06:38:52 Started by upstream project "Trigger" build number 35 06:38:52 originally caused by: 06:38:52 Started by user devspace 06:38:52 Running as SYSTEM 06:38:52 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 06:38:53 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17662400259487857353.sh 06:38:53 + source /home/settings.env 06:38:53 ++ OMERO_DB_HOST=pg 06:38:53 ++ OMERO_DB_USER=postgres 06:38:53 ++ OMERO_DB_PASS= 06:38:53 ++ OMERO_ROOT_PASS=omero 06:38:53 ++ OMERO_DATA_DIR=/OMERO 06:38:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 06:38:53 + OMERO_DB_NAME=OMERO-server 06:38:53 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 06:38:53 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 06:38:53 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 06:38:53 + OMERO_DATA_DIR=/home/omero/omero-server-data 06:38:53 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 06:38:53 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 06:38:53 ++ deactivate nondestructive 06:38:53 ++ '[' -n '' ']' 06:38:53 ++ '[' -n '' ']' 06:38:53 ++ '[' -n /bin/bash -o -n '' ']' 06:38:53 ++ hash -r 06:38:53 ++ '[' -n '' ']' 06:38:53 ++ unset VIRTUAL_ENV 06:38:53 ++ '[' '!' nondestructive = nondestructive ']' 06:38:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 06:38:53 ++ export VIRTUAL_ENV 06:38:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:38:53 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:38:53 ++ export PATH 06:38:53 ++ '[' -n '' ']' 06:38:53 ++ '[' -z '' ']' 06:38:53 ++ _OLD_VIRTUAL_PS1= 06:38:53 ++ PS1='(.venv3) ' 06:38:53 ++ export PS1 06:38:53 ++ '[' -n /bin/bash -o -n '' ']' 06:38:53 ++ hash -r 06:38:53 + omero admin stop 06:39:06 Server not running 06:39:07 + echo not running 06:39:07 not running 06:39:07 + sleep 5 06:39:12 + deactivate 06:39:12 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 06:39:12 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:39:12 + export PATH 06:39:12 + unset _OLD_VIRTUAL_PATH 06:39:12 + '[' -n '' ']' 06:39:12 + '[' -n /bin/bash -o -n '' ']' 06:39:12 + hash -r 06:39:12 + '[' -n '' ']' 06:39:12 + unset VIRTUAL_ENV 06:39:12 + '[' '!' '' = nondestructive ']' 06:39:12 + unset -f deactivate 06:39:12 + rm -rf /home/omero/workspace/OMERO-server/.venv3 06:39:21 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 06:39:26 + '[' false = true ']' 06:39:26 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 06:39:26 Skipping PURGE_DATA:CleanDbAndRepo 06:39:26 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 06:39:31 Copied 1 artifact from "OMERO-build" build number 30 06:39:31 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 30 06:39:32 Copied 2 artifacts from "OMERO-build-build" build number 31 06:39:32 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16701224366836049590.sh 06:39:32 + source /home/settings.env 06:39:32 ++ OMERO_DB_HOST=pg 06:39:32 ++ OMERO_DB_USER=postgres 06:39:32 ++ OMERO_DB_PASS= 06:39:32 ++ OMERO_ROOT_PASS=omero 06:39:32 ++ OMERO_DATA_DIR=/OMERO 06:39:32 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 06:39:32 + OMERO_DB_NAME=OMERO-server 06:39:32 + OMERO_DATA_DIR=/home/omero/omero-server-data 06:39:32 + mkdir -p /home/omero/omero-server-data 06:39:32 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 06:39:32 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 06:39:32 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 06:39:32 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 06:39:32 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 06:39:32 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 06:39:32 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 06:39:32 ++ ls OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:39:32 + ZIP=OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:39:32 + '[' '!' -z '' ']' 06:39:32 + DIST=OMERO.server-5.6.3-452-73ca23df5e-ice36 06:39:32 + unzip OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:39:32 Archive: OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/blitz/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/grid/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/profiles/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/error/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/grid/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/luts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/luts/janelia/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/luts/ncsa_paledit/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/luts/wcif/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/analysis_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/annotation_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/export_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/figure_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/import_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/scripts/omero/util_scripts/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/server/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/share/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/share/licenses/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/misc/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__1/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__10/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__11/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__2/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__3/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__4/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__5/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__6/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__7/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__8/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3A__9/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3__4/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3__5/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3__6/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO3__7/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4.1__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4.2__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4.2__0/t/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4.3__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4.4__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO4__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.0__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.1__1/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.2__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__1/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__2/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__3/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/ 06:39:32 creating: OMERO.server-5.6.3-452-73ca23df5e-ice36/var/ 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/LICENSE.txt 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/backup.