00:52:06 Started by upstream project "Trigger" build number 410 00:52:06 originally caused by: 00:52:06 Started by timer 00:52:06 Running as SYSTEM 00:52:06 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:52:06 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17645531520052513189.sh 00:52:06 + source /home/settings.env 00:52:06 ++ OMERO_DB_HOST=pg 00:52:06 ++ OMERO_DB_USER=postgres 00:52:06 ++ OMERO_DB_PASS= 00:52:06 ++ OMERO_ROOT_PASS=omero 00:52:06 ++ OMERO_DATA_DIR=/OMERO 00:52:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:52:06 + OMERO_DB_NAME=OMERO-server 00:52:06 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:52:06 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:06 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:06 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:52:06 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:52:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:52:06 ++ deactivate nondestructive 00:52:06 ++ '[' -n '' ']' 00:52:06 ++ '[' -n '' ']' 00:52:06 ++ '[' -n /bin/bash -o -n '' ']' 00:52:06 ++ hash -r 00:52:06 ++ '[' -n '' ']' 00:52:06 ++ unset VIRTUAL_ENV 00:52:06 ++ '[' '!' nondestructive = nondestructive ']' 00:52:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:52:06 ++ export VIRTUAL_ENV 00:52:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:06 ++ export PATH 00:52:06 ++ '[' -n '' ']' 00:52:06 ++ '[' -z '' ']' 00:52:06 ++ _OLD_VIRTUAL_PS1= 00:52:06 ++ PS1='(.venv3) ' 00:52:06 ++ export PS1 00:52:06 ++ '[' -n /bin/bash -o -n '' ']' 00:52:06 ++ hash -r 00:52:06 + omero admin stop 00:52:08 Waiting on shutdown. Use CTRL-C to exit 00:52:08 .+ sleep 5 00:52:23 + deactivate 00:52:23 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:52:23 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:23 + export PATH 00:52:23 + unset _OLD_VIRTUAL_PATH 00:52:23 + '[' -n '' ']' 00:52:23 + '[' -n /bin/bash -o -n '' ']' 00:52:23 + hash -r 00:52:23 + '[' -n '' ']' 00:52:23 + unset VIRTUAL_ENV 00:52:23 + '[' '!' '' = nondestructive ']' 00:52:23 + unset -f deactivate 00:52:23 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:52:24 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 00:52:27 + '[' false = true ']' 00:52:27 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:52:27 Skipping PURGE_DATA:CleanDbAndRepo 00:52:27 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.2-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:52:29 Copied 1 artifact from "OMERO-build" build number 350 00:52:29 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 346 00:52:29 Copied 2 artifacts from "OMERO-build-build" build number 373 00:52:29 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11118445886958516760.sh 00:52:29 + source /home/settings.env 00:52:29 ++ OMERO_DB_HOST=pg 00:52:29 ++ OMERO_DB_USER=postgres 00:52:29 ++ OMERO_DB_PASS= 00:52:29 ++ OMERO_ROOT_PASS=omero 00:52:29 ++ OMERO_DATA_DIR=/OMERO 00:52:29 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:52:29 + OMERO_DB_NAME=OMERO-server 00:52:29 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:52:29 + mkdir -p /home/omero/omero-server-data 00:52:29 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:52:29 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:29 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:52:29 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:52:29 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:52:29 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:52:29 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:52:29 ++ ls OMERO.server-5.6.3-548-0710922a60-ice36.zip 00:52:29 + ZIP=OMERO.server-5.6.3-548-0710922a60-ice36.zip 00:52:29 + '[' '!' -z '' ']' 00:52:29 + DIST=OMERO.server-5.6.3-548-0710922a60-ice36 00:52:29 + unzip OMERO.server-5.6.3-548-0710922a60-ice36.zip 00:52:29 Archive: OMERO.server-5.6.3-548-0710922a60-ice36.zip 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/blitz/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/grid/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/profiles/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/error/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/grid/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/janelia/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/matplotlib/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/ncsa_paledit/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/seaborn/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/luts/wcif/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/analysis_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/annotation_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/export_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/figure_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/import_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/scripts/omero/util_scripts/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/server/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/share/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/share/licenses/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/misc/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__1/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__10/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__11/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__2/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__3/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__4/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__5/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__6/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__7/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__8/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3A__9/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3__4/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3__5/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3__6/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO3__7/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4.1__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4.2__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4.2__0/t/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4.3__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4.4__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO4__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.0__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.1__1/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.2__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.3__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4DEV__1/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4DEV__2/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4DEV__3/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/ 00:52:29 creating: OMERO.server-5.6.3-548-0710922a60-ice36/var/ 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/LICENSE.txt 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/backup.