unset _OLD_VIRTUAL_PATH 01:48:08 + '[' -n '' ']' 01:48:08 + hash -r 01:48:08 + '[' -n '' ']' 01:48:08 + unset VIRTUAL_ENV 01:48:08 + unset VIRTUAL_ENV_PROMPT 01:48:08 + '[' '!' '' = nondestructive ']' 01:48:08 + unset -f deactivate 01:48:08 + rm -rf /home/omero/workspace/OMERO-server/.venv3 01:50:58 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 01:51:18 + '[' false = true ']' 01:51:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 01:51:18 Skipping PURGE_DATA:CleanDbAndRepo 01:51:18 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 01:51:25 Copied 1 artifact from "OMERO-build" build number 36 01:51:26 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 30 01:51:26 Copied 2 artifacts from "OMERO-build-build" build number 42 01:51:26 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11161395841497051017.sh 01:51:26 + source /home/settings.env 01:51:26 ++ OMERO_DB_HOST=pg 01:51:26 ++ OMERO_DB_USER=postgres 01:51:26 ++ OMERO_DB_PASS= 01:51:26 ++ OMERO_ROOT_PASS=omero 01:51:26 ++ OMERO_DATA_DIR=/OMERO 01:51:26 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:51:26 + OMERO_DB_NAME=OMERO-server 01:51:26 + OMERO_DATA_DIR=/home/omero/omero-server-data 01:51:26 + mkdir -p /home/omero/omero-server-data 01:51:26 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 01:51:26 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:51:26 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 01:51:26 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:51:26 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 01:51:26 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:51:26 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 01:51:26 ++ ls OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip 01:51:26 + ZIP=OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip 01:51:26 + '[' '!' -z '' ']' 01:51:26 + DIST=OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36 01:51:26 + unzip OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip 01:51:26 Archive: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/grid/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/profiles/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/error/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/janelia/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/matplotlib/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/ncsa_paledit/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/seaborn/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/wcif/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/analysis_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/annotation_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/export_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/figure_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/import_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/util_scripts/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/server/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/share/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/share/licenses/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/misc/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__1/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__10/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__11/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__2/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__3/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__4/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__5/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__6/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__7/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__8/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__9/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__4/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__5/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__6/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__7/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.1__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__1/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__2/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__3/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/var/ 01:51:26 creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/var/tmp/ 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/LICENSE.txt 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/backup.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/mail-senders.example 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/mail-server.example 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/build.properties 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/env.bat 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/env.sh 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/hibernate.properties 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/ice.config 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-cli.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-indexing-cli.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-indexing.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/mime.types 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/node1.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/node2.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/omero.properties 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/profiles/psql 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/rollover.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/Windows.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/error/maintainance.html 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/README 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/default.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/templates.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/windefault.xml 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/ice.config 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/internal.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/master.cfg 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/robot.template 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/testdropbox.config 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/history.rst 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/OMEZarrReader.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/accessors-smart.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/activation.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aggdesigner-algorithm.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aircompressor.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/antlr.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aopalliance.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/apiguardian-api.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/asm.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/avatica-core.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/avatica-metrics.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-core.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-kms.