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/blitz/mail-senders.example 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/blitz/mail-server.example 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/build.properties 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/env.bat 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/env.sh 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/hibernate.properties 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/ice.config 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/logback-cli.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/logback-indexing-cli.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/logback-indexing.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/logback.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/mime.types 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/node1.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/node2.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/omero.properties 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/profiles/psql 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/rollover.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/Windows.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/error/maintainance.html 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/grid/README 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/grid/default.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/grid/templates.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/grid/windefault.xml 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/ice.config 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/internal.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/master.cfg 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/templates/robot.template 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/etc/testdropbox.config 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/history.rst 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/OMEZarrReader.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/activation.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aggdesigner-algorithm.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aircompressor.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/annotations.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/antlr.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aopalliance.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/avatica-core.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/avatica-metrics.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aws-java-sdk-core.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aws-java-sdk-kms.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/aws-java-sdk-s3.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/base.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-all.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-anim.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-awt-util.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-bridge.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-codec.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-constants.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-css.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-dom.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-ext.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-extension.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-gui-util.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-gvt.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-i18n.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-parser.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-rasterizer-ext.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-rasterizer.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-script.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-slideshow.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-squiggle-ext.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-squiggle.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-svg-dom.jar 06:39:32 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/lib/client/batik-svgbrowser.jar 06:39:32 inflating: 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OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/psql-header.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/schema.sql 06:39:35 inflating: OMERO.server-5.6.3-452-73ca23df5e-ice36/sql/psql/OMERO5.4__0/views.sql 06:39:35 + rm -f OMERO.server-5.6.3-452-73ca23df5e-ice36.zip 06:39:35 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-452-73ca23df5e-ice36 /home/omero/workspace/OMERO-server/OMERO.server 06:39:35 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 06:39:35 ++ deactivate nondestructive 06:39:35 ++ '[' -n '' ']' 06:39:35 ++ '[' -n '' ']' 06:39:35 ++ '[' -n /bin/bash -o -n '' ']' 06:39:35 ++ hash -r 06:39:35 ++ '[' -n '' ']' 06:39:35 ++ unset VIRTUAL_ENV 06:39:35 ++ '[' '!' nondestructive = nondestructive ']' 06:39:35 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 06:39:35 ++ export VIRTUAL_ENV 06:39:35 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:39:35 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:39:35 ++ export PATH 06:39:35 ++ '[' -n '' ']' 06:39:35 ++ '[' -z '' ']' 06:39:35 ++ _OLD_VIRTUAL_PS1= 06:39:35 ++ PS1='(.venv3) ' 06:39:35 ++ export PS1 06:39:35 ++ '[' -n /bin/bash -o -n '' ']' 06:39:35 ++ hash -r 06:39:35 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 