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/blitz/mail-senders.example 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/blitz/mail-server.example 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/build.properties 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/env.bat 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/env.sh 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/hibernate.properties 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/ice.config 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/logback-cli.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/logback-indexing-cli.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/logback-indexing.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/logback.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/mime.types 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/node1.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/node2.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/omero.properties 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/profiles/psql 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/rollover.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/Windows.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/error/maintainance.html 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/grid/README 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/grid/default.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/grid/templates.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/grid/windefault.xml 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/ice.config 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/internal.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/master.cfg 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/templates/robot.template 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/etc/testdropbox.config 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/history.rst 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/OMEZarrReader.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/activation.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aggdesigner-algorithm.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aircompressor.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/annotations.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/antlr.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aopalliance.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/avatica-core.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/avatica-metrics.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aws-java-sdk-core.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aws-java-sdk-kms.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/aws-java-sdk-s3.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/base.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-all.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-anim.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-awt-util.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-bridge.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-codec.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-constants.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-css.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-dom.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-ext.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-extension.jar 00:52:29 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-gui-util.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-gvt.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-i18n.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-parser.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-rasterizer-ext.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-rasterizer.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-script.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-slideshow.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-squiggle-ext.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-squiggle.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-svg-dom.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-svgbrowser.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-svggen.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-svgpp.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-svgrasterizer.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-swing.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-transcoder.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-ttf2svg.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-util.jar 00:52:30 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/lib/client/batik-xml.jar 00:52:30 inflating: 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OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/psql-header.