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-s3.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/base.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-anim.jar 01:51:27 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-awt-util.jar 01:51:27 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inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/misc/current.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/misc/enums.py 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__1/OMERO3__7.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__10/OMERO3A__9.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__11/OMERO3A__10.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__11/OMERO3A__5.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__2/OMERO3A__1.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__3/OMERO3A__2.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__3/OMERO3__5.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__4/OMERO3A__3.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__4/OMERO3__5.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__5/OMERO3A__4.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__6/OMERO3A__5.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__7/OMERO3A__6.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__8/OMERO3A__6.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__9/OMERO3A__8.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__4/OMERO3__1.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__5/OMERO3__4.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__6/OMERO3__5.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__7/OMERO3__6.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.1__0/OMERO4__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4__0/OMERO3A__11.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 01:51:40 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/psql-footer.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/psql-header.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/schema.sql 01:51:41 inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/views.sql 01:51:41 + rm -f OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip 01:51:41 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36 /home/omero/workspace/OMERO-server/OMERO.server 01:51:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 01:51:41 ++ deactivate nondestructive 01:51:41 ++ '[' -n '' ']' 01:51:41 ++ '[' -n '' ']' 01:51:41 ++ hash -r 01:51:41 ++ '[' -n '' ']' 01:51:41 ++ unset VIRTUAL_ENV 01:51:41 ++ unset VIRTUAL_ENV_PROMPT 01:51:41 ++ '[' '!' nondestructive = nondestructive ']' 01:51:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 01:51:41 ++ export VIRTUAL_ENV 01:51:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:51:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:51:41 ++ export PATH 01:51:41 ++ '[' -n '' ']' 01:51:41 ++ '[' -z '' ']' 01:51:41 ++ _OLD_VIRTUAL_PS1= 01:51:41 ++ PS1='(.venv3) ' 01:51:41 ++ export PS1 01:51:41 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 01:51:41 ++ export VIRTUAL_ENV_PROMPT 01:51:41 ++ hash -r 01:51:41 + pip install -U pip 01:51:42 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 01:51:42 Collecting pip 01:51:42 Downloading pip-26.2.1-py3-none-any.whl (1.8 MB) 01:51:43 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 8.3 MB/s eta 0:00:00 01:51:43 Installing collected packages: pip 01:51:43 Attempting uninstall: pip 01:51:43 Found existing installation: pip 22.3.1 01:51:44 Uninstalling pip-22.3.1: 01:51:44 Successfully uninstalled pip-22.3.1 01:51:58 Successfully installed pip-26.2.1 01:51:58 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:51:59 Collecting zeroc-ice==3.6.5 01:51:59 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:52:02 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s 0:00:02 01:52:02 Installing collected packages: zeroc-ice 01:52:06 Successfully installed zeroc-ice-3.6.5 01:52:06 + pip install markdown 01:52:07 Collecting markdown 01:52:07 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB) 01:52:07 Using cached markdown-3.10.3-py3-none-any.whl (110 kB) 01:52:07 Installing collected packages: markdown 01:52:08 Successfully installed markdown-3.10.3 01:52:08 + pip install reportlab 01:52:09 Collecting reportlab 01:52:09 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) 01:52:09 Collecting pillow>=9.0.0 (from reportlab) 01:52:09 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) 01:52:10 Collecting charset-normalizer (from reportlab) 01:52:10 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) 01:52:10 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) 01:52:10 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:52:10 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 01:52:10 Installing collected packages: pillow, charset-normalizer, reportlab 01:52:19 01:52:19 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0 01:52:19 + pip install omego 01:52:20 Collecting omego 01:52:20 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 01:52:20 Collecting future (from omego) 01:52:20 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 01:52:20 Collecting yaclifw>=0.1.1 (from omego) 01:52:20 Using cached yaclifw-0.2.0-py3-none-any.whl 01:52:20 Collecting six (from yaclifw>=0.1.1->omego) 01:52:20 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 01:52:20 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 01:52:20 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:52:20 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 01:52:20 Installing collected packages: six, future, yaclifw, omego 01:52:26 01:52:26 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 01:52:26 + pip install tables 01:52:27 Collecting tables 01:52:27 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 01:52:27 Collecting numpy>=1.20.0 (from tables) 01:52:28 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 01:52:28 Collecting numexpr>=2.6.2 (from tables) 01:52:28 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 01:52:28 Collecting packaging (from tables) 01:52:28 Downloading packaging-26.3-py3-none-any.whl.metadata (3.5 kB) 01:52:28 Collecting py-cpuinfo (from tables) 01:52:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 01:52:29 Collecting blosc2>=2.3.0 (from tables) 01:52:29 Downloading blosc2-4.10.