06:39:35 Collecting zeroc-ice==3.6.5 06:39:36 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 06:39:38 Installing collected packages: zeroc-ice 06:39:39 Successfully installed zeroc-ice-3.6.5 06:39:39 + pip install -U pip future 06:39:39 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 06:39:39 Collecting pip 06:39:39 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 06:39:39 Collecting future 06:39:39 Using cached future-1.0.0-py3-none-any.whl (491 kB) 06:39:40 Installing collected packages: pip, future 06:39:40 Attempting uninstall: pip 06:39:40 Found existing installation: pip 21.2.3 06:39:40 Uninstalling pip-21.2.3: 06:39:40 Successfully uninstalled pip-21.2.3 06:39:42 Successfully installed future-1.0.0 pip-24.0 06:39:42 + pip install markdown 06:39:44 Collecting markdown 06:39:44 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB) 06:39:44 Collecting importlib-metadata>=4.4 (from markdown) 06:39:44 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 06:39:44 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown) 06:39:44 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 06:39:44 Using cached Markdown-3.6-py3-none-any.whl (105 kB) 06:39:44 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 06:39:44 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 06:39:44 Installing collected packages: zipp, importlib-metadata, markdown 06:39:44 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1 06:39:44 + pip install reportlab 06:39:45 Collecting reportlab 06:39:45 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB) 06:39:46 Collecting pillow>=9.0.0 (from reportlab) 06:39:46 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 06:39:46 Collecting chardet (from reportlab) 06:39:46 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 06:39:46 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB) 06:39:46 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 06:39:46 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 06:39:46 Installing collected packages: pillow, chardet, reportlab 06:39:48 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.1.0 06:39:48 + pip install omego 06:39:49 Collecting omego 06:39:49 Using cached omego-0.7.0-py3-none-any.whl 06:39:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 06:39:49 Collecting yaclifw>=0.1.1 (from omego) 06:39:49 Using cached yaclifw-0.2.0-py3-none-any.whl 06:39:49 Collecting six (from yaclifw>=0.1.1->omego) 06:39:49 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 06:39:49 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 06:39:49 Installing collected packages: six, yaclifw, omego 06:39:49 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 06:39:49 + pip install tables 06:39:50 Collecting tables 06:39:50 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 06:39:50 Collecting numpy>=1.19.0 (from tables) 06:39:50 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 06:39:51 Collecting numexpr>=2.6.2 (from tables) 06:39:51 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB) 06:39:51 Collecting packaging (from tables) 06:39:51 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 06:39:51 Collecting py-cpuinfo (from tables) 06:39:51 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 06:39:51 Collecting blosc2>=2.3.0 (from tables) 06:39:51 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 06:39:51 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 06:39:51 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB) 06:39:51 Collecting msgpack (from blosc2>=2.3.0->tables) 06:39:51 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB) 06:39:51 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 06:39:52 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 06:39:52 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB) 06:39:52 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 06:39:52 Using cached packaging-24.0-py3-none-any.whl (53 kB) 06:39:52 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 06:39:52 Using cached ndindex-1.8-py3-none-any.whl (91 kB) 06:39:52 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB) 06:39:53 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 06:39:57 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2 06:39:57 + pip install jinja2 06:39:58 Collecting jinja2 06:39:58 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 06:39:58 Collecting MarkupSafe>=2.0 (from jinja2) 06:39:58 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 06:39:58 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 06:39:58 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 06:39:58 Installing collected packages: MarkupSafe, jinja2 06:39:59 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3 06:39:59 + pip install omero-py 06:40:00 Collecting omero-py 06:40:00 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB) 06:40:00 Collecting urllib3<2 (from omero-py) 06:40:00 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 06:40:00 Collecting appdirs (from omero-py) 06:40:00 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 06:40:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 06:40:00 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4) 06:40:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0) 06:40:00 Collecting PyYAML (from omero-py) 06:40:00 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 06:40:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 06:40:00 Collecting requests (from omero-py) 06:40:00 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 06:40:00 Collecting portalocker (from omero-py) 06:40:00 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB) 06:40:00 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 06:40:00 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 06:40:00 Collecting idna<4,>=2.5 (from requests->omero-py) 06:40:01 Downloading idna-3.7-py3-none-any.whl.metadata (9.9 kB) 06:40:01 Collecting certifi>=2017.4.17 (from requests->omero-py) 06:40:01 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 06:40:01 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB) 06:40:01 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 06:40:01 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 06:40:01 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB) 