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/schema.sql 00:52:32 inflating: OMERO.server-5.6.3-548-0710922a60-ice36/sql/psql/OMERO5.4__0/views.sql 00:52:32 + rm -f OMERO.server-5.6.3-548-0710922a60-ice36.zip 00:52:32 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-548-0710922a60-ice36 /home/omero/workspace/OMERO-server/OMERO.server 00:52:32 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:52:32 ++ deactivate nondestructive 00:52:32 ++ '[' -n '' ']' 00:52:32 ++ '[' -n '' ']' 00:52:32 ++ '[' -n /bin/bash -o -n '' ']' 00:52:32 ++ hash -r 00:52:32 ++ '[' -n '' ']' 00:52:32 ++ unset VIRTUAL_ENV 00:52:32 ++ '[' '!' nondestructive = nondestructive ']' 00:52:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:52:32 ++ export VIRTUAL_ENV 00:52:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:32 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:52:32 ++ export PATH 00:52:32 ++ '[' -n '' ']' 00:52:32 ++ '[' -z '' ']' 00:52:32 ++ _OLD_VIRTUAL_PS1= 00:52:32 ++ PS1='(.venv3) ' 00:52:32 ++ export PS1 00:52:32 ++ '[' -n /bin/bash -o -n '' ']' 00:52:32 ++ hash -r 00:52:32 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 00:52:33 Collecting zeroc-ice==3.6.5 00:52:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 00:52:36 Installing collected packages: zeroc-ice 00:52:37 Successfully installed zeroc-ice-3.6.5 00:52:37 + pip install -U pip future 00:52:37 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 00:52:37 Collecting pip 00:52:37 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) 00:52:37 Collecting future 00:52:37 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:52:37 Installing collected packages: pip, future 00:52:37 Attempting uninstall: pip 00:52:37 Found existing installation: pip 21.2.3 00:52:38 Uninstalling pip-21.2.3: 00:52:38 Successfully uninstalled pip-21.2.3 00:52:39 Successfully installed future-1.0.0 pip-25.0.1 00:52:39 + pip install markdown 00:52:40 Collecting markdown 00:52:40 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 00:52:40 Collecting importlib-metadata>=4.4 (from markdown) 00:52:40 Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB) 00:52:40 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 00:52:40 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB) 00:52:40 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 00:52:40 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB) 00:52:40 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB) 00:52:40 Installing collected packages: zipp, importlib-metadata, markdown 00:52:40 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0 00:52:40 + pip install reportlab 00:52:40 Collecting reportlab 00:52:40 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB) 00:52:41 Collecting pillow>=9.0.0 (from reportlab) 00:52:41 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB) 00:52:41 Collecting chardet (from reportlab) 00:52:41 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 00:52:41 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB) 00:52:41 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 00:52:41 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 00:52:41 Installing collected packages: pillow, chardet, reportlab 00:52:42 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1 00:52:42 + pip install omego 00:52:43 Collecting omego 00:52:43 Using cached omego-0.7.0-py3-none-any.whl 00:52:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 00:52:43 Collecting yaclifw>=0.1.1 (from omego) 00:52:43 Using cached yaclifw-0.2.0-py3-none-any.whl 00:52:43 Collecting six (from yaclifw>=0.1.1->omego) 00:52:43 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:52:43 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:52:43 Installing collected packages: six, yaclifw, omego 00:52:43 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:52:43 + pip install tables 00:52:43 Collecting tables 00:52:43 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 00:52:44 Collecting numpy>=1.19.0 (from tables) 00:52:44 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 00:52:44 Collecting numexpr>=2.6.2 (from tables) 00:52:44 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:52:44 Collecting packaging (from tables) 00:52:44 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB) 00:52:44 Collecting py-cpuinfo (from tables) 00:52:44 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:52:44 Collecting blosc2>=2.3.0 (from tables) 00:52:44 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 00:52:44 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 00:52:44 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 00:52:44 Collecting msgpack (from blosc2>=2.3.0->tables) 00:52:44 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 00:52:44 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:52:44 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 00:52:44 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB) 00:52:44 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 00:52:44 Using cached packaging-24.2-py3-none-any.whl (65 kB) 00:52:44 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:52:44 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB) 00:52:44 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 00:52:44 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 00:52:48 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2 00:52:48 + pip install jinja2 00:52:48 Collecting jinja2 00:52:48 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:52:48 Collecting MarkupSafe>=2.0 (from jinja2) 00:52:48 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) 00:52:48 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:52:48 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB) 00:52:48 Installing collected packages: MarkupSafe, jinja2 00:52:48 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 00:52:48 + pip install omero-py 00:52:49 Collecting omero-py 00:52:49 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB) 00:52:49 Collecting urllib3<2 (from omero-py) 00:52:49 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 00:52:49 Collecting appdirs (from omero-py) 00:52:49 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:52:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 00:52:49 Collecting numpy<2 (from omero-py) 00:52:49 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 00:52:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0) 00:52:49 Collecting PyYAML (from omero-py) 00:52:49 