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) 01:52:29 Collecting ndindex (from blosc2>=2.3.0->tables) 01:52:29 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 01:52:29 Collecting msgpack (from blosc2>=2.3.0->tables) 01:52:29 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:52:29 Collecting pydantic (from blosc2>=2.3.0->tables) 01:52:29 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) 01:52:30 Collecting httpx[http2] (from blosc2>=2.3.0->tables) 01:52:30 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) 01:52:30 Collecting rich (from blosc2>=2.3.0->tables) 01:52:30 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) 01:52:30 Collecting threadpoolctl (from blosc2>=2.3.0->tables) 01:52:30 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) 01:52:30 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) 01:52:30 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) 01:52:30 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) 01:52:30 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) 01:52:30 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) 01:52:30 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) 01:52:31 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) 01:52:31 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB) 01:52:31 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) 01:52:31 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) 01:52:31 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) 01:52:31 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) 01:52:31 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) 01:52:31 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) 01:52:32 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB) 01:52:32 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) 01:52:32 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 01:52:32 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) 01:52:32 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB) 01:52:33 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) 01:52:33 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) 01:52:33 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) 01:52:33 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) 01:52:33 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) 01:52:33 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) 01:52:33 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 01:52:33 Downloading blosc2-4.10.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.4 MB) 01:52:34 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.4/7.4 MB 12.9 MB/s 0:00:00 01:52:34 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) 01:52:34 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:52:34 Using cached httpx-0.28.1-py3-none-any.whl (73 kB) 01:52:34 Using cached h2-4.4.1-py3-none-any.whl (62 kB) 01:52:34 Using cached hpack-4.2.0-py3-none-any.whl (34 kB) 01:52:34 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) 01:52:34 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) 01:52:34 Using cached h11-0.16.0-py3-none-any.whl (37 kB) 01:52:34 Using cached anyio-4.14.2-py3-none-any.whl (125 kB) 01:52:34 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:52:34 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) 01:52:34 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 01:52:34 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) 01:52:34 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 01:52:34 Downloading packaging-26.3-py3-none-any.whl (129 kB) 01:52:34 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 01:52:34 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) 01:52:34 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 01:52:35 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB) 01:52:35 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB) 01:52:35 Using cached rich-15.0.0-py3-none-any.whl (310 kB) 01:52:35 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) 01:52:35 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) 01:52:35 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) 01:52:35 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) 01:52:35 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables 01:53:25 01:53:25 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.10.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0 01:53:25 + pip install jinja2 01:53:26 Collecting jinja2 01:53:26 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 01:53:26 Collecting MarkupSafe>=2.0 (from jinja2) 01:53:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 01:53:26 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 01:53:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 01:53:27 Installing collected packages: MarkupSafe, jinja2 01:53:28 01:53:28 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 01:53:28 + pip install omero-py 01:53:29 Collecting omero-py 01:53:29 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB) 01:53:29 Collecting appdirs (from omero-py) 01:53:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 01:53:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 01:53:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) 01:53:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) 01:53:29 Collecting PyYAML (from omero-py) 01:53:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 01:53:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:53:29 Collecting requests (from omero-py) 01:53:29 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) 01:53:29 Collecting portalocker (from omero-py) 01:53:29 Using cached portalocker-4.1.0-py3-none-any.whl.metadata (11 kB) 01:53:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9) 01:53:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) 01:53:29 Collecting urllib3<3,>=1.26 (from requests->omero-py) 01:53:30 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) 01:53:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) 01:53:30 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 01:53:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:53:30 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB) 01:53:30 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:53:30 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:53:30 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:53:30 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py 01:53:48 01:53:49 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 urllib3-2.7.0 01:53:49 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 01:53:49 Collecting omero-metadata 01:53:49 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-9noo7sty/omero-metadata_9ff881567c6f4bae9d81e8a4529e348b 01:53:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-9noo7sty/omero-metadata_9ff881567c6f4bae9d81e8a4529e348b 01:53:51 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e8229f41c873777e23f6a4ea48767fb00a38a437 01:53:51 Installing build dependencies: started 01:53:52 Installing build dependencies: finished with status 'done' 01:53:52 Getting requirements to build wheel: started 01:53:52 Getting requirements to build wheel: finished with status 'done' 01:53:52 Preparing metadata (pyproject.toml): started 01:53:53 Preparing metadata (pyproject.toml): finished with status 'done' 01:53:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0) 01:53:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 01:53:53 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 01:53:53 Collecting pandas (from omero-metadata) 01:53:53 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 01:53:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 01:53:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 01:53:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6) 01:53:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) 01:53:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 01:53:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) 