06:40:01 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 06:40:01 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 06:40:01 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 06:40:01 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 06:40:01 Downloading idna-3.7-py3-none-any.whl (66 kB) 06:40:01 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.8/66.8 kB 2.8 MB/s eta 0:00:00 06:40:01 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py 06:40:04 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18 06:40:04 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 06:40:05 Collecting omero-metadata 06:40:05 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-mq6ua0bu/omero-metadata_249749c9212142609440377bb1edc0c4 06:40:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-mq6ua0bu/omero-metadata_249749c9212142609440377bb1edc0c4 06:40:06 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 5765f2947087d9f999f731a988e1c7afaed06868 06:40:06 Installing build dependencies: started 06:40:08 Installing build dependencies: finished with status 'done' 06:40:08 Getting requirements to build wheel: started 06:40:08 Getting requirements to build wheel: finished with status 'done' 06:40:08 Installing backend dependencies: started 06:40:09 Installing backend dependencies: finished with status 'done' 06:40:09 Preparing metadata (pyproject.toml): started 06:40:10 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:10 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.1) 06:40:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1) 06:40:10 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3) 06:40:10 Collecting pandas (from omero-metadata) 06:40:10 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) 06:40:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18) 06:40:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 06:40:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 06:40:10 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 06:40:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0) 06:40:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 06:40:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0) 06:40:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2) 06:40:10 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 06:40:10 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 06:40:10 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 06:40:10 Collecting pytz>=2020.1 (from pandas->omero-metadata) 06:40:10 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) 06:40:10 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 06:40:10 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB) 06:40:10 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 06:40:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 06:40:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7) 06:40:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2) 06:40:10 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 06:40:11 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 06:40:11 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB) 06:40:11 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB) 06:40:11 Building wheels for collected packages: omero-metadata 06:40:11 Building wheel for omero-metadata (pyproject.toml): started 06:40:11 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 06:40:11 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=1c39f95ef3d722c2c1b177ee45ce92f77ce7f109b9f9dcff545a134a4f3871ed 06:40:11 Stored in directory: /tmp/pip-ephem-wheel-cache-v4imwcuo/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 06:40:11 Successfully built omero-metadata 06:40:11 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 06:40:17 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1 06:40:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 06:40:18 Collecting omero-cli-render 06:40:18 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-olem480q/omero-cli-render_bb02033eadca4dc682556d3b46276c3c 06:40:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-olem480q/omero-cli-render_bb02033eadca4dc682556d3b46276c3c 06:40:19 Running command git checkout -b merge_ci --track origin/merge_ci 06:40:20 Switched to a new branch 'merge_ci' 06:40:20 branch 'merge_ci' set up to track 'origin/merge_ci'. 06:40:20 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit dc5d3794bd886807940a9fb878b5014dfb5eb4f1 06:40:20 Installing build dependencies: started 06:40:21 Installing build dependencies: finished with status 'done' 06:40:21 Getting requirements to build wheel: started 06:40:22 Getting requirements to build wheel: finished with status 'done' 06:40:22 Installing backend dependencies: started 06:40:23 Installing backend dependencies: finished with status 'done' 06:40:23 Preparing metadata (pyproject.toml): started 06:40:23 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:23 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1) 06:40:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.1) 06:40:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0) 06:40:23 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18) 06:40:23 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 06:40:23 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 06:40:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0) 06:40:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 06:40:23 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0) 06:40:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2) 06:40:23 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 06:40:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7) 06:40:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2) 06:40:23 Building wheels for collected packages: omero-cli-render 06:40:23 Building wheel for omero-cli-render (pyproject.toml): started 06:40:23 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 06:40:23 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=40fe896ee7c2bd0ee733a0cce4bd5e44793f6c55e3d49bd0838f2d7b8b47700c 06:40:23 Stored in directory: /tmp/pip-ephem-wheel-cache-icty99z6/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 06:40:23 Successfully built omero-cli-render 06:40:23 Installing collected packages: omero-cli-render 06:40:23 Successfully installed omero-cli-render-0.8.1.dev0 06:40:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 06:40:24 Collecting omero-cli-duplicate 06:40:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-zotl3zcf/omero-cli-duplicate_8d219cabfe9e49df9c687b3db6f53f0a 06:40:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-zotl3zcf/omero-cli-duplicate_8d219cabfe9e49df9c687b3db6f53f0a 06:40:25 Running command git checkout -b merge_ci --track origin/merge_ci 06:40:25 Switched to a new branch 'merge_ci' 06:40:25 branch 'merge_ci' set up to track 'origin/merge_ci'. 