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:52:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 00:52:50 Collecting requests (from omero-py) 00:52:50 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:52:50 Collecting portalocker (from omero-py) 00:52:50 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB) 00:52:50 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 00:52:50 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) 00:52:50 Collecting idna<4,>=2.5 (from requests->omero-py) 00:52:50 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 00:52:50 Collecting certifi>=2017.4.17 (from requests->omero-py) 00:52:50 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) 00:52:50 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB) 00:52:50 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 00:52:50 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:52:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:52:50 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:52:50 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 00:52:50 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:52:50 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) 00:52:50 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB) 00:52:50 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:52:50 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 00:52:50 Attempting uninstall: numpy 00:52:50 Found existing installation: numpy 2.0.2 00:52:50 Uninstalling numpy-2.0.2: 00:52:50 Successfully uninstalled numpy-2.0.2 00:52:55 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20 00:52:55 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:52:55 Collecting omero-metadata 00:52:55 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-yjm18zcm/omero-metadata_4d607606c9a948f78b151d4d3a130cee 00:52:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-yjm18zcm/omero-metadata_4d607606c9a948f78b151d4d3a130cee 00:52:56 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 893f6e9d4e02b3857c1bcda378628e35ea9fe3c5 00:52:56 Installing build dependencies: started 00:52:58 Installing build dependencies: finished with status 'done' 00:52:58 Getting requirements to build wheel: started 00:52:58 Getting requirements to build wheel: finished with status 'done' 00:52:58 Preparing metadata (pyproject.toml): started 00:52:58 Preparing metadata (pyproject.toml): finished with status 'done' 00:52:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6) 00:52:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 00:52:58 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.6) 00:52:59 Collecting pandas (from omero-metadata) 00:52:59 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 00:52:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 00:52:59 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:52:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:52:59 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 00:52:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0) 00:52:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:52:59 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 00:52:59 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1) 00:52:59 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2) 00:52:59 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:52:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:52:59 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:52:59 Using cached pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB) 00:52:59 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:52:59 Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:52:59 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:52:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1) 00:52:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 00:52:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31) 00:52:59 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 00:52:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:52:59 Using cached pytz-2025.1-py2.py3-none-any.whl (507 kB) 00:52:59 Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB) 00:52:59 Building wheels for collected packages: omero-metadata 00:52:59 Building wheel for omero-metadata (pyproject.toml): started 00:52:59 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:52:59 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=f335af5569b5ad41f2663e084f5b624ce068b3cb274b414655c795fb1ad5fd7c 00:52:59 Stored in directory: /tmp/pip-ephem-wheel-cache-ztfkgmmy/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 00:52:59 Successfully built omero-metadata 00:52:59 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 00:53:05 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.1 tzdata-2025.1 00:53:05 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:53:05 Collecting omero-cli-render 00:53:05 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-93id5h7y/omero-cli-render_ad643b4100eb4360a15de4d04d11c709 00:53:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-93id5h7y/omero-cli-render_ad643b4100eb4360a15de4d04d11c709 00:53:06 Running command git checkout -b merge_ci --track origin/merge_ci 00:53:06 Switched to a new branch 'merge_ci' 00:53:06 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:53:06 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a60daf48b71138f7d90694105a407f6c8caf03cf 00:53:06 Installing build dependencies: started 00:53:08 Installing build dependencies: finished with status 'done' 00:53:08 Getting requirements to build wheel: started 00:53:08 Getting requirements to build wheel: finished with status 'done' 00:53:08 Preparing metadata (pyproject.toml): started 00:53:09 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 00:53:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6) 00:53:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 00:53:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:53:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:53:09 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 00:53:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0) 00:53:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:53:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 