01:53:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.1.0) 01:53:53 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 01:53:53 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 01:53:53 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 01:53:53 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 01:53:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9) 01:53:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) 01:53:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) 01:53:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) 01:53:53 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) 01:53:54 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 01:53:54 Building wheels for collected packages: omero-metadata 01:53:54 Building wheel for omero-metadata (pyproject.toml): started 01:53:54 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 01:53:54 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=77e84d3d6a4a377e479e5e296ce2a19c369ce13902c22a5a9a9947fdb37badfe 01:53:54 Stored in directory: /tmp/pip-ephem-wheel-cache-lwt521ju/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 01:53:54 Successfully built omero-metadata 01:53:54 Installing collected packages: python-dateutil, pandas, omero-metadata 01:54:35 01:54:35 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0 01:54:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 01:54:36 Collecting omero-cli-render 01:54:36 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-kas8vmn0/omero-cli-render_3f546bf8c3814fc2ae10187cf63401dc 01:54:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-kas8vmn0/omero-cli-render_3f546bf8c3814fc2ae10187cf63401dc 01:54:37 Running command git checkout -b merge_ci --track origin/merge_ci 01:54:38 Switched to a new branch 'merge_ci' 01:54:38 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:54:38 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 28213e53b627fd468aba56c93889cfb6ef55207f 01:54:38 Installing build dependencies: started 01:54:39 Installing build dependencies: finished with status 'done' 01:54:39 Getting requirements to build wheel: started 01:54:39 Getting requirements to build wheel: finished with status 'done' 01:54:39 Preparing metadata (pyproject.toml): started 01:54:40 Preparing metadata (pyproject.toml): finished with status 'done' 01:54:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 01:54:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0) 01:54:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 01:54:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 01:54:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) 01:54:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) 01:54:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 01:54:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) 01:54:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.1.0) 01:54:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9) 01:54:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) 01:54:40 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) 01:54:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) 01:54:40 Building wheels for collected packages: omero-cli-render 01:54:40 Building wheel for omero-cli-render (pyproject.toml): started 01:54:40 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 01:54:40 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=5e9de63496958f3c7a4153361b023d08351ce55a3273fea1d7d8e696477b8b8e 01:54:40 Stored in directory: /tmp/pip-ephem-wheel-cache-yoawl3_u/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 01:54:40 Successfully built omero-cli-render 01:54:40 Installing collected packages: omero-cli-render 01:54:40 Successfully installed omero-cli-render-0.8.2.dev0 01:54:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 01:54:41 Collecting omero-cli-duplicate 01:54:41 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-halog35k/omero-cli-duplicate_1585624919e94160ba2c40ee8cba1bdb 01:54:41 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-halog35k/omero-cli-duplicate_1585624919e94160ba2c40ee8cba1bdb 01:54:42 Running command git checkout -b merge_ci --track origin/merge_ci 01:54:42 Switched to a new branch 'merge_ci' 01:54:42 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:54:42 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 821522cd00b37fd2a72328fad3a6b7a99969cddd 01:54:42 Installing build dependencies: started 01:54:44 Installing build dependencies: finished with status 'done' 01:54:44 Getting requirements to build wheel: started 01:54:44 Getting requirements to build wheel: finished with status 'done' 01:54:44 Preparing metadata (pyproject.toml): started 01:54:44 Preparing metadata (pyproject.toml): finished with status 'done' 01:54:44 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0) 01:54:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 01:54:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 01:54:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) 01:54:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) 01:54:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 01:54:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 01:54:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) 01:54:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.1.0) 01:54:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9) 01:54:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) 01:54:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) 01:54:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) 01:54:44 Building wheels for collected packages: omero-cli-duplicate 01:54:44 Building wheel for omero-cli-duplicate (pyproject.toml): started 01:54:44 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 01:54:44 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=238cf82e4a908bf8321b461ed260e6d72e1783bdf28260eba373e7c21976e86a 01:54:44 Stored in directory: /tmp/pip-ephem-wheel-cache-f_fmuhxi/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 01:54:44 Successfully built omero-cli-duplicate 01:54:45 Installing collected packages: omero-cli-duplicate 01:54:45 Successfully installed omero-cli-duplicate-0.4.1.dev0 01:54:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 01:54:46 Collecting omero-cli-zarr 01:54:46 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-msrb2ykq/omero-cli-zarr_9a13c6c03066459a84ae4217e465481f 01:54:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-msrb2ykq/omero-cli-zarr_9a13c6c03066459a84ae4217e465481f 01:54:47 Running command git checkout -b merge_ci --track origin/merge_ci 01:54:47 Switched to a new branch 'merge_ci' 01:54:47 branch 'merge_ci' set up to track 'origin/merge_ci'. 