06:40:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 9c9bfb21af28188db3e22fb95855347740192d12 06:40:25 Installing build dependencies: started 06:40:27 Installing build dependencies: finished with status 'done' 06:40:27 Getting requirements to build wheel: started 06:40:27 Getting requirements to build wheel: finished with status 'done' 06:40:27 Installing backend dependencies: started 06:40:29 Installing backend dependencies: finished with status 'done' 06:40:29 Preparing metadata (pyproject.toml): started 06:40:29 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:29 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.1) 06:40:29 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18) 06:40:29 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 06:40:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 06:40:29 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 06:40:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0) 06:40:29 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1) 06:40:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 06:40:29 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0) 06:40:29 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2) 06:40:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 06:40:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7) 06:40:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2) 06:40:29 Building wheels for collected packages: omero-cli-duplicate 06:40:29 Building wheel for omero-cli-duplicate (pyproject.toml): started 06:40:29 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 06:40:29 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=9d2ed367e805702cb919d9866a93546404814c7587f86dda12a750625a92cec8 06:40:29 Stored in directory: /tmp/pip-ephem-wheel-cache-2czdx_b6/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 06:40:29 Successfully built omero-cli-duplicate 06:40:29 Installing collected packages: omero-cli-duplicate 06:40:30 Successfully installed omero-cli-duplicate-0.4.1.dev0 06:40:30 + pip install omero-certificates 06:40:31 Collecting omero-certificates 06:40:31 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 06:40:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.1) 06:40:31 Collecting distro==1.8.0 (from omero-certificates) 06:40:31 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 06:40:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18) 06:40:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 06:40:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 06:40:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 06:40:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0) 06:40:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1) 06:40:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 06:40:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0) 06:40:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2) 06:40:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 06:40:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7) 06:40:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2) 06:40:31 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 06:40:31 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 06:40:31 Installing collected packages: distro, omero-certificates 06:40:31 Successfully installed distro-1.8.0 omero-certificates-0.3.2 06:40:31 + for x in *.tar.gz 06:40:31 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz 06:40:32 Processing ./omero-dropbox-5.6.3.dev0.tar.gz 06:40:32 Installing build dependencies: started 06:40:34 Installing build dependencies: finished with status 'done' 06:40:34 Getting requirements to build wheel: started 06:40:34 Getting requirements to build wheel: finished with status 'done' 06:40:34 Installing backend dependencies: started 06:40:36 Installing backend dependencies: finished with status 'done' 06:40:36 Preparing metadata (pyproject.toml): started 06:40:36 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:36 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.1) 06:40:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18) 06:40:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4) 06:40:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0) 06:40:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4) 06:40:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0) 06:40:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1) 06:40:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5) 06:40:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0) 06:40:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2) 06:40:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2) 06:40:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7) 06:40:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2) 06:40:36 Building wheels for collected packages: omero-dropbox 06:40:36 Building wheel for omero-dropbox (pyproject.toml): started 06:40:36 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 06:40:36 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=27a53d44a77529ea45e280ac73530bb8ea00771ebad76632a167635054791333 06:40:36 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1 06:40:36 Successfully built omero-dropbox 06:40:37 Installing collected packages: omero-dropbox 06:40:37 Successfully installed omero-dropbox-5.6.3.dev0 06:40:37 + for x in *.tar.gz 06:40:37 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 06:40:37 Processing ./omero_marshal-0.9.1.dev0.tar.gz 06:40:37 Installing build dependencies: started 06:40:40 Installing build dependencies: finished with status 'done' 06:40:40 Getting requirements to build wheel: started 06:40:40 Getting