00:53:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1) 00:53:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1) 00:53:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 00:53:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31) 00:53:09 Building wheels for collected packages: omero-cli-render 00:53:09 Building wheel for omero-cli-render (pyproject.toml): started 00:53:09 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:53:09 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19594 sha256=63a5a3ba9a90cd7607ed5344ed9be29e3a8ca42104be3e26b8b934fed01871f9 00:53:09 Stored in directory: /tmp/pip-ephem-wheel-cache-xfp348yf/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 00:53:09 Successfully built omero-cli-render 00:53:09 Installing collected packages: omero-cli-render 00:53:09 Successfully installed omero-cli-render-0.8.2.dev0 00:53:09 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:53:10 Collecting omero-cli-duplicate 00:53:10 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-65k25mmb/omero-cli-duplicate_2a77d17ddb304ce09839edf333783deb 00:53:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-65k25mmb/omero-cli-duplicate_2a77d17ddb304ce09839edf333783deb 00:53:10 Running command git checkout -b merge_ci --track origin/merge_ci 00:53:11 Switched to a new branch 'merge_ci' 00:53:11 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:53:11 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit a31fb05e70cb540b5beacc447a745abd89a55ebd 00:53:11 Installing build dependencies: started 00:53:12 Installing build dependencies: finished with status 'done' 00:53:12 Getting requirements to build wheel: started 00:53:13 Getting requirements to build wheel: finished with status 'done' 00:53:13 Preparing metadata (pyproject.toml): started 00:53:13 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:13 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6) 00:53:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 00:53:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:53:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:53:13 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 00:53:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0) 00:53:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 00:53:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:53:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 00:53:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1) 00:53:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1) 00:53:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 00:53:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31) 00:53:13 Building wheels for collected packages: omero-cli-duplicate 00:53:13 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:53:13 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:53:13 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=58190f301c4cfbd0c8c0ba3ddb1edd7c1c5b031c31e78475203972c6944f7b52 00:53:13 Stored in directory: /tmp/pip-ephem-wheel-cache-56r8qly6/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 00:53:13 Successfully built omero-cli-duplicate 00:53:13 Installing collected packages: omero-cli-duplicate 00:53:13 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:53:13 + pip install omero-certificates 00:53:14 Collecting omero-certificates 00:53:14 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:53:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6) 00:53:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 00:53:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:53:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:53:14 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 00:53:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0) 00:53:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 00:53:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:53:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 00:53:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1) 00:53:14 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1) 00:53:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 00:53:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31) 00:53:14 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:53:14 Installing collected packages: omero-certificates 00:53:14 Successfully installed omero-certificates-0.4.0 00:53:14 + for x in *.tar.gz 00:53:14 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:53:15 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:53:15 Installing build dependencies: started 00:53:17 Installing build dependencies: finished with status 'done' 00:53:17 Getting requirements to build wheel: started 00:53:17 Getting requirements to build wheel: finished with status 'done' 00:53:17 Preparing metadata (pyproject.toml): started 00:53:17 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:17 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6) 00:53:17 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 00:53:17 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:53:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:53:17 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 00:53:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0) 00:53:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 00:53:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:53:17 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 00:53:17 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1) 00:53:17 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1) 00:53:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 00:53:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31) 00:53:17 Building wheels for collected packages: omero-dropbox 00:53:17 Building wheel for omero-dropbox (pyproject.toml): started 00:53:17 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:53:17 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=d9ac298c4ab6ee900e999bf6fa7422e8f0c8e42aa6512305ecd389dd9720b586 00:53:17 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 00:53:17 Successfully built omero-dropbox 