01:54:47 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit bda5b11031ad5a30a98ee841e16b594c8dd411e7 01:54:47 Installing build dependencies: started 01:54:48 Installing build dependencies: finished with status 'done' 01:54:48 Getting requirements to build wheel: started 01:54:48 Getting requirements to build wheel: finished with status 'done' 01:54:48 Installing backend dependencies: started 01:54:50 Installing backend dependencies: finished with status 'done' 01:54:50 Preparing metadata (pyproject.toml): started 01:54:50 Preparing metadata (pyproject.toml): finished with status 'done' 01:54:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0) 01:54:51 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 01:54:51 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) 01:54:51 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) 01:54:51 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:54:51 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) 01:54:51 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 01:54:51 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 01:54:51 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:51 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB) 01:54:52 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 01:54:52 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) 01:54:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) 01:54:52 Collecting scikit-image>=0.19.0 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dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:53 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 01:54:53 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3) 01:54:53 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:53 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 01:54:53 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 01:54:53 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:53 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 01:54:53 Collecting s3fs>=2026.6.0 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pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:55 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 01:54:55 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) 01:54:55 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.2) 01:54:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) 01:54:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) 01:54:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from 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(3.3 kB) 01:54:55 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:55 Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB) 01:54:55 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:55 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 01:54:56 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:56 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 01:54:56 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from 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01:54:57 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 01:54:57 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:57 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) 01:54:57 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:57 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) 01:54:57 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.57,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) 01:54:57 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from 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tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) 01:54:58 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:58 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) 01:54:58 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:58 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 01:54:58 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:58 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 01:54:58 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 01:54:58 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 01:54:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9) 01:54:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) 01:54:58 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) 01:54:59 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) 01:54:59 Using cached click-8.4.2-py3-none-any.whl (119 kB) 01:54:59 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 01:54:59 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB) 01:54:59 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 01:54:59 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) 01:54:59 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) 01:54:59 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) 01:54:59 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 01:54:59 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) 01:54:59 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB) 01:54:59 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB) 01:54:59 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 01:54:59 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 01:54:59 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB) 01:54:59 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 01:54:59 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 01:54:59 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB) 01:54:59 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) 01:54:59 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) 01:54:59 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 01:54:59 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 01:54:59 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 01:54:59 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) 01:54:59 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 01:55:00 Using cached imageio-2.37.4-py3-none-any.whl (318 kB) 01:55:00 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 01:55:00 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 01:55:00 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 01:55:00 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 01:55:00 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 01:55:00 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 01:55:00 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 01:55:00 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 01:55:00 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 01:55:00 Using cached zipp-4.1.0-py3-none-any.whl (10 kB) 01:55:00 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 01:55:00 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 01:55:00 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 01:55:01 Building wheels for collected packages: omero-cli-zarr 01:55:01 Building wheel for omero-cli-zarr (pyproject.toml): started 01:55:01 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 01:55:01 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+gbda5b11-py3-none-any.whl size=38400 sha256=30f90f34f690f6b501df3e8ce85b759cfab5ece83bba1cd032258c7abd6eed28 01:55:01 Stored in directory: /tmp/pip-ephem-wheel-cache-7_c7vo2o/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 01:55:01 Successfully built omero-cli-zarr 01:55:01 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 01:55:37 Attempting uninstall: pydantic-core 01:55:37 Found existing installation: pydantic_core 2.46.4 01:55:37 Uninstalling pydantic_core-2.46.4: 01:55:37 Successfully uninstalled pydantic_core-2.46.4 01:56:11 Attempting uninstall: pydantic 01:56:11 Found existing installation: pydantic 2.13.4 01:56:11 Uninstalling pydantic-2.13.4: 01:56:11 Successfully uninstalled pydantic-2.13.4 01:56:51 01:56:52 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+gbda5b11 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 01:56:52 + pip install omero-certificates 01:56:53 Collecting omero-certificates 01:56:53 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 01:56:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0) 01:56:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 01:56:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 01:56:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) 01:56:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) 01:56:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 01:56:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 01:56:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) 01:56:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.1.0) 01:56:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9) 01:56:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) 01:56:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) 01:56:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) 01:56:53 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 01:56:53 Installing collected packages: omero-certificates 01:56:54 Successfully installed omero-certificates-0.4.0 01:56:54 + for x in *.tar.gz 01:56:54 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 01:56:54 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 01:56:54 Installing build dependencies: started 01:56:56 Installing build dependencies: finished with status 'done' 01:56:56 Getting requirements to build wheel: started 01:56:56 Getting requirements to build wheel: finished with status 'done' 01:56:56 Preparing metadata (pyproject.toml): started 01:56:56 Preparing metadata (pyproject.toml): finished with status 'done' 01:56:56 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0) 01:56:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 01:56:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 01:56:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) 01:56:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) 01:56:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 01:56:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 01:56:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) 01:56:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.1.0) 01:56:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9) 01:56:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) 01:56:56 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) 01:56:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) 01:56:56 Building wheels for collected packages: omero-dropbox 01:56:56 Building wheel for omero-dropbox (pyproject.toml): started 01:56:57 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 01:56:57 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=4720f9e062daa77429247a9c936994ec802eae0724afd3ffd47c91fcdfb2e8ad 01:56:57 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 01:56:57 Successfully built omero-dropbox 01:56:57 Installing collected packages: omero-dropbox 01:56:57 Successfully installed omero-dropbox-5.7.1.dev0 01:56:58 + for x in *.tar.gz 01:56:58 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 01:56:58 Processing ./omero_marshal-0.9.2.dev0.tar.gz 01:56:58 Installing build dependencies: started 01:56:59 Installing build dependencies: finished with status 'done' 01:56:59 Getting requirements to build wheel: started 01:57:00 Getting requirements to build wheel: finished with status 'done' 01:57:00 Preparing metadata (pyproject.toml): started 01:57:00 Preparing metadata (pyproject.toml): finished with status 'done' 01:57:00 Building wheels for collected packages: omero_marshal 01:57:00 Building wheel for omero_marshal (pyproject.toml): started 01:57:00 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 01:57:00 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=f1cf73392e0de9e87ef2df03722475470c95959ab333d6e7bb1a2e1ef5917772 01:57:00 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 01:57:01 Successfully built omero_marshal 01:57:01 Installing collected packages: omero_marshal 01:57:03 Successfully installed omero_marshal-0.9.2.dev0 01:57:03 + for x in *.tar.gz 01:57:03 + pip install -U omero_py-5.23.1.dev0.tar.gz 01:57:04 Processing ./omero_py-5.23.1.dev0.tar.gz 01:57:04 Installing build dependencies: started 01:57:05 Installing build dependencies: finished with status 'done' 01:57:05 Getting requirements to build wheel: started 01:57:05 Getting requirements to build wheel: finished with status 'done' 01:57:05 Preparing metadata (pyproject.toml): started 01:57:06 Preparing metadata (pyproject.toml): finished with status 'done' 01:57:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4) 01:57:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0) 01:57:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6) 01:57:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0) 01:57:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3) 01:57:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5) 01:57:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2) 01:57:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.1.0) 01:57:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9) 01:57:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18) 01:57:06 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0) 01:57:06 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22) 01:57:06 Building wheels for collected packages: omero-py 01:57:06 Building wheel for omero-py (pyproject.toml): started 01:57:07 Building wheel for omero-py (pyproject.toml): finished with status 'done' 01:57:07 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786710 sha256=696477e17339839080b5afc2f266bfa6d25016573f83d948de4f3b0b25897a21 01:57:07 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d 01:57:07 Successfully built omero-py 01:57:07 Installing collected packages: omero-py 01:57:07 Attempting uninstall: omero-py 01:57:07 Found existing installation: omero-py 5.23.0 01:57:08 Uninstalling omero-py-5.23.0: 01:57:17 Successfully uninstalled omero-py-5.23.0 01:57:33 Successfully installed omero-py-5.23.1.dev0 01:57:33 + for x in *.tar.gz 01:57:33 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 01:57:34 Processing ./omero_scripts-5.10.1.dev0.tar.gz 01:57:34 Installing build dependencies: started 01:57:35 Installing build dependencies: finished with status 'done' 01:57:35 Getting requirements to build wheel: started 01:57:35 Getting requirements to build wheel: finished with status 'done' 01:57:35 Preparing metadata (pyproject.toml): started 01:57:36 Preparing metadata (pyproject.toml): finished with status 'done' 01:57:36 Building wheels for collected packages: omero-scripts 01:57:36 Building wheel for omero-scripts (pyproject.toml): started 01:57:36 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 01:57:36 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=fa07c35c43031882c09573731b4dbf9e3a068bf39e767b02adfaf5240f2eca19 01:57:36 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 