requirements to build wheel: finished with status 'done' 06:40:40 Installing backend dependencies: started 06:40:42 Installing backend dependencies: finished with status 'done' 06:40:42 Preparing metadata (pyproject.toml): started 06:40:42 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:42 Building wheels for collected packages: omero_marshal 06:40:42 Building wheel for omero_marshal (pyproject.toml): started 06:40:42 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 06:40:42 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=2b3c9e892f166896bc950af9a2d103ab502d7145ec32ad2a4f7f96be00372a26 06:40:42 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 06:40:42 Successfully built omero_marshal 06:40:43 Installing collected packages: omero_marshal 06:40:43 Successfully installed omero_marshal-0.9.1.dev0 06:40:43 + for x in *.tar.gz 06:40:43 + pip install -U omero-py-5.19.2.dev0.tar.gz 06:40:43 Processing ./omero-py-5.19.2.dev0.tar.gz 06:40:44 Installing build dependencies: started 06:40:46 Installing build dependencies: finished with status 'done' 06:40:46 Getting requirements to build wheel: started 06:40:47 Getting requirements to build wheel: finished with status 'done' 06:40:47 Installing backend dependencies: started 06:40:48 Installing backend dependencies: finished with status 'done' 06:40:48 Preparing metadata (pyproject.toml): started 06:40:48 Preparing metadata (pyproject.toml): finished with status 'done' 06:40:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18) 06:40:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4) 06:40:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0) 06:40:49 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4) 06:40:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.3.0) 06:40:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1) 06:40:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5) 06:40:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0) 06:40:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2) 06:40:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2) 06:40:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.7) 06:40:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2) 06:40:49 Building wheels for collected packages: omero-py 06:40:49 Building wheel for omero-py (pyproject.toml): started 06:40:51 Building wheel for omero-py (pyproject.toml): finished with status 'done' 06:40:52 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2782056 sha256=7f16c85304764b16c85c60611d67e86fd53e6128aa97541994e703c13d6cae06 06:40:52 Stored in directory: /home/omero/.cache/pip/wheels/9c/89/be/2493ce5a19b07550997c567708af9d7056cfee1f4f39ac699d 06:40:52 Successfully built omero-py 06:40:52 Installing collected packages: omero-py 06:40:52 Attempting uninstall: omero-py 06:40:52 Found existing installation: omero-py 5.19.1 06:40:52 Uninstalling omero-py-5.19.1: 06:40:53 Successfully uninstalled omero-py-5.19.1 06:40:56 Successfully installed omero-py-5.19.2.dev0 06:40:56 + for x in *.tar.gz 06:40:56 + pip install -U omero-scripts-5.8.1.dev0.tar.gz 06:40:56 Processing ./omero-scripts-5.8.1.dev0.tar.gz 06:40:57 Installing build dependencies: started 06:40:59 Installing build dependencies: finished with status 'done' 06:40:59 Getting requirements to build wheel: started 06:40:59 Getting requirements to build wheel: finished with status 'done' 06:40:59 Installing backend dependencies: started 06:41:01 Installing backend dependencies: finished with status 'done' 06:41:01 Preparing metadata (pyproject.toml): started 06:41:01 Preparing metadata (pyproject.toml): finished with status 'done' 06:41:01 Building wheels for collected packages: omero-scripts 06:41:01 Building wheel for omero-scripts (pyproject.toml): started 06:41:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 06:41:01 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=d79ff896ae1eab2712cefc7dd42f75ff985eb4f71d33b3bd9023a578cc48db0c 06:41:01 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf 06:41:01 Successfully built omero-scripts 06:41:02 Installing collected packages: omero-scripts 06:41:02 Successfully installed omero-scripts-5.8.1.dev0 06:41:02 + for x in *.tar.gz 06:41:02 + pip install -U omero-web-5.25.1.dev0.tar.gz 06:41:02 Processing ./omero-web-5.25.1.dev0.tar.gz 06:41:03 Installing build dependencies: started 06:41:05 Installing build dependencies: finished with status 'done' 06:41:05 Getting requirements to build wheel: started 06:41:05 Getting requirements to build wheel: finished with status 'done' 06:41:05 Installing backend dependencies: started 06:41:06 Installing backend dependencies: finished with status 'done' 06:41:06 Preparing metadata (pyproject.toml): started 06:41:07 Preparing metadata (pyproject.toml): finished with status 'done' 06:41:07 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0) 06:41:07 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0) 06:41:07 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 06:41:07 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0) 06:41:07 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB) 06:41:07 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0) 06:41:07 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 06:41:08 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0) 06:41:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 06:41:08 Collecting django-csp (from omero-web==5.25.1.dev0) 06:41:08 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 06:41:08 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0) 06:41:08 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB) 06:41:08 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0) 06:41:08 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) 06:41:08 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0) 06:41:08 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0) 06:41:08 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1) 06:41:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2) 06:41:08 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0) 06:41:08 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 06:41:08 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 06:41:08 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 06:41:08 