00:53:17 Installing collected packages: omero-dropbox 00:53:17 Successfully installed omero-dropbox-5.7.1.dev0 00:53:18 + for x in *.tar.gz 00:53:18 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:53:18 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:53:18 Installing build dependencies: started 00:53:20 Installing build dependencies: finished with status 'done' 00:53:20 Getting requirements to build wheel: started 00:53:20 Getting requirements to build wheel: finished with status 'done' 00:53:20 Preparing metadata (pyproject.toml): started 00:53:20 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:20 Building wheels for collected packages: omero_marshal 00:53:20 Building wheel for omero_marshal (pyproject.toml): started 00:53:21 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:53:21 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=294fd16aa985407a3795819e006743ee55f3c7cf45b379e88652ce2791d6281b 00:53:21 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 00:53:21 Successfully built omero_marshal 00:53:21 Installing collected packages: omero_marshal 00:53:21 Successfully installed omero_marshal-0.9.1.dev0 00:53:21 + for x in *.tar.gz 00:53:21 + pip install -U omero_py-5.19.7.dev0.tar.gz 00:53:21 Processing ./omero_py-5.19.7.dev0.tar.gz 00:53:22 Installing build dependencies: started 00:53:24 Installing build dependencies: finished with status 'done' 00:53:24 Getting requirements to build wheel: started 00:53:24 Getting requirements to build wheel: finished with status 'done' 00:53:24 Preparing metadata (pyproject.toml): started 00:53:24 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20) 00:53:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4) 00:53:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0) 00:53:24 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4) 00:53:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0) 00:53:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2) 00:53:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5) 00:53:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3) 00:53:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1) 00:53:24 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1) 00:53:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10) 00:53:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2025.1.31) 00:53:24 Building wheels for collected packages: omero-py 00:53:24 Building wheel for omero-py (pyproject.toml): started 00:53:25 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:53:26 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783224 sha256=75cea754fa07146446bcb9bc87764891ce243293df28075c1c84aeb3fb1b720f 00:53:26 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b 00:53:26 Successfully built omero-py 00:53:26 Installing collected packages: omero-py 00:53:26 Attempting uninstall: omero-py 00:53:26 Found existing installation: omero-py 5.19.6 00:53:26 Uninstalling omero-py-5.19.6: 00:53:26 Successfully uninstalled omero-py-5.19.6 00:53:28 Successfully installed omero-py-5.19.7.dev0 00:53:29 + for x in *.tar.gz 00:53:29 + pip install -U omero_scripts-5.9.1.dev0.tar.gz 00:53:29 Processing ./omero_scripts-5.9.1.dev0.tar.gz 00:53:29 Installing build dependencies: started 00:53:31 Installing build dependencies: finished with status 'done' 00:53:31 Getting requirements to build wheel: started 00:53:31 Getting requirements to build wheel: finished with status 'done' 00:53:31 Preparing metadata (pyproject.toml): started 00:53:31 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:31 Building wheels for collected packages: omero-scripts 00:53:31 Building wheel for omero-scripts (pyproject.toml): started 00:53:32 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:53:32 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136849 sha256=a755403ba64faf81dc46a85992fea1860831c7bacebef4b784449946e8d85121 00:53:32 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c 00:53:32 Successfully built omero-scripts 00:53:32 Installing collected packages: omero-scripts 00:53:32 Successfully installed omero-scripts-5.9.1.dev0 00:53:32 + for x in *.tar.gz 00:53:32 + pip install -U omero_web-5.29.1.dev0.tar.gz 00:53:32 Processing ./omero_web-5.29.1.dev0.tar.gz 00:53:33 Installing build dependencies: started 00:53:35 Installing build dependencies: finished with status 'done' 00:53:35 Getting requirements to build wheel: started 00:53:36 Getting requirements to build wheel: finished with status 'done' 00:53:36 Preparing metadata (pyproject.toml): started 00:53:36 Preparing metadata (pyproject.toml): finished with status 'done' 00:53:36 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (5.19.7.dev0) 00:53:36 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0) 00:53:36 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 00:53:36 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0) 00:53:36 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB) 00:53:37 Collecting django-pipeline (from omero-web==5.29.1.dev0) 00:53:37 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) 00:53:37 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0) 00:53:37 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:53:37 Collecting django-csp (from omero-web==5.29.1.dev0) 00:53:37 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 00:53:37 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0) 00:53:37 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) 00:53:37 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0) 00:53:37 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 00:53:37 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0) 00:53:37 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (11.1.0) 00:53:37 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (2025.1) 00:53:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (3.1.1) 00:53:37 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (24.2) 00:53:37 Collecting importlib-resources (from omero-web==5.29.1.dev0) 00:53:37 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 00:53:37 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 00:53:37 