01:57:36 Successfully built omero-scripts 01:57:36 Installing collected packages: omero-scripts 01:57:37 Successfully installed omero-scripts-5.10.1.dev0 01:57:37 + for x in *.tar.gz 01:57:37 + pip install -U omero_web-5.32.1.dev0.tar.gz 01:57:38 Processing ./omero_web-5.32.1.dev0.tar.gz 01:57:38 Installing build dependencies: started 01:57:40 Installing build dependencies: finished with status 'done' 01:57:40 Getting requirements to build wheel: started 01:57:40 Getting requirements to build wheel: finished with status 'done' 01:57:40 Preparing metadata (pyproject.toml): started 01:57:40 Preparing metadata (pyproject.toml): finished with status 'done' 01:57:40 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0) 01:57:40 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) 01:57:40 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 01:57:41 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) 01:57:41 Downloading django-5.2.17-py3-none-any.whl.metadata (4.1 kB) 01:57:41 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) 01:57:41 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 01:57:41 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) 01:57:41 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 01:57:41 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) 01:57:41 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 01:57:41 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) 01:57:41 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) 01:57:41 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) 01:57:41 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) 01:57:42 Collecting pytz (from omero-web==5.32.1.dev0) 01:57:42 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB) 01:57:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0) 01:57:42 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3) 01:57:42 Collecting importlib-resources (from omero-web==5.32.1.dev0) 01:57:42 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 01:57:42 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 01:57:42 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) 01:57:42 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) 01:57:42 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 01:57:42 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) 01:57:42 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) 01:57:42 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 01:57:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) 01:57:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) 01:57:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) 01:57:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) 01:57:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) 01:57:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) 01:57:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9) 01:57:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) 01:57:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) 01:57:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) 01:57:42 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 01:57:42 Downloading django-5.2.17-py3-none-any.whl (8.3 MB) 01:57:43 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 12.9 MB/s 0:00:00 01:57:43 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) 01:57:43 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 01:57:43 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 01:57:43 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) 01:57:43 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 01:57:43 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 01:57:43 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 01:57:43 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB) 01:57:43 Using cached wheel-0.47.0-py3-none-any.whl (32 kB) 01:57:43 Building wheels for collected packages: omero-web 01:57:43 Building wheel for omero-web (pyproject.toml): started 01:57:45 Building wheel for omero-web (pyproject.toml): finished with status 'done' 01:57:45 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820229 sha256=be55437bd7f1557d360b26bf773d5d008c6b7102cc35b398547997e8d56dd81b 01:57:45 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f 01:57:45 Successfully built omero-web 01:57:45 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 01:58:55 01:58:55 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 01:58:55 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:58:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 01:58:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 01:58:55 --2026-08-05 01:58:55-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 01:58:55 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ... 01:58:55 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 01:58:56 HTTP request sent, awaiting response... 200 OK 01:58:56 Length: 139337 (136K) [text/plain] 01:58:56 Saving to: ‘Figure_To_Pdf.py’ 01:58:56 01:58:56 0K .......... .......... .......... .......... .......... 36% 2.74M 0s 01:58:56 50K .......... .......... .......... .......... .......... 73% 5.37M 0s 01:58:56 100K .......... .......... .......... ...... 100% 6.55M=0.03s 01:58:56 01:58:56 2026-08-05 01:58:56 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] 01:58:56 01:58:56 + chmod 755 Figure_To_Pdf.py 01:58:56 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 01:58:56 + omero config set omero.db.name OMERO-server 01:59:02 + omero config set omero.db.host pg 01:59:07 + omero config set omero.db.user postgres 01:59:12 + omero config set omero.data.dir /home/omero/omero-server-data 01:59:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 01:59:22 + omero config set omero.db.poolsize 25 01:59:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 01:59:32 + omero config set omero.security.trustStorePassword changeit 01:59:37 + omero config set omero.mail.config true 01:59:42 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 01:59:47 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 01:59:52 + omero certificates 01:59:56 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) 01:59:56 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 01:59:56 + '[' false = true ']' 01:59:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 01:59:56 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 01:59:56 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG dbcommand => upgrade 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG dbhost => localhost 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG dbname => OMERO-server 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG dbpass => omero 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG dbuser => omero 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG rootpass => omero 01:59:57 2026-08-05 01:59:57,053 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 01:59:57 2026-08-05 01:59:57,054 [omego.extern] INFO Executing : omero version 02:00:01 OMERO.py version: 02:00:01 OMERO.server version: 02:00:01 5.6.3-634-4b8463ab5a-ice36-b36 02:00:01 5.23.1.dev0 02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO Completed [4.751 s] 02:00:01 