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) 06:41:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18) 06:41:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4) 06:41:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0) 06:41:08 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4) 06:41:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1) 06:41:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5) 06:41:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0) 06:41:08 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0) 06:41:08 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB) 06:41:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2) 06:41:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7) 06:41:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2) 06:41:09 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 06:41:09 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 06:41:09 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 06:41:09 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB) 06:41:09 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) 06:41:09 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB) 06:41:09 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 06:41:09 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 06:41:09 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) 06:41:09 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB) 06:41:09 Building wheels for collected packages: omero-web 06:41:09 Building wheel for omero-web (pyproject.toml): started 06:41:10 Building wheel for omero-web (pyproject.toml): finished with status 'done' 06:41:10 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=2e1e6d39c8dac1fee41c15fa26d07b67eb459f82aa0d1bdb0781b7155fb3959a 06:41:10 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a 06:41:10 Successfully built omero-web 06:41:11 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 06:41:14 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.11.0 whitenoise-6.6.0 06:41:15 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 06:41:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 06:41:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 06:41:15 --2024-04-12 06:41:15-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 06:41:16 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ... 06:41:16 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 06:41:16 HTTP request sent, awaiting response... 200 OK 06:41:16 Length: 94614 (92K) [text/plain] 06:41:16 Saving to: ‘Figure_To_Pdf.py’ 06:41:16 06:41:16 0K .......... .......... .......... .......... .......... 54% 2.40M 0s 06:41:16 50K .......... .......... .......... .......... .. 100% 8.50M=0.03s 06:41:16 06:41:16 2024-04-12 06:41:16 (3.58 MB/s) - ‘Figure_To_Pdf.py’ saved [94614/94614] 06:41:16 06:41:16 + chmod 755 Figure_To_Pdf.py 06:41:16 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 06:41:16 + omero config set omero.db.name OMERO-server 06:41:18 + omero config set omero.db.host pg 06:41:20 + omero config set omero.db.user postgres 06:41:22 + omero config set omero.data.dir /home/omero/omero-server-data 06:41:24 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 06:41:25 + omero config set omero.db.poolsize 25 06:41:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 06:41:29 + omero config set omero.security.trustStorePassword changeit 06:41:30 + omero config set omero.mail.config true 06:41:32 + omero config set omero.mail.from qa@openmicroscopy.org.uk 06:41:35 + omero config set omero.mail.host smtp.dundee.ac.uk 06:41:37 + omero certificates 06:41:39 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 06:41:39 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 06:41:39 + '[' false = true ']' 06:41:39 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 06:41:39 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 06:41:39 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG dbcommand => upgrade 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG dbhost => localhost 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG dbname => OMERO-server 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG dbpass => omero 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG dbuser => omero 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG rootpass => omero 06:41:40 2024-04-12 06:41:40,034 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 06:41:40 2024-04-12 06:41:40,034 [omego.extern] INFO Executing : omero version 06:41:41 OMERO.py version: 06:41:42 OMERO.server version: 06:41:42 5.6.3-452-73ca23df5e-ice36 06:41:42 5.19.2.dev0 06:41:42 2024-04-12 06:41:42,692 [omego.extern] INFO Completed [2.658 s] 06:41:42 2024-04-12 06:41:42,693 [omego.extern] DEBUG Using omero CLI from omero 06:41:42 2024-04-12 06:41:42,693 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 06:41:42 2024-04-12 06:41:42,693 [omego.extern] INFO Running [current environment]: omero config get --show-password 06:41:42 2024-04-12 06:41:42,693 [omego.extern] INFO Executing : omero config get --show-password 06:41:44 2024-04-12 06:41:44,318 [omego.extern] INFO Completed [1.625 s] 06:41:44 2024-04-12 06:41:44,318 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 06:41:44 2024-04-12 06:41:44,319 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 06:41:44 2024-04-12 06:41:44,637 [omego.extern] INFO Completed [0.319 s] 06:41:44 2024-04-12 06:41:44,638 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n' 06:41:44 2024-04-12 06:41:44,638 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2 06:41:44 06:41:44 2024-04-12 06:41:44,638 [omego.extern] INFO Running [current environment]: omero config get --show-password 06:41:44 2024-04-12 06:41:44,638 [omego.extern] INFO Executing : omero config get --show-password 06:41:46 2024-04-12 06:41:46,626 [omego.extern] INFO Completed [1.988 s] 06:41:46 2024-04-12 06:41:46,626 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 06:41:46 2024-04-12 06:41:46,627 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 06:41:46 2024-04-12 06:41:46,874 [omego.extern] INFO Completed [0.247 s] 06:41:46 2024-04-12 06:41:46,874 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 06:41:46 2024-04-12 06:41:46,874 