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 00:53:37 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 00:53:37 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 00:53:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20) 00:53:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4) 00:53:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0) 00:53:37 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4) 00:53:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2) 00:53:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5) 00:53:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3) 00:53:37 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (53.0.0) 00:53:37 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0) 00:53:37 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 00:53:37 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.29.1.dev0) (3.21.0) 00:53:37 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) 00:53:37 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:53:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1) 00:53:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10) 00:53:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31) 00:53:37 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:53:37 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 00:53:37 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB) 00:53:37 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 00:53:37 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) 00:53:37 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 00:53:37 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) 00:53:37 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 00:53:37 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 00:53:37 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 00:53:37 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 00:53:37 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:53:37 Building wheels for collected packages: omero-web 00:53:37 Building wheel for omero-web (pyproject.toml): started 00:53:39 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:53:39 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=056b6726a16cf6943e266f27b3cc6aacc5d1e177914cbe90642e686dfde3a186 00:53:39 Stored in directory: /home/omero/.cache/pip/wheels/20/6a/be/a0eb92c362960a201e1b2f293382a92507134b48bed64ccadd 00:53:39 Successfully built omero-web 00:53:39 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web 00:53:42 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.9.0 00:53:42 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:53:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:53:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:53:42 --2025-03-22 00:53:42-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:53:43 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ... 00:53:43 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. 00:53:43 HTTP request sent, awaiting response... 200 OK 00:53:43 Length: 115659 (113K) [text/plain] 00:53:43 Saving to: ‘Figure_To_Pdf.py’ 00:53:43 00:53:43 0K .......... .......... .......... .......... .......... 44% 3.30M 0s 00:53:43 50K .......... .......... .......... .......... .......... 88% 3.95M 0s 00:53:43 100K .......... .. 100% 163M=0.03s 00:53:43 00:53:43 2025-03-22 00:53:43 (4.05 MB/s) - ‘Figure_To_Pdf.py’ saved [115659/115659] 00:53:43 00:53:43 + chmod 755 Figure_To_Pdf.py 00:53:43 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:53:43 + omero config set omero.db.name OMERO-server 00:53:44 + omero config set omero.db.host pg 00:53:45 + omero config set omero.db.user postgres 00:53:47 + omero config set omero.data.dir /home/omero/omero-server-data 00:53:48 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:53:50 + omero config set omero.db.poolsize 25 00:53:51 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:53:53 + omero config set omero.security.trustStorePassword changeit 00:53:54 + omero config set omero.mail.config true 00:53:56 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:53:57 + omero config set omero.mail.host smtp.dundee.ac.uk 00:53:59 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:54:00 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:54:02 + omero certificates 00:54:03 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 00:54:03 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:54:03 + '[' false = true ']' 00:54:03 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:54:03 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:54:03 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:54:04 2025-03-22 00:54:04,063 [ omego.db] DEBUG dbcommand => upgrade 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG dbhost => localhost 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG dbname => OMERO-server 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG dbpass => omero 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG dbuser => omero 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG rootpass => omero 00:54:04 2025-03-22 00:54:04,064 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:54:04 2025-03-22 00:54:04,064 [omego.extern] INFO Executing : omero version 00:54:05 OMERO.py version: 00:54:05 OMERO.server version: 00:54:05 5.6.3-548-0710922a60-ice36 00:54:05 5.19.7.dev0 00:54:05 2025-03-22 00:54:05,624 [omego.extern] INFO Completed [1.560 s] 00:54:05 2025-03-22 00:54:05,625 [omego.extern] DEBUG Using omero CLI from omero 00:54:05 2025-03-22 00:54:05,625 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:54:05 2025-03-22 00:54:05,625 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:54:05 2025-03-22 00:54:05,625 [omego.extern] INFO Executing : omero config get --show-password 00:54:07 2025-03-22 00:54:07,005 [omego.extern] INFO Completed [1.380 s] 00:54:07 2025-03-22 00:54:07,005 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:54:07 2025-03-22 00:54:07,006 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:54:07 2025-03-22 00:54:07,013 [omego.extern] INFO Completed [0.007 s] 00:54:07 2025-03-22 00:54:07,013 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 