2026-08-05 02:00:01,805 [omego.extern] DEBUG Using omero CLI from omero 02:00:01 2026-08-05 02:00:01,805 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO Executing : omero config get --show-password 02:00:06 2026-08-05 02:00:06,694 [omego.extern] INFO Completed [4.889 s] 02:00:06 2026-08-05 02:00:06,694 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:00:06 2026-08-05 02:00:06,695 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO Completed [0.079 s] 02:00:06 2026-08-05 02:00:06,774 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 02:00:06 2026-08-05 02:00:06,774 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 02:00:06 02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO Executing : omero config get --show-password 02:00:11 2026-08-05 02:00:11,535 [omego.extern] INFO Completed [4.761 s] 02:00:11 2026-08-05 02:00:11,535 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:00:11 2026-08-05 02:00:11,535 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 02:00:11 2026-08-05 02:00:11,611 [omego.extern] INFO Completed [0.076 s] 02:00:11 2026-08-05 02:00:11,611 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 02:00:11 2026-08-05 02:00:11,611 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 02:00:11 2026-08-05 02:00:11,612 [omego.extern] INFO Running [current environment]: omero config get --show-password 02:00:11 2026-08-05 02:00:11,612 [omego.extern] INFO Executing : omero config get --show-password 02:00:17 2026-08-05 02:00:17,155 [omego.extern] INFO Completed [5.544 s] 02:00:17 2026-08-05 02:00:17,155 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 02:00:17 2026-08-05 02:00:17,156 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 02:00:17 2026-08-05 02:00:17,719 [omego.extern] INFO Completed [0.563 s] 02:00:17 2026-08-05 02:00:17,719 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 02:00:17 2026-08-05 02:00:17,719 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 02:00:17 2026-08-05 02:00:17,760 [ omego.db] INFO Database is already at OMERO5.4__0 02:00:17 + export LANG=en_US.UTF-8 02:00:17 + LANG=en_US.UTF-8 02:00:17 + export LANGUAGE=en_US:en 02:00:17 + LANGUAGE=en_US:en 02:00:17 + export LC_ALL=en_US.UTF-8 02:00:17 + LC_ALL=en_US.UTF-8 02:00:17 + BUILD_ID=DONT_KILL_ME 02:00:17 + omero admin start 02:00:28 WARNING: lock files in /home/omero/omero-server-data 02:00:28 ---------------------------------------- 02:00:28 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock 02:00:28 ---------------------------------------- 02:00:28 02:00:28 You may want to stop all server processes and remove 02:00:28 these files manually. Lock files can remain after an 02:00:28 abrupt server outage and are especially frequent on 02:00:28 remotely mounted filesystems like NFS. 02:00:28 02:00:29 No descriptor given. Using etc/grid/default.xml 02:00:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 02:00:40 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 02:00:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 02:00:40 Waiting on startup. Use CTRL-C to exit 02:00:41 + omero admin waitup 02:00:45 Waiting on startup. Use CTRL-C to exit 02:00:46 + omero admin diagnostics 02:00:50 02:00:50 ================================================================================ 02:00:50 OMERO Diagnostics (admin) 02:00:50 ================================================================================ 02:00:50 02:00:50 Commands: java -version 21.0.12 (/usr/bin/java) 02:00:50 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 02:00:50 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 02:00:50 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 02:00:50 Commands: psql --version 16.14 (/usr/bin/psql) 02:00:50 Commands: openssl version 3.5.527 (/usr/bin/openssl) 02:00:50 02:00:50 Component: OMERO.py 5.23.1.dev0 02:00:50 Component: OMERO.server 5.6.3-634-4b8463ab5a-ice36-b36 02:00:50 02:00:50 Server: icegridnode running 02:00:50 Server: Blitz-0 active (pid = 3553, enabled) 02:00:50 Server: Indexer-0 active (pid = 3590, enabled) 02:00:50 Server: OMERO.Glacier2 active (pid = 3581, enabled) 02:00:50 Server: OMERO.IceStorm active (pid = 3589, enabled) 02:00:50 Server: Processor-0 activating (enabled) 02:00:50 Server: Tables-0 activating (enabled) 02:00:50 02:00:50 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 02:00:50 Log files: Blitz-0.log 22.7 KB errors=0 warnings=1 02:00:50 Log files: DropBox.log n/a 02:00:50 Log files: FileServer.log n/a 02:00:50 Log files: Indexer-0.log 2.6 KB 02:00:50 Log files: MonitorServer.log n/a 02:00:50 Log files: Processor-0.log 592 B 02:00:50 Log files: Tables-0.log 841 B 02:00:50 Log files: TestDropBox.log n/a 02:00:50 Log files: master.err empty 02:00:50 Log files: master.out 30.5 KB 02:00:50 Log files: Total size 0.06 MB 02:00:50 02:00:50 02:00:50 Environment:OMERO_HOME=(unset) 02:00:50 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 02:00:50 Environment:OMERO_NODE=(unset) 02:00:50 Environment:OMERO_MASTER=(unset) 02:00:50 Environment:OMERO_USERDIR=(unset) 02:00:50 Environment:OMERO_TMPDIR=(unset) 02:00:50 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:00:50 Environment:PYTHONPATH=(unset) 02:00:50 Environment:ICE_HOME=/opt/ice-3.6.5 02:00:50 Environment:LD_LIBRARY_PATH=(unset) 02:00:50 Environment:DYLD_LIBRARY_PATH=(unset) 02:00:50 02:00:50 OMERO SSL port:4064 02:00:50 OMERO TCP port:4063 02:00:50 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 02:00:51 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 02:00:51 02:00:51 JVM settings: Blitz-${index} -Xmx7200m 02:00:51 JVM settings: Indexer-${index} -Xmx4800m 02:00:51 JVM settings: PixelData-${index} -Xmx7200m 02:00:51 JVM settings: Repository-${index} -Xmx4800m 02:00:51 02:00:51 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:00:51 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:00:51 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce 02:00:51 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e 02:00:51 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff 02:00:51 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 02:00:51 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 02:00:51 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb 02:00:51 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e 02:00:51 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT 02:00:51 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 02:00:51 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT 02:00:51 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 02:00:51 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 02:00:51 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 02:00:51 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT 02:00:51 + deactivate 02:00:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 02:00:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 02:00:51 + export PATH 02:00:51 + unset _OLD_VIRTUAL_PATH 02:00:51 + '[' -n '' ']' 02:00:51 + hash -r 02:00:51 + '[' -n '' ']' 02:00:51 + unset VIRTUAL_ENV 02:00:51 + unset VIRTUAL_ENV_PROMPT 02:00:51 + '[' '!' '' = nondestructive ']' 02:00:51 + unset -f deactivate 02:00:51 Finished: SUCCESS