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 06:41:46 2024-04-12 06:41:46,875 [omego.extern] INFO Running [current environment]: omero config get --show-password 06:41:46 2024-04-12 06:41:46,875 [omego.extern] INFO Executing : omero config get --show-password 06:41:48 2024-04-12 06:41:48,680 [omego.extern] INFO Completed [1.806 s] 06:41:48 2024-04-12 06:41:48,681 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 06:41:48 2024-04-12 06:41:48,681 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 06:41:49 2024-04-12 06:41:49,260 [omego.extern] INFO Completed [0.578 s] 06:41:49 2024-04-12 06:41:49,260 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 06:41:49 2024-04-12 06:41:49,260 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 06:41:49 2024-04-12 06:41:49,262 [ omego.db] INFO Database is already at OMERO5.4__0 06:41:49 + export LANG=en_US.UTF-8 06:41:49 + LANG=en_US.UTF-8 06:41:49 + export LANGUAGE=en_US:en 06:41:49 + LANGUAGE=en_US:en 06:41:49 + export LC_ALL=en_US.UTF-8 06:41:49 + LC_ALL=en_US.UTF-8 06:41:49 + BUILD_ID=DONT_KILL_ME 06:41:49 + omero admin start 06:42:07 WARNING: lock files in /home/omero/omero-server-data 06:42:07 ---------------------------------------- 06:42:07 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock 06:42:07 ---------------------------------------- 06:42:07 06:42:07 You may want to stop all server processes and remove 06:42:07 these files manually. Lock files can remain after an 06:42:07 abrupt server outage and are especially frequent on 06:42:07 remotely mounted filesystems like NFS. 06:42:07 06:42:07 No descriptor given. Using etc/grid/default.xml 06:42:32 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 06:42:32 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 06:42:32 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 06:42:32 Waiting on startup. Use CTRL-C to exit 06:42:33 + omero admin waitup 06:42:34 Waiting on startup. Use CTRL-C to exit 06:42:35 + omero admin diagnostics 06:42:36 06:42:36 ================================================================================ 06:42:36 OMERO Diagnostics (admin) 06:42:36 ================================================================================ 06:42:36 06:42:36 Commands: java -version 11.0.22 (/usr/bin/java) 06:42:36 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 06:42:36 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 06:42:36 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 06:42:36 Commands: psql --version 16.2 (/usr/bin/psql) 06:42:36 Commands: openssl version 3.0.71 (/usr/bin/openssl) 06:42:36 06:42:36 Component: OMERO.py 5.19.2.dev0 06:42:36 Component: OMERO.server 5.6.3-452-73ca23df5e-ice36 06:42:36 06:42:36 Server: icegridnode running 06:42:36 Server: Blitz-0 active (pid = 2329, enabled) 06:42:36 Server: DropBox active (pid = 2349, enabled) 06:42:36 Server: FileServer active (pid = 2363, enabled) 06:42:36 Server: Indexer-0 active (pid = 2359, enabled) 06:42:36 Server: MonitorServer active (pid = 2384, enabled) 06:42:36 Server: OMERO.Glacier2 active (pid = 2371, enabled) 06:42:36 Server: OMERO.IceStorm active (pid = 2409, enabled) 06:42:36 Server: PixelData-0 active (pid = 2385, enabled) 06:42:36 Server: Processor-0 activating (enabled) 06:42:36 Server: Tables-0 activating (enabled) 06:42:36 Server: TestDropBox inactive (enabled) 06:42:37 06:42:37 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 06:42:37 Log files: Blitz-0.log 25.3 KB errors=0 warnings=1 06:42:37 Log files: DropBox.log 1.2 KB 06:42:37 Log files: FileServer.log 114 B 06:42:37 Log files: Indexer-0.log 2.6 KB 06:42:37 Log files: MonitorServer.log 1.1 KB 06:42:37 Log files: PixelData-0.log 3.4 KB 06:42:37 Log files: Processor-0.log 592 B 06:42:37 Log files: Tables-0.log 841 B 06:42:37 Log files: TestDropBox.log n/a 06:42:37 Log files: master.err 2.1 KB 06:42:37 Log files: master.out 41.5 KB 06:42:37 Log files: Total size 0.08 MB 06:42:37 06:42:37 06:42:37 Environment:OMERO_HOME=(unset) 06:42:37 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 06:42:37 Environment:OMERO_NODE=(unset) 06:42:37 Environment:OMERO_MASTER=(unset) 06:42:37 Environment:OMERO_USERDIR=(unset) 06:42:37 Environment:OMERO_TMPDIR=(unset) 06:42:37 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:42:37 Environment:PYTHONPATH=(unset) 06:42:37 Environment:ICE_HOME=/opt/ice-3.6.5 06:42:37 Environment:LD_LIBRARY_PATH=(unset) 06:42:37 Environment:DYLD_LIBRARY_PATH=(unset) 06:42:37 06:42:37 OMERO SSL port:4064 06:42:37 OMERO TCP port:4063 06:42:37 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 06:42:37 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 06:42:37 06:42:37 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 06:42:37 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 06:42:37 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 06:42:37 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 06:42:37 06:42:37 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 12 April 2024 af4749d868bf3887e54bdc9dfa80bae7be0aaf34 06:42:37 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 12 April 2024 af4749d868bf3887e54bdc9dfa80bae7be0aaf34 06:42:37 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 12 April 2024 af4749d868bf3887e54bdc9dfa80bae7be0aaf34 06:42:37 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 12 April 2024 d25ebc34501b04bc0939410284fdfaa64957f273 06:42:37 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT 06:42:37 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT 06:42:37 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT 06:42:37 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT 06:42:37 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT 06:42:37 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT 06:42:37 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT 06:42:37 + deactivate 06:42:37 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 06:42:37 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:42:37 + export PATH 06:42:37 + unset _OLD_VIRTUAL_PATH 06:42:37 + '[' -n '' ']' 06:42:37 + '[' -n /bin/bash -o -n '' ']' 06:42:37 + hash -r 06:42:37 + '[' -n '' ']' 06:42:37 + unset VIRTUAL_ENV 06:42:37 + '[' '!' '' = nondestructive ']' 06:42:37 + unset -f deactivate 06:42:37 Finished: SUCCESS