00:54:07 2025-03-22 00:54:07,013 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 00:54:07 00:54:07 2025-03-22 00:54:07,013 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:54:07 2025-03-22 00:54:07,013 [omego.extern] INFO Executing : omero config get --show-password 00:54:08 2025-03-22 00:54:08,374 [omego.extern] INFO Completed [1.360 s] 00:54:08 2025-03-22 00:54:08,374 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:54:08 2025-03-22 00:54:08,374 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:54:08 2025-03-22 00:54:08,386 [omego.extern] INFO Completed [0.011 s] 00:54:08 2025-03-22 00:54:08,386 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 00:54:08 2025-03-22 00:54:08,386 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:54:08 2025-03-22 00:54:08,386 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:54:08 2025-03-22 00:54:08,386 [omego.extern] INFO Executing : omero config get --show-password 00:54:09 2025-03-22 00:54:09,888 [omego.extern] INFO Completed [1.502 s] 00:54:09 2025-03-22 00:54:09,888 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:54:09 2025-03-22 00:54:09,889 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:54:09 2025-03-22 00:54:09,902 [omego.extern] INFO Completed [0.013 s] 00:54:09 2025-03-22 00:54:09,902 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:54:09 2025-03-22 00:54:09,902 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:54:09 2025-03-22 00:54:09,904 [ omego.db] INFO Database is already at OMERO5.4__0 00:54:09 + export LANG=en_US.UTF-8 00:54:09 + LANG=en_US.UTF-8 00:54:09 + export LANGUAGE=en_US:en 00:54:09 + LANGUAGE=en_US:en 00:54:09 + export LC_ALL=en_US.UTF-8 00:54:09 + LC_ALL=en_US.UTF-8 00:54:09 + BUILD_ID=DONT_KILL_ME 00:54:09 + omero admin start 00:54:20 No descriptor given. Using etc/grid/default.xml 00:54:28 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:54:28 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:54:28 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:54:28 Waiting on startup. Use CTRL-C to exit 00:54:29 + omero admin waitup 00:54:31 Waiting on startup. Use CTRL-C to exit 00:54:31 + omero admin diagnostics 00:54:32 00:54:32 ================================================================================ 00:54:32 OMERO Diagnostics (admin) 00:54:32 ================================================================================ 00:54:32 00:54:32 Commands: java -version 11.0.24 (/usr/bin/java) 00:54:32 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:54:32 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:54:32 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:54:32 Commands: psql --version 16.4 (/usr/bin/psql) 00:54:32 Commands: openssl version 3.0.71 (/usr/bin/openssl) 00:54:32 00:54:32 Component: OMERO.py 5.19.7.dev0 00:54:32 Component: OMERO.server 5.6.3-548-0710922a60-ice36 00:54:32 00:54:32 Server: icegridnode running 00:54:32 Server: Blitz-0 active (pid = 15798, enabled) 00:54:32 Server: Indexer-0 activating (enabled) 00:54:32 Server: OMERO.Glacier2 active (pid = 15821, enabled) 00:54:32 Server: OMERO.IceStorm active (pid = 15837, enabled) 00:54:32 Server: Processor-0 active (pid = 15866, enabled) 00:54:32 Server: Tables-0 active (pid = 15842, enabled) 00:54:32 00:54:32 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:54:32 Log files: Blitz-0.log 32.9 KB errors=0 warnings=1 00:54:32 Log files: DropBox.log n/a 00:54:32 Log files: FileServer.log n/a 00:54:32 Log files: Indexer-0.log 238 B 00:54:32 Log files: MonitorServer.log n/a 00:54:32 Log files: Processor-0.log 735 B 00:54:32 Log files: Tables-0.log 961 B 00:54:32 Log files: TestDropBox.log n/a 00:54:32 Log files: master.err 23.9 KB 00:54:32 Log files: master.out 30.5 KB 00:54:32 Log files: Total size 0.09 MB 00:54:32 00:54:32 00:54:32 Environment:OMERO_HOME=(unset) 00:54:32 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:54:32 Environment:OMERO_NODE=(unset) 00:54:32 Environment:OMERO_MASTER=(unset) 00:54:32 Environment:OMERO_USERDIR=(unset) 00:54:32 Environment:OMERO_TMPDIR=(unset) 00:54:32 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:54:32 Environment:PYTHONPATH=(unset) 00:54:32 Environment:ICE_HOME=/opt/ice-3.6.5 00:54:32 Environment:LD_LIBRARY_PATH=(unset) 00:54:32 Environment:DYLD_LIBRARY_PATH=(unset) 00:54:32 00:54:32 OMERO SSL port:4064 00:54:32 OMERO TCP port:4063 00:54:32 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:54:32 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:54:32 00:54:32 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:54:32 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:54:32 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:54:32 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 00:54:33 00:54:33 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 22 March 2025 cef46bff891674a120fde86820e308d486e81ec8 00:54:33 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 22 March 2025 cef46bff891674a120fde86820e308d486e81ec8 00:54:33 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 22 March 2025 cef46bff891674a120fde86820e308d486e81ec8 00:54:33 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 22 March 2025 cad62125f57a0244c7a0b4bbc982061197de2ddb 00:54:33 Jar: lib/server/omero-blitz.jar jar 5.8.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-common.jar jar 5.7.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-gateway.jar jar 5.10.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-model.jar jar 5.7.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-renderer.jar jar 5.6.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-romio.jar jar 5.8.2-SNAPSHOT 00:54:33 Jar: lib/server/omero-server.jar jar 5.7.2-SNAPSHOT 00:54:33 + deactivate 00:54:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:54:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:54:33 + export PATH 00:54:33 + unset _OLD_VIRTUAL_PATH 00:54:33 + '[' -n '' ']' 00:54:33 + '[' -n /bin/bash -o -n '' ']' 00:54:33 + hash -r 00:54:33 + '[' -n '' ']' 00:54:33 + unset VIRTUAL_ENV 00:54:33 + '[' '!' '' = nondestructive ']' 00:54:33 + unset -f deactivate 00:54:33 Finished: SUCCESS